Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m31/peak-motifs_oligos_8nt_mkv5_m31_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m31/peak-motifs_oligos_8nt_mkv5_m31.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m31/peak-motifs_oligos_8nt_mkv5_m31_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m31/peak-motifs_oligos_8nt_mkv5_m31.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m31/peak-motifs_oligos_8nt_mkv5_m31_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m31/peak-motifs_oligos_8nt_mkv5_m31_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m31/peak-motifs_oligos_8nt_mkv5_m31_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m31/peak-motifs_oligos_8nt_mkv5_m31_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m31/peak-motifs_oligos_8nt_mkv5_m31_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m31/peak-motifs_oligos_8nt_mkv5_m31_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m31/peak-motifs_oligos_8nt_mkv5_m31.tf
		file1	1	12	173
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv5_m31 MA1130.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 FOSL2::JUN 0.873 0.873 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv5_m31 MA1137.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 FOSL1::JUNB 0.900 0.831 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv5_m31 MA1128.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 FOSL1::JUN 0.882 0.814 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv5_m31 MA1141.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 FOS::JUND 0.879 0.811 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_8nt_mkv5_m31 MA0477.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 FOSL1 0.866 0.799 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv5_m31 MA0491.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 JUND 0.863 0.796 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv5_m31 MA0490.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 JUNB 0.862 0.795 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv5_m31 MA0462.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 BATF::JUN 0.861 0.789 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_8nt_mkv5_m31 MA1634.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 BATF 0.858 0.787 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_8nt_mkv5_m31 MA0835.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 BATF3 0.856 0.785 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_8nt_mkv5_m31 MA1134.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 FOS::JUNB 0.778 0.778 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_8nt_mkv5_m31 MA0476.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 FOS 0.825 0.756 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_8nt_mkv5_m31 MA0841.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 NFE2 0.822 0.754 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_8nt_mkv5_m31 MA1622.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 Smad2::Smad3 0.869 0.745 12 14 12 14 0.8571 1.0000 0.8571 R 0
oligos_8nt_mkv5_m31 MA1142.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 FOSL1::JUND 0.887 0.739 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv5_m31 MA0099.3 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 FOS::JUN 0.884 0.736 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv5_m31 MA1135.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 FOSB::JUNB 0.879 0.732 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv5_m31 MA1138.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 FOSL2::JUNB 0.872 0.727 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv5_m31 MA1144.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 FOSL2::JUND 0.865 0.720 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv5_m31 MA1132.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 JUN::JUNB 0.859 0.716 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv5_m31 MA0478.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 FOSL2 0.766 0.702 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_8nt_mkv5_m31 MA1633.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 BACH1 0.727 0.671 12 13 12 13 0.9231 1.0000 0.9231 R -1
oligos_8nt_mkv5_m31 MA1639.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 MEIS1(var.2) 0.703 0.649 12 13 12 13 0.9231 1.0000 0.9231 D -1
oligos_8nt_mkv5_m31 MA0655.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 JDP2 0.831 0.623 12 9 9 12 0.7500 0.7500 1.0000 R 2
oligos_8nt_mkv5_m31 MA0489.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 JUN(var.2) 0.775 0.569 12 14 11 15 0.7333 0.9167 0.7857 D -3
oligos_8nt_mkv5_m31 MA0496.3 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 MAFK 0.709 0.567 12 15 12 15 0.8000 1.0000 0.8000 R -2
oligos_8nt_mkv5_m31 MA1101.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 BACH2 0.794 0.501 12 19 12 19 0.6316 1.0000 0.6316 R -3
oligos_8nt_mkv5_m31 MA0912.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 HOXD3 0.855 0.461 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_8nt_mkv5_m31 MA0902.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 HOXB2 0.840 0.452 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0893.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 GSX2 0.836 0.450 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0875.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 BARX1 0.835 0.449 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0132.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 PDX1 0.833 0.449 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA1499.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 HOXB4 0.825 0.444 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0067.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 Pax2 0.824 0.444 12 8 7 13 0.5385 0.5833 0.8750 D 5
