One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m46/peak-motifs_oligos_7nt_mkv4_m46.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m46/peak-motifs_oligos_7nt_mkv4_m46_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m46_shift4 ; 28 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m46_shift4 (oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46)
; oligos_7nt_mkv4_m46 (oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46); m=0 (reference); ncol1=12; shift=4; ncol=16; ----gvACAAGTGTky ; Alignment reference a 0 0 0 0 52 70 210 3 212 161 18 2 3 2 42 47 c 0 0 0 0 52 58 4 217 6 16 25 4 3 7 56 70 g 0 0 0 0 72 62 3 2 2 40 180 2 215 8 63 49 t 0 0 0 0 49 35 8 3 5 8 2 217 4 208 64 59

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; oligos_7nt_mkv4_m46 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=1/27; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.854974; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0

MA1621.1_rc_shift3 (Rbpjl_rc)
; oligos_7nt_mkv4_m46 versus MA1621.1_rc (Rbpjl_rc); m=2/27; ncol2=14; w=12; offset=-1; strand=R; shift=3; score=0.723844; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0

MA1641.1_shift4 (MYF5)
; oligos_7nt_mkv4_m46 versus MA1641.1 (MYF5); m=3/27; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.717432; ----gvaCAGCTGtbc ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0

MA0745.2_rc_shift3 (SNAI2_rc)
; oligos_7nt_mkv4_m46 versus MA0745.2_rc (SNAI2_rc); m=4/27; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.715199; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0

MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)
; oligos_7nt_mkv4_m46 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=5/27; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.711246; ----rmaCAGCTGtky ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0

MA0783.1_shift4 (PKNOX2)
; oligos_7nt_mkv4_m46 versus MA0783.1 (PKNOX2); m=6/27; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.704948; ----TGACAGsTGTCA ; cor=; Ncor= a 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 c 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 g 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 t 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0

MA0499.2_rc_shift3 (MYOD1_rc)
; oligos_7nt_mkv4_m46 versus MA0499.2_rc (MYOD1_rc); m=7/27; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.694341; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0

MA0819.1_shift5 (CLOCK)
; oligos_7nt_mkv4_m46 versus MA0819.1 (CLOCK); m=8/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.689041; -----aACACGTGty- ; cor=; Ncor= a 0 0 0 0 0 226.0 429.0 11.0 429.0 16.0 40.0 3.0 0.0 1.0 89.0 0 c 0 0 0 0 0 35.0 85.0 429.0 5.0 429.0 0.0 5.0 3.0 152.0 128.0 0 g 0 0 0 0 0 93.0 89.0 2.0 15.0 0.0 429.0 5.0 429.0 110.0 39.0 0 t 0 0 0 0 0 75.0 13.0 2.0 0.0 28.0 0.0 429.0 9.0 429.0 174.0 0

MA0667.1_shift5 (MYF6)
; oligos_7nt_mkv4_m46 versus MA0667.1 (MYF6); m=9/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.675947; -----AACArCTGTY- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 c 0 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 g 0 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 t 0 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0

MA0820.1_rc_shift5 (FIGLA_rc)
; oligos_7nt_mkv4_m46 versus MA0820.1_rc (FIGLA_rc); m=10/27; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.651472; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0

MA1618.1_shift4 (Ptf1a)
; oligos_7nt_mkv4_m46 versus MA1618.1 (Ptf1a); m=11/27; ncol2=13; w=12; offset=0; strand=D; shift=4; score=0.649962; ----dmaCAGATGttk ; cor=; Ncor= a 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 c 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 g 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 t 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0

MA1559.1_shift5 (SNAI3)
; oligos_7nt_mkv4_m46 versus MA1559.1 (SNAI3); m=12/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.624394; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0

MA1558.1_shift5 (SNAI1)
; oligos_7nt_mkv4_m46 versus MA1558.1 (SNAI1); m=13/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.622662; -----drCAGGTGyr- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0

