Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m11/peak-motifs_oligos_8nt_mkv5_m11_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m11/peak-motifs_oligos_8nt_mkv5_m11.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m11/peak-motifs_oligos_8nt_mkv5_m11_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m11/peak-motifs_oligos_8nt_mkv5_m11.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m11/peak-motifs_oligos_8nt_mkv5_m11_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m11/peak-motifs_oligos_8nt_mkv5_m11_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m11/peak-motifs_oligos_8nt_mkv5_m11_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m11/peak-motifs_oligos_8nt_mkv5_m11_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m11/peak-motifs_oligos_8nt_mkv5_m11_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m11/peak-motifs_oligos_8nt_mkv5_m11_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m11/peak-motifs_oligos_8nt_mkv5_m11.tf
		file1	1	13	660
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv5_m11 MA1641.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 MYF5 0.902 0.832 13 12 12 13 0.9231 0.9231 1.0000 D 1
oligos_8nt_mkv5_m11 MA1619.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 Ptf1a(var.2) 0.898 0.829 13 12 12 13 0.9231 0.9231 1.0000 D 1
oligos_8nt_mkv5_m11 MA0832.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 Tcf21 0.863 0.801 13 14 13 14 0.9286 1.0000 0.9286 D 0
oligos_8nt_mkv5_m11 MA0500.2 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 MYOG 0.867 0.800 13 12 12 13 0.9231 0.9231 1.0000 R 1
oligos_8nt_mkv5_m11 MA0499.2 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 MYOD1 0.795 0.795 13 13 13 13 1.0000 1.0000 1.0000 R 0
oligos_8nt_mkv5_m11 MA0521.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 Tcf12 0.929 0.786 13 11 11 13 0.8462 0.8462 1.0000 D 2
oligos_8nt_mkv5_m11 MA1618.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 Ptf1a 0.766 0.766 13 13 13 13 1.0000 1.0000 1.0000 R 0
oligos_8nt_mkv5_m11 MA1485.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 FERD3L 0.823 0.765 13 14 13 14 0.9286 1.0000 0.9286 R 0
oligos_8nt_mkv5_m11 MA1593.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 ZNF317 0.809 0.747 13 12 12 13 0.9231 0.9231 1.0000 D 1
oligos_8nt_mkv5_m11 MA0745.2 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 SNAI2 0.719 0.719 13 13 13 13 1.0000 1.0000 1.0000 R 0
oligos_8nt_mkv5_m11 MA0691.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 TFAP4 0.932 0.717 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m11 MA1620.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 Ptf1a(var.3) 0.760 0.701 13 12 12 13 0.9231 0.9231 1.0000 R 1
oligos_8nt_mkv5_m11 MA1467.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 ATOH1(var.2) 0.893 0.687 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m11 MA1621.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 Rbpjl 0.737 0.685 13 14 13 14 0.9286 1.0000 0.9286 R 0
oligos_8nt_mkv5_m11 MA0665.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 MSC 0.876 0.674 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_8nt_mkv5_m11 MA1472.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 BHLHA15(var.2) 0.872 0.670 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_8nt_mkv5_m11 MA0091.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 TAL1::TCF3 0.718 0.663 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_8nt_mkv5_m11 MA0816.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 Ascl2 0.856 0.659 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m11 MA1635.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 BHLHE22(var.2) 0.848 0.653 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m11 MA0667.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 MYF6 0.832 0.640 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m11 MA0698.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 ZBTB18 0.723 0.620 13 13 12 14 0.8571 0.9231 0.9231 R 1
oligos_8nt_mkv5_m11 MA1100.2 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 ASCL1 0.801 0.617 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_8nt_mkv5_m11 MA1123.2 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 TWIST1 0.706 0.605 13 13 12 14 0.8571 0.9231 0.9231 R 1
oligos_8nt_mkv5_m11 MA0820.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 FIGLA 0.778 0.599 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_8nt_mkv5_m11 MA1655.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 ZNF341 0.760 0.597 13 12 11 14 0.7857 0.8462 0.9167 D -1
oligos_8nt_mkv5_m11 MA0048.2 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 NHLH1 0.762 0.586 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_8nt_mkv5_m11 MA0744.2 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 SCRT2 0.715 0.581 13 16 13 16 0.8125 1.0000 0.8125 D -3
oligos_8nt_mkv5_m11 MA0743.2 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 SCRT1 0.706 0.574 13 16 13 16 0.8125 1.0000 0.8125 D -3
oligos_8nt_mkv5_m11 MA1559.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 SNAI3 0.716 0.551 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m11 MA1647.1 oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11 PRDM4 0.712 0.427 13 11 9 15 0.6000 0.6923 0.8182 R -2 
 Host name	pedagogix
 Job started	2020-04-13.233354
 Job done	2020-04-13.233426
 Seconds	4.49
	user	4.5
	system	0.47
	cuser	24.28
;	csystem	1.56