One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m19/peak-motifs_oligos_8nt_mkv5_m19.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m19/peak-motifs_oligos_8nt_mkv5_m19_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m19_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m19_shift0 (oligos_8nt_mkv5_m19oligos_8nt_mkv5_m19)
; oligos_8nt_mkv5_m19 (oligos_8nt_mkv5_m19oligos_8nt_mkv5_m19); m=0 (reference); ncol1=12; shift=0; ncol=12; bsTGCCCACAsm ; Alignment reference a 20 30 0 7 2 1 1 171 0 166 30 44 c 54 71 12 6 166 169 170 0 169 2 50 45 g 50 47 2 152 3 2 0 1 1 4 56 42 t 48 24 158 7 1 0 1 0 2 0 36 41

MA1601.1_rc_shift1 (ZNF75D_rc)
; oligos_8nt_mkv5_m19 versus MA1601.1_rc (ZNF75D_rc); m=1/4; ncol2=10; w=10; offset=1; strand=R; shift=1; score=0.621204; -TyTCCCACay- ; cor=; Ncor= a 0 512.0 396.0 18.0 28.0 124.0 5.0 6686.0 0.0 3519.0 1225.0 0 c 0 746.0 1693.0 15.0 6678.0 6545.0 6710.0 4.0 6757.0 1468.0 1850.0 0 g 0 256.0 576.0 20.0 29.0 44.0 18.0 59.0 0.0 715.0 1573.0 0 t 0 5245.0 4094.0 6706.0 24.0 46.0 26.0 10.0 2.0 1057.0 2111.0 0

MA0597.1_shift1 (THAP1)
; oligos_8nt_mkv5_m19 versus MA0597.1 (THAP1); m=2/4; ncol2=9; w=9; offset=1; strand=D; shift=1; score=0.608832; -ytGCCMkya-- ; cor=; Ncor= a 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 0 0 c 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 0 0 g 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 0 0 t 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0 0 0

MA0738.1_shift1 (HIC2)
; oligos_8nt_mkv5_m19 versus MA0738.1 (HIC2); m=3/4; ncol2=9; w=9; offset=1; strand=D; shift=1; score=0.595401; -rTGCCMrsy-- ; cor=; Ncor= a 0 2606.0 0.0 494.0 23.0 435.0 1466.0 2493.0 770.0 760.0 0 0 c 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 710.0 2200.0 1732.0 0 0 g 0 2285.0 0.0 4891.0 14.0 0.0 0.0 1290.0 1237.0 1001.0 0 0 t 0 367.0 4891.0 151.0 0.0 59.0 0.0 399.0 684.0 1398.0 0 0

MA0739.1_shift1 (Hic1)
; oligos_8nt_mkv5_m19 versus MA0739.1 (Hic1); m=4/4; ncol2=9; w=9; offset=1; strand=D; shift=1; score=0.526076; -rTGCCAaCc-- ; cor=; Ncor= a 0 6337.0 62.0 950.0 50.0 88.0 9008.0 6140.0 1220.0 1610.0 0 0 c 0 719.0 422.0 588.0 11007.0 11007.0 1999.0 1986.0 11007.0 4822.0 0 0 g 0 4670.0 73.0 11007.0 121.0 31.0 3.0 2267.0 1629.0 1884.0 0 0 t 0 666.0 11007.0 183.0 0.0 68.0 317.0 614.0 1488.0 2692.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv5_m19_shift0 (oligos_8nt_mkv5_m19oligos_8nt_mkv5_m19)				; oligos_8nt_mkv5_m19 (oligos_8nt_mkv5_m19oligos_8nt_mkv5_m19); m=0 (reference); ncol1=12; shift=0; ncol=12; bsTGCCCACAsm ; Alignment reference a 20 30 0 7 2 1 1 171 0 166 30 44 c 54 71 12 6 166 169 170 0 169 2 50 45 g 50 47 2 152 3 2 0 1 1 4 56 42 t 48 24 158 7 1 0 1 0 2 0 36 41
MA1601.1_rc_shift1 (ZNF75D_rc)				; oligos_8nt_mkv5_m19 versus MA1601.1_rc (ZNF75D_rc); m=1/4; ncol2=10; w=10; offset=1; strand=R; shift=1; score=0.621204; -TyTCCCACay- ; cor=; Ncor= a 0 512.0 396.0 18.0 28.0 124.0 5.0 6686.0 0.0 3519.0 1225.0 0 c 0 746.0 1693.0 15.0 6678.0 6545.0 6710.0 4.0 6757.0 1468.0 1850.0 0 g 0 256.0 576.0 20.0 29.0 44.0 18.0 59.0 0.0 715.0 1573.0 0 t 0 5245.0 4094.0 6706.0 24.0 46.0 26.0 10.0 2.0 1057.0 2111.0 0
MA0597.1_shift1 (THAP1)				; oligos_8nt_mkv5_m19 versus MA0597.1 (THAP1); m=2/4; ncol2=9; w=9; offset=1; strand=D; shift=1; score=0.608832; -ytGCCMkya-- ; cor=; Ncor= a 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 0 0 c 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 0 0 g 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 0 0 t 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0 0 0
MA0738.1_shift1 (HIC2)				; oligos_8nt_mkv5_m19 versus MA0738.1 (HIC2); m=3/4; ncol2=9; w=9; offset=1; strand=D; shift=1; score=0.595401; -rTGCCMrsy-- ; cor=; Ncor= a 0 2606.0 0.0 494.0 23.0 435.0 1466.0 2493.0 770.0 760.0 0 0 c 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 710.0 2200.0 1732.0 0 0 g 0 2285.0 0.0 4891.0 14.0 0.0 0.0 1290.0 1237.0 1001.0 0 0 t 0 367.0 4891.0 151.0 0.0 59.0 0.0 399.0 684.0 1398.0 0 0
MA0739.1_shift1 (Hic1)				; oligos_8nt_mkv5_m19 versus MA0739.1 (Hic1); m=4/4; ncol2=9; w=9; offset=1; strand=D; shift=1; score=0.526076; -rTGCCAaCc-- ; cor=; Ncor= a 0 6337.0 62.0 950.0 50.0 88.0 9008.0 6140.0 1220.0 1610.0 0 0 c 0 719.0 422.0 588.0 11007.0 11007.0 1999.0 1986.0 11007.0 4822.0 0 0 g 0 4670.0 73.0 11007.0 121.0 31.0 3.0 2267.0 1629.0 1884.0 0 0 t 0 666.0 11007.0 183.0 0.0 68.0 317.0 614.0 1488.0 2692.0 0 0