One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m29/peak-motifs_oligos_8nt_mkv5_m29.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m29/peak-motifs_oligos_8nt_mkv5_m29_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m29_shift4 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m29_shift4 (oligos_8nt_mkv5_m29oligos_8nt_mkv5_m29)
; oligos_8nt_mkv5_m29 (oligos_8nt_mkv5_m29oligos_8nt_mkv5_m29); m=0 (reference); ncol1=12; shift=4; ncol=16; ----ssCGCCtCGCss ; Alignment reference a 0 0 0 0 21 25 4 2 4 2 8 3 4 1 23 27 c 0 0 0 0 112 127 240 7 236 244 58 247 22 241 129 116 g 0 0 0 0 84 73 9 245 15 9 43 5 229 12 79 72 t 0 0 0 0 41 33 5 4 3 3 149 3 3 4 27 43

MA1515.1_shift6 (KLF2)
; oligos_8nt_mkv5_m29 versus MA1515.1 (KLF2); m=1/9; ncol2=11; w=10; offset=2; strand=D; shift=6; score=0.546736; ------srCCmCrCCC ; cor=; Ncor= a 0 0 0 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 c 0 0 0 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 g 0 0 0 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 t 0 0 0 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0

MA0599.1_shift7 (KLF5)
; oligos_8nt_mkv5_m29 versus MA0599.1 (KLF5); m=2/9; ncol2=10; w=9; offset=3; strand=D; shift=7; score=0.529972; -------gCCMCrCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 c 0 0 0 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 g 0 0 0 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0

MA1513.1_shift7 (KLF15)
; oligos_8nt_mkv5_m29 versus MA1513.1 (KLF15); m=3/9; ncol2=11; w=9; offset=3; strand=D; shift=7; score=0.503314; -------scCCCGCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 c 0 0 0 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 g 0 0 0 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 t 0 0 0 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0

MA0746.2_shift6 (SP3)
; oligos_8nt_mkv5_m29 versus MA0746.2 (SP3); m=4/9; ncol2=13; w=10; offset=2; strand=D; shift=6; score=0.502526; ------srCCACGCCC ; cor=; Ncor= a 0 0 0 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 c 0 0 0 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 g 0 0 0 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 t 0 0 0 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0

MA0741.1_shift7 (KLF16)
; oligos_8nt_mkv5_m29 versus MA0741.1 (KLF16); m=5/9; ncol2=11; w=9; offset=3; strand=D; shift=7; score=0.480676; -------gmCMCgCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 c 0 0 0 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 g 0 0 0 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 t 0 0 0 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0

MA1512.1_shift7 (KLF11)
; oligos_8nt_mkv5_m29 versus MA1512.1 (KLF11); m=6/9; ncol2=11; w=9; offset=3; strand=D; shift=7; score=0.46764; -------gcCACGCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 c 0 0 0 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 g 0 0 0 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 t 0 0 0 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0

MA1564.1_shift7 (SP9)
; oligos_8nt_mkv5_m29 versus MA1564.1 (SP9); m=7/9; ncol2=12; w=9; offset=3; strand=D; shift=7; score=0.455627; -------rcCmCGCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 c 0 0 0 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 g 0 0 0 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 t 0 0 0 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0

MA0747.1_shift7 (SP8)
; oligos_8nt_mkv5_m29 versus MA0747.1 (SP8); m=8/9; ncol2=12; w=9; offset=3; strand=D; shift=7; score=0.437124; -------rmCACgCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 c 0 0 0 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 g 0 0 0 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 t 0 0 0 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0

