Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m46/peak-motifs_oligos_7nt_mkv4_m46_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m46/peak-motifs_oligos_7nt_mkv4_m46.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m46/peak-motifs_oligos_7nt_mkv4_m46_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m46/peak-motifs_oligos_7nt_mkv4_m46.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m46/peak-motifs_oligos_7nt_mkv4_m46_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m46/peak-motifs_oligos_7nt_mkv4_m46_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m46/peak-motifs_oligos_7nt_mkv4_m46_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m46/peak-motifs_oligos_7nt_mkv4_m46_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m46/peak-motifs_oligos_7nt_mkv4_m46_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m46/peak-motifs_oligos_7nt_mkv4_m46_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m46/peak-motifs_oligos_7nt_mkv4_m46.tf
		file1	1	12	225
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv4_m46 MA1620.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 Ptf1a(var.3) 0.855 0.855 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv4_m46 MA1621.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 Rbpjl 0.844 0.724 12 14 12 14 0.8571 1.0000 0.8571 R -1
oligos_7nt_mkv4_m46 MA1641.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 MYF5 0.717 0.717 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m46 MA0745.2 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 SNAI2 0.775 0.715 12 13 12 13 0.9231 1.0000 0.9231 R -1
oligos_7nt_mkv4_m46 MA1619.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 Ptf1a(var.2) 0.711 0.711 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv4_m46 MA0783.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 PKNOX2 0.705 0.705 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m46 MA0499.2 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 MYOD1 0.752 0.694 12 13 12 13 0.9231 1.0000 0.9231 R -1
oligos_7nt_mkv4_m46 MA0819.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 CLOCK 0.827 0.689 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m46 MA0667.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 MYF6 0.811 0.676 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m46 MA0820.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 FIGLA 0.782 0.651 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_7nt_mkv4_m46 MA1618.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 Ptf1a 0.704 0.650 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_7nt_mkv4_m46 MA1559.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 SNAI3 0.749 0.624 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m46 MA1558.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 SNAI1 0.747 0.623 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m46 MA0626.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 Npas2 0.741 0.617 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m46 MA1570.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 TFAP4(var.2) 0.740 0.617 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m46 MA0665.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 MSC 0.726 0.605 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_7nt_mkv4_m46 MA1108.2 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 MXI1 0.714 0.595 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_7nt_mkv4_m46 MA1467.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 ATOH1(var.2) 0.705 0.587 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_7nt_mkv4_m46 MA0743.2 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 SCRT1 0.737 0.553 12 16 12 16 0.7500 1.0000 0.7500 D -4
oligos_7nt_mkv4_m46 MA0744.2 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 SCRT2 0.719 0.539 12 16 12 16 0.7500 1.0000 0.7500 D -4
oligos_7nt_mkv4_m46 MA0806.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 TBX4 0.800 0.534 12 8 8 12 0.6667 0.6667 1.0000 D 4
oligos_7nt_mkv4_m46 MA0807.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 TBX5 0.794 0.529 12 8 8 12 0.6667 0.6667 1.0000 D 4
oligos_7nt_mkv4_m46 MA0805.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 TBX1 0.760 0.507 12 8 8 12 0.6667 0.6667 1.0000 D 4
oligos_7nt_mkv4_m46 MA0803.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 TBX15 0.744 0.496 12 8 8 12 0.6667 0.6667 1.0000 D 4
oligos_7nt_mkv4_m46 MA0801.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 MGA 0.743 0.495 12 8 8 12 0.6667 0.6667 1.0000 D 4
oligos_7nt_mkv4_m46 MA0622.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 Mlxip 0.701 0.467 12 8 8 12 0.6667 0.6667 1.0000 R 2
oligos_7nt_mkv4_m46 MA0802.1 oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46 TBR1 0.776 0.443 12 10 8 14 0.5714 0.6667 0.8000 D 4 
 Host name	pedagogix
 Job started	2020-04-13.231356
 Job done	2020-04-13.231426
 Seconds	4.43
	user	4.43
	system	0.46
	cuser	23.43
;	csystem	1.4