One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m39/peak-motifs_oligos_8nt_mkv5_m39.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m39/peak-motifs_oligos_8nt_mkv5_m39_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m39_shift3 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m39_shift3 (oligos_8nt_mkv5_m39oligos_8nt_mkv5_m39)
; oligos_8nt_mkv5_m39 (oligos_8nt_mkv5_m39oligos_8nt_mkv5_m39); m=0 (reference); ncol1=12; shift=3; ncol=18; ---syCTCCACCCss--- ; Alignment reference a 0 0 0 46 23 3 3 1 1 180 1 3 2 38 35 0 0 0 c 0 0 0 63 70 184 14 197 195 2 196 186 191 62 64 0 0 0 g 0 0 0 53 49 8 13 2 3 16 0 5 5 65 66 0 0 0 t 0 0 0 38 58 5 170 0 1 2 3 6 2 35 35 0 0 0

MA0039.4_shift3 (KLF4)
; oligos_8nt_mkv5_m39 versus MA0039.4 (KLF4); m=1/7; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.85778; ---ssCCCCACCChs--- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0 0

MA0528.2_rc_shift4 (ZNF263_rc)
; oligos_8nt_mkv5_m39 versus MA0528.2_rc (ZNF263_rc); m=2/7; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.660013; ----csTCCTCCCcsc-- ; cor=; Ncor= a 0 0 0 0 11103.0 6566.0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 8247.0 12535.0 9733.0 0 0 c 0 0 0 0 25115.0 24825.0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 28912.0 17883.0 20283.0 0 0 g 0 0 0 0 11689.0 15413.0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 6183.0 14909.0 13040.0 0 0 t 0 0 0 0 8436.0 9539.0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 13001.0 11016.0 13287.0 0 0

MA0599.1_shift4 (KLF5)
; oligos_8nt_mkv5_m39 versus MA0599.1 (KLF5); m=3/7; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.65579; ----gCCMCrCCCh---- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0

MA1600.1_shift0 (ZNF684)
; oligos_8nt_mkv5_m39 versus MA1600.1 (ZNF684); m=4/7; ncol2=18; w=12; offset=-3; strand=D; shift=0; score=0.469082; ryACAGTCCACCCCTTkr ; cor=; Ncor= a 524.0 82.0 1238.0 9.0 1184.0 60.0 9.0 13.0 40.0 1012.0 3.0 44.0 7.0 0.0 249.0 56.0 216.0 606.0 c 168.0 403.0 24.0 1253.0 11.0 216.0 14.0 1236.0 1221.0 9.0 1226.0 1253.0 1229.0 1263.0 129.0 59.0 168.0 201.0 g 362.0 314.0 68.0 9.0 110.0 1135.0 59.0 25.0 2.0 57.0 63.0 10.0 7.0 0.0 18.0 14.0 514.0 326.0 t 206.0 721.0 19.0 19.0 131.0 74.0 1259.0 10.0 67.0 220.0 61.0 6.0 92.0 3.0 1107.0 1224.0 619.0 127.0

MA0130.1_shift5 (ZNF354C)
; oligos_8nt_mkv5_m39 versus MA0130.1 (ZNF354C); m=5/7; ncol2=6; w=6; offset=2; strand=D; shift=5; score= 0.4597; -----mTCCAC------- ; cor=; Ncor= a 0 0 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 c 0 0 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 g 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 t 0 0 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0

MA1578.1_shift7 (VEZF1)
; oligos_8nt_mkv5_m39 versus MA1578.1 (VEZF1); m=6/7; ncol2=10; w=8; offset=4; strand=D; shift=7; score=0.427213; -------CCCCCCmytw- ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0

