One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m20/peak-motifs_oligos_8nt_mkv5_m20.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m20/peak-motifs_oligos_8nt_mkv5_m20_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m20_shift1 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m20_shift1 (oligos_8nt_mkv5_m20oligos_8nt_mkv5_m20)
; oligos_8nt_mkv5_m20 (oligos_8nt_mkv5_m20oligos_8nt_mkv5_m20); m=0 (reference); ncol1=12; shift=1; ncol=17; -msCCACAGCCvs---- ; Alignment reference a 0 70 45 1 0 207 2 185 0 4 0 59 35 0 0 0 0 c 0 66 59 220 214 2 220 23 2 217 220 56 80 0 0 0 0 g 0 53 91 2 6 13 0 14 216 0 2 70 70 0 0 0 0 t 0 34 28 0 3 1 1 1 5 2 1 38 38 0 0 0 0

MA0493.1_shift1 (Klf1)
; oligos_8nt_mkv5_m20 versus MA0493.1 (Klf1); m=1/6; ncol2=11; w=11; offset=0; strand=D; shift=1; score=0.694362; -rrCCACACCCw----- ; cor=; Ncor= a 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 0 0 c 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 0 0 g 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0 0 0

MA1511.1_shift2 (KLF10)
; oligos_8nt_mkv5_m20 versus MA1511.1 (KLF10); m=2/6; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.675201; --gmCACrCCCmy---- ; cor=; Ncor= a 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 0 0 c 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 0 0 g 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 0 0 t 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0 0 0

MA0002.2_rc_shift0 (RUNX1_rc)
; oligos_8nt_mkv5_m20 versus MA0002.2_rc (RUNX1_rc); m=3/6; ncol2=11; w=10; offset=-1; strand=R; shift=0; score=0.596518; waaCCACAram------ ; cor=; Ncor= a 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 0 0 0 0 0 c 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 0 0 0 0 0 g 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 0 0 0 0 0 t 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0 0 0 0 0 0

MA1107.2_shift0 (KLF9)
; oligos_8nt_mkv5_m20 versus MA1107.2 (KLF9); m=4/6; ncol2=16; w=12; offset=-1; strand=D; shift=0; score=0.564367; crgCCACACCCAChyc- ; cor=; Ncor= a 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 5875.0 0 c 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 9519.0 0 g 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 5681.0 0 t 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0 4504.0 0

MA1596.1_shift2 (ZNF460)
; oligos_8nt_mkv5_m20 versus MA1596.1 (ZNF460); m=5/6; ncol2=16; w=11; offset=1; strand=D; shift=2; score=0.464492; --rCCTCmGCCTCCCrr ; cor=; Ncor= a 0 0 412.0 49.0 19.0 27.0 17.0 851.0 61.0 6.0 1.0 13.0 3.0 5.0 12.0 516.0 987.0 c 0 0 131.0 1264.0 1460.0 218.0 1519.0 495.0 23.0 1588.0 1596.0 12.0 1584.0 1583.0 1533.0 110.0 175.0 g 0 0 1023.0 185.0 67.0 83.0 47.0 181.0 1493.0 7.0 9.0 17.0 15.0 15.0 27.0 930.0 421.0 t 0 0 46.0 114.0 66.0 1284.0 29.0 85.0 35.0 11.0 6.0 1570.0 10.0 9.0 40.0 56.0 29.0

MA0130.1_shift1 (ZNF354C)
; oligos_8nt_mkv5_m20 versus MA0130.1 (ZNF354C); m=6/6; ncol2=6; w=6; offset=0; strand=D; shift=1; score=0.454683; -mTCCAC---------- ; cor=; Ncor= a 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 0 0 0 c 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 0 0 0 g 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 0 0 0 t 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv5_m20_shift1 (oligos_8nt_mkv5_m20oligos_8nt_mkv5_m20)				; oligos_8nt_mkv5_m20 (oligos_8nt_mkv5_m20oligos_8nt_mkv5_m20); m=0 (reference); ncol1=12; shift=1; ncol=17; -msCCACAGCCvs---- ; Alignment reference a 0 70 45 1 0 207 2 185 0 4 0 59 35 0 0 0 0 c 0 66 59 220 214 2 220 23 2 217 220 56 80 0 0 0 0 g 0 53 91 2 6 13 0 14 216 0 2 70 70 0 0 0 0 t 0 34 28 0 3 1 1 1 5 2 1 38 38 0 0 0 0
MA0493.1_shift1 (Klf1)				; oligos_8nt_mkv5_m20 versus MA0493.1 (Klf1); m=1/6; ncol2=11; w=11; offset=0; strand=D; shift=1; score=0.694362; -rrCCACACCCw----- ; cor=; Ncor= a 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 0 0 c 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 0 0 g 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0 0 0
MA1511.1_shift2 (KLF10)				; oligos_8nt_mkv5_m20 versus MA1511.1 (KLF10); m=2/6; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.675201; --gmCACrCCCmy---- ; cor=; Ncor= a 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 0 0 c 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 0 0 g 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 0 0 t 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0 0 0
MA0002.2_rc_shift0 (RUNX1_rc)				; oligos_8nt_mkv5_m20 versus MA0002.2_rc (RUNX1_rc); m=3/6; ncol2=11; w=10; offset=-1; strand=R; shift=0; score=0.596518; waaCCACAram------ ; cor=; Ncor= a 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 0 0 0 0 0 c 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 0 0 0 0 0 g 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 0 0 0 0 0 t 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0 0 0 0 0 0
MA1107.2_shift0 (KLF9)				; oligos_8nt_mkv5_m20 versus MA1107.2 (KLF9); m=4/6; ncol2=16; w=12; offset=-1; strand=D; shift=0; score=0.564367; crgCCACACCCAChyc- ; cor=; Ncor= a 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 5875.0 0 c 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 9519.0 0 g 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 5681.0 0 t 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0 4504.0 0
MA1596.1_shift2 (ZNF460)				; oligos_8nt_mkv5_m20 versus MA1596.1 (ZNF460); m=5/6; ncol2=16; w=11; offset=1; strand=D; shift=2; score=0.464492; --rCCTCmGCCTCCCrr ; cor=; Ncor= a 0 0 412.0 49.0 19.0 27.0 17.0 851.0 61.0 6.0 1.0 13.0 3.0 5.0 12.0 516.0 987.0 c 0 0 131.0 1264.0 1460.0 218.0 1519.0 495.0 23.0 1588.0 1596.0 12.0 1584.0 1583.0 1533.0 110.0 175.0 g 0 0 1023.0 185.0 67.0 83.0 47.0 181.0 1493.0 7.0 9.0 17.0 15.0 15.0 27.0 930.0 421.0 t 0 0 46.0 114.0 66.0 1284.0 29.0 85.0 35.0 11.0 6.0 1570.0 10.0 9.0 40.0 56.0 29.0
MA0130.1_shift1 (ZNF354C)				; oligos_8nt_mkv5_m20 versus MA0130.1 (ZNF354C); m=6/6; ncol2=6; w=6; offset=0; strand=D; shift=1; score=0.454683; -mTCCAC---------- ; cor=; Ncor= a 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 0 0 0 c 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 0 0 0 g 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 0 0 0 t 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0 0 0 0