One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m35/peak-motifs_oligos_8nt_mkv5_m35.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m35/peak-motifs_oligos_8nt_mkv5_m35_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m35_shift6 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m35_shift6 (oligos_8nt_mkv5_m35oligos_8nt_mkv5_m35)
; oligos_8nt_mkv5_m35 (oligos_8nt_mkv5_m35oligos_8nt_mkv5_m35); m=0 (reference); ncol1=12; shift=6; ncol=20; ------krGGAGGTGAmr-- ; Alignment reference a 0 0 0 0 0 0 28 41 1 0 146 4 7 5 7 155 43 47 0 0 c 0 0 0 0 0 0 34 37 5 4 8 29 0 4 2 1 65 35 0 0 g 0 0 0 0 0 0 51 57 155 155 5 128 151 8 146 4 40 50 0 0 t 0 0 0 0 0 0 49 27 1 3 3 1 4 145 7 2 14 30 0 0

MA1652.1_shift5 (ZKSCAN5)
; oligos_8nt_mkv5_m35 versus MA1652.1 (ZKSCAN5); m=1/10; ncol2=14; w=12; offset=-1; strand=D; shift=5; score=0.803692; -----rgaGGArGTGAgrr- ; cor=; Ncor= a 0 0 0 0 0 870.0 822.0 1510.0 136.0 38.0 3199.0 1446.0 92.0 73.0 43.0 3199.0 375.0 1268.0 1169.0 0 c 0 0 0 0 0 636.0 704.0 315.0 30.0 27.0 62.0 27.0 37.0 86.0 24.0 41.0 370.0 504.0 569.0 0 g 0 0 0 0 0 1161.0 1197.0 801.0 3111.0 3236.0 47.0 1827.0 3149.0 76.0 3251.0 62.0 2034.0 1078.0 1052.0 0 t 0 0 0 0 0 660.0 604.0 701.0 50.0 26.0 19.0 27.0 49.0 3092.0 9.0 25.0 548.0 477.0 537.0 0

MA1522.1_rc_shift6 (MAZ_rc)
; oligos_8nt_mkv5_m35 versus MA1522.1_rc (MAZ_rc); m=2/10; ncol2=11; w=11; offset=0; strand=R; shift=6; score=0.672046; ------ggGGAGGGGss--- ; cor=; Ncor= a 0 0 0 0 0 0 3733.0 2814.0 0.0 4.0 14927.0 1.0 6.0 0.0 26.0 3013.0 3108.0 0 0 0 c 0 0 0 0 0 0 2539.0 1768.0 96.0 8.0 130.0 347.0 290.0 384.0 75.0 5163.0 4277.0 0 0 0 g 0 0 0 0 0 0 6775.0 9372.0 14944.0 14961.0 0.0 14676.0 14731.0 14630.0 14945.0 5068.0 5198.0 0 0 0 t 0 0 0 0 0 0 2016.0 1109.0 23.0 90.0 6.0 39.0 36.0 49.0 17.0 1819.0 2480.0 0 0 0

MA1648.1_rc_shift6 (TCF12(var.2)_rc)
; oligos_8nt_mkv5_m35 versus MA1648.1_rc (TCF12(var.2)_rc); m=3/10; ncol2=11; w=11; offset=0; strand=R; shift=6; score=0.649551; ------srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0

MA0522.3_rc_shift6 (TCF3_rc)
; oligos_8nt_mkv5_m35 versus MA0522.3_rc (TCF3_rc); m=4/10; ncol2=11; w=11; offset=0; strand=R; shift=6; score=0.647739; ------ssGCAGGTGbs--- ; cor=; Ncor= a 0 0 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 c 0 0 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 g 0 0 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 t 0 0 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0

MA1653.1_rc_shift5 (ZNF148_rc)
; oligos_8nt_mkv5_m35 versus MA1653.1_rc (ZNF148_rc); m=5/10; ncol2=12; w=11; offset=-1; strand=R; shift=5; score=0.600963; -----ggGGGAGGGGsr--- ; cor=; Ncor= a 0 0 0 0 0 1180.0 1190.0 1082.0 465.0 67.0 10040.0 66.0 136.0 200.0 113.0 2664.0 2966.0 0 0 0 c 0 0 0 0 0 2064.0 1924.0 392.0 460.0 112.0 1012.0 211.0 401.0 471.0 205.0 3215.0 2241.0 0 0 0 g 0 0 0 0 0 7114.0 7239.0 9283.0 9922.0 10954.0 14.0 10833.0 10526.0 10396.0 10799.0 4057.0 4593.0 0 0 0 t 0 0 0 0 0 841.0 846.0 442.0 352.0 66.0 133.0 89.0 136.0 132.0 82.0 1263.0 1399.0 0 0 0

