Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m2/peak-motifs_oligos_8nt_mkv5_m2_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m2/peak-motifs_oligos_8nt_mkv5_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m2/peak-motifs_oligos_8nt_mkv5_m2_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m2/peak-motifs_oligos_8nt_mkv5_m2.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m2/peak-motifs_oligos_8nt_mkv5_m2_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m2/peak-motifs_oligos_8nt_mkv5_m2_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m2/peak-motifs_oligos_8nt_mkv5_m2_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m2/peak-motifs_oligos_8nt_mkv5_m2_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m2/peak-motifs_oligos_8nt_mkv5_m2_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m2/peak-motifs_oligos_8nt_mkv5_m2_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m2/peak-motifs_oligos_8nt_mkv5_m2.tf
		file1	1	15	311
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv5_m2 MA0744.2 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 SCRT2 0.809 0.758 15 16 15 16 0.9375 1.0000 0.9375 D -1
oligos_8nt_mkv5_m2 MA0743.2 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 SCRT1 0.797 0.747 15 16 15 16 0.9375 1.0000 0.9375 D -1
oligos_8nt_mkv5_m2 MA0499.2 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 MYOD1 0.844 0.732 15 13 13 15 0.8667 0.8667 1.0000 R 2
oligos_8nt_mkv5_m2 MA1620.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 Ptf1a(var.3) 0.898 0.719 15 12 12 15 0.8000 0.8000 1.0000 R 3
oligos_8nt_mkv5_m2 MA0745.2 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 SNAI2 0.827 0.717 15 13 13 15 0.8667 0.8667 1.0000 R 2
oligos_8nt_mkv5_m2 MA1621.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 Rbpjl 0.879 0.714 15 14 13 16 0.8125 0.8667 0.9286 R 2
oligos_8nt_mkv5_m2 MA0832.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 Tcf21 0.819 0.666 15 14 13 16 0.8125 0.8667 0.9286 D 2
oligos_8nt_mkv5_m2 MA1641.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 MYF5 0.826 0.661 15 12 12 15 0.8000 0.8000 1.0000 D 3
oligos_8nt_mkv5_m2 MA1619.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 Ptf1a(var.2) 0.815 0.652 15 12 12 15 0.8000 0.8000 1.0000 R 3
oligos_8nt_mkv5_m2 MA0830.2 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 TCF4 0.729 0.632 15 13 13 15 0.8667 0.8667 1.0000 R 2
oligos_8nt_mkv5_m2 MA1631.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 ASCL1(var.2) 0.722 0.625 15 13 13 15 0.8667 0.8667 1.0000 R 2
oligos_8nt_mkv5_m2 MA0521.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 Tcf12 0.846 0.621 15 11 11 15 0.7333 0.7333 1.0000 D 4
oligos_8nt_mkv5_m2 MA1618.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 Ptf1a 0.708 0.613 15 13 13 15 0.8667 0.8667 1.0000 R 2
oligos_8nt_mkv5_m2 MA1105.2 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 GRHL2 0.761 0.609 15 12 12 15 0.8000 0.8000 1.0000 D 2
oligos_8nt_mkv5_m2 MA1485.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 FERD3L 0.742 0.603 15 14 13 16 0.8125 0.8667 0.9286 R 2
oligos_8nt_mkv5_m2 MA0665.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 MSC 0.900 0.600 15 10 10 15 0.6667 0.6667 1.0000 R 4
oligos_8nt_mkv5_m2 MA0500.2 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 MYOG 0.749 0.599 15 12 12 15 0.8000 0.8000 1.0000 R 3
oligos_8nt_mkv5_m2 MA0820.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 FIGLA 0.897 0.598 15 10 10 15 0.6667 0.6667 1.0000 R 4
oligos_8nt_mkv5_m2 MA0667.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 MYF6 0.881 0.587 15 10 10 15 0.6667 0.6667 1.0000 R 4
oligos_8nt_mkv5_m2 MA1467.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 ATOH1(var.2) 0.875 0.583 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m2 MA1559.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 SNAI3 0.872 0.581 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m2 MA0091.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 TAL1::TCF3 0.713 0.570 15 12 12 15 0.8000 0.8000 1.0000 D 2
oligos_8nt_mkv5_m2 MA0103.3 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 ZEB1 0.774 0.568 15 11 11 15 0.7333 0.7333 1.0000 R 3
oligos_8nt_mkv5_m2 MA1655.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 ZNF341 0.703 0.563 15 12 12 15 0.8000 0.8000 1.0000 D 1
oligos_8nt_mkv5_m2 MA1472.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 BHLHA15(var.2) 0.838 0.559 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m2 MA0691.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 TFAP4 0.830 0.554 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m2 MA1558.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 SNAI1 0.826 0.550 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m2 MA1648.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 TCF12(var.2) 0.720 0.528 15 11 11 15 0.7333 0.7333 1.0000 R 3
oligos_8nt_mkv5_m2 MA1109.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 NEUROD1 0.701 0.526 15 13 12 16 0.7500 0.8000 0.9231 D 3
oligos_8nt_mkv5_m2 MA0816.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 Ascl2 0.788 0.525 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m2 MA0522.3 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 TCF3 0.716 0.525 15 11 11 15 0.7333 0.7333 1.0000 R 3
oligos_8nt_mkv5_m2 MA0819.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 CLOCK 0.772 0.515 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m2 MA1570.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 TFAP4(var.2) 0.769 0.513 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m2 MA1100.2 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 ASCL1 0.764 0.509 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m2 MA1635.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 BHLHE22(var.2) 0.736 0.490 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m2 MA1638.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 HAND2 0.715 0.477 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m2 MA0807.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 TBX5 0.889 0.474 15 8 8 15 0.5333 0.5333 1.0000 D 7
oligos_8nt_mkv5_m2 MA0806.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 TBX4 0.879 0.469 15 8 8 15 0.5333 0.5333 1.0000 D 7
oligos_8nt_mkv5_m2 MA0803.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 TBX15 0.862 0.460 15 8 8 15 0.5333 0.5333 1.0000 D 7
oligos_8nt_mkv5_m2 MA0805.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 TBX1 0.842 0.449 15 8 8 15 0.5333 0.5333 1.0000 D 7
oligos_8nt_mkv5_m2 MA0801.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 MGA 0.821 0.438 15 8 8 15 0.5333 0.5333 1.0000 D 7
oligos_8nt_mkv5_m2 MA1567.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 TBX6 0.753 0.424 15 10 9 16 0.5625 0.6000 0.9000 D 6
oligos_8nt_mkv5_m2 MA1566.1 oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2 TBX3 0.740 0.416 15 10 9 16 0.5625 0.6000 0.9000 D 6 
 Host name	pedagogix
 Job started	2020-04-13.232948
 Job done	2020-04-13.233036
 Seconds	6.7
	user	6.7
	system	0.82
	cuser	38.71
;	csystem	2.35