Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m17/peak-motifs_oligos_8nt_mkv5_m17_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m17/peak-motifs_oligos_8nt_mkv5_m17.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m17/peak-motifs_oligos_8nt_mkv5_m17_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m17/peak-motifs_oligos_8nt_mkv5_m17.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m17/peak-motifs_oligos_8nt_mkv5_m17_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m17/peak-motifs_oligos_8nt_mkv5_m17_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m17/peak-motifs_oligos_8nt_mkv5_m17_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m17/peak-motifs_oligos_8nt_mkv5_m17_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m17/peak-motifs_oligos_8nt_mkv5_m17_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m17/peak-motifs_oligos_8nt_mkv5_m17_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m17/peak-motifs_oligos_8nt_mkv5_m17.tf
		file1	1	14	364
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv5_m17 MA0744.2 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 SCRT2 0.919 0.804 14 16 14 16 0.8750 1.0000 0.8750 R 0
oligos_8nt_mkv5_m17 MA0745.2 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 SNAI2 0.860 0.799 14 13 13 14 0.9286 0.9286 1.0000 D 0
oligos_8nt_mkv5_m17 MA0499.2 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 MYOD1 0.857 0.796 14 13 13 14 0.9286 0.9286 1.0000 D 0
oligos_8nt_mkv5_m17 MA0743.2 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 SCRT1 0.907 0.793 14 16 14 16 0.8750 1.0000 0.8750 R 0
oligos_8nt_mkv5_m17 MA1620.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 Ptf1a(var.3) 0.906 0.776 14 12 12 14 0.8571 0.8571 1.0000 D 0
oligos_8nt_mkv5_m17 MA1621.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 Rbpjl 0.888 0.770 14 14 13 15 0.8667 0.9286 0.9286 D -1
oligos_8nt_mkv5_m17 MA0832.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 Tcf21 0.845 0.732 14 14 13 15 0.8667 0.9286 0.9286 R -1
oligos_8nt_mkv5_m17 MA0830.2 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 TCF4 0.761 0.706 14 13 13 14 0.9286 0.9286 1.0000 D 0
oligos_8nt_mkv5_m17 MA1641.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 MYF5 0.818 0.701 14 12 12 14 0.8571 0.8571 1.0000 R 0
oligos_8nt_mkv5_m17 MA1631.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 ASCL1(var.2) 0.750 0.696 14 13 13 14 0.9286 0.9286 1.0000 D 0
oligos_8nt_mkv5_m17 MA1619.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 Ptf1a(var.2) 0.811 0.695 14 12 12 14 0.8571 0.8571 1.0000 D 0
oligos_8nt_mkv5_m17 MA1485.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 FERD3L 0.776 0.672 14 14 13 15 0.8667 0.9286 0.9286 R -1
oligos_8nt_mkv5_m17 MA1105.2 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 GRHL2 0.780 0.668 14 12 12 14 0.8571 0.8571 1.0000 R 1
oligos_8nt_mkv5_m17 MA0521.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 Tcf12 0.846 0.665 14 11 11 14 0.7857 0.7857 1.0000 R 0
oligos_8nt_mkv5_m17 MA1642.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 NEUROG2(var.2) 0.708 0.658 14 13 13 14 0.9286 0.9286 1.0000 R 0
oligos_8nt_mkv5_m17 MA1618.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 Ptf1a 0.705 0.654 14 13 13 14 0.9286 0.9286 1.0000 D 0
oligos_8nt_mkv5_m17 MA0500.2 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 MYOG 0.760 0.651 14 12 12 14 0.8571 0.8571 1.0000 D 0
oligos_8nt_mkv5_m17 MA0820.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 FIGLA 0.908 0.648 14 10 10 14 0.7143 0.7143 1.0000 D 1
oligos_8nt_mkv5_m17 MA1559.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 SNAI3 0.889 0.635 14 10 10 14 0.7143 0.7143 1.0000 R 1
oligos_8nt_mkv5_m17 MA0665.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 MSC 0.887 0.634 14 10 10 14 0.7143 0.7143 1.0000 D 1
