Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m33/peak-motifs_oligos_7nt_mkv4_m33_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m33/peak-motifs_oligos_7nt_mkv4_m33.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m33/peak-motifs_oligos_7nt_mkv4_m33_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m33/peak-motifs_oligos_7nt_mkv4_m33.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m33/peak-motifs_oligos_7nt_mkv4_m33_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m33/peak-motifs_oligos_7nt_mkv4_m33_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m33/peak-motifs_oligos_7nt_mkv4_m33_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m33/peak-motifs_oligos_7nt_mkv4_m33_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m33/peak-motifs_oligos_7nt_mkv4_m33_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m33/peak-motifs_oligos_7nt_mkv4_m33_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m33/peak-motifs_oligos_7nt_mkv4_m33.tf
		file1	1	13	540
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv4_m33 MA0499.2 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 MYOD1 0.889 0.889 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m33 MA0745.2 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 SNAI2 0.884 0.884 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m33 MA1620.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 Ptf1a(var.3) 0.944 0.871 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_7nt_mkv4_m33 MA1621.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 Rbpjl 0.929 0.863 13 14 13 14 0.9286 1.0000 0.9286 D -1
oligos_7nt_mkv4_m33 MA0832.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 Tcf21 0.851 0.790 13 14 13 14 0.9286 1.0000 0.9286 R -1
oligos_7nt_mkv4_m33 MA1641.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 MYF5 0.851 0.786 13 12 12 13 0.9231 0.9231 1.0000 R 0
oligos_7nt_mkv4_m33 MA1619.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 Ptf1a(var.2) 0.841 0.777 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_7nt_mkv4_m33 MA0830.2 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 TCF4 0.774 0.774 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m33 MA1631.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 ASCL1(var.2) 0.763 0.763 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m33 MA1105.2 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 GRHL2 0.788 0.727 13 12 12 13 0.9231 0.9231 1.0000 R 1
oligos_7nt_mkv4_m33 MA1642.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 NEUROG2(var.2) 0.726 0.726 13 13 13 13 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv4_m33 MA1618.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 Ptf1a 0.722 0.722 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m33 MA1485.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 FERD3L 0.777 0.721 13 14 13 14 0.9286 1.0000 0.9286 D -1
oligos_7nt_mkv4_m33 MA0521.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 Tcf12 0.846 0.716 13 11 11 13 0.8462 0.8462 1.0000 R 0
oligos_7nt_mkv4_m33 MA0500.2 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 MYOG 0.771 0.712 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_7nt_mkv4_m33 MA0744.2 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 SCRT2 0.872 0.708 13 16 13 16 0.8125 1.0000 0.8125 R 0
oligos_7nt_mkv4_m33 MA0820.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 FIGLA 0.913 0.703 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_7nt_mkv4_m33 MA0743.2 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 SCRT1 0.864 0.702 13 16 13 16 0.8125 1.0000 0.8125 R 0
oligos_7nt_mkv4_m33 MA0665.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 MSC 0.896 0.689 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_7nt_mkv4_m33 MA0103.3 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 ZEB1 0.813 0.688 13 11 11 13 0.8462 0.8462 1.0000 D 1
oligos_7nt_mkv4_m33 MA1559.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 SNAI3 0.890 0.685 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_7nt_mkv4_m33 MA0783.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 PKNOX2 0.739 0.682 13 12 12 13 0.9231 0.9231 1.0000 R 0
oligos_7nt_mkv4_m33 MA0667.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 MYF6 0.885 0.680 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_7nt_mkv4_m33 MA1467.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 ATOH1(var.2) 0.869 0.669 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_7nt_mkv4_m33 MA1558.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 SNAI1 0.850 0.653 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_7nt_mkv4_m33 MA0091.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 TAL1::TCF3 0.707 0.653 13 12 12 13 0.9231 0.9231 1.0000 R 1
oligos_7nt_mkv4_m33 MA0797.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 TGIF2 0.706 0.652 13 12 12 13 0.9231 0.9231 1.0000 R 0
oligos_7nt_mkv4_m33 MA1472.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 BHLHA15(var.2) 0.837 0.644 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_7nt_mkv4_m33 MA1648.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 TCF12(var.2) 0.758 0.642 13 11 11 13 0.8462 0.8462 1.0000 D 1
oligos_7nt_mkv4_m33 MA0522.3 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 TCF3 0.751 0.636 13 11 11 13 0.8462 0.8462 1.0000 D 1
oligos_7nt_mkv4_m33 MA0691.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 TFAP4 0.819 0.630 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_7nt_mkv4_m33 MA1109.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 NEUROD1 0.727 0.624 13 13 12 14 0.8571 0.9231 0.9231 R -1
oligos_7nt_mkv4_m33 MA0819.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 CLOCK 0.787 0.605 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_7nt_mkv4_m33 MA0816.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 Ascl2 0.784 0.603 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_7nt_mkv4_m33 MA1570.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 TFAP4(var.2) 0.775 0.596 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_7nt_mkv4_m33 MA1100.2 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 ASCL1 0.770 0.593 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_7nt_mkv4_m33 MA1635.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 BHLHE22(var.2) 0.736 0.566 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_7nt_mkv4_m33 MA1638.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 HAND2 0.725 0.558 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_7nt_mkv4_m33 MA0807.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 TBX5 0.892 0.549 13 8 8 13 0.6154 0.6154 1.0000 R 0
oligos_7nt_mkv4_m33 MA0100.3 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 MYB 0.708 0.544 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_7nt_mkv4_m33 MA0806.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 TBX4 0.881 0.542 13 8 8 13 0.6154 0.6154 1.0000 R 0
oligos_7nt_mkv4_m33 MA0803.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 TBX15 0.858 0.528 13 8 8 13 0.6154 0.6154 1.0000 R 0
oligos_7nt_mkv4_m33 MA0805.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 TBX1 0.838 0.516 13 8 8 13 0.6154 0.6154 1.0000 R 0
oligos_7nt_mkv4_m33 MA0801.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 MGA 0.819 0.504 13 8 8 13 0.6154 0.6154 1.0000 R 0
oligos_7nt_mkv4_m33 MA1567.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 TBX6 0.758 0.487 13 10 9 14 0.6429 0.6923 0.9000 R -1
oligos_7nt_mkv4_m33 MA1566.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 TBX3 0.744 0.478 13 10 9 14 0.6429 0.6923 0.9000 R -1
oligos_7nt_mkv4_m33 MA0690.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 TBX21 0.707 0.455 13 10 9 14 0.6429 0.6923 0.9000 R -1
oligos_7nt_mkv4_m33 MA0802.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 TBR1 0.840 0.448 13 10 8 15 0.5333 0.6154 0.8000 R -2
oligos_7nt_mkv4_m33 MA0688.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 TBX2 0.738 0.443 13 11 9 15 0.6000 0.6923 0.8182 R -2
oligos_7nt_mkv4_m33 MA1647.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 PRDM4 0.713 0.428 13 11 9 15 0.6000 0.6923 0.8182 D 4
oligos_7nt_mkv4_m33 MA0689.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 TBX20 0.709 0.425 13 11 9 15 0.6000 0.6923 0.8182 R -2
oligos_7nt_mkv4_m33 MA0480.1 oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33 Foxo1 0.703 0.422 13 11 9 15 0.6000 0.6923 0.8182 D 4 
 Host name	pedagogix
 Job started	2020-04-13.231020
 Job done	2020-04-13.231117
 Seconds	7.74
	user	7.74
	system	0.93
	cuser	44.44
;	csystem	2.77