Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m42/peak-motifs_oligos_7nt_mkv4_m42_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m42/peak-motifs_oligos_7nt_mkv4_m42.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m42/peak-motifs_oligos_7nt_mkv4_m42_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m42/peak-motifs_oligos_7nt_mkv4_m42.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m42/peak-motifs_oligos_7nt_mkv4_m42_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m42/peak-motifs_oligos_7nt_mkv4_m42_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m42/peak-motifs_oligos_7nt_mkv4_m42_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m42/peak-motifs_oligos_7nt_mkv4_m42_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m42/peak-motifs_oligos_7nt_mkv4_m42_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m42/peak-motifs_oligos_7nt_mkv4_m42_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m42/peak-motifs_oligos_7nt_mkv4_m42.tf
		file1	1	11	135
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv4_m42 MA0476.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 FOS 0.836 0.836 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv4_m42 MA1634.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 BATF 0.804 0.804 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m42 MA0462.2 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 BATF::JUN 0.799 0.799 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m42 MA0835.2 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 BATF3 0.783 0.783 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m42 MA0841.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 NFE2 0.756 0.756 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m42 MA1138.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 FOSL2::JUNB 0.830 0.755 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv4_m42 MA1130.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 FOSL2::JUN 0.821 0.752 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_7nt_mkv4_m42 MA1142.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 FOSL1::JUND 0.826 0.751 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv4_m42 MA1135.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 FOSB::JUNB 0.822 0.747 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv4_m42 MA1134.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 FOS::JUNB 0.814 0.746 11 12 11 12 0.9167 1.0000 0.9167 R -1
oligos_7nt_mkv4_m42 MA1144.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 FOSL2::JUND 0.820 0.745 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_7nt_mkv4_m42 MA0099.3 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 FOS::JUN 0.814 0.740 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv4_m42 MA1137.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 FOSL1::JUNB 0.811 0.686 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_7nt_mkv4_m42 MA0477.2 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 FOSL1 0.807 0.683 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_7nt_mkv4_m42 MA0478.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 FOSL2 0.814 0.679 11 11 10 12 0.8333 0.9091 0.9091 R 1
oligos_7nt_mkv4_m42 MA1128.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 FOSL1::JUN 0.798 0.675 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_7nt_mkv4_m42 MA0491.2 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 JUND 0.796 0.674 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_7nt_mkv4_m42 MA1141.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 FOS::JUND 0.796 0.674 11 13 11 13 0.8462 1.0000 0.8462 D -1
oligos_7nt_mkv4_m42 MA0490.2 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 JUNB 0.795 0.672 11 13 11 13 0.8462 1.0000 0.8462 D -1
oligos_7nt_mkv4_m42 MA1132.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 JUN::JUNB 0.739 0.672 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_7nt_mkv4_m42 MA1639.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 MEIS1(var.2) 0.792 0.671 11 13 11 13 0.8462 1.0000 0.8462 D -2
oligos_7nt_mkv4_m42 MA1113.2 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 PBX2 0.792 0.670 11 13 11 13 0.8462 1.0000 0.8462 D -2
oligos_7nt_mkv4_m42 MA0070.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 PBX1 0.719 0.659 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_7nt_mkv4_m42 MA1622.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 Smad2::Smad3 0.828 0.650 11 14 11 14 0.7857 1.0000 0.7857 R -1
oligos_7nt_mkv4_m42 MA0655.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 JDP2 0.774 0.633 11 9 9 11 0.8182 0.8182 1.0000 D 1
oligos_7nt_mkv4_m42 MA1633.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 BACH1 0.738 0.625 11 13 11 13 0.8462 1.0000 0.8462 D 0
oligos_7nt_mkv4_m42 MA1640.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 MEIS2(var.2) 0.781 0.573 11 15 11 15 0.7333 1.0000 0.7333 R -3
oligos_7nt_mkv4_m42 MA0489.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 JUN(var.2) 0.832 0.555 11 14 10 15 0.6667 0.9091 0.7143 R 1
oligos_7nt_mkv4_m42 MA0496.3 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 MAFK 0.724 0.531 11 15 11 15 0.7333 1.0000 0.7333 D -1
oligos_7nt_mkv4_m42 MA0611.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 Dux 0.710 0.516 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv4_m42 MA0468.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 DUX4 0.724 0.501 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_7nt_mkv4_m42 MA0089.2 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 NFE2L1 0.704 0.484 11 16 11 16 0.6875 1.0000 0.6875 D -2
oligos_7nt_mkv4_m42 MA0790.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 POU4F1 0.709 0.472 11 14 10 15 0.6667 0.9091 0.7143 D 1
oligos_7nt_mkv4_m42 MA0038.2 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 GFI1 0.723 0.465 11 12 9 14 0.6429 0.8182 0.7500 D 2
oligos_7nt_mkv4_m42 MA1101.2 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 BACH2 0.770 0.446 11 19 11 19 0.5789 1.0000 0.5789 D -4
oligos_7nt_mkv4_m42 MA0501.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 MAF::NFE2 0.700 0.438 11 15 10 16 0.6250 0.9091 0.6667 D 1
oligos_7nt_mkv4_m42 MA0483.1 oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42 Gfi1b 0.714 0.408 11 11 8 14 0.5714 0.7273 0.7273 D 3 
 Host name	pedagogix
 Job started	2020-04-13.231258
 Job done	2020-04-13.231347
 Seconds	7.21
	user	7.21
	system	1.17
	cuser	38.34
;	csystem	2.06