One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m38/peak-motifs_oligos_8nt_mkv5_m38.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m38/peak-motifs_oligos_8nt_mkv5_m38_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m38_shift2 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m38_shift2 (oligos_8nt_mkv5_m38oligos_8nt_mkv5_m38)
; oligos_8nt_mkv5_m38 (oligos_8nt_mkv5_m38oligos_8nt_mkv5_m38); m=0 (reference); ncol1=12; shift=2; ncol=16; --csCCACATCCcc-- ; Alignment reference a 0 0 32 32 5 3 142 5 126 0 7 3 34 37 0 0 c 0 0 44 39 141 141 3 130 4 2 133 140 45 44 0 0 g 0 0 36 52 2 3 2 5 14 1 3 5 35 37 0 0 t 0 0 37 26 1 2 2 9 5 146 6 1 35 31 0 0

MA0493.1_shift2 (Klf1)
; oligos_8nt_mkv5_m38 versus MA0493.1 (Klf1); m=1/9; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.680913; --rrCCACACCCw--- ; cor=; Ncor= a 0 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 c 0 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 g 0 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0

MA1511.1_shift3 (KLF10)
; oligos_8nt_mkv5_m38 versus MA1511.1 (KLF10); m=2/9; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.662451; ---gmCACrCCCmy-- ; cor=; Ncor= a 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 c 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 g 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 t 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0

MA0640.2_shift2 (ELF3)
; oligos_8nt_mkv5_m38 versus MA0640.2 (ELF3); m=3/9; ncol2=14; w=12; offset=0; strand=D; shift=2; score=0.605776; --yyccACTTCCTgbt ; cor=; Ncor= a 0 0 11697.0 9834.0 5684.0 6456.0 40643.0 554.0 1171.0 432.0 662.0 447.0 776.0 2377.0 9010.0 10659.0 c 0 0 12661.0 13181.0 24731.0 27973.0 2040.0 41950.0 1368.0 943.0 46481.0 47107.0 1315.0 9278.0 13291.0 9085.0 g 0 0 10255.0 11894.0 6930.0 4122.0 2615.0 1365.0 768.0 954.0 566.0 473.0 1989.0 28319.0 13945.0 6001.0 t 0 0 13889.0 13593.0 11157.0 9951.0 3204.0 4633.0 45195.0 46173.0 793.0 475.0 44422.0 8528.0 12256.0 22757.0

MA1107.2_shift1 (KLF9)
; oligos_8nt_mkv5_m38 versus MA1107.2 (KLF9); m=4/9; ncol2=16; w=12; offset=-1; strand=D; shift=1; score= 0.5431; -crgCCACACCCAChy ; cor=; Ncor= a 0 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 c 0 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 g 0 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 t 0 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0

MA0763.1_rc_shift5 (ETV3_rc)
; oligos_8nt_mkv5_m38 versus MA0763.1_rc (ETV3_rc); m=5/9; ncol2=10; w=9; offset=3; strand=R; shift=5; score=0.503513; -----cACTTCCGGT- ; cor=; Ncor= a 0 0 0 0 0 25.0 215.0 0.0 71.0 4.0 16.0 14.0 13.0 31.0 24.0 0 c 0 0 0 0 0 98.0 7.0 215.0 0.0 0.0 215.0 215.0 0.0 14.0 38.0 0 g 0 0 0 0 0 41.0 32.0 14.0 0.0 8.0 0.0 0.0 215.0 215.0 27.0 0 t 0 0 0 0 0 52.0 0.0 58.0 215.0 215.0 0.0 0.0 9.0 18.0 215.0 0

MA0645.1_rc_shift5 (ETV6_rc)
; oligos_8nt_mkv5_m38 versus MA0645.1_rc (ETV6_rc); m=6/9; ncol2=10; w=9; offset=3; strand=R; shift=5; score=0.496041; -----yACTTCCGsk- ; cor=; Ncor= a 0 0 0 0 0 1091.0 6687.0 0.0 41.0 0.0 22.0 13.0 308.0 441.0 2002.0 0 c 0 0 0 0 0 3205.0 233.0 6687.0 32.0 7.0 6687.0 6687.0 397.0 4292.0 4684.0 0 g 0 0 0 0 0 342.0 834.0 52.0 13.0 0.0 0.0 0.0 6379.0 2394.0 6562.0 0 t 0 0 0 0 0 2049.0 184.0 768.0 6687.0 6687.0 21.0 7.0 1476.0 342.0 9414.0 0

