One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m30/peak-motifs_oligos_8nt_mkv5_m30.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m30/peak-motifs_oligos_8nt_mkv5_m30_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m30_shift0 ; 13 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m30_shift0 (oligos_8nt_mkv5_m30oligos_8nt_mkv5_m30)
; oligos_8nt_mkv5_m30 (oligos_8nt_mkv5_m30oligos_8nt_mkv5_m30); m=0 (reference); ncol1=12; shift=0; ncol=13; gsAGCAGTTGby- ; Alignment reference a 30 28 139 10 3 135 2 2 1 3 13 15 0 c 31 46 2 3 136 3 0 0 4 1 43 54 0 g 55 36 0 123 0 2 132 2 1 136 41 28 0 t 25 31 0 5 2 1 7 137 135 1 44 44 0

MA0100.3_rc_shift2 (MYB_rc)
; oligos_8nt_mkv5_m30 versus MA0100.3_rc (MYB_rc); m=1/12; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.721753; --kdCAGTTGvk- ; cor=; Ncor= a 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 c 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 g 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 t 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0

MA1631.1_rc_shift0 (ASCL1(var.2)_rc)
; oligos_8nt_mkv5_m30 versus MA1631.1_rc (ASCL1(var.2)_rc); m=2/12; ncol2=13; w=12; offset=0; strand=R; shift=0; score=0.680126; gsrGCAGGTGchg ; cor=; Ncor= a 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 c 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 g 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 t 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0

MA1648.1_rc_shift1 (TCF12(var.2)_rc)
; oligos_8nt_mkv5_m30 versus MA1648.1_rc (TCF12(var.2)_rc); m=3/12; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.676203; -srGCAGGTGss- ; cor=; Ncor= a 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 c 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 g 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 t 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0

MA0522.3_rc_shift1 (TCF3_rc)
; oligos_8nt_mkv5_m30 versus MA0522.3_rc (TCF3_rc); m=4/12; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.671045; -ssGCAGGTGbs- ; cor=; Ncor= a 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 c 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 g 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 t 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0

MA0830.2_rc_shift0 (TCF4_rc)
; oligos_8nt_mkv5_m30 versus MA0830.2_rc (TCF4_rc); m=5/12; ncol2=13; w=12; offset=0; strand=R; shift=0; score=0.653291; ssggCAGGTGccg ; cor=; Ncor= a 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 c 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 g 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 t 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0

MA0816.1_rc_shift2 (Ascl2_rc)
; oligos_8nt_mkv5_m30 versus MA0816.1_rc (Ascl2_rc); m=6/12; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.644977; --rrCAGCTGyt- ; cor=; Ncor= a 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 c 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 g 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 t 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0

MA1100.2_shift2 (ASCL1)
; oligos_8nt_mkv5_m30 versus MA1100.2 (ASCL1); m=7/12; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.615672; --rrCAGCTGcy- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0

MA0500.2_rc_shift1 (MYOG_rc)
; oligos_8nt_mkv5_m30 versus MA0500.2_rc (MYOG_rc); m=8/12; ncol2=12; w=11; offset=1; strand=R; shift=1; score= 0.6146; -sarCAGCTGyts ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0

MA1472.1_shift2 (BHLHA15(var.2))
; oligos_8nt_mkv5_m30 versus MA1472.1 (BHLHA15(var.2)); m=9/12; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.604663; --avCAGCTGyy- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0

MA0048.2_rc_shift2 (NHLH1_rc)
; oligos_8nt_mkv5_m30 versus MA0048.2_rc (NHLH1_rc); m=10/12; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.594699; --mGCAGCTGCg- ; cor=; Ncor= a 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 c 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 g 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 t 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0

MA0667.1_rc_shift2 (MYF6_rc)
; oligos_8nt_mkv5_m30 versus MA0667.1_rc (MYF6_rc); m=11/12; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.586405; --RACAGyTGTT- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 c 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 g 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 t 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0

