One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m21/peak-motifs_oligos_8nt_mkv5_m21.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m21/peak-motifs_oligos_8nt_mkv5_m21_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m21_shift2 ; 22 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_8nt_mkv5_m21_shift2 (oligos_8nt_mkv5_m21oligos_8nt_mkv5_m21)     
; oligos_8nt_mkv5_m21 (oligos_8nt_mkv5_m21oligos_8nt_mkv5_m21); m=0 (reference); ncol1=12; shift=2; ncol=18; --vsCCACACCCcs----
; Alignment reference
a	0	0	56	41	3	2	181	4	188	0	0	0	43	48	0	0	0	0
c	0	0	58	51	192	193	14	191	3	198	199	198	63	60	0	0	0	0
g	0	0	55	65	1	8	8	3	12	1	5	6	48	59	0	0	0	0
t	0	0	35	47	8	1	1	6	1	5	0	0	50	37	0	0	0	0
MA0039.4_shift2 (KLF4) 
; oligos_8nt_mkv5_m21 versus MA0039.4 (KLF4); m=1/21; ncol2=12; w=12; offset=0; strand=D; shift=2; score= 0.8753; --ssCCCCACCChs----
; cor=; Ncor=
a	0	0	12570.0	11487.0	2465.0	2105.0	7021.0	1173.0	45602.0	852.0	1617.0	1202.0	16264.0	9959.0	0	0	0	0
c	0	0	17520.0	14038.0	49209.0	47865.0	45405.0	52875.0	161.0	52366.0	51112.0	51045.0	18249.0	19217.0	0	0	0	0
g	0	0	14243.0	18473.0	1583.0	1214.0	1422.0	793.0	6598.0	1470.0	1870.0	1005.0	6292.0	14422.0	0	0	0	0
t	0	0	11484.0	11819.0	2560.0	4633.0	1969.0	976.0	3456.0	1129.0	1218.0	2565.0	15012.0	12219.0	0	0	0	0
MA0493.1_shift2 (Klf1) 
; oligos_8nt_mkv5_m21 versus MA0493.1 (Klf1); m=2/21; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.863515; --rrCCACACCCw-----
; cor=; Ncor=
a	0	0	150.0	167.0	67.0	13.0	404.0	0.0	400.0	0.0	0.0	0.0	280.0	0	0	0	0	0
c	0	0	76.0	40.0	396.0	461.0	118.0	526.0	0.0	526.0	526.0	508.0	35.0	0	0	0	0	0
g	0	0	202.0	305.0	32.0	0.0	0.0	0.0	97.0	0.0	0.0	0.0	0.0	0	0	0	0	0
t	0	0	98.0	14.0	31.0	52.0	4.0	0.0	29.0	0.0	0.0	18.0	211.0	0	0	0	0	0
MA1511.1_shift3 (KLF10) 
; oligos_8nt_mkv5_m21 versus MA1511.1 (KLF10); m=3/21; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.839044; ---gmCACrCCCmy----
; cor=; Ncor=
a	0	0	0	4746.0	6633.0	633.0	18751.0	238.0	13506.0	1.0	0.0	0.0	7545.0	934.0	0	0	0	0
c	0	0	0	2435.0	12654.0	19619.0	1663.0	19907.0	11.0	19995.0	19994.0	19244.0	11403.0	13118.0	0	0	0	0
g	0	0	0	14086.0	1299.0	98.0	1723.0	3.0	6234.0	2.0	0.0	0.0	587.0	770.0	0	0	0	0
t	0	0	0	1251.0	1373.0	485.0	6.0	157.0	543.0	0.0	0.0	2198.0	2686.0	6274.0	0	0	0	0
MA1515.1_shift2 (KLF2) 