MA0626.1_shift5 (Npas2)
; oligos_7nt_mkv4_m46 versus MA0626.1 (Npas2); m=14/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.617218; -----dsCACGTGtm- ; cor=; Ncor= a 0 0 0 0 0 273.0 154.0 0.0 999.0 81.0 81.0 0.0 81.0 74.0 297.0 0 c 0 0 0 0 0 177.0 377.0 999.0 0.0 918.0 0.0 0.0 0.0 172.0 299.0 0 g 0 0 0 0 0 293.0 420.0 0.0 0.0 0.0 918.0 0.0 918.0 188.0 202.0 0 t 0 0 0 0 0 257.0 48.0 0.0 0.0 0.0 0.0 999.0 0.0 566.0 202.0 0

MA1570.1_shift5 (TFAP4(var.2))
; oligos_7nt_mkv4_m46 versus MA1570.1 (TFAP4(var.2)); m=15/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.616954; -----ahCAyrTGkt- ; cor=; Ncor= a 0 0 0 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 c 0 0 0 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 g 0 0 0 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 t 0 0 0 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0

MA0665.1_rc_shift5 (MSC_rc)
; oligos_7nt_mkv4_m46 versus MA0665.1_rc (MSC_rc); m=16/27; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.605362; -----AACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0

MA1108.2_rc_shift5 (MXI1_rc)
; oligos_7nt_mkv4_m46 versus MA1108.2_rc (MXI1_rc); m=17/27; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.594767; -----gmCATGTGby- ; cor=; Ncor= a 0 0 0 0 0 5366.0 6658.0 175.0 21541.0 0.0 468.0 7.0 460.0 3945.0 5212.0 0 c 0 0 0 0 0 5394.0 7228.0 21232.0 0.0 1542.0 18.0 170.0 97.0 6078.0 6326.0 0 g 0 0 0 0 0 6343.0 5329.0 114.0 507.0 0.0 21552.0 1.0 21382.0 5841.0 4724.0 0 t 0 0 0 0 0 4945.0 2833.0 527.0 0.0 20506.0 10.0 21870.0 109.0 6184.0 5786.0 0

MA1467.1_rc_shift5 (ATOH1(var.2)_rc)
; oligos_7nt_mkv4_m46 versus MA1467.1_rc (ATOH1(var.2)_rc); m=18/27; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.58718; -----RACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 c 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 g 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 t 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0

MA0743.2_shift0 (SCRT1)
; oligos_7nt_mkv4_m46 versus MA0743.2 (SCRT1); m=19/27; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.552842; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0

MA0744.2_shift0 (SCRT2)
; oligos_7nt_mkv4_m46 versus MA0744.2 (SCRT2); m=20/27; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.538975; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0

MA0806.1_shift8 (TBX4)
; oligos_7nt_mkv4_m46 versus MA0806.1 (TBX4); m=21/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.533639; --------AGGTGTgA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0

MA0807.1_shift8 (TBX5)
; oligos_7nt_mkv4_m46 versus MA0807.1 (TBX5); m=22/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.529008; --------AGGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0

MA0805.1_shift8 (TBX1)
; oligos_7nt_mkv4_m46 versus MA0805.1 (TBX1); m=23/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.506982; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 11931.0 1560.0 0.0 28.0 0.0 142.0 141.0 11931.0 c 0 0 0 0 0 0 0 0 113.0 711.0 0.0 214.0 5.0 613.0 720.0 33.0 g 0 0 0 0 0 0 0 0 1007.0 11931.0 11931.0 141.0 11931.0 109.0 11931.0 18.0 t 0 0 0 0 0 0 0 0 564.0 669.0 0.0 11931.0 0.0 11931.0 1039.0 0.0

MA0803.1_shift8 (TBX15)
; oligos_7nt_mkv4_m46 versus MA0803.1 (TBX15); m=24/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.496034; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10502.0 458.0 19.0 61.0 0.0 140.0 44.0 10502.0 c 0 0 0 0 0 0 0 0 74.0 101.0 7.0 175.0 8.0 435.0 454.0 71.0 g 0 0 0 0 0 0 0 0 664.0 10502.0 10502.0 245.0 10502.0 324.0 10502.0 306.0 t 0 0 0 0 0 0 0 0 112.0 103.0 0.0 10502.0 0.0 10502.0 937.0 96.0

