One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m40/peak-motifs_oligos_8nt_mkv5_m40.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m40/peak-motifs_oligos_8nt_mkv5_m40_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m40_shift2 ; 26 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_8nt_mkv5_m40_shift2 (oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40)     
; oligos_8nt_mkv5_m40 (oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40); m=0 (reference); ncol1=12; shift=2; ncol=14; --rsAGCAGATGgc
; Alignment reference
a	0	0	54	40	186	19	4	192	6	195	1	7	38	39
c	0	0	45	51	4	4	177	2	2	0	5	2	47	66
g	0	0	63	60	7	171	7	4	181	2	2	187	71	47
t	0	0	36	47	1	4	10	0	9	1	190	2	42	46
MA1642.1_shift2 (NEUROG2(var.2)) 
; oligos_8nt_mkv5_m40 versus MA1642.1 (NEUROG2(var.2)); m=1/25; ncol2=13; w=12; offset=0; strand=D; shift=2; score=0.800035; --rrraCAGATGGy
; cor=; Ncor=
a	0	0	8690.0	9047.0	12089.0	16448.0	278.0	33720.0	400.0	32746.0	649.0	280.0	1523.0	6665.0
c	0	0	7353.0	6843.0	6467.0	8154.0	33559.0	211.0	793.0	952.0	904.0	205.0	2966.0	10441.0
g	0	0	10813.0	10123.0	11114.0	8039.0	317.0	301.0	30392.0	418.0	323.0	33422.0	24998.0	7581.0
t	0	0	7535.0	8378.0	4721.0	1750.0	237.0	159.0	2806.0	275.0	32515.0	484.0	4904.0	9704.0
MA1638.1_shift4 (HAND2) 
; oligos_8nt_mkv5_m40 versus MA1638.1 (HAND2); m=2/25; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.737329; ----amCAGATGby
; cor=; Ncor=
a	0	0	0	0	10136.0	8836.0	19.0	29222.0	12.0	30192.0	14.0	234.0	5217.0	6165.0
c	0	0	0	0	5564.0	11298.0	30062.0	410.0	42.0	30.0	2276.0	149.0	7690.0	10227.0
g	0	0	0	0	7463.0	6994.0	132.0	647.0	30144.0	38.0	31.0	29851.0	8878.0	6108.0
t	0	0	0	0	7120.0	3155.0	70.0	4.0	85.0	23.0	27962.0	49.0	8498.0	7783.0
MA1123.2_shift2 (TWIST1) 
; oligos_8nt_mkv5_m40 versus MA1123.2 (TWIST1); m=3/25; ncol2=13; w=12; offset=0; strand=D; shift=2; score=0.719376; --awwCCAGATGtb
; cor=; Ncor=
a	0	0	8329.0	7822.0	7536.0	3733.0	377.0	26713.0	440.0	24524.0	357.0	380.0	1801.0	4070.0
c	0	0	5761.0	5530.0	4597.0	20412.0	26665.0	136.0	1320.0	1687.0	456.0	396.0	2919.0	7402.0
g	0	0	6485.0	5722.0	5772.0	2336.0	117.0	210.0	24166.0	908.0	288.0	25975.0	4069.0	7273.0
t	0	0	6758.0	8259.0	9428.0	852.0	174.0	274.0	1407.0	214.0	26232.0	582.0	18544.0	8588.0
MA1631.1_rc_shift2 (ASCL1(var.2)_rc) 
; oligos_8nt_mkv5_m40 versus MA1631.1_rc (ASCL1(var.2)_rc); m=4/25; ncol2=13; w=12; offset=0; strand=R; shift=2; score=0.679179; --gsrGCAGGTGch
; cor=; Ncor=
a	0	0	8032.0	7779.0	9017.0	2394.0	249.0	32756.0	151.0	815.0	618.0	289.0	3290.0	8805.0
