One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m1/peak-motifs_oligos_8nt_mkv5_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m1/peak-motifs_oligos_8nt_mkv5_m1_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m1_shift1 ; 16 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_8nt_mkv5_m1_shift1 (oligos_8nt_mkv5_m1oligos_8nt_mkv5_m1)    
; oligos_8nt_mkv5_m1 (oligos_8nt_mkv5_m1oligos_8nt_mkv5_m1); m=0 (reference); ncol1=15; shift=1; ncol=17; -CcCCCCCmCCCCCcc-
; Alignment reference
a	0	58	72	36	7	2	4	6	252	4	2	1	15	46	87	38	0
c	0	414	378	504	580	579	587	585	304	583	582	579	562	479	361	403	0
g	0	62	76	27	5	10	4	3	22	5	8	7	7	46	82	100	0
t	0	61	69	28	3	4	0	1	17	3	3	8	11	24	65	54	0
MA0753.2_shift1 (ZNF740)
; oligos_8nt_mkv5_m1 versus MA0753.2 (ZNF740); m=1/15; ncol2=13; w=13; offset=0; strand=D; shift=1; score=0.713115; -cyrCCCCCCCCAc---
; cor=; Ncor=
a	0	186.0	162.0	727.0	60.0	110.0	18.0	22.0	23.0	10.0	2.0	115.0	1055.0	207.0	0	0	0
c	0	502.0	677.0	343.0	1055.0	1055.0	1055.0	1055.0	1055.0	1055.0	1055.0	1055.0	239.0	1055.0	0	0	0
g	0	182.0	72.0	1055.0	37.0	14.0	4.0	7.0	3.0	7.0	3.0	6.0	68.0	54.0	0	0	0
t	0	185.0	378.0	312.0	49.0	1.0	16.0	15.0	11.0	6.0	3.0	4.0	134.0	246.0	0	0	0
MA1653.1_shift2 (ZNF148)
; oligos_8nt_mkv5_m1 versus MA1653.1 (ZNF148); m=2/15; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.686718; --ysCCCCTCCCcc---
; cor=; Ncor=
a	0	0	1399.0	1263.0	82.0	132.0	136.0	89.0	133.0	66.0	352.0	442.0	846.0	841.0	0	0	0
c	0	0	4593.0	4057.0	10799.0	10396.0	10526.0	10833.0	14.0	10954.0	9922.0	9283.0	7239.0	7114.0	0	0	0
g	0	0	2241.0	3215.0	205.0	471.0	401.0	211.0	1012.0	112.0	460.0	392.0	1924.0	2064.0	0	0	0
t	0	0	2966.0	2664.0	113.0	200.0	136.0	66.0	10040.0	67.0	465.0	1082.0	1190.0	1180.0	0	0	0
MA0039.4_shift2 (KLF4)
; oligos_8nt_mkv5_m1 versus MA0039.4 (KLF4); m=3/15; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.678239; --ssCCCCACCChs---
; cor=; Ncor=
a	0	0	12570.0	11487.0	2465.0	2105.0	7021.0	1173.0	45602.0	852.0	1617.0	1202.0	16264.0	9959.0	0	0	0
c	0	0	17520.0	14038.0	49209.0	47865.0	45405.0	52875.0	161.0	52366.0	51112.0	51045.0	18249.0	19217.0	0	0	0
g	0	0	14243.0	18473.0	1583.0	1214.0	1422.0	793.0	6598.0	1470.0	1870.0	1005.0	6292.0	14422.0	0	0	0
t	0	0	11484.0	11819.0	2560.0	4633.0	1969.0	976.0	3456.0	1129.0	1218.0	2565.0	15012.0	12219.0	0	0	0
MA1522.1_shift2 (MAZ)
; oligos_8nt_mkv5_m1 versus MA1522.1 (MAZ); m=4/15; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.588942; --ssCCCCTCCcc----
; cor=; Ncor=
a	0	0	2480.0	1819.0	17.0	49.0	36.0	39.0	6.0	90.0	23.0	1109.0	2016.0	0	0	0	0
c	0	0	5198.0	5068.0	14945.0	14630.0	14731.0	14676.0	0.0	14961.0	14944.0	9372.0	6775.0	0	0	0	0
g	0	0	4277.0	5163.0	75.0	384.0	290.0	347.0	130.0	8.0	96.0	1768.0	2539.0	0	0	0	0
