One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m39/peak-motifs_oligos_7nt_mkv4_m39.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m39/peak-motifs_oligos_7nt_mkv4_m39_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m39_shift4 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m39_shift4 (oligos_7nt_mkv4_m39oligos_7nt_mkv4_m39)
; oligos_7nt_mkv4_m39 (oligos_7nt_mkv4_m39oligos_7nt_mkv4_m39); m=0 (reference); ncol1=12; shift=4; ncol=18; ----ssGGGGTGGAgg-- ; Alignment reference a 0 0 0 0 40 33 0 0 1 7 3 4 3 136 36 46 0 0 c 0 0 0 0 58 63 15 3 6 1 8 3 1 16 46 41 0 0 g 0 0 0 0 62 62 171 188 187 183 3 184 185 38 83 70 0 0 t 0 0 0 0 34 36 8 3 0 3 180 3 5 4 29 37 0 0

MA0528.2_shift4 (ZNF263)
; oligos_7nt_mkv4_m39 versus MA0528.2 (ZNF263); m=1/8; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.784818; ----gsgGGGAGGAsg-- ; cor=; Ncor= a 0 0 0 0 13287.0 11016.0 13001.0 1610.0 789.0 950.0 53900.0 830.0 695.0 52499.0 9539.0 8436.0 0 0 c 0 0 0 0 13040.0 14909.0 6183.0 1659.0 1544.0 972.0 1660.0 966.0 2190.0 1758.0 15413.0 11689.0 0 0 g 0 0 0 0 20283.0 17883.0 28912.0 51804.0 52818.0 53435.0 163.0 52875.0 52741.0 1448.0 24825.0 25115.0 0 0 t 0 0 0 0 9733.0 12535.0 8247.0 1270.0 1192.0 986.0 620.0 1672.0 717.0 638.0 6566.0 11103.0 0 0

MA0039.4_rc_shift5 (KLF4_rc)
; oligos_7nt_mkv4_m39 versus MA0039.4_rc (KLF4_rc); m=2/8; ncol2=12; w=11; offset=1; strand=R; shift=5; score= 0.6966; -----sdGGGTGGGGss- ; cor=; Ncor= a 0 0 0 0 0 12219.0 15012.0 2565.0 1218.0 1129.0 3456.0 976.0 1969.0 4633.0 2560.0 11819.0 11484.0 0 c 0 0 0 0 0 14422.0 6292.0 1005.0 1870.0 1470.0 6598.0 793.0 1422.0 1214.0 1583.0 18473.0 14243.0 0 g 0 0 0 0 0 19217.0 18249.0 51045.0 51112.0 52366.0 161.0 52875.0 45405.0 47865.0 49209.0 14038.0 17520.0 0 t 0 0 0 0 0 9959.0 16264.0 1202.0 1617.0 852.0 45602.0 1173.0 7021.0 2105.0 2465.0 11487.0 12570.0 0

MA0599.1_rc_shift6 (KLF5_rc)
; oligos_7nt_mkv4_m39 versus MA0599.1_rc (KLF5_rc); m=3/8; ncol2=10; w=10; offset=2; strand=R; shift=6; score=0.634156; ------dGGGyGKGGc-- ; cor=; Ncor= a 0 0 0 0 0 0 4101.0 476.0 0.0 0.0 3378.0 0.0 565.0 1603.0 1711.0 2587.0 0 0 c 0 0 0 0 0 0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 7572.0 0 0 g 0 0 0 0 0 0 5595.0 13135.0 13611.0 13611.0 0.0 13611.0 9569.0 12008.0 11900.0 2023.0 0 0 t 0 0 0 0 0 0 3915.0 0.0 0.0 0.0 5051.0 0.0 3477.0 0.0 0.0 1429.0 0 0