MA0801.1_shift8 (MGA)
; oligos_7nt_mkv4_m46 versus MA0801.1 (MGA); m=25/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.495173; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 30489.0 4310.0 16.0 12.0 14.0 1042.0 689.0 30489.0 c 0 0 0 0 0 0 0 0 1151.0 3737.0 509.0 3534.0 1.0 3089.0 1753.0 110.0 g 0 0 0 0 0 0 0 0 8873.0 30489.0 30489.0 96.0 30489.0 381.0 30489.0 920.0 t 0 0 0 0 0 0 0 0 4160.0 1929.0 104.0 30489.0 11.0 30489.0 6465.0 274.0

MA0622.1_rc_shift6 (Mlxip_rc)
; oligos_7nt_mkv4_m46 versus MA0622.1_rc (Mlxip_rc); m=26/27; ncol2=8; w=8; offset=2; strand=R; shift=6; score=0.467273; ------mCACGTGv-- ; cor=; Ncor= a 0 0 0 0 0 0 499.0 0.0 999.0 0.0 0.0 0.0 0.0 263.0 0 0 c 0 0 0 0 0 0 250.0 999.0 0.0 999.0 0.0 0.0 0.0 421.0 0 0 g 0 0 0 0 0 0 63.0 0.0 0.0 0.0 999.0 0.0 999.0 263.0 0 0 t 0 0 0 0 0 0 188.0 0.0 0.0 0.0 0.0 999.0 0.0 53.0 0 0

