Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m49/peak-motifs_oligos_7nt_mkv4_m49_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m49/peak-motifs_oligos_7nt_mkv4_m49.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m49/peak-motifs_oligos_7nt_mkv4_m49_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m49/peak-motifs_oligos_7nt_mkv4_m49.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m49/peak-motifs_oligos_7nt_mkv4_m49_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m49/peak-motifs_oligos_7nt_mkv4_m49_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m49/peak-motifs_oligos_7nt_mkv4_m49_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m49/peak-motifs_oligos_7nt_mkv4_m49_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m49/peak-motifs_oligos_7nt_mkv4_m49_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m49/peak-motifs_oligos_7nt_mkv4_m49_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_7nt_mkv4_m49/peak-motifs_oligos_7nt_mkv4_m49.tf
		file1	1	12	226
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv4_m49 MA1620.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 Ptf1a(var.3) 0.772 0.772 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m49 MA1641.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 MYF5 0.768 0.768 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m49 MA1619.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 Ptf1a(var.2) 0.765 0.765 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m49 MA0500.2 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 MYOG 0.738 0.738 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv4_m49 MA0100.3 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 MYB 0.882 0.735 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m49 MA0521.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 Tcf12 0.788 0.723 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv4_m49 MA1618.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 Ptf1a 0.762 0.704 12 13 12 13 0.9231 1.0000 0.9231 R -1
oligos_7nt_mkv4_m49 MA0698.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 ZBTB18 0.736 0.679 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_7nt_mkv4_m49 MA1123.2 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 TWIST1 0.734 0.678 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_7nt_mkv4_m49 MA0667.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 MYF6 0.796 0.663 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m49 MA0499.2 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 MYOD1 0.714 0.659 12 13 12 13 0.9231 1.0000 0.9231 R -1
oligos_7nt_mkv4_m49 MA0522.3 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 TCF3 0.716 0.656 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv4_m49 MA1621.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 Rbpjl 0.765 0.656 12 14 12 14 0.8571 1.0000 0.8571 D -1
oligos_7nt_mkv4_m49 MA1648.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 TCF12(var.2) 0.714 0.654 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv4_m49 MA1631.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 ASCL1(var.2) 0.704 0.650 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_7nt_mkv4_m49 MA0103.3 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 ZEB1 0.707 0.649 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv4_m49 MA1472.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 BHLHA15(var.2) 0.766 0.638 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_7nt_mkv4_m49 MA0816.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 Ascl2 0.756 0.630 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m49 MA1467.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 ATOH1(var.2) 0.756 0.630 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m49 MA1485.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 FERD3L 0.725 0.622 12 14 12 14 0.8571 1.0000 0.8571 R -1
oligos_7nt_mkv4_m49 MA1100.2 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 ASCL1 0.743 0.619 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m49 MA0665.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 MSC 0.736 0.613 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m49 MA0832.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 Tcf21 0.708 0.607 12 14 12 14 0.8571 1.0000 0.8571 D -1
oligos_7nt_mkv4_m49 MA0820.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 FIGLA 0.722 0.602 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m49 MA1635.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 BHLHE22(var.2) 0.718 0.599 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv4_m49 MA1558.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 SNAI1 0.716 0.597 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_7nt_mkv4_m49 MA1638.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 HAND2 0.703 0.586 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_7nt_mkv4_m49 MA0691.1 oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49 TFAP4 0.703 0.586 12 10 10 12 0.8333 0.8333 1.0000 D 1 
 Host name	pedagogix
 Job started	2020-04-13.231517
 Job done	2020-04-13.231544
 Seconds	3.73
	user	3.73
	system	0.42
	cuser	21.85
;	csystem	1.32