MA0471.2_rc_shift0 (E2F6_rc)
; oligos_8nt_mkv5_m29 versus MA0471.2_rc (E2F6_rc); m=9/9; ncol2=13; w=9; offset=-4; strand=R; shift=0; score=0.421354; syTTCCCGCCyyc--- ; cor=; Ncor= a 5600.0 4163.0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 6897.0 5665.0 5369.0 0 0 0 c 11405.0 12530.0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 11562.0 11649.0 12358.0 0 0 0 g 8477.0 7410.0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 5102.0 7405.0 8075.0 0 0 0 t 7616.0 8995.0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 9537.0 8379.0 7296.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv5_m29_shift4 (oligos_8nt_mkv5_m29oligos_8nt_mkv5_m29)				; oligos_8nt_mkv5_m29 (oligos_8nt_mkv5_m29oligos_8nt_mkv5_m29); m=0 (reference); ncol1=12; shift=4; ncol=16; ----ssCGCCtCGCss ; Alignment reference a 0 0 0 0 21 25 4 2 4 2 8 3 4 1 23 27 c 0 0 0 0 112 127 240 7 236 244 58 247 22 241 129 116 g 0 0 0 0 84 73 9 245 15 9 43 5 229 12 79 72 t 0 0 0 0 41 33 5 4 3 3 149 3 3 4 27 43
MA1515.1_shift6 (KLF2)				; oligos_8nt_mkv5_m29 versus MA1515.1 (KLF2); m=1/9; ncol2=11; w=10; offset=2; strand=D; shift=6; score=0.546736; ------srCCmCrCCC ; cor=; Ncor= a 0 0 0 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 c 0 0 0 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 g 0 0 0 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 t 0 0 0 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0
MA0599.1_shift7 (KLF5)				; oligos_8nt_mkv5_m29 versus MA0599.1 (KLF5); m=2/9; ncol2=10; w=9; offset=3; strand=D; shift=7; score=0.529972; -------gCCMCrCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 c 0 0 0 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 g 0 0 0 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0
MA1513.1_shift7 (KLF15)				; oligos_8nt_mkv5_m29 versus MA1513.1 (KLF15); m=3/9; ncol2=11; w=9; offset=3; strand=D; shift=7; score=0.503314; -------scCCCGCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 c 0 0 0 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 g 0 0 0 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 t 0 0 0 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0
MA0746.2_shift6 (SP3)				; oligos_8nt_mkv5_m29 versus MA0746.2 (SP3); m=4/9; ncol2=13; w=10; offset=2; strand=D; shift=6; score=0.502526; ------srCCACGCCC ; cor=; Ncor= a 0 0 0 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 c 0 0 0 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 g 0 0 0 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 t 0 0 0 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0
MA0741.1_shift7 (KLF16)				; oligos_8nt_mkv5_m29 versus MA0741.1 (KLF16); m=5/9; ncol2=11; w=9; offset=3; strand=D; shift=7; score=0.480676; -------gmCMCgCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 c 0 0 0 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 g 0 0 0 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 t 0 0 0 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0
MA1512.1_shift7 (KLF11)				; oligos_8nt_mkv5_m29 versus MA1512.1 (KLF11); m=6/9; ncol2=11; w=9; offset=3; strand=D; shift=7; score=0.46764; -------gcCACGCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 c 0 0 0 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 g 0 0 0 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 t 0 0 0 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0
MA1564.1_shift7 (SP9)				; oligos_8nt_mkv5_m29 versus MA1564.1 (SP9); m=7/9; ncol2=12; w=9; offset=3; strand=D; shift=7; score=0.455627; -------rcCmCGCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 c 0 0 0 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 g 0 0 0 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 t 0 0 0 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0
MA0747.1_shift7 (SP8)				; oligos_8nt_mkv5_m29 versus MA0747.1 (SP8); m=8/9; ncol2=12; w=9; offset=3; strand=D; shift=7; score=0.437124; -------rmCACgCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 c 0 0 0 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 g 0 0 0 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 t 0 0 0 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0
MA0471.2_rc_shift0 (E2F6_rc)				; oligos_8nt_mkv5_m29 versus MA0471.2_rc (E2F6_rc); m=9/9; ncol2=13; w=9; offset=-4; strand=R; shift=0; score=0.421354; syTTCCCGCCyyc--- ; cor=; Ncor= a 5600.0 4163.0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 6897.0 5665.0 5369.0 0 0 0 c 11405.0 12530.0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 11562.0 11649.0 12358.0 0 0 0 g 8477.0 7410.0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 5102.0 7405.0 8075.0 0 0 0 t 7616.0 8995.0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 9537.0 8379.0 7296.0 0 0 0