MA1600.1_rc_shift2 (ZNF684_rc)
; oligos_7nt_mkv4_m39 versus MA1600.1_rc (ZNF684_rc); m=4/8; ncol2=18; w=12; offset=-2; strand=R; shift=2; score=0.540715; --ymAAGGGGTGGACTGT ; cor=; Ncor= a 0 0 127.0 619.0 1224.0 1107.0 3.0 92.0 6.0 61.0 220.0 67.0 10.0 1259.0 74.0 131.0 19.0 19.0 c 0 0 326.0 514.0 14.0 18.0 0.0 7.0 10.0 63.0 57.0 2.0 25.0 59.0 1135.0 110.0 9.0 68.0 g 0 0 201.0 168.0 59.0 129.0 1263.0 1229.0 1253.0 1226.0 9.0 1221.0 1236.0 14.0 216.0 11.0 1253.0 24.0 t 0 0 606.0 216.0 56.0 249.0 0.0 7.0 44.0 3.0 1012.0 40.0 13.0 9.0 60.0 1184.0 9.0 1238.0

MA0747.1_rc_shift2 (SP8_rc)
; oligos_7nt_mkv4_m39 versus MA0747.1_rc (SP8_rc); m=5/8; ncol2=12; w=10; offset=-2; strand=R; shift=2; score=0.500627; --rGkGGGcGTGky---- ; cor=; Ncor= a 0 0 82.0 39.0 3.0 15.0 0.0 2.0 39.0 5.0 2.0 13.0 4.0 10.0 0 0 0 0 c 0 0 1.0 21.0 6.0 4.0 3.0 6.0 167.0 1.0 1.0 0.0 0.0 78.0 0 0 0 0 g 0 0 52.0 167.0 77.0 167.0 167.0 167.0 37.0 167.0 33.0 167.0 113.0 27.0 0 0 0 0 t 0 0 31.0 13.0 90.0 0.0 2.0 5.0 25.0 7.0 133.0 25.0 54.0 52.0 0 0 0 0

MA1578.1_rc_shift3 (VEZF1_rc)
; oligos_7nt_mkv4_m39 versus MA1578.1_rc (VEZF1_rc); m=6/8; ncol2=10; w=9; offset=-1; strand=R; shift=3; score=0.49473; ---warkGGGGGG----- ; cor=; Ncor= a 0 0 0 339.0 377.0 334.0 125.0 8.0 4.0 0.0 0.0 0.0 0.0 0 0 0 0 0 c 0 0 0 152.0 211.0 70.0 110.0 3.0 0.0 0.0 0.0 0.0 137.0 0 0 0 0 0 g 0 0 0 173.0 171.0 550.0 357.0 977.0 989.0 997.0 995.0 997.0 790.0 0 0 0 0 0 t 0 0 0 333.0 240.0 44.0 406.0 10.0 6.0 2.0 4.0 1.0 71.0 0 0 0 0 0

MA0130.1_rc_shift9 (ZNF354C_rc)
; oligos_7nt_mkv4_m39 versus MA0130.1_rc (ZNF354C_rc); m=7/8; ncol2=6; w=6; offset=5; strand=R; shift=9; score=0.486204; ---------GTGGAk--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 11.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 3.0 0 0 0 g 0 0 0 0 0 0 0 0 0 15.0 0.0 16.0 16.0 2.0 6.0 0 0 0 t 0 0 0 0 0 0 0 0 0 0.0 16.0 0.0 0.0 3.0 7.0 0 0 0