MA0081.2_rc_shift2 (SPIB_rc)
; oligos_8nt_mkv5_m35 versus MA0081.2_rc (SPIB_rc); m=6/10; ncol2=16; w=12; offset=-4; strand=R; shift=2; score=0.565065; --raaaGAGGAAGTGara-- ; cor=; Ncor= a 0 0 10150.0 14333.0 16580.0 17264.0 3481.0 19719.0 1034.0 426.0 26297.0 26087.0 1445.0 1323.0 859.0 15129.0 9411.0 11760.0 0 0 c 0 0 4165.0 2409.0 2087.0 781.0 2316.0 1829.0 129.0 153.0 243.0 157.0 2516.0 669.0 1721.0 3193.0 4544.0 4026.0 0 0 g 0 0 8589.0 6029.0 5425.0 3922.0 20113.0 4517.0 25492.0 26145.0 200.0 236.0 22730.0 619.0 23971.0 6429.0 8293.0 5797.0 0 0 t 0 0 4026.0 4159.0 2838.0 4963.0 1020.0 865.0 275.0 206.0 190.0 450.0 239.0 24319.0 379.0 2179.0 4682.0 5347.0 0 0

MA0645.1_shift5 (ETV6)
; oligos_8nt_mkv5_m35 versus MA0645.1 (ETV6); m=7/10; ncol2=10; w=9; offset=-1; strand=D; shift=5; score=0.501194; -----msCGGAAGTr----- ; cor=; Ncor= a 0 0 0 0 0 9414.0 342.0 1476.0 7.0 21.0 6687.0 6687.0 768.0 184.0 2049.0 0 0 0 0 0 c 0 0 0 0 0 6562.0 2394.0 6379.0 0.0 0.0 0.0 13.0 52.0 834.0 342.0 0 0 0 0 0 g 0 0 0 0 0 4684.0 4292.0 397.0 6687.0 6687.0 7.0 32.0 6687.0 233.0 3205.0 0 0 0 0 0 t 0 0 0 0 0 2002.0 441.0 308.0 13.0 22.0 0.0 41.0 0.0 6687.0 1091.0 0 0 0 0 0

MA0807.1_shift10 (TBX5)
; oligos_8nt_mkv5_m35 versus MA0807.1 (TBX5); m=8/10; ncol2=8; w=8; offset=4; strand=D; shift=10; score=0.478774; ----------AGGTGTkA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 0 0 c 0 0 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 0 0 g 0 0 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 0 0 t 0 0 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0 0 0

MA0806.1_shift10 (TBX4)
; oligos_8nt_mkv5_m35 versus MA0806.1 (TBX4); m=9/10; ncol2=8; w=8; offset=4; strand=D; shift=10; score=0.472259; ----------AGGTGTgA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 0 0 c 0 0 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 0 0 g 0 0 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 0 0 t 0 0 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0 0 0