c	0	0	8356.0	8939.0	2966.0	2719.0	33411.0	492.0	607.0	3209.0	860.0	321.0	18576.0	8601.0
g	0	0	11996.0	10555.0	17883.0	28844.0	445.0	740.0	33402.0	30169.0	563.0	33562.0	6654.0	7998.0
t	0	0	5972.0	7083.0	4490.0	399.0	251.0	368.0	196.0	163.0	32315.0	184.0	5836.0	8952.0
MA1648.1_rc_shift3 (TCF12(var.2)_rc) 
; oligos_8nt_mkv5_m40 versus MA1648.1_rc (TCF12(var.2)_rc); m=5/25; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.677482; ---srGCAGGTGss
; cor=; Ncor=
a	0	0	0	12248.0	16113.0	3412.0	1047.0	53985.0	662.0	1754.0	1733.0	1887.0	10887.0	12473.0
c	0	0	0	20060.0	14293.0	2314.0	55922.0	2625.0	3536.0	3780.0	5607.0	1186.0	18560.0	16996.0
g	0	0	0	18154.0	17603.0	55061.0	2088.0	3886.0	55765.0	55598.0	2007.0	57848.0	17594.0	19393.0
t	0	0	0	11414.0	13867.0	1089.0	2819.0	1380.0	1913.0	744.0	52529.0	955.0	14835.0	13014.0
MA0522.3_rc_shift3 (TCF3_rc) 
; oligos_8nt_mkv5_m40 versus MA0522.3_rc (TCF3_rc); m=6/25; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.673692; ---ssGCAGGTGbs
; cor=; Ncor=
a	0	0	0	6432.0	7233.0	1237.0	492.0	27539.0	283.0	950.0	375.0	705.0	4528.0	6240.0
c	0	0	0	9222.0	8025.0	987.0	28642.0	1339.0	2652.0	1362.0	1574.0	708.0	9432.0	8539.0
g	0	0	0	10122.0	8727.0	28742.0	1038.0	2003.0	27199.0	28640.0	396.0	29379.0	9269.0	10212.0
t	0	0	0	5485.0	7276.0	295.0	1089.0	380.0	1127.0	309.0	28916.0	469.0	8032.0	6270.0
MA1109.1_shift3 (NEUROD1) 
; oligos_8nt_mkv5_m40 versus MA1109.1 (NEUROD1); m=7/25; ncol2=13; w=11; offset=1; strand=D; shift=3; score=0.658595; ---graCAGATGGy
; cor=; Ncor=
a	0	0	0	561.0	755.0	1289.0	17.0	2241.0	16.0	2034.0	55.0	13.0	59.0	373.0
c	0	0	0	429.0	323.0	452.0	2240.0	7.0	24.0	150.0	51.0	7.0	93.0	911.0
g	0	0	0	726.0	906.0	494.0	13.0	16.0	2152.0	77.0	19.0	2231.0	1962.0	418.0
t	0	0	0	566.0	298.0	47.0	12.0	18.0	90.0	21.0	2157.0	31.0	168.0	580.0
MA0830.2_rc_shift2 (TCF4_rc) 
; oligos_8nt_mkv5_m40 versus MA0830.2_rc (TCF4_rc); m=8/25; ncol2=13; w=12; offset=0; strand=R; shift=2; score=0.649125; --ssggCAGGTGcc
; cor=; Ncor=
a	0	0	6827.0	6430.0	6126.0	3555.0	242.0	27398.0	188.0	751.0	512.0	215.0	1737.0	7059.0
c	0	0	7662.0	7964.0	4933.0	5281.0	28432.0	679.0	1197.0	1733.0	1295.0	321.0	18498.0	8618.0
g	0	0	9843.0	8658.0	12872.0	18935.0	540.0	1016.0	27724.0	26765.0	635.0	28686.0	5062.0	6754.0
t	0	0	5133.0	6413.0	5534.0	1694.0	251.0	372.0	356.0	216.0	27023.0	243.0	4168.0	7034.0
MA1618.1_shift3 (Ptf1a) 
; oligos_8nt_mkv5_m40 versus MA1618.1 (Ptf1a); m=9/25; ncol2=13; w=11; offset=1; strand=D; shift=3; score=0.644134; ---dmaCAGATGtt