; oligos_8nt_mkv5_m21 versus MA1515.1 (KLF2); m=4/21; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.823421; --srCCmCrCCCw-----
; cor=; Ncor=
a	0	0	1054.0	2510.0	741.0	403.0	4622.0	0.0	1702.0	0.0	128.0	68.0	1838.0	0	0	0	0	0
c	0	0	1376.0	1103.0	4622.0	4622.0	2265.0	4622.0	274.0	4622.0	4622.0	4622.0	1142.0	0	0	0	0	0
g	0	0	1320.0	2112.0	495.0	186.0	1060.0	0.0	2920.0	49.0	195.0	105.0	389.0	0	0	0	0	0
t	0	0	872.0	433.0	346.0	312.0	214.0	78.0	167.0	22.0	9.0	444.0	1253.0	0	0	0	0	0
MA1517.1_shift2 (KLF6) 
; oligos_8nt_mkv5_m21 versus MA1517.1 (KLF6); m=5/21; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.810447; --srcCACRCCCm-----
; cor=; Ncor=
a	0	0	443.0	1035.0	569.0	432.0	2192.0	0.0	1024.0	0.0	25.0	71.0	955.0	0	0	0	0	0
c	0	0	624.0	490.0	2192.0	2192.0	284.0	2192.0	0.0	2192.0	2192.0	2192.0	665.0	0	0	0	0	0
g	0	0	626.0	1157.0	332.0	298.0	60.0	0.0	2192.0	0.0	60.0	12.0	52.0	0	0	0	0	0
t	0	0	499.0	136.0	219.0	140.0	60.0	24.0	0.0	0.0	0.0	64.0	520.0	0	0	0	0	0
MA1512.1_shift3 (KLF11) 
; oligos_8nt_mkv5_m21 versus MA1512.1 (KLF11); m=6/21; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.762644; ---gcCACGCCCmC----
; cor=; Ncor=
a	0	0	0	1882.0	2022.0	650.0	8655.0	0.0	2426.0	11.0	1.0	0.0	4689.0	581.0	0	0	0	0
c	0	0	0	2054.0	5549.0	8662.0	1289.0	9142.0	52.0	9161.0	9166.0	8941.0	4226.0	8403.0	0	0	0	0
g	0	0	0	3930.0	401.0	156.0	115.0	0.0	8291.0	18.0	20.0	4.0	69.0	358.0	0	0	0	0
t	0	0	0	1299.0	1192.0	506.0	27.0	38.0	349.0	23.0	7.0	885.0	761.0	1281.0	0	0	0	0
MA0746.2_shift2 (SP3) 
; oligos_8nt_mkv5_m21 versus MA0746.2 (SP3); m=7/21; ncol2=13; w=12; offset=0; strand=D; shift=2; score=0.747127; --srCCACGCCCmCy---
; cor=; Ncor=
a	0	0	1267.0	2146.0	664.0	160.0	5253.0	6.0	465.0	0.0	0.0	2.0	3430.0	556.0	1516.0	0	0	0
c	0	0	1884.0	531.0	6591.0	6591.0	1338.0	6591.0	0.0	6591.0	6591.0	6591.0	3160.0	5116.0	2608.0	0	0	0
g	0	0	1895.0	4445.0	226.0	54.0	2.0	0.0	6591.0	0.0	0.0	2.0	39.0	297.0	524.0	0	0	0
t	0	0	1545.0	421.0	345.0	202.0	11.0	12.0	504.0	0.0	9.0	718.0	552.0	1475.0	1943.0	0	0	0
MA0741.1_shift3 (KLF16) 
; oligos_8nt_mkv5_m21 versus MA0741.1 (KLF16); m=8/21; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.746414; ---gmCMCgCCCMC----
; cor=; Ncor=
a	0	0	0	666.0	901.0	62.0	1150.0	66.0	497.0	8.0	2.0	16.0	437.0	32.0	0	0	0	0
c	0	0	0	535.0	1612.0	1612.0	461.0	1612.0	173.0	1612.0	1612.0	1612.0	1175.0	1612.0	0	0	0	0
