One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m9/peak-motifs_oligos_8nt_mkv5_m9.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/oligos_8nt_mkv5_m9/peak-motifs_oligos_8nt_mkv5_m9_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m9_shift4 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m9_shift4 (oligos_8nt_mkv5_m9oligos_8nt_mkv5_m9)
; oligos_8nt_mkv5_m9 (oligos_8nt_mkv5_m9oligos_8nt_mkv5_m9); m=0 (reference); ncol1=12; shift=4; ncol=16; ----scCGCCrCCGcs ; Alignment reference a 0 0 0 0 33 27 4 6 3 3 135 4 0 1 21 40 c 0 0 0 0 79 157 253 5 256 260 37 248 258 13 160 129 g 0 0 0 0 131 57 13 258 6 3 83 15 10 253 65 68 t 0 0 0 0 27 29 0 1 5 4 15 3 2 3 24 33

MA0472.2_shift5 (EGR2)
; oligos_8nt_mkv5_m9 versus MA0472.2 (EGR2); m=1/6; ncol2=11; w=11; offset=1; strand=D; shift=5; score=0.641756; -----mCGCCCACGCa ; cor=; Ncor= a 0 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 c 0 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 g 0 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 t 0 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0

MA0162.4_shift3 (EGR1)
; oligos_8nt_mkv5_m9 versus MA0162.4 (EGR1); m=2/6; ncol2=14; w=12; offset=-1; strand=D; shift=3; score=0.625293; ---ccmCGCCCACgCm ; cor=; Ncor= a 0 0 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 c 0 0 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 g 0 0 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 t 0 0 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0

MA0732.1_shift3 (EGR3)
; oligos_8nt_mkv5_m9 versus MA0732.1 (EGR3); m=3/6; ncol2=15; w=12; offset=-1; strand=D; shift=3; score=0.579324; ---yhmCGCCCMCGCA ; cor=; Ncor= a 0 0 0 337.0 444.0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 c 0 0 0 645.0 485.0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 g 0 0 0 278.0 191.0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 t 0 0 0 470.0 540.0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0

MA1513.1_shift2 (KLF15)
; oligos_8nt_mkv5_m9 versus MA1513.1 (KLF15); m=4/6; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.472182; --scCCCGCCCcs--- ; cor=; Ncor= a 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 c 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 g 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 t 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0

MA0741.1_shift2 (KLF16)
; oligos_8nt_mkv5_m9 versus MA0741.1 (KLF16); m=5/6; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.463016; --gmCMCgCCCMC--- ; cor=; Ncor= a 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 c 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 g 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 t 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0

MA0471.2_rc_shift0 (E2F6_rc)
; oligos_8nt_mkv5_m9 versus MA0471.2_rc (E2F6_rc); m=6/6; ncol2=13; w=9; offset=-4; strand=R; shift=0; score=0.419728; syTTCCCGCCyyc--- ; cor=; Ncor= a 5600.0 4163.0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 6897.0 5665.0 5369.0 0 0 0 c 11405.0 12530.0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 11562.0 11649.0 12358.0 0 0 0 g 8477.0 7410.0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 5102.0 7405.0 8075.0 0 0 0 t 7616.0 8995.0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 9537.0 8379.0 7296.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv5_m9_shift4 (oligos_8nt_mkv5_m9oligos_8nt_mkv5_m9)				; oligos_8nt_mkv5_m9 (oligos_8nt_mkv5_m9oligos_8nt_mkv5_m9); m=0 (reference); ncol1=12; shift=4; ncol=16; ----scCGCCrCCGcs ; Alignment reference a 0 0 0 0 33 27 4 6 3 3 135 4 0 1 21 40 c 0 0 0 0 79 157 253 5 256 260 37 248 258 13 160 129 g 0 0 0 0 131 57 13 258 6 3 83 15 10 253 65 68 t 0 0 0 0 27 29 0 1 5 4 15 3 2 3 24 33
MA0472.2_shift5 (EGR2)				; oligos_8nt_mkv5_m9 versus MA0472.2 (EGR2); m=1/6; ncol2=11; w=11; offset=1; strand=D; shift=5; score=0.641756; -----mCGCCCACGCa ; cor=; Ncor= a 0 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 c 0 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 g 0 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 t 0 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0
MA0162.4_shift3 (EGR1)				; oligos_8nt_mkv5_m9 versus MA0162.4 (EGR1); m=2/6; ncol2=14; w=12; offset=-1; strand=D; shift=3; score=0.625293; ---ccmCGCCCACgCm ; cor=; Ncor= a 0 0 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 c 0 0 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 g 0 0 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 t 0 0 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0
MA0732.1_shift3 (EGR3)				; oligos_8nt_mkv5_m9 versus MA0732.1 (EGR3); m=3/6; ncol2=15; w=12; offset=-1; strand=D; shift=3; score=0.579324; ---yhmCGCCCMCGCA ; cor=; Ncor= a 0 0 0 337.0 444.0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 c 0 0 0 645.0 485.0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 g 0 0 0 278.0 191.0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 t 0 0 0 470.0 540.0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0
MA1513.1_shift2 (KLF15)				; oligos_8nt_mkv5_m9 versus MA1513.1 (KLF15); m=4/6; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.472182; --scCCCGCCCcs--- ; cor=; Ncor= a 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 c 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 g 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 t 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0
MA0741.1_shift2 (KLF16)				; oligos_8nt_mkv5_m9 versus MA0741.1 (KLF16); m=5/6; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.463016; --gmCMCgCCCMC--- ; cor=; Ncor= a 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 c 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 g 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 t 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0
MA0471.2_rc_shift0 (E2F6_rc)				; oligos_8nt_mkv5_m9 versus MA0471.2_rc (E2F6_rc); m=6/6; ncol2=13; w=9; offset=-4; strand=R; shift=0; score=0.419728; syTTCCCGCCyyc--- ; cor=; Ncor= a 5600.0 4163.0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 6897.0 5665.0 5369.0 0 0 0 c 11405.0 12530.0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 11562.0 11649.0 12358.0 0 0 0 g 8477.0 7410.0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 5102.0 7405.0 8075.0 0 0 0 t 7616.0 8995.0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 9537.0 8379.0 7296.0 0 0 0