; cor=; Ncor=
a	0	0	0	4092.0	4476.0	8554.0	133.0	14064.0	250.0	12132.0	126.0	241.0	965.0	1511.0
c	0	0	0	2989.0	3662.0	2747.0	14006.0	118.0	466.0	1724.0	224.0	122.0	2058.0	2341.0
g	0	0	0	3661.0	3568.0	2414.0	130.0	153.0	13072.0	437.0	118.0	13868.0	2854.0	2295.0
t	0	0	0	3699.0	2735.0	726.0	172.0	106.0	653.0	148.0	13973.0	210.0	8564.0	8294.0
MA0816.1_rc_shift4 (Ascl2_rc) 
; oligos_8nt_mkv5_m40 versus MA0816.1_rc (Ascl2_rc); m=10/25; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.63084; ----rrCAGCTGyt
; cor=; Ncor=
a	0	0	0	0	199.0	94.0	2.0	300.0	1.0	18.0	15.0	1.0	1.0	16.0
c	0	0	0	0	28.0	15.0	300.0	0.0	2.0	300.0	0.0	0.0	172.0	63.0
g	0	0	0	0	101.0	206.0	1.0	0.0	300.0	23.0	0.0	300.0	41.0	36.0
t	0	0	0	0	34.0	6.0	0.0	4.0	3.0	7.0	300.0	3.0	128.0	237.0
MA1472.1_shift4 (BHLHA15(var.2)) 
; oligos_8nt_mkv5_m40 versus MA1472.1 (BHLHA15(var.2)); m=11/25; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.630444; ----avCAGCTGyy
; cor=; Ncor=
a	0	0	0	0	697.0	897.0	47.0	1504.0	11.0	445.0	54.0	0.0	54.0	202.0
c	0	0	0	0	281.0	607.0	1504.0	33.0	30.0	1504.0	4.0	0.0	610.0	410.0
g	0	0	0	0	357.0	591.0	6.0	33.0	1504.0	72.0	0.0	1504.0	489.0	316.0
t	0	0	0	0	170.0	81.0	33.0	137.0	467.0	11.0	1504.0	0.0	1015.0	577.0
MA1100.2_shift4 (ASCL1) 
; oligos_8nt_mkv5_m40 versus MA1100.2 (ASCL1); m=12/25; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.624681; ----rrCAGCTGcy
; cor=; Ncor=
a	0	0	0	0	1267.0	1334.0	0.0	4413.0	107.0	729.0	118.0	52.0	177.0	843.0
c	0	0	0	0	926.0	521.0	4413.0	157.0	1288.0	4413.0	24.0	0.0	3065.0	1487.0
g	0	0	0	0	1495.0	3079.0	0.0	60.0	4413.0	1320.0	121.0	4413.0	814.0	889.0
t	0	0	0	0	726.0	354.0	14.0	218.0	625.0	20.0	4413.0	29.0	1349.0	1194.0
MA1468.1_shift4 (ATOH7) 
; oligos_8nt_mkv5_m40 versus MA1468.1 (ATOH7); m=13/25; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.617315; ----AmCATATGky
; cor=; Ncor=
a	0	0	0	0	712.0	302.0	0.0	712.0	15.0	712.0	0.0	0.0	5.0	17.0
c	0	0	0	0	97.0	211.0	712.0	0.0	106.0	180.0	25.0	0.0	155.0	400.0
g	0	0	0	0	142.0	154.0	0.0	102.0	59.0	78.0	25.0	712.0	261.0	2.0
t	0	0	0	0	62.0	45.0	0.0	58.0	712.0	0.0	712.0	0.0	291.0	312.0
MA0461.2_shift4 (Atoh1) 
; oligos_8nt_mkv5_m40 versus MA0461.2 (Atoh1); m=14/25; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.615534; ----rmCATATGky
; cor=; Ncor=
a	0	0	0	0	655.0	523.0	42.0	1027.0	17.0	1027.0	22.0	2.0	34.0	128.0
c	0	0	0	0	108.0	334.0	1027.0	20.0	10.0	74.0	4.0	1.0	234.0	494.0
g	0	0	0	0	372.0	149.0	8.0	34.0	136.0	0.0	5.0	1027.0	376.0	126.0
