Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m3/peak-motifs_oligos_8nt_mkv5_m3_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m3/peak-motifs_oligos_8nt_mkv5_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m3/peak-motifs_oligos_8nt_mkv5_m3_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m3/peak-motifs_oligos_8nt_mkv5_m3.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m3/peak-motifs_oligos_8nt_mkv5_m3_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m3/peak-motifs_oligos_8nt_mkv5_m3_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m3/peak-motifs_oligos_8nt_mkv5_m3_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m3/peak-motifs_oligos_8nt_mkv5_m3_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m3/peak-motifs_oligos_8nt_mkv5_m3_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m3/peak-motifs_oligos_8nt_mkv5_m3_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m3/peak-motifs_oligos_8nt_mkv5_m3.tf
		file1	1	13	450
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv5_m3 MA1648.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 TCF12(var.2) 0.918 0.777 13 11 11 13 0.8462 0.8462 1.0000 R 2
oligos_8nt_mkv5_m3 MA1631.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 ASCL1(var.2) 0.903 0.774 13 13 12 14 0.8571 0.9231 0.9231 R 1
oligos_8nt_mkv5_m3 MA0522.3 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 TCF3 0.914 0.774 13 11 11 13 0.8462 0.8462 1.0000 R 2
oligos_8nt_mkv5_m3 MA0830.2 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 TCF4 0.883 0.757 13 13 12 14 0.8571 0.9231 0.9231 R 1
oligos_8nt_mkv5_m3 MA0103.3 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 ZEB1 0.873 0.739 13 11 11 13 0.8462 0.8462 1.0000 R 2
oligos_8nt_mkv5_m3 MA1558.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 SNAI1 0.904 0.695 13 10 10 13 0.7692 0.7692 1.0000 D 3
oligos_8nt_mkv5_m3 MA1559.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 SNAI3 0.881 0.677 13 10 10 13 0.7692 0.7692 1.0000 D 3
oligos_8nt_mkv5_m3 MA0745.2 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 SNAI2 0.783 0.671 13 13 12 14 0.8571 0.9231 0.9231 R 1
oligos_8nt_mkv5_m3 MA0499.2 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 MYOD1 0.767 0.657 13 13 12 14 0.8571 0.9231 0.9231 R 1
oligos_8nt_mkv5_m3 MA0820.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 FIGLA 0.848 0.652 13 10 10 13 0.7692 0.7692 1.0000 R 3
oligos_8nt_mkv5_m3 MA1628.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 Zic1::Zic2 0.768 0.650 13 11 11 13 0.8462 0.8462 1.0000 D 0
oligos_8nt_mkv5_m3 MA1621.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 Rbpjl 0.812 0.649 13 14 12 15 0.8000 0.9231 0.8571 R 1
oligos_8nt_mkv5_m3 MA1620.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 Ptf1a(var.3) 0.810 0.636 13 12 11 14 0.7857 0.8462 0.9167 R 2
oligos_8nt_mkv5_m3 MA1100.2 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 ASCL1 0.811 0.624 13 10 10 13 0.7692 0.7692 1.0000 D 3
oligos_8nt_mkv5_m3 MA0816.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 Ascl2 0.805 0.619 13 10 10 13 0.7692 0.7692 1.0000 R 3
oligos_8nt_mkv5_m3 MA0059.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 MAX::MYC 0.715 0.605 13 11 11 13 0.8462 0.8462 1.0000 D 2
oligos_8nt_mkv5_m3 MA0744.2 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 SCRT2 0.731 0.594 13 16 13 16 0.8125 1.0000 0.8125 D -2
oligos_8nt_mkv5_m3 MA0048.2 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 NHLH1 0.769 0.591 13 10 10 13 0.7692 0.7692 1.0000 R 3
oligos_8nt_mkv5_m3 MA0743.2 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 SCRT1 0.725 0.589 13 16 13 16 0.8125 1.0000 0.8125 D -2
oligos_8nt_mkv5_m3 MA0500.2 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 MYOG 0.749 0.588 13 12 11 14 0.7857 0.8462 0.9167 R 2
oligos_8nt_mkv5_m3 MA1629.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 Zic2 0.729 0.583 13 14 12 15 0.8000 0.9231 0.8571 D -2
oligos_8nt_mkv5_m3 MA1472.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 BHLHA15(var.2) 0.758 0.583 13 10 10 13 0.7692 0.7692 1.0000 D 3
oligos_8nt_mkv5_m3 MA0147.3 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 MYC 0.713 0.560 13 12 11 14 0.7857 0.8462 0.9167 R 2
oligos_8nt_mkv5_m3 MA1635.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 BHLHE22(var.2) 0.725 0.558 13 10 10 13 0.7692 0.7692 1.0000 R 3
oligos_8nt_mkv5_m3 MA0665.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 MSC 0.725 0.558 13 10 10 13 0.7692 0.7692 1.0000 R 3
oligos_8nt_mkv5_m3 MA0521.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 Tcf12 0.779 0.556 13 11 10 14 0.7143 0.7692 0.9091 D 3
oligos_8nt_mkv5_m3 MA0058.3 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 MAX 0.715 0.550 13 10 10 13 0.7692 0.7692 1.0000 R 3
oligos_8nt_mkv5_m3 MA1467.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 ATOH1(var.2) 0.711 0.547 13 10 10 13 0.7692 0.7692 1.0000 D 3
oligos_8nt_mkv5_m3 MA0825.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 MNT 0.710 0.546 13 10 10 13 0.7692 0.7692 1.0000 D 3
oligos_8nt_mkv5_m3 MA1638.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 HAND2 0.705 0.542 13 10 10 13 0.7692 0.7692 1.0000 D 3
oligos_8nt_mkv5_m3 MA0622.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 Mlxip 0.743 0.457 13 8 8 13 0.6154 0.6154 1.0000 D 4
oligos_8nt_mkv5_m3 MA0807.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 TBX5 0.898 0.449 13 8 7 14 0.5000 0.5385 0.8750 D 6
oligos_8nt_mkv5_m3 MA0806.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 TBX4 0.897 0.449 13 8 7 14 0.5000 0.5385 0.8750 D 6
oligos_8nt_mkv5_m3 MA0803.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 TBX15 0.862 0.431 13 8 7 14 0.5000 0.5385 0.8750 D 6
oligos_8nt_mkv5_m3 MA0805.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 TBX1 0.847 0.423 13 8 7 14 0.5000 0.5385 0.8750 D 6
oligos_8nt_mkv5_m3 MA0801.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 MGA 0.836 0.418 13 8 7 14 0.5000 0.5385 0.8750 D 6
oligos_8nt_mkv5_m3 MA1565.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 TBX18 0.741 0.417 13 12 9 16 0.5625 0.6923 0.7500 D 4
oligos_8nt_mkv5_m3 MA1567.1 oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3 TBX6 0.771 0.411 13 10 8 15 0.5333 0.6154 0.8000 D 5 
 Host name	pedagogix
 Job started	2020-04-13.233037
 Job done	2020-04-13.233120
 Seconds	5.95
	user	5.96
	system	0.68
	cuser	33.68
;	csystem	2.04