Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m14/peak-motifs_oligos_8nt_mkv5_m14_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m14/peak-motifs_oligos_8nt_mkv5_m14.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m14/peak-motifs_oligos_8nt_mkv5_m14_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m14/peak-motifs_oligos_8nt_mkv5_m14.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m14/peak-motifs_oligos_8nt_mkv5_m14_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m14/peak-motifs_oligos_8nt_mkv5_m14_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m14/peak-motifs_oligos_8nt_mkv5_m14_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m14/peak-motifs_oligos_8nt_mkv5_m14_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m14/peak-motifs_oligos_8nt_mkv5_m14_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m14/peak-motifs_oligos_8nt_mkv5_m14_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m14/peak-motifs_oligos_8nt_mkv5_m14.tf
		file1	1	13	248
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv5_m14 MA1141.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 FOS::JUND 0.927 0.927 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv5_m14 MA0477.2 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 FOSL1 0.924 0.924 13 13 13 13 1.0000 1.0000 1.0000 R 0
oligos_8nt_mkv5_m14 MA1128.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 FOSL1::JUN 0.922 0.922 13 13 13 13 1.0000 1.0000 1.0000 R 0
oligos_8nt_mkv5_m14 MA0491.2 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 JUND 0.912 0.912 13 13 13 13 1.0000 1.0000 1.0000 R 0
oligos_8nt_mkv5_m14 MA1137.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 FOSL1::JUNB 0.911 0.911 13 13 13 13 1.0000 1.0000 1.0000 R 0
oligos_8nt_mkv5_m14 MA0490.2 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 JUNB 0.900 0.900 13 13 13 13 1.0000 1.0000 1.0000 R 0
oligos_8nt_mkv5_m14 MA1622.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 Smad2::Smad3 0.939 0.872 13 14 13 14 0.9286 1.0000 0.9286 R 0
oligos_8nt_mkv5_m14 MA1130.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 FOSL2::JUN 0.922 0.851 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_8nt_mkv5_m14 MA1134.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 FOS::JUNB 0.910 0.840 13 12 12 13 0.9231 0.9231 1.0000 D 1
oligos_8nt_mkv5_m14 MA0476.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 FOS 0.939 0.795 13 11 11 13 0.8462 0.8462 1.0000 R 1
oligos_8nt_mkv5_m14 MA0478.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 FOSL2 0.916 0.775 13 11 11 13 0.8462 0.8462 1.0000 R 2
oligos_8nt_mkv5_m14 MA1634.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 BATF 0.914 0.773 13 11 11 13 0.8462 0.8462 1.0000 R 1
oligos_8nt_mkv5_m14 MA0462.2 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 BATF::JUN 0.913 0.773 13 11 11 13 0.8462 0.8462 1.0000 R 1
oligos_8nt_mkv5_m14 MA0835.2 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 BATF3 0.904 0.765 13 11 11 13 0.8462 0.8462 1.0000 R 1
oligos_8nt_mkv5_m14 MA0841.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 NFE2 0.857 0.726 13 11 11 13 0.8462 0.8462 1.0000 R 1
oligos_8nt_mkv5_m14 MA0099.3 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 FOS::JUN 0.930 0.716 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m14 MA1135.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 FOSB::JUNB 0.918 0.706 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_8nt_mkv5_m14 MA1138.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 FOSL2::JUNB 0.917 0.706 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_8nt_mkv5_m14 MA1144.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 FOSL2::JUND 0.915 0.704 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_8nt_mkv5_m14 MA1142.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 FOSL1::JUND 0.901 0.693 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_8nt_mkv5_m14 MA1633.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 BACH1 0.805 0.690 13 13 12 14 0.8571 0.9231 0.9231 R -1
oligos_8nt_mkv5_m14 MA1132.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 JUN::JUNB 0.876 0.674 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_8nt_mkv5_m14 MA0496.3 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 MAFK 0.777 0.673 13 15 13 15 0.8667 1.0000 0.8667 R -2
oligos_8nt_mkv5_m14 MA0591.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 Bach1::Mafk 0.728 0.631 13 15 13 15 0.8667 1.0000 0.8667 R -1
oligos_8nt_mkv5_m14 MA0489.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 JUN(var.2) 0.912 0.627 13 14 11 16 0.6875 0.8462 0.7857 R 2
oligos_8nt_mkv5_m14 MA0655.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 JDP2 0.873 0.604 13 9 9 13 0.6923 0.6923 1.0000 R 2
oligos_8nt_mkv5_m14 MA0089.2 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 NFE2L1 0.734 0.596 13 16 13 16 0.8125 1.0000 0.8125 R -2
oligos_8nt_mkv5_m14 MA1101.2 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 BACH2 0.844 0.577 13 19 13 19 0.6842 1.0000 0.6842 R -3
oligos_8nt_mkv5_m14 MA1114.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 PBX3 0.715 0.547 13 17 13 17 0.7647 1.0000 0.7647 D 0
oligos_8nt_mkv5_m14 MA0782.2 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 PKNOX1 0.727 0.545 13 15 12 16 0.7500 0.9231 0.8000 D 1
oligos_8nt_mkv5_m14 MA0067.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 Pax2 0.803 0.494 13 8 8 13 0.6154 0.6154 1.0000 D 5
oligos_8nt_mkv5_m14 MA0501.1 oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14 MAF::NFE2 0.735 0.476 13 15 11 17 0.6471 0.8462 0.7333 R -4 
 Host name	pedagogix
 Job started	2020-04-13.233458
 Job done	2020-04-13.233541
 Seconds	6.26
	user	6.26
	system	0.83
	cuser	34.39
;	csystem	2