t	0	0	0	0	59.0	21.0	0.0	0.0	1027.0	0.0	1027.0	31.0	384.0	533.0
MA0818.1_rc_shift4 (BHLHE22_rc) 
; oligos_8nt_mkv5_m40 versus MA0818.1_rc (BHLHE22_rc); m=15/25; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.610245; ----rrCATATGkT
; cor=; Ncor=
a	0	0	0	0	520.0	201.0	4.0	520.0	2.0	520.0	8.0	0.0	4.0	21.0
c	0	0	0	0	21.0	123.0	520.0	0.0	2.0	0.0	24.0	0.0	99.0	172.0
g	0	0	0	0	254.0	193.0	2.0	48.0	4.0	2.0	6.0	520.0	229.0	26.0
t	0	0	0	0	36.0	4.0	0.0	11.0	520.0	0.0	520.0	6.0	189.0	520.0
MA0500.2_rc_shift3 (MYOG_rc) 
; oligos_8nt_mkv5_m40 versus MA0500.2_rc (MYOG_rc); m=16/25; ncol2=12; w=11; offset=1; strand=R; shift=3; score=0.603744; ---sarCAGCTGyt
; cor=; Ncor=
a	0	0	0	5310.0	8475.0	7192.0	88.0	21777.0	95.0	169.0	163.0	182.0	1678.0	4692.0
c	0	0	0	6369.0	3718.0	2706.0	21985.0	179.0	131.0	21963.0	236.0	101.0	10790.0	5483.0
g	0	0	0	5660.0	5497.0	10792.0	102.0	238.0	21964.0	130.0	176.0	21988.0	2730.0	3754.0
t	0	0	0	5018.0	4667.0	1667.0	182.0	163.0	167.0	95.0	21782.0	86.0	7159.0	8428.0
MA0817.1_shift3 (BHLHE23) 
; oligos_8nt_mkv5_m40 versus MA0817.1 (BHLHE23); m=17/25; ncol2=12; w=11; offset=1; strand=D; shift=3; score=0.602122; ---aAmCATATGkT
; cor=; Ncor=
a	0	0	0	2550.0	5005.0	2779.0	21.0	5005.0	0.0	5005.0	47.0	0.0	13.0	243.0
c	0	0	0	686.0	55.0	1286.0	5005.0	0.0	4.0	5.0	115.0	4.0	1203.0	1468.0
g	0	0	0	858.0	890.0	932.0	0.0	67.0	1.0	3.0	5.0	5005.0	1771.0	92.0
t	0	0	0	912.0	44.0	8.0	0.0	17.0	5005.0	0.0	5005.0	7.0	2018.0	5005.0
MA0048.2_rc_shift4 (NHLH1_rc) 
; oligos_8nt_mkv5_m40 versus MA0048.2_rc (NHLH1_rc); m=18/25; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.593497; ----mGCAGCTGCg
; cor=; Ncor=
a	0	0	0	0	1489.0	350.0	1.0	2166.0	0.0	114.0	0.0	0.0	142.0	111.0
c	0	0	0	0	2166.0	102.0	2166.0	4.0	124.0	2166.0	1.0	0.0	2166.0	181.0
g	0	0	0	0	736.0	2166.0	4.0	4.0	2166.0	301.0	3.0	2166.0	179.0	2166.0
t	0	0	0	0	308.0	296.0	2.0	0.0	96.0	0.0	2166.0	3.0	461.0	788.0
MA1570.1_rc_shift4 (TFAP4(var.2)_rc) 
; oligos_8nt_mkv5_m40 versus MA1570.1_rc (TFAP4(var.2)_rc); m=19/25; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.59271; ----amCAyrTGdt
; cor=; Ncor=
a	0	0	0	0	479.0	206.0	0.0	479.0	0.0	479.0	0.0	0.0	129.0	39.0
c	0	0	0	0	110.0	156.0	479.0	0.0	287.0	161.0	14.0	0.0	0.0	197.0
g	0	0	0	0	210.0	14.0	3.0	0.0	149.0	220.0	0.0	479.0	144.0	130.0
t	0	0	0	0	60.0	103.0	0.0	0.0	479.0	0.0	479.0	0.0	217.0	479.0
MA0826.1_shift4 (OLIG1) 
; oligos_8nt_mkv5_m40 versus MA0826.1 (OLIG1); m=20/25; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.591536; ----AmCATATGkT
; cor=; Ncor=