g	0	0	0	1612.0	77.0	6.0	32.0	17.0	1612.0	0.0	8.0	3.0	19.0	23.0	0	0	0	0
t	0	0	0	240.0	116.0	45.0	0.0	19.0	403.0	0.0	0.0	97.0	40.0	370.0	0	0	0	0
MA1516.1_shift2 (KLF3) 
; oligos_8nt_mkv5_m21 versus MA1516.1 (KLF3); m=9/21; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.73462; --grCCrCGCCCw-----
; cor=; Ncor=
a	0	0	7717.0	24771.0	1442.0	298.0	26757.0	2261.0	4245.0	202.0	83.0	77.0	17029.0	0	0	0	0	0
c	0	0	2655.0	615.0	43259.0	43259.0	707.0	43259.0	334.0	43259.0	43259.0	43259.0	10099.0	0	0	0	0	0
g	0	0	26568.0	18489.0	1954.0	248.0	16503.0	21.0	43259.0	31.0	29.0	48.0	1514.0	0	0	0	0	0
t	0	0	6319.0	207.0	705.0	335.0	419.0	1409.0	1212.0	0.0	0.0	1218.0	14617.0	0	0	0	0	0
MA0599.1_shift3 (KLF5) 
; oligos_8nt_mkv5_m21 versus MA0599.1 (KLF5); m=10/21; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.709757; ---gCCMCrCCCh-----
; cor=; Ncor=
a	0	0	0	1429.0	0.0	0.0	3477.0	0.0	5051.0	0.0	0.0	0.0	3915.0	0	0	0	0	0
c	0	0	0	2023.0	11900.0	12008.0	9569.0	13611.0	0.0	13611.0	13611.0	13135.0	5595.0	0	0	0	0	0
g	0	0	0	7572.0	0.0	0.0	0.0	0.0	5182.0	0.0	0.0	0.0	0.0	0	0	0	0	0
t	0	0	0	2587.0	1711.0	1603.0	565.0	0.0	3378.0	0.0	0.0	476.0	4101.0	0	0	0	0	0
MA0747.1_shift3 (SP8) 
; oligos_8nt_mkv5_m21 versus MA0747.1 (SP8); m=11/21; ncol2=12; w=11; offset=1; strand=D; shift=3; score=0.689471; ---rmCACgCCCmCy---
; cor=; Ncor=
a	0	0	0	52.0	54.0	25.0	133.0	7.0	25.0	5.0	2.0	0.0	90.0	13.0	31.0	0	0	0
c	0	0	0	27.0	113.0	167.0	33.0	167.0	37.0	167.0	167.0	167.0	77.0	167.0	52.0	0	0	0
g	0	0	0	78.0	0.0	0.0	1.0	1.0	167.0	6.0	3.0	4.0	6.0	21.0	1.0	0	0	0
t	0	0	0	10.0	4.0	13.0	2.0	5.0	39.0	2.0	0.0	15.0	3.0	39.0	82.0	0	0	0
MA1107.2_shift1 (KLF9) 
; oligos_8nt_mkv5_m21 versus MA1107.2 (KLF9); m=12/21; ncol2=16; w=12; offset=-1; strand=D; shift=1; score=0.674021; -crgCCACACCCAChyc-
; cor=; Ncor=
a	0	5359.0	8015.0	2862.0	4664.0	287.0	21899.0	221.0	19187.0	224.0	2428.0	146.0	18837.0	792.0	6948.0	4110.0	5875.0	0
c	0	10412.0	5108.0	4342.0	17839.0	24709.0	2559.0	24863.0	1070.0	24365.0	22117.0	24682.0	4339.0	20644.0	8797.0	10520.0	9519.0	0
g	0	5200.0	7779.0	16852.0	1660.0	291.0	708.0	353.0	4340.0	735.0	605.0	205.0	852.0	1778.0	3289.0	4423.0	5681.0	0
t	0	4608.0	4677.0	1523.0	1416.0	292.0	413.0	142.0	982.0	255.0	429.0	546.0	1551.0	2365.0	6545.0	6526.0	4504.0	0
MA1564.1_shift3 (SP9) 
