Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m6/peak-motifs_oligos_8nt_mkv5_m6_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m6/peak-motifs_oligos_8nt_mkv5_m6.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m6/peak-motifs_oligos_8nt_mkv5_m6_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m6/peak-motifs_oligos_8nt_mkv5_m6.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m6/peak-motifs_oligos_8nt_mkv5_m6_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m6/peak-motifs_oligos_8nt_mkv5_m6_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m6/peak-motifs_oligos_8nt_mkv5_m6_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m6/peak-motifs_oligos_8nt_mkv5_m6_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m6/peak-motifs_oligos_8nt_mkv5_m6_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m6/peak-motifs_oligos_8nt_mkv5_m6_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m6/peak-motifs_oligos_8nt_mkv5_m6.tf
		file1	1	13	840
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv5_m6 MA0499.2 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 MYOD1 0.842 0.842 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv5_m6 MA1641.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 MYF5 0.900 0.831 13 12 12 13 0.9231 0.9231 1.0000 R 0
oligos_8nt_mkv5_m6 MA1619.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 Ptf1a(var.2) 0.893 0.824 13 12 12 13 0.9231 0.9231 1.0000 R 0
oligos_8nt_mkv5_m6 MA0500.2 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 MYOG 0.850 0.784 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_8nt_mkv5_m6 MA0521.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 Tcf12 0.922 0.780 13 11 11 13 0.8462 0.8462 1.0000 R 0
oligos_8nt_mkv5_m6 MA0745.2 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 SNAI2 0.752 0.752 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv5_m6 MA1485.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 FERD3L 0.806 0.749 13 14 13 14 0.9286 1.0000 0.9286 D -1
oligos_8nt_mkv5_m6 MA0832.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 Tcf21 0.787 0.731 13 14 13 14 0.9286 1.0000 0.9286 R -1
oligos_8nt_mkv5_m6 MA1571.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 TGIF2LX 0.786 0.725 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_8nt_mkv5_m6 MA0796.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 TGIF1 0.781 0.721 13 12 12 13 0.9231 0.9231 1.0000 R 0
oligos_8nt_mkv5_m6 MA1618.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 Ptf1a 0.719 0.719 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv5_m6 MA1572.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 TGIF2LY 0.774 0.714 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_8nt_mkv5_m6 MA0797.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 TGIF2 0.767 0.708 13 12 12 13 0.9231 0.9231 1.0000 R 0
oligos_8nt_mkv5_m6 MA1593.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 ZNF317 0.763 0.705 13 12 12 13 0.9231 0.9231 1.0000 R 0
oligos_8nt_mkv5_m6 MA1642.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 NEUROG2(var.2) 0.700 0.700 13 13 13 13 1.0000 1.0000 1.0000 R 0
oligos_8nt_mkv5_m6 MA1621.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 Rbpjl 0.752 0.699 13 14 13 14 0.9286 1.0000 0.9286 D -1
oligos_8nt_mkv5_m6 MA1620.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 Ptf1a(var.3) 0.756 0.698 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_8nt_mkv5_m6 MA1467.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 ATOH1(var.2) 0.899 0.691 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_8nt_mkv5_m6 MA0783.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 PKNOX2 0.725 0.669 13 12 12 13 0.9231 0.9231 1.0000 R 0
oligos_8nt_mkv5_m6 MA1472.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 BHLHA15(var.2) 0.863 0.664 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_8nt_mkv5_m6 MA1635.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 BHLHE22(var.2) 0.853 0.656 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_8nt_mkv5_m6 MA0691.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 TFAP4 0.830 0.638 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_8nt_mkv5_m6 MA1100.2 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 ASCL1 0.814 0.626 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_8nt_mkv5_m6 MA0665.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 MSC 0.812 0.625 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_8nt_mkv5_m6 MA1109.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 NEUROD1 0.724 0.620 13 13 12 14 0.8571 0.9231 0.9231 R -1
oligos_8nt_mkv5_m6 MA1123.2 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 TWIST1 0.718 0.616 13 13 12 14 0.8571 0.9231 0.9231 D -1
oligos_8nt_mkv5_m6 MA0816.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 Ascl2 0.799 0.614 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_8nt_mkv5_m6 MA0667.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 MYF6 0.780 0.600 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_8nt_mkv5_m6 MA0048.2 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 NHLH1 0.741 0.570 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_8nt_mkv5_m6 MA0820.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 FIGLA 0.741 0.570 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_8nt_mkv5_m6 MA0100.3 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 MYB 0.706 0.543 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_8nt_mkv5_m6 MA0774.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 MEIS2 0.834 0.513 13 8 8 13 0.6154 0.6154 1.0000 R 5
oligos_8nt_mkv5_m6 MA0775.1 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 MEIS3 0.802 0.494 13 8 8 13 0.6154 0.6154 1.0000 R 5
oligos_8nt_mkv5_m6 MA0498.2 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 MEIS1 0.839 0.452 13 7 7 13 0.5385 0.5385 1.0000 R 6
oligos_8nt_mkv5_m6 MA0782.2 oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6 PKNOX1 0.738 0.410 13 15 10 18 0.5556 0.7692 0.6667 R 3 
 Host name	pedagogix
 Job started	2020-04-13.233205
 Job done	2020-04-13.233240
 Seconds	5.14
	user	5.14
	system	0.62
	cuser	27.86
;	csystem	1.79