Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m40/peak-motifs_oligos_8nt_mkv5_m40_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m40/peak-motifs_oligos_8nt_mkv5_m40.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m40/peak-motifs_oligos_8nt_mkv5_m40_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m40/peak-motifs_oligos_8nt_mkv5_m40.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m40/peak-motifs_oligos_8nt_mkv5_m40_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m40/peak-motifs_oligos_8nt_mkv5_m40_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m40/peak-motifs_oligos_8nt_mkv5_m40_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m40/peak-motifs_oligos_8nt_mkv5_m40_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m40/peak-motifs_oligos_8nt_mkv5_m40_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m40/peak-motifs_oligos_8nt_mkv5_m40_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m40/peak-motifs_oligos_8nt_mkv5_m40.tf
		file1	1	12	198
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv5_m40 MA1642.1 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 NEUROG2(var.2) 0.867 0.800 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_8nt_mkv5_m40 MA1638.1 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 HAND2 0.885 0.737 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv5_m40 MA1123.2 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 TWIST1 0.779 0.719 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_8nt_mkv5_m40 MA1631.1 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 ASCL1(var.2) 0.736 0.679 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv5_m40 MA1648.1 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 TCF12(var.2) 0.739 0.677 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_8nt_mkv5_m40 MA0522.3 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 TCF3 0.735 0.674 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_8nt_mkv5_m40 MA1109.1 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 NEUROD1 0.838 0.659 12 13 11 14 0.7857 0.9167 0.8462 D 1
oligos_8nt_mkv5_m40 MA0830.2 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 TCF4 0.703 0.649 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv5_m40 MA1618.1 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 Ptf1a 0.820 0.644 12 13 11 14 0.7857 0.9167 0.8462 D 1
oligos_8nt_mkv5_m40 MA0816.1 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 Ascl2 0.757 0.631 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv5_m40 MA1472.1 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 BHLHA15(var.2) 0.757 0.630 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv5_m40 MA1100.2 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 ASCL1 0.750 0.625 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv5_m40 MA1468.1 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 ATOH7 0.741 0.617 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv5_m40 MA0461.2 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 Atoh1 0.739 0.616 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv5_m40 MA0818.1 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 BHLHE22 0.732 0.610 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv5_m40 MA0500.2 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 MYOG 0.714 0.604 12 12 11 13 0.8462 0.9167 0.9167 R 1
oligos_8nt_mkv5_m40 MA0817.1 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 BHLHE23 0.712 0.602 12 12 11 13 0.8462 0.9167 0.9167 D 1
oligos_8nt_mkv5_m40 MA0048.2 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 NHLH1 0.712 0.593 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv5_m40 MA1570.1 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 TFAP4(var.2) 0.711 0.593 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv5_m40 MA0826.1 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 OLIG1 0.710 0.592 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv5_m40 MA0827.1 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 OLIG3 0.703 0.586 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv5_m40 MA0091.1 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 TAL1::TCF3 0.799 0.571 12 12 10 14 0.7143 0.8333 0.8333 R 2
oligos_8nt_mkv5_m40 MA0521.1 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 Tcf12 0.715 0.550 12 11 10 13 0.7692 0.8333 0.9091 D 2
oligos_8nt_mkv5_m40 MA1593.1 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 ZNF317 0.731 0.522 12 12 10 14 0.7143 0.8333 0.8333 D -2
oligos_8nt_mkv5_m40 MA0607.1 oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40 Bhlha15 0.774 0.516 12 8 8 12 0.6667 0.6667 1.0000 R 3 
 Host name	pedagogix
 Job started	2020-04-13.234420
 Job done	2020-04-13.234441
 Seconds	3.1
	user	3.1
	system	0.36
	cuser	17.11
;	csystem	1.29