t	0	0	3108.0	3013.0	26.0	0.0	6.0	1.0	14927.0	4.0	0.0	2814.0	3733.0	0	0	0	0
MA1564.1_shift3 (SP9)
; oligos_8nt_mkv5_m1 versus MA1564.1 (SP9); m=5/15; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.585527; ---rcCmCGCCCmcy--
; cor=; Ncor=
a	0	0	0	834.0	566.0	321.0	2451.0	2.0	211.0	22.0	0.0	39.0	1192.0	188.0	420.0	0	0
c	0	0	0	440.0	2451.0	2451.0	1127.0	2451.0	200.0	2451.0	2451.0	2451.0	1259.0	1863.0	1167.0	0	0
g	0	0	0	952.0	309.0	113.0	56.0	17.0	2451.0	0.0	0.0	24.0	38.0	191.0	204.0	0	0
t	0	0	0	226.0	518.0	284.0	96.0	9.0	173.0	14.0	30.0	412.0	353.0	588.0	660.0	0	0
MA1513.1_shift3 (KLF15)
; oligos_8nt_mkv5_m1 versus MA1513.1 (KLF15); m=6/15; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.582004; ---scCCCGCCCcs---
; cor=; Ncor=
a	0	0	0	1184.0	937.0	40.0	93.0	0.0	0.0	11.0	55.0	12.0	1566.0	1067.0	0	0	0
c	0	0	0	2903.0	6506.0	11234.0	10940.0	11368.0	0.0	11345.0	10954.0	11254.0	6267.0	5013.0	0	0	0
g	0	0	0	5538.0	2117.0	86.0	333.0	1.0	11369.0	2.0	359.0	100.0	1934.0	3124.0	0	0	0
t	0	0	0	1744.0	1809.0	9.0	3.0	0.0	0.0	11.0	1.0	3.0	1602.0	2165.0	0	0	0
MA0741.1_shift3 (KLF16)
; oligos_8nt_mkv5_m1 versus MA0741.1 (KLF16); m=7/15; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.570415; ---gmCMCgCCCMC---
; cor=; Ncor=
a	0	0	0	666.0	901.0	62.0	1150.0	66.0	497.0	8.0	2.0	16.0	437.0	32.0	0	0	0
c	0	0	0	535.0	1612.0	1612.0	461.0	1612.0	173.0	1612.0	1612.0	1612.0	1175.0	1612.0	0	0	0
g	0	0	0	1612.0	77.0	6.0	32.0	17.0	1612.0	0.0	8.0	3.0	19.0	23.0	0	0	0
t	0	0	0	240.0	116.0	45.0	0.0	19.0	403.0	0.0	0.0	97.0	40.0	370.0	0	0	0
MA0599.1_shift3 (KLF5)
; oligos_8nt_mkv5_m1 versus MA0599.1 (KLF5); m=8/15; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.561198; ---gCCMCrCCCh----
; cor=; Ncor=
a	0	0	0	1429.0	0.0	0.0	3477.0	0.0	5051.0	0.0	0.0	0.0	3915.0	0	0	0	0
c	0	0	0	2023.0	11900.0	12008.0	9569.0	13611.0	0.0	13611.0	13611.0	13135.0	5595.0	0	0	0	0
g	0	0	0	7572.0	0.0	0.0	0.0	0.0	5182.0	0.0	0.0	0.0	0.0	0	0	0	0
t	0	0	0	2587.0	1711.0	1603.0	565.0	0.0	3378.0	0.0	0.0	476.0	4101.0	0	0	0	0
MA1578.1_shift6 (VEZF1)
; oligos_8nt_mkv5_m1 versus MA1578.1 (VEZF1); m=9/15; ncol2=10; w=10; offset=5; strand=D; shift=6; score=0.543573; ------CCCCCCmytw-
; cor=; Ncor=
a	0	0	0	0	0	0	71.0	1.0	4.0	2.0	6.0	10.0	406.0	44.0	240.0	333.0	0
c	0	0	0	0	0	0	790.0	997.0	995.0	997.0	989.0	977.0	357.0	550.0	171.0	173.0	0
g	0	0	0	0	0	0	137.0	0.0	0.0	0.0	0.0	3.0	110.0	70.0	211.0	152.0	0
t	0	0	0	0	0	0	0.0	0.0	0.0	0.0	4.0	8.0	125.0	334.0	377.0	339.0	0
MA1515.1_shift2 (KLF2)
; oligos_8nt_mkv5_m1 versus MA1515.1 (KLF2); m=10/15; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.540518; --srCCmCrCCCw----
; cor=; Ncor=
a	0	0	1054.0	2510.0	741.0	403.0	4622.0	0.0	1702.0	0.0	128.0	68.0	1838.0	0	0	0	0
