Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m27/peak-motifs_oligos_8nt_mkv5_m27_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m27/peak-motifs_oligos_8nt_mkv5_m27.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m27/peak-motifs_oligos_8nt_mkv5_m27_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m27/peak-motifs_oligos_8nt_mkv5_m27.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m27/peak-motifs_oligos_8nt_mkv5_m27_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m27/peak-motifs_oligos_8nt_mkv5_m27_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m27/peak-motifs_oligos_8nt_mkv5_m27_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m27/peak-motifs_oligos_8nt_mkv5_m27_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m27/peak-motifs_oligos_8nt_mkv5_m27_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m27/peak-motifs_oligos_8nt_mkv5_m27_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m27/peak-motifs_oligos_8nt_mkv5_m27.tf
		file1	1	15	383
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv5_m27 MA0744.2 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 SCRT2 0.842 0.789 15 16 15 16 0.9375 1.0000 0.9375 D -1
oligos_8nt_mkv5_m27 MA0499.2 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 MYOD1 0.907 0.786 15 13 13 15 0.8667 0.8667 1.0000 R 2
oligos_8nt_mkv5_m27 MA0743.2 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 SCRT1 0.820 0.769 15 16 15 16 0.9375 1.0000 0.9375 D -1
oligos_8nt_mkv5_m27 MA0745.2 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 SNAI2 0.876 0.760 15 13 13 15 0.8667 0.8667 1.0000 R 2
oligos_8nt_mkv5_m27 MA0830.2 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 TCF4 0.798 0.691 15 13 13 15 0.8667 0.8667 1.0000 R 2
oligos_8nt_mkv5_m27 MA1621.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 Rbpjl 0.850 0.691 15 14 13 16 0.8125 0.8667 0.9286 R 2
oligos_8nt_mkv5_m27 MA1620.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 Ptf1a(var.3) 0.863 0.690 15 12 12 15 0.8000 0.8000 1.0000 R 3
oligos_8nt_mkv5_m27 MA1631.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 ASCL1(var.2) 0.779 0.676 15 13 13 15 0.8667 0.8667 1.0000 R 2
oligos_8nt_mkv5_m27 MA0521.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 Tcf12 0.879 0.645 15 11 11 15 0.7333 0.7333 1.0000 D 4
oligos_8nt_mkv5_m27 MA0832.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 Tcf21 0.768 0.624 15 14 13 16 0.8125 0.8667 0.9286 D 2
oligos_8nt_mkv5_m27 MA1641.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 MYF5 0.777 0.622 15 12 12 15 0.8000 0.8000 1.0000 D 3
oligos_8nt_mkv5_m27 MA1619.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 Ptf1a(var.2) 0.773 0.619 15 12 12 15 0.8000 0.8000 1.0000 R 3
oligos_8nt_mkv5_m27 MA1642.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 NEUROG2(var.2) 0.711 0.616 15 13 13 15 0.8667 0.8667 1.0000 D 2
oligos_8nt_mkv5_m27 MA1559.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 SNAI3 0.922 0.615 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m27 MA0500.2 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 MYOG 0.767 0.614 15 12 12 15 0.8000 0.8000 1.0000 R 3
oligos_8nt_mkv5_m27 MA1105.2 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 GRHL2 0.755 0.604 15 12 12 15 0.8000 0.8000 1.0000 D 2
oligos_8nt_mkv5_m27 MA1485.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 FERD3L 0.738 0.600 15 14 13 16 0.8125 0.8667 0.9286 R 2
oligos_8nt_mkv5_m27 MA0820.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 FIGLA 0.892 0.595 15 10 10 15 0.6667 0.6667 1.0000 R 4
oligos_8nt_mkv5_m27 MA0103.3 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 ZEB1 0.798 0.585 15 11 11 15 0.7333 0.7333 1.0000 R 3
oligos_8nt_mkv5_m27 MA1558.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 SNAI1 0.852 0.568 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m27 MA0665.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 MSC 0.838 0.559 15 10 10 15 0.6667 0.6667 1.0000 R 4
oligos_8nt_mkv5_m27 MA1618.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 Ptf1a 0.744 0.558 15 13 12 16 0.7500 0.8000 0.9231 D 3
oligos_8nt_mkv5_m27 MA1467.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 ATOH1(var.2) 0.827 0.552 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m27 MA1648.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 TCF12(var.2) 0.751 0.551 15 11 11 15 0.7333 0.7333 1.0000 R 3
oligos_8nt_mkv5_m27 MA0522.3 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 TCF3 0.744 0.546 15 11 11 15 0.7333 0.7333 1.0000 R 3
oligos_8nt_mkv5_m27 MA1472.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 BHLHA15(var.2) 0.816 0.544 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m27 MA0816.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 Ascl2 0.814 0.543 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m27 MA1109.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 NEUROD1 0.721 0.541 15 13 12 16 0.7500 0.8000 0.9231 D 3
oligos_8nt_mkv5_m27 MA0667.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 MYF6 0.811 0.541 15 10 10 15 0.6667 0.6667 1.0000 R 4
oligos_8nt_mkv5_m27 MA1100.2 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 ASCL1 0.797 0.532 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m27 MA0691.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 TFAP4 0.797 0.531 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m27 MA0091.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 TAL1::TCF3 0.746 0.513 15 12 11 16 0.6875 0.7333 0.9167 R 4
oligos_8nt_mkv5_m27 MA0819.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 CLOCK 0.755 0.503 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m27 MA1493.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 HES6 0.751 0.500 15 10 10 15 0.6667 0.6667 1.0000 R 4
oligos_8nt_mkv5_m27 MA1635.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 BHLHE22(var.2) 0.744 0.496 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m27 MA1570.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 TFAP4(var.2) 0.743 0.495 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m27 MA1638.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 HAND2 0.723 0.482 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m27 MA0048.2 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 NHLH1 0.721 0.481 15 10 10 15 0.6667 0.6667 1.0000 R 4
oligos_8nt_mkv5_m27 MA0626.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 Npas2 0.716 0.478 15 10 10 15 0.6667 0.6667 1.0000 R 4
oligos_8nt_mkv5_m27 MA0100.3 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 MYB 0.709 0.473 15 10 10 15 0.6667 0.6667 1.0000 R 4
oligos_8nt_mkv5_m27 MA0058.3 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 MAX 0.707 0.471 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv5_m27 MA0807.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 TBX5 0.795 0.424 15 8 8 15 0.5333 0.5333 1.0000 D 7
oligos_8nt_mkv5_m27 MA0806.1 oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27 TBX4 0.785 0.419 15 8 8 15 0.5333 0.5333 1.0000 D 7 
 Host name	pedagogix
 Job started	2020-04-13.233912
 Job done	2020-04-13.233959
 Seconds	6.71
	user	6.71
	system	0.79
	cuser	36.51
;	csystem	2.22