oligos_8nt_mkv5_m17 MA0103.3 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 ZEB1 0.797 0.626 14 11 11 14 0.7857 0.7857 1.0000 D 1
oligos_8nt_mkv5_m17 MA0667.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 MYF6 0.862 0.616 14 10 10 14 0.7143 0.7143 1.0000 D 1
oligos_8nt_mkv5_m17 MA1467.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 ATOH1(var.2) 0.859 0.614 14 10 10 14 0.7143 0.7143 1.0000 R 1
oligos_8nt_mkv5_m17 MA1558.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 SNAI1 0.842 0.601 14 10 10 14 0.7143 0.7143 1.0000 R 1
oligos_8nt_mkv5_m17 MA1648.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 TCF12(var.2) 0.755 0.593 14 11 11 14 0.7857 0.7857 1.0000 D 1
oligos_8nt_mkv5_m17 MA1472.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 BHLHA15(var.2) 0.828 0.592 14 10 10 14 0.7143 0.7143 1.0000 R 1
oligos_8nt_mkv5_m17 MA0691.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 TFAP4 0.820 0.585 14 10 10 14 0.7143 0.7143 1.0000 R 1
oligos_8nt_mkv5_m17 MA0522.3 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 TCF3 0.744 0.585 14 11 11 14 0.7857 0.7857 1.0000 D 1
oligos_8nt_mkv5_m17 MA1109.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 NEUROD1 0.710 0.568 14 13 12 15 0.8000 0.8571 0.9231 R -1
oligos_8nt_mkv5_m17 MA0091.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 TAL1::TCF3 0.769 0.564 14 12 11 15 0.7333 0.7857 0.9167 D -1
oligos_8nt_mkv5_m17 MA0816.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 Ascl2 0.783 0.559 14 10 10 14 0.7143 0.7143 1.0000 R 1
oligos_8nt_mkv5_m17 MA0819.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 CLOCK 0.775 0.554 14 10 10 14 0.7143 0.7143 1.0000 R 1
oligos_8nt_mkv5_m17 MA1570.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 TFAP4(var.2) 0.766 0.547 14 10 10 14 0.7143 0.7143 1.0000 R 1
oligos_8nt_mkv5_m17 MA1100.2 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 ASCL1 0.764 0.546 14 10 10 14 0.7143 0.7143 1.0000 R 1
oligos_8nt_mkv5_m17 MA1635.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 BHLHE22(var.2) 0.731 0.522 14 10 10 14 0.7143 0.7143 1.0000 R 1
oligos_8nt_mkv5_m17 MA1638.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 HAND2 0.718 0.513 14 10 10 14 0.7143 0.7143 1.0000 R 1
oligos_8nt_mkv5_m17 MA0807.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 TBX5 0.889 0.508 14 8 8 14 0.5714 0.5714 1.0000 R 0
oligos_8nt_mkv5_m17 MA0806.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 TBX4 0.876 0.501 14 8 8 14 0.5714 0.5714 1.0000 R 0
oligos_8nt_mkv5_m17 MA0803.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 TBX15 0.853 0.488 14 8 8 14 0.5714 0.5714 1.0000 R 0
oligos_8nt_mkv5_m17 MA0805.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 TBX1 0.832 0.475 14 8 8 14 0.5714 0.5714 1.0000 R 0
oligos_8nt_mkv5_m17 MA0801.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 MGA 0.813 0.465 14 8 8 14 0.5714 0.5714 1.0000 R 0
oligos_8nt_mkv5_m17 MA1567.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 TBX6 0.752 0.451 14 10 9 15 0.6000 0.6429 0.9000 R -1
oligos_8nt_mkv5_m17 MA1566.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 TBX3 0.738 0.443 14 10 9 15 0.6000 0.6429 0.9000 R -1
oligos_8nt_mkv5_m17 MA0690.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 TBX21 0.700 0.420 14 10 9 15 0.6000 0.6429 0.9000 R -1
oligos_8nt_mkv5_m17 MA0802.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 TBR1 0.835 0.417 14 10 8 16 0.5000 0.5714 0.8000 R -2
oligos_8nt_mkv5_m17 MA0688.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 TBX2 0.730 0.411 14 11 9 16 0.5625 0.6429 0.8182 R -2
oligos_8nt_mkv5_m17 MA0622.1 oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17 Mlxip 0.712 0.407 14 8 8 14 0.5714 0.5714 1.0000 D 2 
 Host name	pedagogix
 Job started	2020-04-13.233549
 Job done	2020-04-13.233641
 Seconds	7.29
	user	7.29
	system	0.77
	cuser	42.21
;	csystem	2.29