Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m41/peak-motifs_oligos_8nt_mkv5_m41_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m41/peak-motifs_oligos_8nt_mkv5_m41.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m41/peak-motifs_oligos_8nt_mkv5_m41_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m41/peak-motifs_oligos_8nt_mkv5_m41.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m41/peak-motifs_oligos_8nt_mkv5_m41_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m41/peak-motifs_oligos_8nt_mkv5_m41_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m41/peak-motifs_oligos_8nt_mkv5_m41_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m41/peak-motifs_oligos_8nt_mkv5_m41_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m41/peak-motifs_oligos_8nt_mkv5_m41_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m41/peak-motifs_oligos_8nt_mkv5_m41_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m41/peak-motifs_oligos_8nt_mkv5_m41.tf
		file1	1	12	222
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv5_m41 MA0499.2 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 MYOD1 0.809 0.747 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv5_m41 MA0667.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 MYF6 0.882 0.735 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv5_m41 MA0091.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 TAL1::TCF3 0.715 0.715 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv5_m41 MA0745.2 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 SNAI2 0.767 0.708 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv5_m41 MA0665.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 MSC 0.847 0.706 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv5_m41 MA0832.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 Tcf21 0.820 0.703 12 14 12 14 0.8571 1.0000 0.8571 D 0
oligos_8nt_mkv5_m41 MA1105.2 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 GRHL2 0.702 0.702 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv5_m41 MA1467.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 ATOH1(var.2) 0.835 0.696 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv5_m41 MA0100.3 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 MYB 0.830 0.692 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv5_m41 MA1642.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 NEUROG2(var.2) 0.739 0.683 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_8nt_mkv5_m41 MA1620.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 Ptf1a(var.3) 0.793 0.671 12 12 11 13 0.8462 0.9167 0.9167 R 1
oligos_8nt_mkv5_m41 MA1485.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 FERD3L 0.782 0.670 12 14 12 14 0.8571 1.0000 0.8571 R 0
oligos_8nt_mkv5_m41 MA0691.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 TFAP4 0.803 0.669 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv5_m41 MA1472.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 BHLHA15(var.2) 0.802 0.668 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv5_m41 MA0820.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 FIGLA 0.801 0.668 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv5_m41 MA1621.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 Rbpjl 0.775 0.664 12 14 12 14 0.8571 1.0000 0.8571 R 0
oligos_8nt_mkv5_m41 MA1641.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 MYF5 0.785 0.664 12 12 11 13 0.8462 0.9167 0.9167 D 1
oligos_8nt_mkv5_m41 MA1619.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 Ptf1a(var.2) 0.774 0.655 12 12 11 13 0.8462 0.9167 0.9167 D 1
oligos_8nt_mkv5_m41 MA1559.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 SNAI3 0.782 0.652 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv5_m41 MA0816.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 Ascl2 0.774 0.645 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv5_m41 MA0521.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 Tcf12 0.825 0.635 12 11 10 13 0.7692 0.8333 0.9091 D 2
oligos_8nt_mkv5_m41 MA0500.2 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 MYOG 0.740 0.626 12 12 11 13 0.8462 0.9167 0.9167 R 1
oligos_8nt_mkv5_m41 MA1570.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 TFAP4(var.2) 0.746 0.621 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv5_m41 MA1618.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 Ptf1a 0.785 0.617 12 13 11 14 0.7857 0.9167 0.8462 D 1
oligos_8nt_mkv5_m41 MA1638.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 HAND2 0.725 0.604 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv5_m41 MA1100.2 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 ASCL1 0.722 0.602 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv5_m41 MA0744.2 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 SCRT2 0.784 0.588 12 16 12 16 0.7500 1.0000 0.7500 D -3
oligos_8nt_mkv5_m41 MA1558.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 SNAI1 0.705 0.588 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv5_m41 MA1109.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 NEUROD1 0.741 0.582 12 13 11 14 0.7857 0.9167 0.8462 D 1
oligos_8nt_mkv5_m41 MA0743.2 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 SCRT1 0.775 0.581 12 16 12 16 0.7500 1.0000 0.7500 D -3
oligos_8nt_mkv5_m41 MA1647.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 PRDM4 0.771 0.496 12 11 9 14 0.6429 0.7500 0.8182 R -2
oligos_8nt_mkv5_m41 MA0607.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 Bhlha15 0.721 0.481 12 8 8 12 0.6667 0.6667 1.0000 R 3
oligos_8nt_mkv5_m41 MA0087.1 oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41 Sox5 0.759 0.442 12 7 7 12 0.5833 0.5833 1.0000 R 1 
 Host name	pedagogix
 Job started	2020-04-13.234442
 Job done	2020-04-13.234515
 Seconds	4.48
	user	4.48
	system	0.53
	cuser	26
;	csystem	1.66