a	0	0	0	0	11391.0	5931.0	52.0	11391.0	12.0	11391.0	195.0	0.0	12.0	490.0
c	0	0	0	0	240.0	4142.0	11391.0	1.0	15.0	80.0	175.0	0.0	2082.0	2812.0
g	0	0	0	0	1526.0	1321.0	0.0	139.0	113.0	17.0	0.0	11391.0	4568.0	257.0
t	0	0	0	0	205.0	0.0	0.0	80.0	11391.0	10.0	11391.0	74.0	4730.0	11391.0
MA0827.1_rc_shift4 (OLIG3_rc) 
; oligos_8nt_mkv5_m40 versus MA0827.1_rc (OLIG3_rc); m=21/25; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.585512; ----rvCATATGkT
; cor=; Ncor=
a	0	0	0	0	1915.0	1010.0	275.0	1915.0	0.0	1915.0	22.0	3.0	6.0	132.0
c	0	0	0	0	176.0	904.0	1915.0	2.0	11.0	72.0	99.0	0.0	208.0	427.0
g	0	0	0	0	964.0	662.0	4.0	224.0	103.0	26.0	10.0	1915.0	1115.0	204.0
t	0	0	0	0	265.0	28.0	4.0	56.0	1915.0	0.0	1915.0	222.0	800.0	1915.0
MA0091.1_rc_shift4 (TAL1::TCF3_rc) 
; oligos_8nt_mkv5_m40 versus MA0091.1_rc (TAL1::TCF3_rc); m=22/25; ncol2=12; w=10; offset=2; strand=R; shift=4; score=0.571046; ----AmCAKMTGkT
; cor=; Ncor=
a	0	0	0	0	34.0	21.0	1.0	44.0	0.0	32.0	0.0	0.0	0.0	2.0
c	0	0	0	0	2.0	20.0	43.0	0.0	0.0	11.0	0.0	1.0	0.0	3.0
g	0	0	0	0	4.0	3.0	0.0	0.0	32.0	1.0	0.0	43.0	24.0	0.0
t	0	0	0	0	4.0	0.0	0.0	0.0	12.0	0.0	44.0	0.0	20.0	39.0
MA0521.1_shift4 (Tcf12) 
; oligos_8nt_mkv5_m40 versus MA0521.1 (Tcf12); m=23/25; ncol2=11; w=10; offset=2; strand=D; shift=4; score=0.549899; ----rRCAGCTGsw
; cor=; Ncor=
a	0	0	0	0	6170.0	8820.0	0.0	12895.0	8.0	184.0	0.0	0.0	1875.0	3912.0
c	0	0	0	0	1585.0	124.0	12895.0	0.0	0.0	10822.0	0.0	0.0	5527.0	2416.0
g	0	0	0	0	5123.0	3951.0	0.0	0.0	12887.0	1889.0	0.0	12895.0	3811.0	2925.0
t	0	0	0	0	17.0	0.0	0.0	0.0	0.0	0.0	12895.0	0.0	1682.0	3642.0
MA1593.1_shift0 (ZNF317) 
; oligos_8nt_mkv5_m40 versus MA1593.1 (ZNF317); m=24/25; ncol2=12; w=10; offset=-2; strand=D; shift=0; score=0.521807; wrACAGCAGAyw--
; cor=; Ncor=
a	2959.0	4274.0	9381.0	281.0	10344.0	691.0	395.0	9323.0	284.0	10825.0	2072.0	3852.0	0	0
c	1201.0	2141.0	357.0	10821.0	85.0	192.0	10608.0	250.0	186.0	208.0	4399.0	1709.0	0	0
g	1985.0	3670.0	480.0	183.0	317.0	10374.0	223.0	289.0	10730.0	206.0	1334.0	1481.0	0	0
t	5318.0	1378.0	1245.0	178.0	717.0	206.0	237.0	1601.0	263.0	224.0	3658.0	4421.0	0	0
MA0607.1_rc_shift5 (Bhlha15_rc) 
; oligos_8nt_mkv5_m40 versus MA0607.1_rc (Bhlha15_rc); m=25/25; ncol2=8; w=8; offset=3; strand=R; shift=5; score=0.515875; -----aCATATGs-
; cor=; Ncor=
a	0	0	0	0	0	614.0	0.0	999.0	0.0	799.0	0.0	0.0	1.0	0
c	0	0	0	0	0	154.0	999.0	0.0	0.0	200.0	0.0	0.0	286.0	0
g	0	0	0	0	0	231.0	0.0	0.0	200.0	0.0	0.0	999.0	571.0	0
t	0	0	0	0	0	1.0	0.0	0.0	799.0	0.0	999.0	0.0	143.0	0