MA0080.5_shift0 (SPI1)
; oligos_8nt_mkv5_m35 versus MA0080.5 (SPI1); m=10/10; ncol2=20; w=12; offset=-6; strand=D; shift=0; score=0.443553; rrraaAGAGGAAGTGAaarw ; cor=; Ncor= a 42201.0 48240.0 54154.0 78831.0 81904.0 99739.0 15301.0 113087.0 5230.0 3323.0 129177.0 127888.0 11279.0 13931.0 11028.0 90925.0 60831.0 59460.0 39411.0 42838.0 c 22587.0 21262.0 20183.0 11424.0 12269.0 2914.0 10958.0 3425.0 568.0 954.0 1339.0 792.0 9931.0 3717.0 12697.0 11316.0 20113.0 16927.0 26246.0 24884.0 g 38405.0 34277.0 37341.0 25893.0 25580.0 13479.0 100825.0 12544.0 125703.0 127639.0 1407.0 1308.0 109802.0 7231.0 103485.0 20647.0 30577.0 29188.0 34829.0 28335.0 t 30010.0 29424.0 21525.0 17055.0 13450.0 17071.0 6119.0 4147.0 1702.0 1287.0 1280.0 3215.0 2191.0 108324.0 5993.0 10315.0 21682.0 27628.0 32717.0 37146.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv5_m35_shift6 (oligos_8nt_mkv5_m35oligos_8nt_mkv5_m35)				; oligos_8nt_mkv5_m35 (oligos_8nt_mkv5_m35oligos_8nt_mkv5_m35); m=0 (reference); ncol1=12; shift=6; ncol=20; ------krGGAGGTGAmr-- ; Alignment reference a 0 0 0 0 0 0 28 41 1 0 146 4 7 5 7 155 43 47 0 0 c 0 0 0 0 0 0 34 37 5 4 8 29 0 4 2 1 65 35 0 0 g 0 0 0 0 0 0 51 57 155 155 5 128 151 8 146 4 40 50 0 0 t 0 0 0 0 0 0 49 27 1 3 3 1 4 145 7 2 14 30 0 0
MA1652.1_shift5 (ZKSCAN5)				; oligos_8nt_mkv5_m35 versus MA1652.1 (ZKSCAN5); m=1/10; ncol2=14; w=12; offset=-1; strand=D; shift=5; score=0.803692; -----rgaGGArGTGAgrr- ; cor=; Ncor= a 0 0 0 0 0 870.0 822.0 1510.0 136.0 38.0 3199.0 1446.0 92.0 73.0 43.0 3199.0 375.0 1268.0 1169.0 0 c 0 0 0 0 0 636.0 704.0 315.0 30.0 27.0 62.0 27.0 37.0 86.0 24.0 41.0 370.0 504.0 569.0 0 g 0 0 0 0 0 1161.0 1197.0 801.0 3111.0 3236.0 47.0 1827.0 3149.0 76.0 3251.0 62.0 2034.0 1078.0 1052.0 0 t 0 0 0 0 0 660.0 604.0 701.0 50.0 26.0 19.0 27.0 49.0 3092.0 9.0 25.0 548.0 477.0 537.0 0
MA1522.1_rc_shift6 (MAZ_rc)				; oligos_8nt_mkv5_m35 versus MA1522.1_rc (MAZ_rc); m=2/10; ncol2=11; w=11; offset=0; strand=R; shift=6; score=0.672046; ------ggGGAGGGGss--- ; cor=; Ncor= a 0 0 0 0 0 0 3733.0 2814.0 0.0 4.0 14927.0 1.0 6.0 0.0 26.0 3013.0 3108.0 0 0 0 c 0 0 0 0 0 0 2539.0 1768.0 96.0 8.0 130.0 347.0 290.0 384.0 75.0 5163.0 4277.0 0 0 0 g 0 0 0 0 0 0 6775.0 9372.0 14944.0 14961.0 0.0 14676.0 14731.0 14630.0 14945.0 5068.0 5198.0 0 0 0 t 0 0 0 0 0 0 2016.0 1109.0 23.0 90.0 6.0 39.0 36.0 49.0 17.0 1819.0 2480.0 0 0 0
MA1648.1_rc_shift6 (TCF12(var.2)_rc)				; oligos_8nt_mkv5_m35 versus MA1648.1_rc (TCF12(var.2)_rc); m=3/10; ncol2=11; w=11; offset=0; strand=R; shift=6; score=0.649551; ------srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0
MA0522.3_rc_shift6 (TCF3_rc)				; oligos_8nt_mkv5_m35 versus MA0522.3_rc (TCF3_rc); m=4/10; ncol2=11; w=11; offset=0; strand=R; shift=6; score=0.647739; ------ssGCAGGTGbs--- ; cor=; Ncor= a 0 0 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 c 0 0 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 g 0 0 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 t 0 0 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0