; oligos_8nt_mkv5_m21 versus MA1564.1 (SP9); m=13/21; ncol2=12; w=11; offset=1; strand=D; shift=3; score=0.67079; ---rcCmCGCCCmcy---
; cor=; Ncor=
a	0	0	0	834.0	566.0	321.0	2451.0	2.0	211.0	22.0	0.0	39.0	1192.0	188.0	420.0	0	0	0
c	0	0	0	440.0	2451.0	2451.0	1127.0	2451.0	200.0	2451.0	2451.0	2451.0	1259.0	1863.0	1167.0	0	0	0
g	0	0	0	952.0	309.0	113.0	56.0	17.0	2451.0	0.0	0.0	24.0	38.0	191.0	204.0	0	0	0
t	0	0	0	226.0	518.0	284.0	96.0	9.0	173.0	14.0	30.0	412.0	353.0	588.0	660.0	0	0	0
MA0742.1_shift2 (Klf12) 
; oligos_8nt_mkv5_m21 versus MA0742.1 (Klf12); m=14/21; ncol2=15; w=12; offset=0; strand=D; shift=2; score=0.655051; --GrCCACGCCCwthtw-
; cor=; Ncor=
a	0	0	167.0	553.0	19.0	5.0	853.0	9.0	215.0	0.0	0.0	0.0	410.0	238.0	308.0	238.0	271.0	0
c	0	0	35.0	11.0	668.0	670.0	27.0	675.0	1.0	687.0	706.0	715.0	120.0	219.0	239.0	186.0	210.0	0
g	0	0	1158.0	531.0	8.0	12.0	2.0	0.0	1348.0	0.0	9.0	0.0	0.0	99.0	84.0	117.0	141.0	0
t	0	0	225.0	0.0	9.0	3.0	0.0	4.0	16.0	4.0	13.0	13.0	483.0	403.0	290.0	429.0	330.0	0
MA0740.1_shift2 (KLF14) 
; oligos_8nt_mkv5_m21 versus MA0740.1 (KLF14); m=15/21; ncol2=14; w=12; offset=0; strand=D; shift=2; score=0.647524; --krcCACGCCCmYyt--
; cor=; Ncor=
a	0	0	430.0	1205.0	526.0	0.0	1708.0	2.0	69.0	0.0	0.0	0.0	716.0	32.0	280.0	649.0	0	0
c	0	0	215.0	73.0	1360.0	1599.0	136.0	1596.0	36.0	1602.0	1604.0	1609.0	961.0	1463.0	594.0	741.0	0	0
g	0	0	966.0	2280.0	96.0	10.0	58.0	0.0	2939.0	3.0	3.0	4.0	1.0	15.0	89.0	314.0	0	0
t	0	0	693.0	71.0	404.0	248.0	5.0	2.0	31.0	0.0	6.0	65.0	31.0	559.0	1041.0	1670.0	0	0
MA1566.1_rc_shift3 (TBX3_rc) 
; oligos_8nt_mkv5_m21 versus MA1566.1_rc (TBX3_rc); m=16/21; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.623128; ---ttsACACcty-----
; cor=; Ncor=
a	0	0	0	578.0	484.0	1112.0	2544.0	0.0	2544.0	0.0	302.0	760.0	497.0	0	0	0	0	0
c	0	0	0	620.0	947.0	2544.0	155.0	2544.0	0.0	2544.0	2544.0	1207.0	1003.0	0	0	0	0	0
g	0	0	0	586.0	410.0	1471.0	634.0	0.0	735.0	45.0	862.0	481.0	399.0	0	0	0	0	0
t	0	0	0	760.0	2544.0	170.0	115.0	0.0	16.0	6.0	427.0	2544.0	644.0	0	0	0	0	0
MA0079.4_shift0 (SP1) 
; oligos_8nt_mkv5_m21 versus MA0079.4 (SP1); m=17/21; ncol2=15; w=12; offset=-2; strand=D; shift=0; score=0.620604; ywrRCCACGCCCmCh---
; cor=; Ncor=
a	7866.0	28233.0	28895.0	14584.0	962.0	55.0	42154.0	0.0	959.0	0.0	8.0	0.0	24666.0	1195.0	12598.0	0	0	0
