One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m37/peak-motifs_oligos_8nt_mkv5_m37.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m37/peak-motifs_oligos_8nt_mkv5_m37_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m37_shift3 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m37_shift3 (oligos_8nt_mkv5_m37oligos_8nt_mkv5_m37)
; oligos_8nt_mkv5_m37 (oligos_8nt_mkv5_m37oligos_8nt_mkv5_m37); m=0 (reference); ncol1=12; shift=3; ncol=15; ---ssTGACCACAgs ; Alignment reference a 0 0 0 52 49 0 25 225 5 3 218 2 218 42 52 c 0 0 0 66 83 11 4 1 223 210 3 223 1 42 65 g 0 0 0 58 69 2 190 3 1 7 4 1 11 107 73 t 0 0 0 54 29 217 11 1 1 10 5 4 0 39 40

MA1632.1_rc_shift3 (ATF2_rc)
; oligos_8nt_mkv5_m37 versus MA1632.1_rc (ATF2_rc); m=1/8; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.648529; ---raTGACvTCATy ; cor=; Ncor= a 0 0 0 18336.0 36321.0 509.0 909.0 57832.0 261.0 18166.0 975.0 2498.0 57651.0 1438.0 11021.0 c 0 0 0 11553.0 5971.0 768.0 649.0 283.0 56882.0 23207.0 262.0 55318.0 328.0 6229.0 18924.0 g 0 0 0 15785.0 14153.0 218.0 53464.0 316.0 886.0 16970.0 396.0 408.0 899.0 3145.0 10292.0 t 0 0 0 13720.0 2949.0 57899.0 4372.0 963.0 1365.0 1051.0 57761.0 1170.0 516.0 48582.0 19157.0

MA0002.2_rc_shift5 (RUNX1_rc)
; oligos_8nt_mkv5_m37 versus MA0002.2_rc (RUNX1_rc); m=2/8; ncol2=11; w=10; offset=2; strand=R; shift=5; score=0.630708; -----waaCCACAra ; cor=; Ncor= a 0 0 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 c 0 0 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 g 0 0 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 t 0 0 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0

MA0684.2_shift4 (RUNX3)
; oligos_8nt_mkv5_m37 versus MA0684.2 (RUNX3); m=3/8; ncol2=12; w=11; offset=1; strand=D; shift=4; score=0.607323; ----awAACCTCAaw ; cor=; Ncor= a 0 0 0 0 7768.0 9558.0 19136.0 26243.0 427.0 495.0 6357.0 611.0 26121.0 16137.0 8778.0 c 0 0 0 0 6083.0 5007.0 2662.0 315.0 26293.0 26208.0 419.0 26015.0 414.0 3077.0 5994.0 g 0 0 0 0 6685.0 3547.0 3500.0 431.0 198.0 385.0 1911.0 390.0 338.0 4696.0 5642.0 t 0 0 0 0 6841.0 9265.0 2079.0 388.0 459.0 289.0 18690.0 361.0 504.0 3467.0 6963.0

MA1535.1_rc_shift4 (NR2C1_rc)
; oligos_8nt_mkv5_m37 versus MA1535.1_rc (NR2C1_rc); m=4/8; ncol2=9; w=9; offset=1; strand=R; shift=4; score=0.543717; ----rTGACCyyk-- ; cor=; Ncor= a 0 0 0 0 2499.0 0.0 0.0 9622.0 0.0 297.0 55.0 1316.0 2225.0 0 0 c 0 0 0 0 2039.0 1716.0 321.0 271.0 9622.0 9622.0 4756.0 5587.0 1997.0 0 0 g 0 0 0 0 2786.0 0.0 9622.0 0.0 0.0 0.0 227.0 1225.0 2848.0 0 0 t 0 0 0 0 2298.0 9622.0 0.0 0.0 0.0 0.0 4866.0 4035.0 2552.0 0 0

MA0511.2_shift5 (RUNX2)
; oligos_8nt_mkv5_m37 versus MA0511.2 (RUNX2); m=5/8; ncol2=9; w=9; offset=2; strand=D; shift=5; score=0.537274; -----wAACCRCAa- ; cor=; Ncor= a 0 0 0 0 0 3872.0 6621.0 6621.0 0.0 0.0 1914.0 0.0 6621.0 4202.0 0 c 0 0 0 0 0 1092.0 556.0 325.0 6621.0 6621.0 36.0 6621.0 476.0 677.0 0 g 0 0 0 0 0 326.0 1215.0 0.0 0.0 0.0 4707.0 0.0 458.0 1134.0 0 t 0 0 0 0 0 2748.0 582.0 0.0 0.0 0.0 120.0 0.0 191.0 607.0 0