MA1653.1_shift0 (ZNF148)
; oligos_8nt_mkv5_m39 versus MA1653.1 (ZNF148); m=7/7; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.420962; ysCCCCTCCCcc------ ; cor=; Ncor= a 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 0 0 0 0 c 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 0 0 0 0 g 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 0 0 0 0 t 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv5_m39_shift3 (oligos_8nt_mkv5_m39oligos_8nt_mkv5_m39)				; oligos_8nt_mkv5_m39 (oligos_8nt_mkv5_m39oligos_8nt_mkv5_m39); m=0 (reference); ncol1=12; shift=3; ncol=18; ---syCTCCACCCss--- ; Alignment reference a 0 0 0 46 23 3 3 1 1 180 1 3 2 38 35 0 0 0 c 0 0 0 63 70 184 14 197 195 2 196 186 191 62 64 0 0 0 g 0 0 0 53 49 8 13 2 3 16 0 5 5 65 66 0 0 0 t 0 0 0 38 58 5 170 0 1 2 3 6 2 35 35 0 0 0
MA0039.4_shift3 (KLF4)				; oligos_8nt_mkv5_m39 versus MA0039.4 (KLF4); m=1/7; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.85778; ---ssCCCCACCChs--- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0 0
MA0528.2_rc_shift4 (ZNF263_rc)				; oligos_8nt_mkv5_m39 versus MA0528.2_rc (ZNF263_rc); m=2/7; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.660013; ----csTCCTCCCcsc-- ; cor=; Ncor= a 0 0 0 0 11103.0 6566.0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 8247.0 12535.0 9733.0 0 0 c 0 0 0 0 25115.0 24825.0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 28912.0 17883.0 20283.0 0 0 g 0 0 0 0 11689.0 15413.0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 6183.0 14909.0 13040.0 0 0 t 0 0 0 0 8436.0 9539.0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 13001.0 11016.0 13287.0 0 0
MA0599.1_shift4 (KLF5)				; oligos_8nt_mkv5_m39 versus MA0599.1 (KLF5); m=3/7; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.65579; ----gCCMCrCCCh---- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0
MA1600.1_shift0 (ZNF684)				; oligos_8nt_mkv5_m39 versus MA1600.1 (ZNF684); m=4/7; ncol2=18; w=12; offset=-3; strand=D; shift=0; score=0.469082; ryACAGTCCACCCCTTkr ; cor=; Ncor= a 524.0 82.0 1238.0 9.0 1184.0 60.0 9.0 13.0 40.0 1012.0 3.0 44.0 7.0 0.0 249.0 56.0 216.0 606.0 c 168.0 403.0 24.0 1253.0 11.0 216.0 14.0 1236.0 1221.0 9.0 1226.0 1253.0 1229.0 1263.0 129.0 59.0 168.0 201.0 g 362.0 314.0 68.0 9.0 110.0 1135.0 59.0 25.0 2.0 57.0 63.0 10.0 7.0 0.0 18.0 14.0 514.0 326.0 t 206.0 721.0 19.0 19.0 131.0 74.0 1259.0 10.0 67.0 220.0 61.0 6.0 92.0 3.0 1107.0 1224.0 619.0 127.0
MA0130.1_shift5 (ZNF354C)				; oligos_8nt_mkv5_m39 versus MA0130.1 (ZNF354C); m=5/7; ncol2=6; w=6; offset=2; strand=D; shift=5; score= 0.4597; -----mTCCAC------- ; cor=; Ncor= a 0 0 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 c 0 0 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 g 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 t 0 0 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0
MA1578.1_shift7 (VEZF1)				; oligos_8nt_mkv5_m39 versus MA1578.1 (VEZF1); m=6/7; ncol2=10; w=8; offset=4; strand=D; shift=7; score=0.427213; -------CCCCCCmytw- ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0
MA1653.1_shift0 (ZNF148)				; oligos_8nt_mkv5_m39 versus MA1653.1 (ZNF148); m=7/7; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.420962; ysCCCCTCCCcc------ ; cor=; Ncor= a 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 0 0 0 0 c 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 0 0 0 0 g 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 0 0 0 0 t 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0 0 0 0 0