One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m32/peak-motifs_oligos_8nt_mkv5_m32.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m32/peak-motifs_oligos_8nt_mkv5_m32_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m32_shift1 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_8nt_mkv5_m32_shift1 (oligos_8nt_mkv5_m32oligos_8nt_mkv5_m32) |
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; oligos_8nt_mkv5_m32 (oligos_8nt_mkv5_m32oligos_8nt_mkv5_m32); m=0 (reference); ncol1=12; shift=1; ncol=13; -ssCAGCCGCAgc
; Alignment reference
a 0 26 28 1 136 7 2 0 0 1 136 17 29
c 0 61 56 162 19 2 168 173 0 166 14 43 84
g 0 58 69 7 18 161 3 0 173 3 23 92 42
t 0 28 20 3 0 3 0 0 0 3 0 21 18
|
| MA1583.1_shift0 (ZFP57) |
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; oligos_8nt_mkv5_m32 versus MA1583.1 (ZFP57); m=1/1; ncol2=13; w=12; offset=-1; strand=D; shift=0; score=0.662872; bsrtTGCCGCAsb
; cor=; Ncor=
a 1156.0 1553.0 2236.0 639.0 12.0 24.0 26.0 11.0 91.0 38.0 5116.0 1450.0 1351.0
c 1721.0 1611.0 1514.0 1061.0 37.0 71.0 6254.0 5595.0 16.0 5828.0 331.0 1699.0 1665.0
g 1829.0 1598.0 1643.0 1255.0 140.0 6213.0 16.0 719.0 6166.0 279.0 729.0 1896.0 1627.0
t 1626.0 1570.0 939.0 3377.0 6143.0 24.0 36.0 7.0 59.0 187.0 156.0 1287.0 1689.0
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