Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m34/peak-motifs_oligos_7nt_mkv4_m34_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m34/peak-motifs_oligos_7nt_mkv4_m34.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m34/peak-motifs_oligos_7nt_mkv4_m34_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m34/peak-motifs_oligos_7nt_mkv4_m34.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m34/peak-motifs_oligos_7nt_mkv4_m34_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m34/peak-motifs_oligos_7nt_mkv4_m34_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m34/peak-motifs_oligos_7nt_mkv4_m34_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m34/peak-motifs_oligos_7nt_mkv4_m34_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m34/peak-motifs_oligos_7nt_mkv4_m34_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m34/peak-motifs_oligos_7nt_mkv4_m34_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m34/peak-motifs_oligos_7nt_mkv4_m34.tf
		file1	1	11	111
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv4_m34 MA1111.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 NR2F2 0.965 0.965 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m34 MA0141.3 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 ESRRB 0.888 0.888 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m34 MA0643.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 Esrrg 0.946 0.860 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_7nt_mkv4_m34 MA1112.2 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 NR4A1 0.907 0.832 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_7nt_mkv4_m34 MA0592.3 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 ESRRA 0.931 0.787 11 13 11 13 0.8462 1.0000 0.8462 D -2
oligos_7nt_mkv4_m34 MA0017.2 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 NR2F1 0.888 0.752 11 13 11 13 0.8462 1.0000 0.8462 D 0
oligos_7nt_mkv4_m34 MA1540.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 NR5A1 0.896 0.747 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_7nt_mkv4_m34 MA1535.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 NR2C1 0.862 0.706 11 9 9 11 0.8182 0.8182 1.0000 D 1
oligos_7nt_mkv4_m34 MA0071.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 RORA 0.910 0.683 11 10 9 12 0.7500 0.8182 0.9000 D -1
oligos_7nt_mkv4_m34 MA0160.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 NR4A2 0.939 0.683 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv4_m34 MA0505.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 Nr5a2 0.864 0.633 11 15 11 15 0.7333 1.0000 0.7333 D -4
oligos_7nt_mkv4_m34 MA1150.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 RORB 0.759 0.632 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_7nt_mkv4_m34 MA1536.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 NR2C2(var.2) 0.860 0.626 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv4_m34 MA0676.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 Nr2e1 0.730 0.598 11 9 9 11 0.8182 0.8182 1.0000 D 1
oligos_7nt_mkv4_m34 MA1534.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 NR1I3 0.702 0.574 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_7nt_mkv4_m34 MA0115.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 NR1H2::RXRA 0.820 0.531 11 17 11 17 0.6471 1.0000 0.6471 D -6
oligos_7nt_mkv4_m34 MA1537.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 NR2F1(var.2) 0.842 0.526 11 15 10 16 0.6250 0.9091 0.6667 D -5
oligos_7nt_mkv4_m34 MA1541.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 NR6A1 0.812 0.526 11 17 11 17 0.6471 1.0000 0.6471 D -1
oligos_7nt_mkv4_m34 MA1494.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 HNF4A(var.2) 0.835 0.522 11 15 10 16 0.6250 0.9091 0.6667 D -5
oligos_7nt_mkv4_m34 MA1574.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 THRB 0.811 0.507 11 15 10 16 0.6250 0.9091 0.6667 D -5
oligos_7nt_mkv4_m34 MA1550.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 PPARD 0.855 0.503 11 16 10 17 0.5882 0.9091 0.6250 D -6
oligos_7nt_mkv4_m34 MA0729.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 RARA 0.818 0.500 11 18 11 18 0.6111 1.0000 0.6111 D -6
oligos_7nt_mkv4_m34 MA0072.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 RORA(var.2) 0.746 0.497 11 14 10 15 0.6667 0.9091 0.7143 D -4
