Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m7/peak-motifs_oligos_8nt_mkv5_m7_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m7/peak-motifs_oligos_8nt_mkv5_m7.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m7/peak-motifs_oligos_8nt_mkv5_m7_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m7/peak-motifs_oligos_8nt_mkv5_m7.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m7/peak-motifs_oligos_8nt_mkv5_m7_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m7/peak-motifs_oligos_8nt_mkv5_m7_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m7/peak-motifs_oligos_8nt_mkv5_m7_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m7/peak-motifs_oligos_8nt_mkv5_m7_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m7/peak-motifs_oligos_8nt_mkv5_m7_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m7/peak-motifs_oligos_8nt_mkv5_m7_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m7/peak-motifs_oligos_8nt_mkv5_m7.tf
		file1	1	14	312
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv5_m7 MA0499.2 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 MYOD1 0.875 0.813 14 13 13 14 0.9286 0.9286 1.0000 D 0
oligos_8nt_mkv5_m7 MA0745.2 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 SNAI2 0.856 0.795 14 13 13 14 0.9286 0.9286 1.0000 D 0
oligos_8nt_mkv5_m7 MA0783.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 PKNOX2 0.905 0.775 14 12 12 14 0.8571 0.8571 1.0000 R 0
oligos_8nt_mkv5_m7 MA1621.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 Rbpjl 0.882 0.764 14 14 13 15 0.8667 0.9286 0.9286 D -1
oligos_8nt_mkv5_m7 MA0797.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 TGIF2 0.882 0.756 14 12 12 14 0.8571 0.8571 1.0000 R 0
oligos_8nt_mkv5_m7 MA1620.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 Ptf1a(var.3) 0.874 0.749 14 12 12 14 0.8571 0.8571 1.0000 D 0
oligos_8nt_mkv5_m7 MA0796.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 TGIF1 0.869 0.745 14 12 12 14 0.8571 0.8571 1.0000 R 0
oligos_8nt_mkv5_m7 MA1571.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 TGIF2LX 0.865 0.742 14 12 12 14 0.8571 0.8571 1.0000 D 0
oligos_8nt_mkv5_m7 MA1572.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 TGIF2LY 0.857 0.735 14 12 12 14 0.8571 0.8571 1.0000 D 0
oligos_8nt_mkv5_m7 MA0830.2 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 TCF4 0.754 0.700 14 13 13 14 0.9286 0.9286 1.0000 D 0
oligos_8nt_mkv5_m7 MA1631.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 ASCL1(var.2) 0.747 0.693 14 13 13 14 0.9286 0.9286 1.0000 D 0
oligos_8nt_mkv5_m7 MA1641.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 MYF5 0.801 0.687 14 12 12 14 0.8571 0.8571 1.0000 R 0
oligos_8nt_mkv5_m7 MA1485.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 FERD3L 0.787 0.682 14 14 13 15 0.8667 0.9286 0.9286 D -1
oligos_8nt_mkv5_m7 MA1619.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 Ptf1a(var.2) 0.789 0.677 14 12 12 14 0.8571 0.8571 1.0000 D 0
oligos_8nt_mkv5_m7 MA0521.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 Tcf12 0.830 0.652 14 11 11 14 0.7857 0.7857 1.0000 R 0
oligos_8nt_mkv5_m7 MA0832.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 Tcf21 0.721 0.625 14 14 13 15 0.8667 0.9286 0.9286 R -1
oligos_8nt_mkv5_m7 MA1467.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 ATOH1(var.2) 0.867 0.620 14 10 10 14 0.7143 0.7143 1.0000 D 1
oligos_8nt_mkv5_m7 MA0500.2 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 MYOG 0.712 0.610 14 12 12 14 0.8571 0.8571 1.0000 R 0
oligos_8nt_mkv5_m7 MA0820.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 FIGLA 0.849 0.607 14 10 10 14 0.7143 0.7143 1.0000 D 1
oligos_8nt_mkv5_m7 MA0103.3 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 ZEB1 0.767 0.602 14 11 11 14 0.7857 0.7857 1.0000 D 1
oligos_8nt_mkv5_m7 MA1558.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 SNAI1 0.841 0.601 14 10 10 14 0.7143 0.7143 1.0000 R 1
oligos_8nt_mkv5_m7 MA1618.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 Ptf1a 0.748 0.598 14 13 12 15 0.8000 0.8571 0.9231 R -1