MA1653.1_rc_shift5 (ZNF148_rc)				; oligos_8nt_mkv5_m35 versus MA1653.1_rc (ZNF148_rc); m=5/10; ncol2=12; w=11; offset=-1; strand=R; shift=5; score=0.600963; -----ggGGGAGGGGsr--- ; cor=; Ncor= a 0 0 0 0 0 1180.0 1190.0 1082.0 465.0 67.0 10040.0 66.0 136.0 200.0 113.0 2664.0 2966.0 0 0 0 c 0 0 0 0 0 2064.0 1924.0 392.0 460.0 112.0 1012.0 211.0 401.0 471.0 205.0 3215.0 2241.0 0 0 0 g 0 0 0 0 0 7114.0 7239.0 9283.0 9922.0 10954.0 14.0 10833.0 10526.0 10396.0 10799.0 4057.0 4593.0 0 0 0 t 0 0 0 0 0 841.0 846.0 442.0 352.0 66.0 133.0 89.0 136.0 132.0 82.0 1263.0 1399.0 0 0 0
MA0081.2_rc_shift2 (SPIB_rc)				; oligos_8nt_mkv5_m35 versus MA0081.2_rc (SPIB_rc); m=6/10; ncol2=16; w=12; offset=-4; strand=R; shift=2; score=0.565065; --raaaGAGGAAGTGara-- ; cor=; Ncor= a 0 0 10150.0 14333.0 16580.0 17264.0 3481.0 19719.0 1034.0 426.0 26297.0 26087.0 1445.0 1323.0 859.0 15129.0 9411.0 11760.0 0 0 c 0 0 4165.0 2409.0 2087.0 781.0 2316.0 1829.0 129.0 153.0 243.0 157.0 2516.0 669.0 1721.0 3193.0 4544.0 4026.0 0 0 g 0 0 8589.0 6029.0 5425.0 3922.0 20113.0 4517.0 25492.0 26145.0 200.0 236.0 22730.0 619.0 23971.0 6429.0 8293.0 5797.0 0 0 t 0 0 4026.0 4159.0 2838.0 4963.0 1020.0 865.0 275.0 206.0 190.0 450.0 239.0 24319.0 379.0 2179.0 4682.0 5347.0 0 0
MA0645.1_shift5 (ETV6)				; oligos_8nt_mkv5_m35 versus MA0645.1 (ETV6); m=7/10; ncol2=10; w=9; offset=-1; strand=D; shift=5; score=0.501194; -----msCGGAAGTr----- ; cor=; Ncor= a 0 0 0 0 0 9414.0 342.0 1476.0 7.0 21.0 6687.0 6687.0 768.0 184.0 2049.0 0 0 0 0 0 c 0 0 0 0 0 6562.0 2394.0 6379.0 0.0 0.0 0.0 13.0 52.0 834.0 342.0 0 0 0 0 0 g 0 0 0 0 0 4684.0 4292.0 397.0 6687.0 6687.0 7.0 32.0 6687.0 233.0 3205.0 0 0 0 0 0 t 0 0 0 0 0 2002.0 441.0 308.0 13.0 22.0 0.0 41.0 0.0 6687.0 1091.0 0 0 0 0 0
MA0807.1_shift10 (TBX5)				; oligos_8nt_mkv5_m35 versus MA0807.1 (TBX5); m=8/10; ncol2=8; w=8; offset=4; strand=D; shift=10; score=0.478774; ----------AGGTGTkA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 0 0 c 0 0 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 0 0 g 0 0 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 0 0 t 0 0 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0 0 0
MA0806.1_shift10 (TBX4)				; oligos_8nt_mkv5_m35 versus MA0806.1 (TBX4); m=9/10; ncol2=8; w=8; offset=4; strand=D; shift=10; score=0.472259; ----------AGGTGTgA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 0 0 c 0 0 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 0 0 g 0 0 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 0 0 t 0 0 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0 0 0
MA0080.5_shift0 (SPI1)				; oligos_8nt_mkv5_m35 versus MA0080.5 (SPI1); m=10/10; ncol2=20; w=12; offset=-6; strand=D; shift=0; score=0.443553; rrraaAGAGGAAGTGAaarw ; cor=; Ncor= a 42201.0 48240.0 54154.0 78831.0 81904.0 99739.0 15301.0 113087.0 5230.0 3323.0 129177.0 127888.0 11279.0 13931.0 11028.0 90925.0 60831.0 59460.0 39411.0 42838.0 c 22587.0 21262.0 20183.0 11424.0 12269.0 2914.0 10958.0 3425.0 568.0 954.0 1339.0 792.0 9931.0 3717.0 12697.0 11316.0 20113.0 16927.0 26246.0 24884.0 g 38405.0 34277.0 37341.0 25893.0 25580.0 13479.0 100825.0 12544.0 125703.0 127639.0 1407.0 1308.0 109802.0 7231.0 103485.0 20647.0 30577.0 29188.0 34829.0 28335.0 t 30010.0 29424.0 21525.0 17055.0 13450.0 17071.0 6119.0 4147.0 1702.0 1287.0 1280.0 3215.0 2191.0 108324.0 5993.0 10315.0 21682.0 27628.0 32717.0 37146.0