MA0753.2_rc_shift0 (ZNF740_rc)
; oligos_7nt_mkv4_m39 versus MA0753.2_rc (ZNF740_rc); m=8/8; ncol2=13; w=9; offset=-4; strand=R; shift=0; score=0.409611; gTGGGGGGGGyrg----- ; cor=; Ncor= a 246.0 134.0 4.0 3.0 6.0 11.0 15.0 16.0 1.0 49.0 312.0 378.0 185.0 0 0 0 0 0 c 54.0 68.0 6.0 3.0 7.0 3.0 7.0 4.0 14.0 37.0 1055.0 72.0 182.0 0 0 0 0 0 g 1055.0 239.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 343.0 677.0 502.0 0 0 0 0 0 t 207.0 1055.0 115.0 2.0 10.0 23.0 22.0 18.0 110.0 60.0 727.0 162.0 186.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m39_shift4 (oligos_7nt_mkv4_m39oligos_7nt_mkv4_m39)				; oligos_7nt_mkv4_m39 (oligos_7nt_mkv4_m39oligos_7nt_mkv4_m39); m=0 (reference); ncol1=12; shift=4; ncol=18; ----ssGGGGTGGAgg-- ; Alignment reference a 0 0 0 0 40 33 0 0 1 7 3 4 3 136 36 46 0 0 c 0 0 0 0 58 63 15 3 6 1 8 3 1 16 46 41 0 0 g 0 0 0 0 62 62 171 188 187 183 3 184 185 38 83 70 0 0 t 0 0 0 0 34 36 8 3 0 3 180 3 5 4 29 37 0 0
MA0528.2_shift4 (ZNF263)				; oligos_7nt_mkv4_m39 versus MA0528.2 (ZNF263); m=1/8; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.784818; ----gsgGGGAGGAsg-- ; cor=; Ncor= a 0 0 0 0 13287.0 11016.0 13001.0 1610.0 789.0 950.0 53900.0 830.0 695.0 52499.0 9539.0 8436.0 0 0 c 0 0 0 0 13040.0 14909.0 6183.0 1659.0 1544.0 972.0 1660.0 966.0 2190.0 1758.0 15413.0 11689.0 0 0 g 0 0 0 0 20283.0 17883.0 28912.0 51804.0 52818.0 53435.0 163.0 52875.0 52741.0 1448.0 24825.0 25115.0 0 0 t 0 0 0 0 9733.0 12535.0 8247.0 1270.0 1192.0 986.0 620.0 1672.0 717.0 638.0 6566.0 11103.0 0 0
MA0039.4_rc_shift5 (KLF4_rc)				; oligos_7nt_mkv4_m39 versus MA0039.4_rc (KLF4_rc); m=2/8; ncol2=12; w=11; offset=1; strand=R; shift=5; score= 0.6966; -----sdGGGTGGGGss- ; cor=; Ncor= a 0 0 0 0 0 12219.0 15012.0 2565.0 1218.0 1129.0 3456.0 976.0 1969.0 4633.0 2560.0 11819.0 11484.0 0 c 0 0 0 0 0 14422.0 6292.0 1005.0 1870.0 1470.0 6598.0 793.0 1422.0 1214.0 1583.0 18473.0 14243.0 0 g 0 0 0 0 0 19217.0 18249.0 51045.0 51112.0 52366.0 161.0 52875.0 45405.0 47865.0 49209.0 14038.0 17520.0 0 t 0 0 0 0 0 9959.0 16264.0 1202.0 1617.0 852.0 45602.0 1173.0 7021.0 2105.0 2465.0 11487.0 12570.0 0
MA0599.1_rc_shift6 (KLF5_rc)				; oligos_7nt_mkv4_m39 versus MA0599.1_rc (KLF5_rc); m=3/8; ncol2=10; w=10; offset=2; strand=R; shift=6; score=0.634156; ------dGGGyGKGGc-- ; cor=; Ncor= a 0 0 0 0 0 0 4101.0 476.0 0.0 0.0 3378.0 0.0 565.0 1603.0 1711.0 2587.0 0 0 c 0 0 0 0 0 0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 7572.0 0 0 g 0 0 0 0 0 0 5595.0 13135.0 13611.0 13611.0 0.0 13611.0 9569.0 12008.0 11900.0 2023.0 0 0 t 0 0 0 0 0 0 3915.0 0.0 0.0 0.0 5051.0 0.0 3477.0 0.0 0.0 1429.0 0 0
