One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m8/peak-motifs_oligos_8nt_mkv5_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m8/peak-motifs_oligos_8nt_mkv5_m8_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m8_shift2 ; 6 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_8nt_mkv5_m8_shift2 (oligos_8nt_mkv5_m8oligos_8nt_mkv5_m8)     
; oligos_8nt_mkv5_m8 (oligos_8nt_mkv5_m8oligos_8nt_mkv5_m8); m=0 (reference); ncol1=13; shift=2; ncol=15; --ssGCGCAGGCGss
; Alignment reference
a	0	0	28	32	14	10	3	2	150	5	2	5	4	16	30
c	0	0	70	63	13	171	7	187	13	14	11	184	5	87	67
g	0	0	80	62	163	12	183	4	21	161	181	4	182	67	80
t	0	0	17	38	5	2	2	2	11	15	1	2	4	25	18
MA0506.1_rc_shift3 (NRF1_rc) 
; oligos_8nt_mkv5_m8 versus MA0506.1_rc (NRF1_rc); m=1/5; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.792576; ---yGCGCAkGCGC-
; cor=; Ncor=
a	0	0	0	0.0	0.0	0.0	286.0	0.0	3693.0	313.0	140.0	0.0	0.0	0.0	0
c	0	0	0	1575.0	0.0	4275.0	0.0	4624.0	528.0	935.0	468.0	4239.0	0.0	3647.0	0
g	0	0	0	804.0	4550.0	349.0	4338.0	0.0	403.0	1862.0	4016.0	189.0	4001.0	375.0	0
t	0	0	0	2245.0	74.0	0.0	0.0	0.0	0.0	1514.0	0.0	196.0	623.0	602.0	0
MA1648.1_rc_shift4 (TCF12(var.2)_rc) 
; oligos_8nt_mkv5_m8 versus MA1648.1_rc (TCF12(var.2)_rc); m=2/5; ncol2=11; w=11; offset=2; strand=R; shift=4; score=0.617836; ----srGCAGGTGss
; cor=; Ncor=
a	0	0	0	0	12248.0	16113.0	3412.0	1047.0	53985.0	662.0	1754.0	1733.0	1887.0	10887.0	12473.0
c	0	0	0	0	20060.0	14293.0	2314.0	55922.0	2625.0	3536.0	3780.0	5607.0	1186.0	18560.0	16996.0
g	0	0	0	0	18154.0	17603.0	55061.0	2088.0	3886.0	55765.0	55598.0	2007.0	57848.0	17594.0	19393.0
t	0	0	0	0	11414.0	13867.0	1089.0	2819.0	1380.0	1913.0	744.0	52529.0	955.0	14835.0	13014.0
MA0522.3_rc_shift4 (TCF3_rc) 
; oligos_8nt_mkv5_m8 versus MA0522.3_rc (TCF3_rc); m=3/5; ncol2=11; w=11; offset=2; strand=R; shift=4; score=0.612046; ----ssGCAGGTGbs
; cor=; Ncor=
a	0	0	0	0	6432.0	7233.0	1237.0	492.0	27539.0	283.0	950.0	375.0	705.0	4528.0	6240.0
c	0	0	0	0	9222.0	8025.0	987.0	28642.0	1339.0	2652.0	1362.0	1574.0	708.0	9432.0	8539.0
g	0	0	0	0	10122.0	8727.0	28742.0	1038.0	2003.0	27199.0	28640.0	396.0	29379.0	9269.0	10212.0
t	0	0	0	0	5485.0	7276.0	295.0	1089.0	380.0	1127.0	309.0	28916.0	469.0	8032.0	6270.0
MA0472.2_rc_shift3 (EGR2_rc) 
; oligos_8nt_mkv5_m8 versus MA0472.2_rc (EGR2_rc); m=4/5; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.592308; ---tGCGTGGGCGk-
; cor=; Ncor=
a	0	0	0	430.0	115.0	171.0	23.0	2.0	277.0	13.0	29.0	222.0	73.0	142.0	0
c	0	0	0	542.0	20.0	4034.0	2.0	26.0	38.0	15.0	25.0	3731.0	28.0	94.0	0
g	0	0	0	157.0	1585.0	0.0	1573.0	110.0	1468.0	1554.0	1558.0	0.0	1551.0	679.0	0
t	0	0	0	1731.0	4.0	106.0	0.0	2147.0	0.0	24.0	6.0	295.0	0.0	1157.0	0
MA1650.1_shift0 (ZBTB14) 
; oligos_8nt_mkv5_m8 versus MA1650.1 (ZBTB14); m=5/5; ncol2=12; w=10; offset=-2; strand=D; shift=0; score=0.469351; ssCCGCGCACss---
; cor=; Ncor=
a	570.0	501.0	335.0	41.0	93.0	68.0	132.0	56.0	4500.0	99.0	970.0	442.0	0	0	0
c	1779.0	1972.0	3525.0	4292.0	294.0	4078.0	305.0	4178.0	37.0	3674.0	1618.0	2260.0	0	0	0
g	1668.0	1555.0	614.0	155.0	4098.0	319.0	4043.0	261.0	10.0	651.0	1451.0	1239.0	0	0	0
t	530.0	519.0	73.0	59.0	62.0	82.0	67.0	52.0	0.0	123.0	508.0	606.0	0	0	0