MA0802.1_shift8 (TBR1)
; oligos_7nt_mkv4_m46 versus MA0802.1 (TBR1); m=27/27; ncol2=10; w=8; offset=4; strand=D; shift=8; score=0.443231; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 34509.0 6880.0 70.0 39.0 0.0 2386.0 1175.0 34509.0 c 0 0 0 0 0 0 0 0 359.0 3255.0 254.0 1759.0 6.0 4742.0 2551.0 90.0 g 0 0 0 0 0 0 0 0 3329.0 34509.0 34509.0 88.0 34509.0 157.0 34509.0 584.0 t 0 0 0 0 0 0 0 0 1433.0 4480.0 213.0 34509.0 4.0 34509.0 7001.0 205.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m46_shift4 (oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46)				; oligos_7nt_mkv4_m46 (oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46); m=0 (reference); ncol1=12; shift=4; ncol=16; ----gvACAAGTGTky ; Alignment reference a 0 0 0 0 52 70 210 3 212 161 18 2 3 2 42 47 c 0 0 0 0 52 58 4 217 6 16 25 4 3 7 56 70 g 0 0 0 0 72 62 3 2 2 40 180 2 215 8 63 49 t 0 0 0 0 49 35 8 3 5 8 2 217 4 208 64 59
MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)				; oligos_7nt_mkv4_m46 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=1/27; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.854974; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0
MA1621.1_rc_shift3 (Rbpjl_rc)				; oligos_7nt_mkv4_m46 versus MA1621.1_rc (Rbpjl_rc); m=2/27; ncol2=14; w=12; offset=-1; strand=R; shift=3; score=0.723844; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0
MA1641.1_shift4 (MYF5)				; oligos_7nt_mkv4_m46 versus MA1641.1 (MYF5); m=3/27; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.717432; ----gvaCAGCTGtbc ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0
MA0745.2_rc_shift3 (SNAI2_rc)				; oligos_7nt_mkv4_m46 versus MA0745.2_rc (SNAI2_rc); m=4/27; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.715199; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0
MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)				; oligos_7nt_mkv4_m46 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=5/27; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.711246; ----rmaCAGCTGtky ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0
MA0783.1_shift4 (PKNOX2)				; oligos_7nt_mkv4_m46 versus MA0783.1 (PKNOX2); m=6/27; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.704948; ----TGACAGsTGTCA ; cor=; Ncor= a 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 c 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 g 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 t 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0
MA0499.2_rc_shift3 (MYOD1_rc)				; oligos_7nt_mkv4_m46 versus MA0499.2_rc (MYOD1_rc); m=7/27; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.694341; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0
MA0819.1_shift5 (CLOCK)				; oligos_7nt_mkv4_m46 versus MA0819.1 (CLOCK); m=8/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.689041; -----aACACGTGty- ; cor=; Ncor= a 0 0 0 0 0 226.0 429.0 11.0 429.0 16.0 40.0 3.0 0.0 1.0 89.0 0 c 0 0 0 0 0 35.0 85.0 429.0 5.0 429.0 0.0 5.0 3.0 152.0 128.0 0 g 0 0 0 0 0 93.0 89.0 2.0 15.0 0.0 429.0 5.0 429.0 110.0 39.0 0 t 0 0 0 0 0 75.0 13.0 2.0 0.0 28.0 0.0 429.0 9.0 429.0 174.0 0
MA0667.1_shift5 (MYF6)				; oligos_7nt_mkv4_m46 versus MA0667.1 (MYF6); m=9/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.675947; -----AACArCTGTY- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 c 0 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 g 0 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 t 0 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0
MA0820.1_rc_shift5 (FIGLA_rc)				; oligos_7nt_mkv4_m46 versus MA0820.1_rc (FIGLA_rc); m=10/27; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.651472; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0
MA1618.1_shift4 (Ptf1a)				; oligos_7nt_mkv4_m46 versus MA1618.1 (Ptf1a); m=11/27; ncol2=13; w=12; offset=0; strand=D; shift=4; score=0.649962; ----dmaCAGATGttk ; cor=; Ncor= a 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 c 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 g 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 t 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0
MA1559.1_shift5 (SNAI3)				; oligos_7nt_mkv4_m46 versus MA1559.1 (SNAI3); m=12/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.624394; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0
MA1558.1_shift5 (SNAI1)				; oligos_7nt_mkv4_m46 versus MA1558.1 (SNAI1); m=13/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.622662; -----drCAGGTGyr- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0
MA0626.1_shift5 (Npas2)				; oligos_7nt_mkv4_m46 versus MA0626.1 (Npas2); m=14/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.617218; -----dsCACGTGtm- ; cor=; Ncor= a 0 0 0 0 0 273.0 154.0 0.0 999.0 81.0 81.0 0.0 81.0 74.0 297.0 0 c 0 0 0 0 0 177.0 377.0 999.0 0.0 918.0 0.0 0.0 0.0 172.0 299.0 0 g 0 0 0 0 0 293.0 420.0 0.0 0.0 0.0 918.0 0.0 918.0 188.0 202.0 0 t 0 0 0 0 0 257.0 48.0 0.0 0.0 0.0 0.0 999.0 0.0 566.0 202.0 0
