One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m24/peak-motifs_oligos_8nt_mkv5_m24.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m24/peak-motifs_oligos_8nt_mkv5_m24_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m24_shift3 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m24_shift3 (oligos_8nt_mkv5_m24oligos_8nt_mkv5_m24)
; oligos_8nt_mkv5_m24 (oligos_8nt_mkv5_m24oligos_8nt_mkv5_m24); m=0 (reference); ncol1=13; shift=3; ncol=16; ---ccCCCAACCCCmc ; Alignment reference a 0 0 0 57 52 6 4 7 179 196 6 4 5 3 72 44 c 0 0 0 90 102 228 242 229 58 26 233 239 235 235 81 102 g 0 0 0 46 35 10 1 1 4 12 4 1 3 3 52 54 t 0 0 0 55 59 4 1 11 7 14 5 4 5 7 43 48

MA0039.4_shift3 (KLF4)
; oligos_8nt_mkv5_m24 versus MA0039.4 (KLF4); m=1/5; ncol2=12; w=12; offset=0; strand=D; shift=3; score= 0.7662; ---ssCCCCACCChs- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0

MA1653.1_shift3 (ZNF148)
; oligos_8nt_mkv5_m24 versus MA1653.1 (ZNF148); m=2/5; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.686672; ---ysCCCCTCCCcc- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0

MA1522.1_shift3 (MAZ)
; oligos_8nt_mkv5_m24 versus MA1522.1 (MAZ); m=3/5; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.595713; ---ssCCCCTCCcc-- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0

MA0599.1_shift4 (KLF5)
; oligos_8nt_mkv5_m24 versus MA0599.1 (KLF5); m=4/5; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.593249; ----gCCMCrCCCh-- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0

MA1656.1_shift0 (ZNF449)
; oligos_8nt_mkv5_m24 versus MA1656.1 (ZNF449); m=5/5; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.497458; cvaAGCCCAACcas-- ; cor=; Ncor= a 1809.0 2104.0 4135.0 6239.0 108.0 139.0 64.0 68.0 6851.0 6620.0 184.0 1143.0 2595.0 1670.0 0 0 c 2716.0 2320.0 1759.0 582.0 92.0 7088.0 7540.0 7479.0 300.0 96.0 7244.0 5029.0 1875.0 2195.0 0 0 g 1566.0 1921.0 1463.0 224.0 7368.0 322.0 28.0 54.0 182.0 829.0 167.0 473.0 1585.0 2237.0 0 0 t 1569.0 1315.0 303.0 615.0 92.0 111.0 28.0 59.0 327.0 115.0 65.0 1015.0 1605.0 1558.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv5_m24_shift3 (oligos_8nt_mkv5_m24oligos_8nt_mkv5_m24)				; oligos_8nt_mkv5_m24 (oligos_8nt_mkv5_m24oligos_8nt_mkv5_m24); m=0 (reference); ncol1=13; shift=3; ncol=16; ---ccCCCAACCCCmc ; Alignment reference a 0 0 0 57 52 6 4 7 179 196 6 4 5 3 72 44 c 0 0 0 90 102 228 242 229 58 26 233 239 235 235 81 102 g 0 0 0 46 35 10 1 1 4 12 4 1 3 3 52 54 t 0 0 0 55 59 4 1 11 7 14 5 4 5 7 43 48
MA0039.4_shift3 (KLF4)				; oligos_8nt_mkv5_m24 versus MA0039.4 (KLF4); m=1/5; ncol2=12; w=12; offset=0; strand=D; shift=3; score= 0.7662; ---ssCCCCACCChs- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0
MA1653.1_shift3 (ZNF148)				; oligos_8nt_mkv5_m24 versus MA1653.1 (ZNF148); m=2/5; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.686672; ---ysCCCCTCCCcc- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0
MA1522.1_shift3 (MAZ)				; oligos_8nt_mkv5_m24 versus MA1522.1 (MAZ); m=3/5; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.595713; ---ssCCCCTCCcc-- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0
MA0599.1_shift4 (KLF5)				; oligos_8nt_mkv5_m24 versus MA0599.1 (KLF5); m=4/5; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.593249; ----gCCMCrCCCh-- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0
MA1656.1_shift0 (ZNF449)				; oligos_8nt_mkv5_m24 versus MA1656.1 (ZNF449); m=5/5; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.497458; cvaAGCCCAACcas-- ; cor=; Ncor= a 1809.0 2104.0 4135.0 6239.0 108.0 139.0 64.0 68.0 6851.0 6620.0 184.0 1143.0 2595.0 1670.0 0 0 c 2716.0 2320.0 1759.0 582.0 92.0 7088.0 7540.0 7479.0 300.0 96.0 7244.0 5029.0 1875.0 2195.0 0 0 g 1566.0 1921.0 1463.0 224.0 7368.0 322.0 28.0 54.0 182.0 829.0 167.0 473.0 1585.0 2237.0 0 0 t 1569.0 1315.0 303.0 615.0 92.0 111.0 28.0 59.0 327.0 115.0 65.0 1015.0 1605.0 1558.0 0 0