c	13273.0	1872.0	1530.0	0.0	48854.0	49649.0	12672.0	49660.0	0.0	49666.0	49662.0	48772.0	24196.0	37612.0	15606.0	0	0	0
g	9691.0	999.0	19477.0	37543.0	82.0	0.0	0.0	0.0	48957.0	0.0	0.0	0.0	15.0	919.0	3044.0	0	0	0
t	18833.0	19877.0	1184.0	153.0	124.0	1670.0	0.0	31.0	867.0	17.0	0.0	1440.0	1373.0	10717.0	18415.0	0	0	0
MA0685.1_shift0 (SP4) 
; oligos_8nt_mkv5_m21 versus MA0685.1 (SP4); m=18/21; ncol2=17; w=12; offset=-2; strand=D; shift=0; score=0.537842; ywrGCCACGCCCmCtyy-
; cor=; Ncor=
a	621.0	2173.0	2600.0	939.0	260.0	2.0	3004.0	2.0	10.0	2.0	3.0	0.0	1840.0	113.0	1140.0	582.0	967.0	0
c	1405.0	156.0	146.0	6.0	4443.0	4492.0	991.0	4662.0	14.0	4681.0	4732.0	4667.0	2430.0	4276.0	897.0	1206.0	1180.0	0
g	823.0	65.0	1639.0	4774.0	0.0	5.0	3.0	0.0	5444.0	4.0	2.0	3.0	9.0	21.0	234.0	363.0	556.0	0
t	1622.0	1809.0	199.0	16.0	4.0	135.0	0.0	0.0	55.0	0.0	0.0	72.0	67.0	1067.0	3043.0	2078.0	1509.0	0
MA0657.1_shift1 (KLF13) 
; oligos_8nt_mkv5_m21 versus MA0657.1 (KLF13); m=19/21; ncol2=18; w=12; offset=-1; strand=D; shift=1; score=0.486187; -rtRmCACGCCCCYTTtt
; cor=; Ncor=
a	0	1508.0	733.0	1891.0	496.0	75.0	2384.0	0.0	24.0	0.0	4.0	1.0	509.0	3.0	156.0	247.0	735.0	404.0
c	0	248.0	46.0	0.0	923.0	924.0	0.0	1353.0	2.0	1596.0	1469.0	1760.0	1766.0	638.0	350.0	235.0	554.0	176.0
g	0	915.0	796.0	4630.0	58.0	2.0	11.0	7.0	3028.0	0.0	0.0	0.0	0.0	3.0	54.0	270.0	841.0	483.0
t	0	590.0	1766.0	59.0	102.0	61.0	0.0	3.0	9.0	7.0	0.0	16.0	10.0	1403.0	2040.0	2968.0	2247.0	1672.0
MA0807.1_rc_shift4 (TBX5_rc) 
; oligos_8nt_mkv5_m21 versus MA0807.1_rc (TBX5_rc); m=20/21; ncol2=8; w=8; offset=2; strand=R; shift=4; score=0.468071; ----TmACACCT------
; cor=; Ncor=
a	0	0	0	0	283.0	915.0	1804.0	0.0	1804.0	28.0	133.0	207.0	0	0	0	0	0	0
c	0	0	0	0	343.0	1804.0	201.0	1804.0	166.0	1804.0	1804.0	409.0	0	0	0	0	0	0
g	0	0	0	0	76.0	616.0	225.0	0.0	131.0	0.0	190.0	89.0	0	0	0	0	0	0
t	0	0	0	0	1804.0	126.0	162.0	27.0	45.0	0.0	235.0	1804.0	0	0	0	0	0	0
MA0130.1_shift2 (ZNF354C) 
; oligos_8nt_mkv5_m21 versus MA0130.1 (ZNF354C); m=21/21; ncol2=6; w=6; offset=0; strand=D; shift=2; score=0.467186; --mTCCAC----------
; cor=; Ncor=
a	0	0	7.0	3.0	0.0	0.0	16.0	0.0	0	0	0	0	0	0	0	0	0	0
c	0	0	6.0	2.0	16.0	16.0	0.0	15.0	0	0	0	0	0	0	0	0	0	0
g	0	0	3.0	0.0	0.0	0.0	0.0	1.0	0	0	0	0	0	0	0	0	0	0
t	0	0	0.0	11.0	0.0	0.0	0.0	0.0	0	0	0	0	0	0	0	0	0	0