Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m28/peak-motifs_oligos_8nt_mkv5_m28_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m28/peak-motifs_oligos_8nt_mkv5_m28.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m28/peak-motifs_oligos_8nt_mkv5_m28_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m28/peak-motifs_oligos_8nt_mkv5_m28.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m28/peak-motifs_oligos_8nt_mkv5_m28_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m28/peak-motifs_oligos_8nt_mkv5_m28_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m28/peak-motifs_oligos_8nt_mkv5_m28_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m28/peak-motifs_oligos_8nt_mkv5_m28_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m28/peak-motifs_oligos_8nt_mkv5_m28_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m28/peak-motifs_oligos_8nt_mkv5_m28_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m28/peak-motifs_oligos_8nt_mkv5_m28.tf
		file1	1	16	237
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv5_m28 MA0685.1 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 SP4 0.803 0.756 16 17 16 17 0.9412 1.0000 0.9412 R 0
oligos_8nt_mkv5_m28 MA0516.2 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 SP2 0.836 0.697 16 17 15 18 0.8333 0.9375 0.8824 R 1
oligos_8nt_mkv5_m28 MA0746.2 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 SP3 0.847 0.688 16 13 13 16 0.8125 0.8125 1.0000 R 2
oligos_8nt_mkv5_m28 MA0740.1 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 KLF14 0.781 0.683 16 14 14 16 0.8750 0.8750 1.0000 R 1
oligos_8nt_mkv5_m28 MA0079.4 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 SP1 0.805 0.663 16 15 14 17 0.8235 0.8750 0.9333 R 2
oligos_8nt_mkv5_m28 MA1653.1 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 ZNF148 0.878 0.658 16 12 12 16 0.7500 0.7500 1.0000 R 3
oligos_8nt_mkv5_m28 MA1513.1 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 KLF15 0.946 0.650 16 11 11 16 0.6875 0.6875 1.0000 R 3
oligos_8nt_mkv5_m28 MA1564.1 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 SP9 0.855 0.641 16 12 12 16 0.7500 0.7500 1.0000 R 2
oligos_8nt_mkv5_m28 MA0753.2 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 ZNF740 0.782 0.636 16 13 13 16 0.8125 0.8125 1.0000 R 3
oligos_8nt_mkv5_m28 MA0039.4 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 KLF4 0.826 0.620 16 12 12 16 0.7500 0.7500 1.0000 R 3
oligos_8nt_mkv5_m28 MA0747.1 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 SP8 0.823 0.617 16 12 12 16 0.7500 0.7500 1.0000 R 2
oligos_8nt_mkv5_m28 MA0741.1 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 KLF16 0.884 0.608 16 11 11 16 0.6875 0.6875 1.0000 R 3
oligos_8nt_mkv5_m28 MA0599.1 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 KLF5 0.925 0.578 16 10 10 16 0.6250 0.6250 1.0000 R 4
oligos_8nt_mkv5_m28 MA1515.1 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 KLF2 0.831 0.572 16 11 11 16 0.6875 0.6875 1.0000 R 4
oligos_8nt_mkv5_m28 MA1522.1 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 MAZ 0.830 0.571 16 11 11 16 0.6875 0.6875 1.0000 R 4
oligos_8nt_mkv5_m28 MA0162.4 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 EGR1 0.742 0.567 16 14 13 17 0.7647 0.8125 0.9286 R -1
oligos_8nt_mkv5_m28 MA1627.1 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 Wt1 0.738 0.565 16 14 13 17 0.7647 0.8125 0.9286 R -1
oligos_8nt_mkv5_m28 MA1512.1 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 KLF11 0.818 0.563 16 11 11 16 0.6875 0.6875 1.0000 R 3
oligos_8nt_mkv5_m28 MA1102.2 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 CTCFL 0.835 0.541 16 12 11 17 0.6471 0.6875 0.9167 D -1
oligos_8nt_mkv5_m28 MA1517.1 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 KLF6 0.772 0.531 16 11 11 16 0.6875 0.6875 1.0000 R 4
oligos_8nt_mkv5_m28 MA1516.1 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 KLF3 0.767 0.527 16 11 11 16 0.6875 0.6875 1.0000 R 4
oligos_8nt_mkv5_m28 MA1511.1 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 KLF10 0.764 0.525 16 11 11 16 0.6875 0.6875 1.0000 R 3
oligos_8nt_mkv5_m28 MA1630.1 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 Znf281 0.754 0.519 16 11 11 16 0.6875 0.6875 1.0000 D 0
oligos_8nt_mkv5_m28 MA1578.1 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 VEZF1 0.742 0.464 16 10 10 16 0.6250 0.6250 1.0000 R 1
oligos_8nt_mkv5_m28 MA0155.1 oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28 INSM1 0.813 0.451 16 12 10 18 0.5556 0.6250 0.8333 D -2 
 Host name	pedagogix
 Job started	2020-04-13.234000
 Job done	2020-04-13.234024
 Seconds	3.58
	user	3.58
	system	0.38
	cuser	19.19
;	csystem	1.19