MA0686.1_rc_shift5 (SPDEF_rc)
; oligos_8nt_mkv5_m38 versus MA0686.1_rc (SPDEF_rc); m=7/9; ncol2=11; w=9; offset=3; strand=R; shift=5; score=0.487513; -----yAcATCCGGkT ; cor=; Ncor= a 0 0 0 0 0 810.0 4628.0 66.0 4628.0 2.0 8.0 0.0 1.0 0.0 77.0 912.0 c 0 0 0 0 0 1339.0 28.0 4628.0 11.0 6.0 4628.0 4628.0 1.0 92.0 536.0 176.0 g 0 0 0 0 0 568.0 1345.0 601.0 69.0 0.0 0.0 2.0 4628.0 4628.0 2737.0 101.0 t 0 0 0 0 0 1911.0 58.0 1566.0 532.0 4628.0 6.0 2.0 237.0 52.0 1890.0 4628.0

MA0130.1_shift2 (ZNF354C)
; oligos_8nt_mkv5_m38 versus MA0130.1 (ZNF354C); m=8/9; ncol2=6; w=6; offset=0; strand=D; shift=2; score=0.456884; --mTCCAC-------- ; cor=; Ncor= a 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 0 c 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 0 g 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 0 t 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0 0

MA1601.1_rc_shift0 (ZNF75D_rc)
; oligos_8nt_mkv5_m38 versus MA1601.1_rc (ZNF75D_rc); m=9/9; ncol2=10; w=8; offset=-2; strand=R; shift=0; score=0.416202; TyTCCCACay------ ; cor=; Ncor= a 512.0 396.0 18.0 28.0 124.0 5.0 6686.0 0.0 3519.0 1225.0 0 0 0 0 0 0 c 746.0 1693.0 15.0 6678.0 6545.0 6710.0 4.0 6757.0 1468.0 1850.0 0 0 0 0 0 0 g 256.0 576.0 20.0 29.0 44.0 18.0 59.0 0.0 715.0 1573.0 0 0 0 0 0 0 t 5245.0 4094.0 6706.0 24.0 46.0 26.0 10.0 2.0 1057.0 2111.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv5_m38_shift2 (oligos_8nt_mkv5_m38oligos_8nt_mkv5_m38)				; oligos_8nt_mkv5_m38 (oligos_8nt_mkv5_m38oligos_8nt_mkv5_m38); m=0 (reference); ncol1=12; shift=2; ncol=16; --csCCACATCCcc-- ; Alignment reference a 0 0 32 32 5 3 142 5 126 0 7 3 34 37 0 0 c 0 0 44 39 141 141 3 130 4 2 133 140 45 44 0 0 g 0 0 36 52 2 3 2 5 14 1 3 5 35 37 0 0 t 0 0 37 26 1 2 2 9 5 146 6 1 35 31 0 0
MA0493.1_shift2 (Klf1)				; oligos_8nt_mkv5_m38 versus MA0493.1 (Klf1); m=1/9; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.680913; --rrCCACACCCw--- ; cor=; Ncor= a 0 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 c 0 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 g 0 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0
MA1511.1_shift3 (KLF10)				; oligos_8nt_mkv5_m38 versus MA1511.1 (KLF10); m=2/9; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.662451; ---gmCACrCCCmy-- ; cor=; Ncor= a 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 c 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 g 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 t 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0
MA0640.2_shift2 (ELF3)				; oligos_8nt_mkv5_m38 versus MA0640.2 (ELF3); m=3/9; ncol2=14; w=12; offset=0; strand=D; shift=2; score=0.605776; --yyccACTTCCTgbt ; cor=; Ncor= a 0 0 11697.0 9834.0 5684.0 6456.0 40643.0 554.0 1171.0 432.0 662.0 447.0 776.0 2377.0 9010.0 10659.0 c 0 0 12661.0 13181.0 24731.0 27973.0 2040.0 41950.0 1368.0 943.0 46481.0 47107.0 1315.0 9278.0 13291.0 9085.0 g 0 0 10255.0 11894.0 6930.0 4122.0 2615.0 1365.0 768.0 954.0 566.0 473.0 1989.0 28319.0 13945.0 6001.0 t 0 0 13889.0 13593.0 11157.0 9951.0 3204.0 4633.0 45195.0 46173.0 793.0 475.0 44422.0 8528.0 12256.0 22757.0