MA1600.1_rc_shift2 (ZNF684_rc)				; oligos_7nt_mkv4_m39 versus MA1600.1_rc (ZNF684_rc); m=4/8; ncol2=18; w=12; offset=-2; strand=R; shift=2; score=0.540715; --ymAAGGGGTGGACTGT ; cor=; Ncor= a 0 0 127.0 619.0 1224.0 1107.0 3.0 92.0 6.0 61.0 220.0 67.0 10.0 1259.0 74.0 131.0 19.0 19.0 c 0 0 326.0 514.0 14.0 18.0 0.0 7.0 10.0 63.0 57.0 2.0 25.0 59.0 1135.0 110.0 9.0 68.0 g 0 0 201.0 168.0 59.0 129.0 1263.0 1229.0 1253.0 1226.0 9.0 1221.0 1236.0 14.0 216.0 11.0 1253.0 24.0 t 0 0 606.0 216.0 56.0 249.0 0.0 7.0 44.0 3.0 1012.0 40.0 13.0 9.0 60.0 1184.0 9.0 1238.0
MA0747.1_rc_shift2 (SP8_rc)				; oligos_7nt_mkv4_m39 versus MA0747.1_rc (SP8_rc); m=5/8; ncol2=12; w=10; offset=-2; strand=R; shift=2; score=0.500627; --rGkGGGcGTGky---- ; cor=; Ncor= a 0 0 82.0 39.0 3.0 15.0 0.0 2.0 39.0 5.0 2.0 13.0 4.0 10.0 0 0 0 0 c 0 0 1.0 21.0 6.0 4.0 3.0 6.0 167.0 1.0 1.0 0.0 0.0 78.0 0 0 0 0 g 0 0 52.0 167.0 77.0 167.0 167.0 167.0 37.0 167.0 33.0 167.0 113.0 27.0 0 0 0 0 t 0 0 31.0 13.0 90.0 0.0 2.0 5.0 25.0 7.0 133.0 25.0 54.0 52.0 0 0 0 0
MA1578.1_rc_shift3 (VEZF1_rc)				; oligos_7nt_mkv4_m39 versus MA1578.1_rc (VEZF1_rc); m=6/8; ncol2=10; w=9; offset=-1; strand=R; shift=3; score=0.49473; ---warkGGGGGG----- ; cor=; Ncor= a 0 0 0 339.0 377.0 334.0 125.0 8.0 4.0 0.0 0.0 0.0 0.0 0 0 0 0 0 c 0 0 0 152.0 211.0 70.0 110.0 3.0 0.0 0.0 0.0 0.0 137.0 0 0 0 0 0 g 0 0 0 173.0 171.0 550.0 357.0 977.0 989.0 997.0 995.0 997.0 790.0 0 0 0 0 0 t 0 0 0 333.0 240.0 44.0 406.0 10.0 6.0 2.0 4.0 1.0 71.0 0 0 0 0 0
MA0130.1_rc_shift9 (ZNF354C_rc)				; oligos_7nt_mkv4_m39 versus MA0130.1_rc (ZNF354C_rc); m=7/8; ncol2=6; w=6; offset=5; strand=R; shift=9; score=0.486204; ---------GTGGAk--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 11.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 3.0 0 0 0 g 0 0 0 0 0 0 0 0 0 15.0 0.0 16.0 16.0 2.0 6.0 0 0 0 t 0 0 0 0 0 0 0 0 0 0.0 16.0 0.0 0.0 3.0 7.0 0 0 0
MA0753.2_rc_shift0 (ZNF740_rc)				; oligos_7nt_mkv4_m39 versus MA0753.2_rc (ZNF740_rc); m=8/8; ncol2=13; w=9; offset=-4; strand=R; shift=0; score=0.409611; gTGGGGGGGGyrg----- ; cor=; Ncor= a 246.0 134.0 4.0 3.0 6.0 11.0 15.0 16.0 1.0 49.0 312.0 378.0 185.0 0 0 0 0 0 c 54.0 68.0 6.0 3.0 7.0 3.0 7.0 4.0 14.0 37.0 1055.0 72.0 182.0 0 0 0 0 0 g 1055.0 239.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 343.0 677.0 502.0 0 0 0 0 0 t 207.0 1055.0 115.0 2.0 10.0 23.0 22.0 18.0 110.0 60.0 727.0 162.0 186.0 0 0 0 0 0