oligos_8nt_mkv5_m7 MA1559.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 SNAI3 0.836 0.597 14 10 10 14 0.7143 0.7143 1.0000 R 1
oligos_8nt_mkv5_m7 MA0667.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 MYF6 0.803 0.573 14 10 10 14 0.7143 0.7143 1.0000 D 1
oligos_8nt_mkv5_m7 MA1472.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 BHLHA15(var.2) 0.798 0.570 14 10 10 14 0.7143 0.7143 1.0000 D 1
oligos_8nt_mkv5_m7 MA0665.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 MSC 0.783 0.559 14 10 10 14 0.7143 0.7143 1.0000 D 1
oligos_8nt_mkv5_m7 MA1100.2 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 ASCL1 0.774 0.553 14 10 10 14 0.7143 0.7143 1.0000 R 1
oligos_8nt_mkv5_m7 MA1648.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 TCF12(var.2) 0.701 0.551 14 11 11 14 0.7857 0.7857 1.0000 D 1
oligos_8nt_mkv5_m7 MA0774.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 MEIS2 0.942 0.539 14 8 8 14 0.5714 0.5714 1.0000 R 5
oligos_8nt_mkv5_m7 MA1635.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 BHLHE22(var.2) 0.744 0.531 14 10 10 14 0.7143 0.7143 1.0000 R 1
oligos_8nt_mkv5_m7 MA0775.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 MEIS3 0.925 0.529 14 8 8 14 0.5714 0.5714 1.0000 R 5
oligos_8nt_mkv5_m7 MA0816.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 Ascl2 0.737 0.527 14 10 10 14 0.7143 0.7143 1.0000 D 1
oligos_8nt_mkv5_m7 MA0691.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 TFAP4 0.724 0.517 14 10 10 14 0.7143 0.7143 1.0000 D 1
oligos_8nt_mkv5_m7 MA0819.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 CLOCK 0.722 0.516 14 10 10 14 0.7143 0.7143 1.0000 D 1
oligos_8nt_mkv5_m7 MA0649.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 HEY2 0.719 0.513 14 10 10 14 0.7143 0.7143 1.0000 R 1
oligos_8nt_mkv5_m7 MA0807.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 TBX5 0.895 0.512 14 8 8 14 0.5714 0.5714 1.0000 R 0
oligos_8nt_mkv5_m7 MA0100.3 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 MYB 0.711 0.508 14 10 10 14 0.7143 0.7143 1.0000 D 1
oligos_8nt_mkv5_m7 MA0806.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 TBX4 0.886 0.506 14 8 8 14 0.5714 0.5714 1.0000 R 0
oligos_8nt_mkv5_m7 MA0803.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 TBX15 0.870 0.497 14 8 8 14 0.5714 0.5714 1.0000 R 0
oligos_8nt_mkv5_m7 MA0805.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 TBX1 0.849 0.485 14 8 8 14 0.5714 0.5714 1.0000 R 0
oligos_8nt_mkv5_m7 MA1114.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 PBX3 0.755 0.477 14 17 12 19 0.6316 0.8571 0.7059 R 2
oligos_8nt_mkv5_m7 MA0801.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 MGA 0.830 0.474 14 8 8 14 0.5714 0.5714 1.0000 R 0
oligos_8nt_mkv5_m7 MA0782.2 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 PKNOX1 0.760 0.464 14 15 11 18 0.6111 0.7857 0.7333 R 3
oligos_8nt_mkv5_m7 MA0498.2 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 MEIS1 0.916 0.458 14 7 7 14 0.5000 0.5000 1.0000 R 6
oligos_8nt_mkv5_m7 MA1567.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 TBX6 0.762 0.457 14 10 9 15 0.6000 0.6429 0.9000 R -1
oligos_8nt_mkv5_m7 MA1566.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 TBX3 0.749 0.449 14 10 9 15 0.6000 0.6429 0.9000 R -1
oligos_8nt_mkv5_m7 MA0690.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 TBX21 0.719 0.431 14 10 9 15 0.6000 0.6429 0.9000 R -1
oligos_8nt_mkv5_m7 MA0802.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 TBR1 0.849 0.424 14 10 8 16 0.5000 0.5714 0.8000 R -2
oligos_8nt_mkv5_m7 MA0688.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 TBX2 0.743 0.418 14 11 9 16 0.5625 0.6429 0.8182 R -2
oligos_8nt_mkv5_m7 MA0689.1 oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7 TBX20 0.721 0.405 14 11 9 16 0.5625 0.6429 0.8182 R -2 
 Host name	pedagogix
 Job started	2020-04-13.233241
 Job done	2020-04-13.233337
 Seconds	8.05
	user	8.05
	system	0.93
	cuser	43.62
;	csystem	2.6