MA1107.2_shift1 (KLF9)				; oligos_8nt_mkv5_m38 versus MA1107.2 (KLF9); m=4/9; ncol2=16; w=12; offset=-1; strand=D; shift=1; score= 0.5431; -crgCCACACCCAChy ; cor=; Ncor= a 0 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 c 0 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 g 0 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 t 0 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0
MA0763.1_rc_shift5 (ETV3_rc)				; oligos_8nt_mkv5_m38 versus MA0763.1_rc (ETV3_rc); m=5/9; ncol2=10; w=9; offset=3; strand=R; shift=5; score=0.503513; -----cACTTCCGGT- ; cor=; Ncor= a 0 0 0 0 0 25.0 215.0 0.0 71.0 4.0 16.0 14.0 13.0 31.0 24.0 0 c 0 0 0 0 0 98.0 7.0 215.0 0.0 0.0 215.0 215.0 0.0 14.0 38.0 0 g 0 0 0 0 0 41.0 32.0 14.0 0.0 8.0 0.0 0.0 215.0 215.0 27.0 0 t 0 0 0 0 0 52.0 0.0 58.0 215.0 215.0 0.0 0.0 9.0 18.0 215.0 0
MA0645.1_rc_shift5 (ETV6_rc)				; oligos_8nt_mkv5_m38 versus MA0645.1_rc (ETV6_rc); m=6/9; ncol2=10; w=9; offset=3; strand=R; shift=5; score=0.496041; -----yACTTCCGsk- ; cor=; Ncor= a 0 0 0 0 0 1091.0 6687.0 0.0 41.0 0.0 22.0 13.0 308.0 441.0 2002.0 0 c 0 0 0 0 0 3205.0 233.0 6687.0 32.0 7.0 6687.0 6687.0 397.0 4292.0 4684.0 0 g 0 0 0 0 0 342.0 834.0 52.0 13.0 0.0 0.0 0.0 6379.0 2394.0 6562.0 0 t 0 0 0 0 0 2049.0 184.0 768.0 6687.0 6687.0 21.0 7.0 1476.0 342.0 9414.0 0
MA0686.1_rc_shift5 (SPDEF_rc)				; oligos_8nt_mkv5_m38 versus MA0686.1_rc (SPDEF_rc); m=7/9; ncol2=11; w=9; offset=3; strand=R; shift=5; score=0.487513; -----yAcATCCGGkT ; cor=; Ncor= a 0 0 0 0 0 810.0 4628.0 66.0 4628.0 2.0 8.0 0.0 1.0 0.0 77.0 912.0 c 0 0 0 0 0 1339.0 28.0 4628.0 11.0 6.0 4628.0 4628.0 1.0 92.0 536.0 176.0 g 0 0 0 0 0 568.0 1345.0 601.0 69.0 0.0 0.0 2.0 4628.0 4628.0 2737.0 101.0 t 0 0 0 0 0 1911.0 58.0 1566.0 532.0 4628.0 6.0 2.0 237.0 52.0 1890.0 4628.0
MA0130.1_shift2 (ZNF354C)				; oligos_8nt_mkv5_m38 versus MA0130.1 (ZNF354C); m=8/9; ncol2=6; w=6; offset=0; strand=D; shift=2; score=0.456884; --mTCCAC-------- ; cor=; Ncor= a 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 0 c 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 0 g 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 0 t 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0 0
MA1601.1_rc_shift0 (ZNF75D_rc)				; oligos_8nt_mkv5_m38 versus MA1601.1_rc (ZNF75D_rc); m=9/9; ncol2=10; w=8; offset=-2; strand=R; shift=0; score=0.416202; TyTCCCACay------ ; cor=; Ncor= a 512.0 396.0 18.0 28.0 124.0 5.0 6686.0 0.0 3519.0 1225.0 0 0 0 0 0 0 c 746.0 1693.0 15.0 6678.0 6545.0 6710.0 4.0 6757.0 1468.0 1850.0 0 0 0 0 0 0 g 256.0 576.0 20.0 29.0 44.0 18.0 59.0 0.0 715.0 1573.0 0 0 0 0 0 0 t 5245.0 4094.0 6706.0 24.0 46.0 26.0 10.0 2.0 1057.0 2111.0 0 0 0 0 0 0