MA0521.1_shift2 (Tcf12)
; oligos_8nt_mkv5_m30 versus MA0521.1 (Tcf12); m=12/12; ncol2=11; w=10; offset=2; strand=D; shift=2; score=0.546412; --rRCAGCTGswg ; cor=; Ncor= a 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv5_m30_shift0 (oligos_8nt_mkv5_m30oligos_8nt_mkv5_m30)				; oligos_8nt_mkv5_m30 (oligos_8nt_mkv5_m30oligos_8nt_mkv5_m30); m=0 (reference); ncol1=12; shift=0; ncol=13; gsAGCAGTTGby- ; Alignment reference a 30 28 139 10 3 135 2 2 1 3 13 15 0 c 31 46 2 3 136 3 0 0 4 1 43 54 0 g 55 36 0 123 0 2 132 2 1 136 41 28 0 t 25 31 0 5 2 1 7 137 135 1 44 44 0
MA0100.3_rc_shift2 (MYB_rc)				; oligos_8nt_mkv5_m30 versus MA0100.3_rc (MYB_rc); m=1/12; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.721753; --kdCAGTTGvk- ; cor=; Ncor= a 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 c 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 g 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 t 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0
MA1631.1_rc_shift0 (ASCL1(var.2)_rc)				; oligos_8nt_mkv5_m30 versus MA1631.1_rc (ASCL1(var.2)_rc); m=2/12; ncol2=13; w=12; offset=0; strand=R; shift=0; score=0.680126; gsrGCAGGTGchg ; cor=; Ncor= a 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 c 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 g 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 t 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0
MA1648.1_rc_shift1 (TCF12(var.2)_rc)				; oligos_8nt_mkv5_m30 versus MA1648.1_rc (TCF12(var.2)_rc); m=3/12; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.676203; -srGCAGGTGss- ; cor=; Ncor= a 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 c 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 g 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 t 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0
MA0522.3_rc_shift1 (TCF3_rc)				; oligos_8nt_mkv5_m30 versus MA0522.3_rc (TCF3_rc); m=4/12; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.671045; -ssGCAGGTGbs- ; cor=; Ncor= a 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 c 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 g 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 t 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0
MA0830.2_rc_shift0 (TCF4_rc)				; oligos_8nt_mkv5_m30 versus MA0830.2_rc (TCF4_rc); m=5/12; ncol2=13; w=12; offset=0; strand=R; shift=0; score=0.653291; ssggCAGGTGccg ; cor=; Ncor= a 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 c 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 g 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 t 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0
MA0816.1_rc_shift2 (Ascl2_rc)				; oligos_8nt_mkv5_m30 versus MA0816.1_rc (Ascl2_rc); m=6/12; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.644977; --rrCAGCTGyt- ; cor=; Ncor= a 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 c 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 g 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 t 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0
MA1100.2_shift2 (ASCL1)				; oligos_8nt_mkv5_m30 versus MA1100.2 (ASCL1); m=7/12; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.615672; --rrCAGCTGcy- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0
MA0500.2_rc_shift1 (MYOG_rc)				; oligos_8nt_mkv5_m30 versus MA0500.2_rc (MYOG_rc); m=8/12; ncol2=12; w=11; offset=1; strand=R; shift=1; score= 0.6146; -sarCAGCTGyts ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0
MA1472.1_shift2 (BHLHA15(var.2))				; oligos_8nt_mkv5_m30 versus MA1472.1 (BHLHA15(var.2)); m=9/12; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.604663; --avCAGCTGyy- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0
MA0048.2_rc_shift2 (NHLH1_rc)				; oligos_8nt_mkv5_m30 versus MA0048.2_rc (NHLH1_rc); m=10/12; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.594699; --mGCAGCTGCg- ; cor=; Ncor= a 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 c 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 g 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 t 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0
MA0667.1_rc_shift2 (MYF6_rc)				; oligos_8nt_mkv5_m30 versus MA0667.1_rc (MYF6_rc); m=11/12; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.586405; --RACAGyTGTT- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 c 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 g 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 t 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0
MA0521.1_shift2 (Tcf12)				; oligos_8nt_mkv5_m30 versus MA0521.1 (Tcf12); m=12/12; ncol2=11; w=10; offset=2; strand=D; shift=2; score=0.546412; --rRCAGCTGswg ; cor=; Ncor= a 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0