c	0	0	1376.0	1103.0	4622.0	4622.0	2265.0	4622.0	274.0	4622.0	4622.0	4622.0	1142.0	0	0	0	0
g	0	0	1320.0	2112.0	495.0	186.0	1060.0	0.0	2920.0	49.0	195.0	105.0	389.0	0	0	0	0
t	0	0	872.0	433.0	346.0	312.0	214.0	78.0	167.0	22.0	9.0	444.0	1253.0	0	0	0	0
MA1512.1_shift5 (KLF11)
; oligos_8nt_mkv5_m1 versus MA1512.1 (KLF11); m=11/15; ncol2=11; w=11; offset=4; strand=D; shift=5; score=0.526184; -----gcCACGCCCmC-
; cor=; Ncor=
a	0	0	0	0	0	1882.0	2022.0	650.0	8655.0	0.0	2426.0	11.0	1.0	0.0	4689.0	581.0	0
c	0	0	0	0	0	2054.0	5549.0	8662.0	1289.0	9142.0	52.0	9161.0	9166.0	8941.0	4226.0	8403.0	0
g	0	0	0	0	0	3930.0	401.0	156.0	115.0	0.0	8291.0	18.0	20.0	4.0	69.0	358.0	0
t	0	0	0	0	0	1299.0	1192.0	506.0	27.0	38.0	349.0	23.0	7.0	885.0	761.0	1281.0	0
MA1627.1_shift4 (Wt1)
; oligos_8nt_mkv5_m1 versus MA1627.1 (Wt1); m=12/15; ncol2=14; w=12; offset=3; strand=D; shift=4; score=0.524684; ----cycCTCCCCCACm
; cor=; Ncor=
a	0	0	0	0	876.0	667.0	839.0	48.0	120.0	21.0	40.0	43.0	850.0	31.0	3294.0	158.0	1675.0
c	0	0	0	0	1881.0	1630.0	2948.0	4546.0	69.0	4602.0	4354.0	4252.0	3636.0	4573.0	53.0	3749.0	1350.0
g	0	0	0	0	794.0	1161.0	404.0	58.0	319.0	42.0	75.0	120.0	101.0	46.0	990.0	436.0	928.0
t	0	0	0	0	1140.0	1233.0	500.0	39.0	4183.0	26.0	222.0	276.0	104.0	41.0	354.0	348.0	738.0
MA1511.1_shift3 (KLF10)
; oligos_8nt_mkv5_m1 versus MA1511.1 (KLF10); m=13/15; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.51793; ---gmCACrCCCmy---
; cor=; Ncor=
a	0	0	0	4746.0	6633.0	633.0	18751.0	238.0	13506.0	1.0	0.0	0.0	7545.0	934.0	0	0	0
c	0	0	0	2435.0	12654.0	19619.0	1663.0	19907.0	11.0	19995.0	19994.0	19244.0	11403.0	13118.0	0	0	0
g	0	0	0	14086.0	1299.0	98.0	1723.0	3.0	6234.0	2.0	0.0	0.0	587.0	770.0	0	0	0
t	0	0	0	1251.0	1373.0	485.0	6.0	157.0	543.0	0.0	0.0	2198.0	2686.0	6274.0	0	0	0
MA0747.1_shift5 (SP8)
; oligos_8nt_mkv5_m1 versus MA0747.1 (SP8); m=14/15; ncol2=12; w=11; offset=4; strand=D; shift=5; score=0.508485; -----rmCACgCCCmCy
; cor=; Ncor=
a	0	0	0	0	0	52.0	54.0	25.0	133.0	7.0	25.0	5.0	2.0	0.0	90.0	13.0	31.0
c	0	0	0	0	0	27.0	113.0	167.0	33.0	167.0	37.0	167.0	167.0	167.0	77.0	167.0	52.0
g	0	0	0	0	0	78.0	0.0	0.0	1.0	1.0	167.0	6.0	3.0	4.0	6.0	21.0	1.0
t	0	0	0	0	0	10.0	4.0	13.0	2.0	5.0	39.0	2.0	0.0	15.0	3.0	39.0	82.0
MA1630.1_rc_shift0 (Znf281_rc)
; oligos_8nt_mkv5_m1 versus MA1630.1_rc (Znf281_rc); m=15/15; ncol2=11; w=10; offset=-1; strand=R; shift=0; score=0.494143; CcTCCCCCAcc------
; cor=; Ncor=
a	315.0	1103.0	11.0	52.0	29.0	23.0	24.0	12.0	6298.0	745.0	954.0	0	0	0	0	0	0
c	5523.0	4312.0	8.0	6457.0	6402.0	6378.0	6356.0	6449.0	29.0	3751.0	3539.0	0	0	0	0	0	0
g	356.0	418.0	45.0	41.0	115.0	131.0	163.0	88.0	233.0	1076.0	878.0	0	0	0	0	0	0
t	374.0	735.0	6504.0	18.0	22.0	36.0	25.0	19.0	8.0	996.0	1197.0	0	0	0	0	0	0