Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m23/peak-motifs_oligos_8nt_mkv5_m23_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m23/peak-motifs_oligos_8nt_mkv5_m23.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m23/peak-motifs_oligos_8nt_mkv5_m23_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m23/peak-motifs_oligos_8nt_mkv5_m23.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m23/peak-motifs_oligos_8nt_mkv5_m23_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m23/peak-motifs_oligos_8nt_mkv5_m23_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m23/peak-motifs_oligos_8nt_mkv5_m23_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m23/peak-motifs_oligos_8nt_mkv5_m23_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m23/peak-motifs_oligos_8nt_mkv5_m23_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m23/peak-motifs_oligos_8nt_mkv5_m23_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m23/peak-motifs_oligos_8nt_mkv5_m23.tf
		file1	1	13	314
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv5_m23 MA1642.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 NEUROG2(var.2) 0.927 0.927 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv5_m23 MA1109.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 NEUROD1 0.940 0.806 13 13 12 14 0.8571 0.9231 0.9231 D 1
oligos_8nt_mkv5_m23 MA0499.2 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 MYOD1 0.792 0.792 13 13 13 13 1.0000 1.0000 1.0000 R 0
oligos_8nt_mkv5_m23 MA0745.2 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 SNAI2 0.746 0.746 13 13 13 13 1.0000 1.0000 1.0000 R 0
oligos_8nt_mkv5_m23 MA1618.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 Ptf1a 0.852 0.731 13 13 12 14 0.8571 0.9231 0.9231 D 1
oligos_8nt_mkv5_m23 MA1123.2 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 TWIST1 0.728 0.728 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv5_m23 MA1524.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 MSGN1 0.773 0.714 13 12 12 13 0.9231 0.9231 1.0000 R 1
oligos_8nt_mkv5_m23 MA1620.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 Ptf1a(var.3) 0.764 0.706 13 12 12 13 0.9231 0.9231 1.0000 R 1
oligos_8nt_mkv5_m23 MA1621.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 Rbpjl 0.755 0.702 13 14 13 14 0.9286 1.0000 0.9286 R 0
oligos_8nt_mkv5_m23 MA0521.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 Tcf12 0.827 0.700 13 11 11 13 0.8462 0.8462 1.0000 D 2
oligos_8nt_mkv5_m23 MA1619.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 Ptf1a(var.2) 0.751 0.693 13 12 12 13 0.9231 0.9231 1.0000 R 1
oligos_8nt_mkv5_m23 MA1641.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 MYF5 0.751 0.693 13 12 12 13 0.9231 0.9231 1.0000 D 1
oligos_8nt_mkv5_m23 MA1485.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 FERD3L 0.745 0.692 13 14 13 14 0.9286 1.0000 0.9286 R 0
oligos_8nt_mkv5_m23 MA0832.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 Tcf21 0.742 0.689 13 14 13 14 0.9286 1.0000 0.9286 D 0
oligos_8nt_mkv5_m23 MA0091.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 TAL1::TCF3 0.867 0.681 13 12 11 14 0.7857 0.8462 0.9167 R 2
oligos_8nt_mkv5_m23 MA0500.2 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 MYOG 0.715 0.660 13 12 12 13 0.9231 0.9231 1.0000 R 1
oligos_8nt_mkv5_m23 MA0817.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 BHLHE23 0.712 0.658 13 12 12 13 0.9231 0.9231 1.0000 D 1
oligos_8nt_mkv5_m23 MA1638.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 HAND2 0.849 0.653 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m23 MA0743.2 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 SCRT1 0.779 0.633 13 16 13 16 0.8125 1.0000 0.8125 D -3
oligos_8nt_mkv5_m23 MA0744.2 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 SCRT2 0.774 0.629 13 16 13 16 0.8125 1.0000 0.8125 D -3
oligos_8nt_mkv5_m23 MA0820.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 FIGLA 0.813 0.626 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_8nt_mkv5_m23 MA1472.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 BHLHA15(var.2) 0.813 0.625 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_8nt_mkv5_m23 MA0633.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 Twist2 0.792 0.609 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_8nt_mkv5_m23 MA1570.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 TFAP4(var.2) 0.789 0.607 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m23 MA0665.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 MSC 0.779 0.599 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_8nt_mkv5_m23 MA1467.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 ATOH1(var.2) 0.774 0.595 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m23 MA0461.2 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 Atoh1 0.758 0.583 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m23 MA0667.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 MYF6 0.756 0.581 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_8nt_mkv5_m23 MA1559.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 SNAI3 0.753 0.579 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m23 MA0691.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 TFAP4 0.752 0.578 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m23 MA1468.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 ATOH7 0.747 0.575 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m23 MA0816.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 Ascl2 0.725 0.558 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_8nt_mkv5_m23 MA0826.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 OLIG1 0.723 0.557 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m23 MA1100.2 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 ASCL1 0.721 0.554 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m23 MA1635.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 BHLHE22(var.2) 0.714 0.549 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m23 MA0100.3 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 MYB 0.707 0.544 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_8nt_mkv5_m23 MA0669.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 NEUROG2 0.706 0.543 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m23 MA1558.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 SNAI1 0.705 0.543 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_8nt_mkv5_m23 MA0827.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 OLIG3 0.704 0.541 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_8nt_mkv5_m23 MA0607.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 Bhlha15 0.834 0.513 13 8 8 13 0.6154 0.6154 1.0000 R 3
oligos_8nt_mkv5_m23 MA1647.1 oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23 PRDM4 0.756 0.454 13 11 9 15 0.6000 0.6923 0.8182 R -2 
 Host name	pedagogix
 Job started	2020-04-13.233735
 Job done	2020-04-13.233813
 Seconds	5.13
	user	5.13
	system	0.6
	cuser	29.17
;	csystem	2.1