Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4.tf
		file1	1	12	449
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv4_m4 MA1130.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 FOSL2::JUN 0.966 0.966 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv4_m4 MA1134.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 FOS::JUNB 0.902 0.902 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m4 MA1141.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 FOS::JUND 0.970 0.895 12 13 12 13 0.9231 1.0000 0.9231 R -1
oligos_7nt_mkv4_m4 MA0477.2 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 FOSL1 0.968 0.894 12 13 12 13 0.9231 1.0000 0.9231 D -1
oligos_7nt_mkv4_m4 MA1634.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 BATF 0.974 0.893 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_7nt_mkv4_m4 MA0462.2 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 BATF::JUN 0.974 0.893 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_7nt_mkv4_m4 MA1128.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 FOSL1::JUN 0.966 0.892 12 13 12 13 0.9231 1.0000 0.9231 D -1
oligos_7nt_mkv4_m4 MA0835.2 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 BATF3 0.967 0.886 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_7nt_mkv4_m4 MA1137.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 FOSL1::JUNB 0.954 0.881 12 13 12 13 0.9231 1.0000 0.9231 D -1
oligos_7nt_mkv4_m4 MA0491.2 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 JUND 0.952 0.878 12 13 12 13 0.9231 1.0000 0.9231 D -1
oligos_7nt_mkv4_m4 MA0490.2 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 JUNB 0.948 0.875 12 13 12 13 0.9231 1.0000 0.9231 D -1
oligos_7nt_mkv4_m4 MA0476.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 FOS 0.954 0.874 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_7nt_mkv4_m4 MA1622.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 Smad2::Smad3 0.986 0.845 12 14 12 14 0.8571 1.0000 0.8571 D -2
oligos_7nt_mkv4_m4 MA0478.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 FOSL2 0.911 0.835 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_7nt_mkv4_m4 MA0841.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 NFE2 0.903 0.827 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_7nt_mkv4_m4 MA1633.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 BACH1 0.880 0.812 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_7nt_mkv4_m4 MA0099.3 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 FOS::JUN 0.965 0.804 12 10 10 12 0.8333 0.8333 1.0000 R 0
oligos_7nt_mkv4_m4 MA1135.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 FOSB::JUNB 0.954 0.795 12 10 10 12 0.8333 0.8333 1.0000 D 0
oligos_7nt_mkv4_m4 MA1144.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 FOSL2::JUND 0.953 0.794 12 10 10 12 0.8333 0.8333 1.0000 D 0
oligos_7nt_mkv4_m4 MA1138.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 FOSL2::JUNB 0.952 0.794 12 10 10 12 0.8333 0.8333 1.0000 D 0
oligos_7nt_mkv4_m4 MA1142.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 FOSL1::JUND 0.943 0.785 12 10 10 12 0.8333 0.8333 1.0000 D 0
oligos_7nt_mkv4_m4 MA1132.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 JUN::JUNB 0.927 0.773 12 10 10 12 0.8333 0.8333 1.0000 D 0
oligos_7nt_mkv4_m4 MA0496.3 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 MAFK 0.871 0.697 12 15 12 15 0.8000 1.0000 0.8000 D -1
oligos_7nt_mkv4_m4 MA0655.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 JDP2 0.920 0.690 12 9 9 12 0.7500 0.7500 1.0000 D 1
oligos_7nt_mkv4_m4 MA0489.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 JUN(var.2) 0.917 0.672 12 14 11 15 0.7333 0.9167 0.7857 R 1
oligos_7nt_mkv4_m4 MA0591.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 Bach1::Mafk 0.804 0.643 12 15 12 15 0.8000 1.0000 0.8000 D -2
oligos_7nt_mkv4_m4 MA0150.2 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 Nfe2l2 0.773 0.618 12 15 12 15 0.8000 1.0000 0.8000 D -3
oligos_7nt_mkv4_m4 MA0089.2 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 NFE2L1 0.809 0.607 12 16 12 16 0.7500 1.0000 0.7500 D -2
oligos_7nt_mkv4_m4 MA1101.2 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 BACH2 0.877 0.554 12 19 12 19 0.6316 1.0000 0.6316 D -4
oligos_7nt_mkv4_m4 MA0501.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 MAF::NFE2 0.802 0.551 12 15 11 16 0.6875 0.9167 0.7333 D 1
oligos_7nt_mkv4_m4 MA1114.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 PBX3 0.700 0.494 12 17 12 17 0.7059 1.0000 0.7059 R -5
oligos_7nt_mkv4_m4 MA0067.1 oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4 Pax2 0.812 0.437 12 8 7 13 0.5385 0.5833 0.8750 R -1 
 Host name	pedagogix
 Job started	2020-04-13.230327
 Job done	2020-04-13.230408
 Seconds	5.96
	user	5.96
	system	0.8
	cuser	31.81
;	csystem	1.84