oligos_8nt_mkv5_m31 MA0876.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 BSX 0.820 0.441 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA1507.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 HOXD4 0.813 0.438 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0158.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 HOXA5 0.812 0.437 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0723.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 VAX2 0.810 0.436 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_8nt_mkv5_m31 MA1496.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 HOXA4 0.808 0.435 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA1504.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 HOXC4 0.806 0.434 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0903.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 HOXB3 0.758 0.433 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_8nt_mkv5_m31 MA0722.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 VAX1 0.802 0.432 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_8nt_mkv5_m31 MA0612.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 EMX1 0.801 0.432 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA1498.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 HOXA7 0.799 0.430 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0888.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 EVX2 0.750 0.429 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_8nt_mkv5_m31 MA0726.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 VSX2 0.795 0.428 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_8nt_mkv5_m31 MA0658.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 LHX6 0.746 0.426 12 10 8 14 0.5714 0.6667 0.8000 R -2
oligos_8nt_mkv5_m31 MA0725.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 VSX1 0.792 0.426 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_8nt_mkv5_m31 MA1500.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 HOXB6 0.790 0.426 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_8nt_mkv5_m31 MA0900.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 HOXA2 0.789 0.425 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0630.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 SHOX 0.788 0.424 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_8nt_mkv5_m31 MA1577.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 TLX2 0.788 0.424 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0648.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 GSC 0.741 0.423 12 10 8 14 0.5714 0.6667 0.8000 R -2
oligos_8nt_mkv5_m31 MA0724.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 VENTX 0.846 0.423 12 9 7 14 0.5000 0.5833 0.7778 D -2
oligos_8nt_mkv5_m31 MA1518.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 LHX1 0.783 0.422 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0705.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 Lhx8 0.783 0.421 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_8nt_mkv5_m31 MA0891.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 GSC2 0.737 0.421 12 10 8 14 0.5714 0.6667 0.8000 R -2
oligos_8nt_mkv5_m31 MA0068.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 PAX4 0.781 0.420 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_8nt_mkv5_m31 MA1502.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 HOXB8 0.776 0.418 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0027.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 EN1 0.776 0.418 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0717.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 RAX2 0.775 0.418 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0892.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 GSX1 0.729 0.417 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_8nt_mkv5_m31 MA0887.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 EVX1 0.727 0.415 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_8nt_mkv5_m31 MA0720.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 Shox2 0.769 0.414 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0886.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 EMX2 0.725 0.414 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_8nt_mkv5_m31 MA0904.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 HOXB5 0.769 0.414 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_8nt_mkv5_m31 MA1481.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 DRGX 0.767 0.413 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0721.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 UNCX 0.766 0.412 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0498.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 MEIS1 0.704 0.411 12 7 7 12 0.5833 0.5833 1.0000 R 4
oligos_8nt_mkv5_m31 MA0910.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 HOXD8 0.763 0.411 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0628.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 POU6F1 0.717 0.410 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_8nt_mkv5_m31 MA0710.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 NOTO 0.717 0.410 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_8nt_mkv5_m31 MA1495.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 HOXA1 0.760 0.409 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_8nt_mkv5_m31 MA0704.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 Lhx4 0.759 0.409 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA1463.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 ARGFX 0.714 0.408 12 10 8 14 0.5714 0.6667 0.8000 R -2
oligos_8nt_mkv5_m31 MA0661.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 MEOX1 0.712 0.407 12 10 8 14 0.5714 0.6667 0.8000 R -2
oligos_8nt_mkv5_m31 MA0701.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 LHX9 0.755 0.407 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0716.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 PRRX1 0.755 0.407 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0711.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 OTX1 0.755 0.406 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_8nt_mkv5_m31 MA0654.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 ISX 0.754 0.406 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0889.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 GBX1 0.709 0.405 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_8nt_mkv5_m31 MA0666.1 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 MSX1 0.752 0.405 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv5_m31 MA0682.2 oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31 PITX1 0.748 0.403 12 8 7 13 0.5385 0.5833 0.8750 R -1 
 Host name	pedagogix
 Job started	2020-04-13.234046
 Job done	2020-04-13.234224
 Seconds	14.08
	user	14.08
	system	2.07
	cuser	75.31
;	csystem	4.89