oligos_7nt_mkv4_m34 MA1110.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 NR1H4 0.709 0.491 11 11 9 13 0.6923 0.8182 0.8182 R 2
oligos_7nt_mkv4_m34 MA0859.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 Rarg 0.833 0.490 11 16 10 17 0.5882 0.9091 0.6250 D -6
oligos_7nt_mkv4_m34 MA0857.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 Rarb 0.828 0.487 11 16 10 17 0.5882 0.9091 0.6250 D 1
oligos_7nt_mkv4_m34 MA0855.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 RXRB 0.865 0.486 11 14 9 16 0.5625 0.8182 0.6429 D -5
oligos_7nt_mkv4_m34 MA0512.2 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 Rxra 0.865 0.486 11 14 9 16 0.5625 0.8182 0.6429 D -5
oligos_7nt_mkv4_m34 MA0677.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 Nr2f6 0.862 0.485 11 14 9 16 0.5625 0.8182 0.6429 D -5
oligos_7nt_mkv4_m34 MA0856.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 RXRG 0.860 0.484 11 14 9 16 0.5625 0.8182 0.6429 D -5
oligos_7nt_mkv4_m34 MA1552.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 RARB(var.3) 0.840 0.472 11 14 9 16 0.5625 0.8182 0.6429 R 2
oligos_7nt_mkv4_m34 MA0014.3 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 PAX5 0.733 0.471 11 12 9 14 0.6429 0.8182 0.7500 R 2
oligos_7nt_mkv4_m34 MA1538.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 NR2F1(var.3) 0.888 0.470 11 15 9 17 0.5294 0.8182 0.6000 R 2
oligos_7nt_mkv4_m34 MA1151.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 RORC 0.730 0.469 11 12 9 14 0.6429 0.8182 0.7500 D -3
oligos_7nt_mkv4_m34 MA1539.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 NR2F6(var.3) 0.884 0.468 11 15 9 17 0.5294 0.8182 0.6000 R 2
oligos_7nt_mkv4_m34 MA1553.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 RARG(var.3) 0.828 0.466 11 14 9 16 0.5625 0.8182 0.6429 R 2
oligos_7nt_mkv4_m34 MA0860.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 Rarg(var.2) 0.976 0.462 11 17 9 19 0.4737 0.8182 0.5294 D 2
oligos_7nt_mkv4_m34 MA1556.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 RXRG(var.2) 0.812 0.457 11 14 9 16 0.5625 0.8182 0.6429 D 2
oligos_7nt_mkv4_m34 MA0067.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 Pax2 0.775 0.452 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_7nt_mkv4_m34 MA0504.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 NR2C2 0.714 0.446 11 15 10 16 0.6250 0.9091 0.6667 D 1
oligos_7nt_mkv4_m34 MA1148.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 PPARA::RXRA 0.843 0.444 11 18 10 19 0.5263 0.9091 0.5556 D -8
oligos_7nt_mkv4_m34 MA0730.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 RARA(var.2) 0.933 0.442 11 17 9 19 0.4737 0.8182 0.5294 D -8
oligos_7nt_mkv4_m34 MA0728.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 Nr2f6(var.2) 0.832 0.441 11 15 9 17 0.5294 0.8182 0.6000 D -6
oligos_7nt_mkv4_m34 MA1555.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 RXRB(var.2) 0.779 0.438 11 14 9 16 0.5625 0.8182 0.6429 R 2
oligos_7nt_mkv4_m34 MA1576.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 THRB(var.3) 0.877 0.438 11 19 10 20 0.5000 0.9091 0.5263 R 1
oligos_7nt_mkv4_m34 MA0858.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 Rarb(var.2) 0.924 0.438 11 17 9 19 0.4737 0.8182 0.5294 D -8
oligos_7nt_mkv4_m34 MA0112.3 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 ESR1 0.918 0.435 11 17 9 19 0.4737 0.8182 0.5294 D 2
oligos_7nt_mkv4_m34 MA1575.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 THRB(var.2) 0.858 0.429 11 19 10 20 0.5000 0.9091 0.5263 D -9
oligos_7nt_mkv4_m34 MA0258.2 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 ESR2 0.963 0.428 11 15 8 18 0.4444 0.7273 0.5333 D 3
oligos_7nt_mkv4_m34 MA0065.2 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 Pparg::Rxra 0.786 0.416 11 15 9 17 0.5294 0.8182 0.6000 D -6
oligos_7nt_mkv4_m34 MA0494.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 Nr1h3::Rxra 0.711 0.412 11 19 11 19 0.5789 1.0000 0.5789 R 0
oligos_7nt_mkv4_m34 MA1146.1 oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34 NR1H4::RXRA 0.762 0.404 11 15 9 17 0.5294 0.8182 0.6000 R 2 
 Host name	pedagogix
 Job started	2020-04-13.231118
 Job done	2020-04-13.231158
 Seconds	5.29
	user	5.29
	system	0.83
	cuser	31.26
;	csystem	2.41