MA1570.1_shift5 (TFAP4(var.2))				; oligos_7nt_mkv4_m46 versus MA1570.1 (TFAP4(var.2)); m=15/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.616954; -----ahCAyrTGkt- ; cor=; Ncor= a 0 0 0 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 c 0 0 0 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 g 0 0 0 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 t 0 0 0 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0
MA0665.1_rc_shift5 (MSC_rc)				; oligos_7nt_mkv4_m46 versus MA0665.1_rc (MSC_rc); m=16/27; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.605362; -----AACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0
MA1108.2_rc_shift5 (MXI1_rc)				; oligos_7nt_mkv4_m46 versus MA1108.2_rc (MXI1_rc); m=17/27; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.594767; -----gmCATGTGby- ; cor=; Ncor= a 0 0 0 0 0 5366.0 6658.0 175.0 21541.0 0.0 468.0 7.0 460.0 3945.0 5212.0 0 c 0 0 0 0 0 5394.0 7228.0 21232.0 0.0 1542.0 18.0 170.0 97.0 6078.0 6326.0 0 g 0 0 0 0 0 6343.0 5329.0 114.0 507.0 0.0 21552.0 1.0 21382.0 5841.0 4724.0 0 t 0 0 0 0 0 4945.0 2833.0 527.0 0.0 20506.0 10.0 21870.0 109.0 6184.0 5786.0 0
MA1467.1_rc_shift5 (ATOH1(var.2)_rc)				; oligos_7nt_mkv4_m46 versus MA1467.1_rc (ATOH1(var.2)_rc); m=18/27; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.58718; -----RACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 c 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 g 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 t 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0
MA0743.2_shift0 (SCRT1)				; oligos_7nt_mkv4_m46 versus MA0743.2 (SCRT1); m=19/27; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.552842; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0
MA0744.2_shift0 (SCRT2)				; oligos_7nt_mkv4_m46 versus MA0744.2 (SCRT2); m=20/27; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.538975; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0
MA0806.1_shift8 (TBX4)				; oligos_7nt_mkv4_m46 versus MA0806.1 (TBX4); m=21/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.533639; --------AGGTGTgA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0
MA0807.1_shift8 (TBX5)				; oligos_7nt_mkv4_m46 versus MA0807.1 (TBX5); m=22/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.529008; --------AGGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0
MA0805.1_shift8 (TBX1)				; oligos_7nt_mkv4_m46 versus MA0805.1 (TBX1); m=23/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.506982; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 11931.0 1560.0 0.0 28.0 0.0 142.0 141.0 11931.0 c 0 0 0 0 0 0 0 0 113.0 711.0 0.0 214.0 5.0 613.0 720.0 33.0 g 0 0 0 0 0 0 0 0 1007.0 11931.0 11931.0 141.0 11931.0 109.0 11931.0 18.0 t 0 0 0 0 0 0 0 0 564.0 669.0 0.0 11931.0 0.0 11931.0 1039.0 0.0
MA0803.1_shift8 (TBX15)				; oligos_7nt_mkv4_m46 versus MA0803.1 (TBX15); m=24/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.496034; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10502.0 458.0 19.0 61.0 0.0 140.0 44.0 10502.0 c 0 0 0 0 0 0 0 0 74.0 101.0 7.0 175.0 8.0 435.0 454.0 71.0 g 0 0 0 0 0 0 0 0 664.0 10502.0 10502.0 245.0 10502.0 324.0 10502.0 306.0 t 0 0 0 0 0 0 0 0 112.0 103.0 0.0 10502.0 0.0 10502.0 937.0 96.0
MA0801.1_shift8 (MGA)				; oligos_7nt_mkv4_m46 versus MA0801.1 (MGA); m=25/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.495173; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 30489.0 4310.0 16.0 12.0 14.0 1042.0 689.0 30489.0 c 0 0 0 0 0 0 0 0 1151.0 3737.0 509.0 3534.0 1.0 3089.0 1753.0 110.0 g 0 0 0 0 0 0 0 0 8873.0 30489.0 30489.0 96.0 30489.0 381.0 30489.0 920.0 t 0 0 0 0 0 0 0 0 4160.0 1929.0 104.0 30489.0 11.0 30489.0 6465.0 274.0
MA0622.1_rc_shift6 (Mlxip_rc)				; oligos_7nt_mkv4_m46 versus MA0622.1_rc (Mlxip_rc); m=26/27; ncol2=8; w=8; offset=2; strand=R; shift=6; score=0.467273; ------mCACGTGv-- ; cor=; Ncor= a 0 0 0 0 0 0 499.0 0.0 999.0 0.0 0.0 0.0 0.0 263.0 0 0 c 0 0 0 0 0 0 250.0 999.0 0.0 999.0 0.0 0.0 0.0 421.0 0 0 g 0 0 0 0 0 0 63.0 0.0 0.0 0.0 999.0 0.0 999.0 263.0 0 0 t 0 0 0 0 0 0 188.0 0.0 0.0 0.0 0.0 999.0 0.0 53.0 0 0
MA0802.1_shift8 (TBR1)				; oligos_7nt_mkv4_m46 versus MA0802.1 (TBR1); m=27/27; ncol2=10; w=8; offset=4; strand=D; shift=8; score=0.443231; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 34509.0 6880.0 70.0 39.0 0.0 2386.0 1175.0 34509.0 c 0 0 0 0 0 0 0 0 359.0 3255.0 254.0 1759.0 6.0 4742.0 2551.0 90.0 g 0 0 0 0 0 0 0 0 3329.0 34509.0 34509.0 88.0 34509.0 157.0 34509.0 584.0 t 0 0 0 0 0 0 0 0 1433.0 4480.0 213.0 34509.0 4.0 34509.0 7001.0 205.0