MA1536.1_rc_shift4 (NR2C2(var.2)_rc)
; oligos_8nt_mkv5_m37 versus MA1536.1_rc (NR2C2(var.2)_rc); m=6/8; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.484241; ----dYGACCyy--- ; cor=; Ncor= a 0 0 0 0 5122.0 0.0 4406.0 18628.0 4790.0 1341.0 0.0 2861.0 0 0 0 c 0 0 0 0 3684.0 6639.0 1643.0 1588.0 18628.0 18628.0 8395.0 6420.0 0 0 0 g 0 0 0 0 4757.0 0.0 18628.0 0.0 0.0 236.0 719.0 3111.0 0 0 0 t 0 0 0 0 5065.0 18628.0 0.0 0.0 0.0 0.0 10232.0 6236.0 0 0 0

MA0014.3_shift0 (PAX5)
; oligos_8nt_mkv5_m37 versus MA0014.3 (PAX5); m=7/8; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.431398; rrGCGTGACCmb--- ; cor=; Ncor= a 540.0 625.0 18.0 18.0 111.0 94.0 16.0 1243.0 32.0 69.0 377.0 263.0 0 0 0 c 179.0 148.0 151.0 1276.0 35.0 88.0 37.0 39.0 1305.0 1081.0 405.0 403.0 0 0 0 g 578.0 354.0 1231.0 34.0 1243.0 30.0 1355.0 70.0 57.0 118.0 312.0 359.0 0 0 0 t 115.0 285.0 12.0 84.0 23.0 1200.0 4.0 60.0 18.0 144.0 318.0 387.0 0 0 0

MA0067.1_rc_shift2 (Pax2_rc)
; oligos_8nt_mkv5_m37 versus MA0067.1_rc (Pax2_rc); m=8/8; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.407193; --vmrTGAcw----- ; cor=; Ncor= a 0 0 8.0 10.0 11.0 1.0 2.0 26.0 2.0 9.0 0 0 0 0 0 c 0 0 11.0 19.0 1.0 3.0 1.0 0.0 21.0 5.0 0 0 0 0 0 g 0 0 11.0 0.0 17.0 1.0 28.0 2.0 1.0 7.0 0 0 0 0 0 t 0 0 1.0 2.0 2.0 26.0 0.0 3.0 7.0 10.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv5_m37_shift3 (oligos_8nt_mkv5_m37oligos_8nt_mkv5_m37)				; oligos_8nt_mkv5_m37 (oligos_8nt_mkv5_m37oligos_8nt_mkv5_m37); m=0 (reference); ncol1=12; shift=3; ncol=15; ---ssTGACCACAgs ; Alignment reference a 0 0 0 52 49 0 25 225 5 3 218 2 218 42 52 c 0 0 0 66 83 11 4 1 223 210 3 223 1 42 65 g 0 0 0 58 69 2 190 3 1 7 4 1 11 107 73 t 0 0 0 54 29 217 11 1 1 10 5 4 0 39 40
MA1632.1_rc_shift3 (ATF2_rc)				; oligos_8nt_mkv5_m37 versus MA1632.1_rc (ATF2_rc); m=1/8; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.648529; ---raTGACvTCATy ; cor=; Ncor= a 0 0 0 18336.0 36321.0 509.0 909.0 57832.0 261.0 18166.0 975.0 2498.0 57651.0 1438.0 11021.0 c 0 0 0 11553.0 5971.0 768.0 649.0 283.0 56882.0 23207.0 262.0 55318.0 328.0 6229.0 18924.0 g 0 0 0 15785.0 14153.0 218.0 53464.0 316.0 886.0 16970.0 396.0 408.0 899.0 3145.0 10292.0 t 0 0 0 13720.0 2949.0 57899.0 4372.0 963.0 1365.0 1051.0 57761.0 1170.0 516.0 48582.0 19157.0
MA0002.2_rc_shift5 (RUNX1_rc)				; oligos_8nt_mkv5_m37 versus MA0002.2_rc (RUNX1_rc); m=2/8; ncol2=11; w=10; offset=2; strand=R; shift=5; score=0.630708; -----waaCCACAra ; cor=; Ncor= a 0 0 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 c 0 0 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 g 0 0 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 t 0 0 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0
MA0684.2_shift4 (RUNX3)				; oligos_8nt_mkv5_m37 versus MA0684.2 (RUNX3); m=3/8; ncol2=12; w=11; offset=1; strand=D; shift=4; score=0.607323; ----awAACCTCAaw ; cor=; Ncor= a 0 0 0 0 7768.0 9558.0 19136.0 26243.0 427.0 495.0 6357.0 611.0 26121.0 16137.0 8778.0 c 0 0 0 0 6083.0 5007.0 2662.0 315.0 26293.0 26208.0 419.0 26015.0 414.0 3077.0 5994.0 g 0 0 0 0 6685.0 3547.0 3500.0 431.0 198.0 385.0 1911.0 390.0 338.0 4696.0 5642.0 t 0 0 0 0 6841.0 9265.0 2079.0 388.0 459.0 289.0 18690.0 361.0 504.0 3467.0 6963.0
MA1535.1_rc_shift4 (NR2C1_rc)				; oligos_8nt_mkv5_m37 versus MA1535.1_rc (NR2C1_rc); m=4/8; ncol2=9; w=9; offset=1; strand=R; shift=4; score=0.543717; ----rTGACCyyk-- ; cor=; Ncor= a 0 0 0 0 2499.0 0.0 0.0 9622.0 0.0 297.0 55.0 1316.0 2225.0 0 0 c 0 0 0 0 2039.0 1716.0 321.0 271.0 9622.0 9622.0 4756.0 5587.0 1997.0 0 0 g 0 0 0 0 2786.0 0.0 9622.0 0.0 0.0 0.0 227.0 1225.0 2848.0 0 0 t 0 0 0 0 2298.0 9622.0 0.0 0.0 0.0 0.0 4866.0 4035.0 2552.0 0 0
MA0511.2_shift5 (RUNX2)				; oligos_8nt_mkv5_m37 versus MA0511.2 (RUNX2); m=5/8; ncol2=9; w=9; offset=2; strand=D; shift=5; score=0.537274; -----wAACCRCAa- ; cor=; Ncor= a 0 0 0 0 0 3872.0 6621.0 6621.0 0.0 0.0 1914.0 0.0 6621.0 4202.0 0 c 0 0 0 0 0 1092.0 556.0 325.0 6621.0 6621.0 36.0 6621.0 476.0 677.0 0 g 0 0 0 0 0 326.0 1215.0 0.0 0.0 0.0 4707.0 0.0 458.0 1134.0 0 t 0 0 0 0 0 2748.0 582.0 0.0 0.0 0.0 120.0 0.0 191.0 607.0 0
MA1536.1_rc_shift4 (NR2C2(var.2)_rc)				; oligos_8nt_mkv5_m37 versus MA1536.1_rc (NR2C2(var.2)_rc); m=6/8; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.484241; ----dYGACCyy--- ; cor=; Ncor= a 0 0 0 0 5122.0 0.0 4406.0 18628.0 4790.0 1341.0 0.0 2861.0 0 0 0 c 0 0 0 0 3684.0 6639.0 1643.0 1588.0 18628.0 18628.0 8395.0 6420.0 0 0 0 g 0 0 0 0 4757.0 0.0 18628.0 0.0 0.0 236.0 719.0 3111.0 0 0 0 t 0 0 0 0 5065.0 18628.0 0.0 0.0 0.0 0.0 10232.0 6236.0 0 0 0
MA0014.3_shift0 (PAX5)				; oligos_8nt_mkv5_m37 versus MA0014.3 (PAX5); m=7/8; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.431398; rrGCGTGACCmb--- ; cor=; Ncor= a 540.0 625.0 18.0 18.0 111.0 94.0 16.0 1243.0 32.0 69.0 377.0 263.0 0 0 0 c 179.0 148.0 151.0 1276.0 35.0 88.0 37.0 39.0 1305.0 1081.0 405.0 403.0 0 0 0 g 578.0 354.0 1231.0 34.0 1243.0 30.0 1355.0 70.0 57.0 118.0 312.0 359.0 0 0 0 t 115.0 285.0 12.0 84.0 23.0 1200.0 4.0 60.0 18.0 144.0 318.0 387.0 0 0 0
MA0067.1_rc_shift2 (Pax2_rc)				; oligos_8nt_mkv5_m37 versus MA0067.1_rc (Pax2_rc); m=8/8; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.407193; --vmrTGAcw----- ; cor=; Ncor= a 0 0 8.0 10.0 11.0 1.0 2.0 26.0 2.0 9.0 0 0 0 0 0 c 0 0 11.0 19.0 1.0 3.0 1.0 0.0 21.0 5.0 0 0 0 0 0 g 0 0 11.0 0.0 17.0 1.0 28.0 2.0 1.0 7.0 0 0 0 0 0 t 0 0 1.0 2.0 2.0 26.0 0.0 3.0 7.0 10.0 0 0 0 0 0