Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m3/peak-motifs_positions_6nt_m3_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m3/peak-motifs_positions_6nt_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m3/peak-motifs_positions_6nt_m3_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m3/peak-motifs_positions_6nt_m3.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m3/peak-motifs_positions_6nt_m3_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m3/peak-motifs_positions_6nt_m3_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m3/peak-motifs_positions_6nt_m3_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m3/peak-motifs_positions_6nt_m3_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m3/peak-motifs_positions_6nt_m3_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m3/peak-motifs_positions_6nt_m3_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m3/peak-motifs_positions_6nt_m3.tf
		file1	1	15	1405
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_6nt_m3 MA0500.2 positions_6nt_m3positions_6nt_m3 MYOG 0.928 0.743 15 12 12 15 0.8000 0.8000 1.0000 R 2
positions_6nt_m3 MA1631.1 positions_6nt_m3positions_6nt_m3 ASCL1(var.2) 0.796 0.690 15 13 13 15 0.8667 0.8667 1.0000 R 1
positions_6nt_m3 MA0830.2 positions_6nt_m3positions_6nt_m3 TCF4 0.778 0.674 15 13 13 15 0.8667 0.8667 1.0000 R 1
positions_6nt_m3 MA0832.1 positions_6nt_m3positions_6nt_m3 Tcf21 0.719 0.671 15 14 14 15 0.9333 0.9333 1.0000 D 1
positions_6nt_m3 MA1529.1 positions_6nt_m3positions_6nt_m3 NHLH2 0.795 0.662 15 18 15 18 0.8333 1.0000 0.8333 D -1
positions_6nt_m3 MA0521.1 positions_6nt_m3positions_6nt_m3 Tcf12 0.895 0.657 15 11 11 15 0.7333 0.7333 1.0000 D 3
positions_6nt_m3 MA1619.1 positions_6nt_m3positions_6nt_m3 Ptf1a(var.2) 0.799 0.639 15 12 12 15 0.8000 0.8000 1.0000 D 2
positions_6nt_m3 MA0816.1 positions_6nt_m3positions_6nt_m3 Ascl2 0.946 0.631 15 10 10 15 0.6667 0.6667 1.0000 D 3
positions_6nt_m3 MA1641.1 positions_6nt_m3positions_6nt_m3 MYF5 0.787 0.630 15 12 12 15 0.8000 0.8000 1.0000 D 2
positions_6nt_m3 MA0499.2 positions_6nt_m3positions_6nt_m3 MYOD1 0.721 0.625 15 13 13 15 0.8667 0.8667 1.0000 R 1
positions_6nt_m3 MA1100.2 positions_6nt_m3positions_6nt_m3 ASCL1 0.927 0.618 15 10 10 15 0.6667 0.6667 1.0000 D 3
positions_6nt_m3 MA0048.2 positions_6nt_m3positions_6nt_m3 NHLH1 0.912 0.608 15 10 10 15 0.6667 0.6667 1.0000 R 3
positions_6nt_m3 MA1635.1 positions_6nt_m3positions_6nt_m3 BHLHE22(var.2) 0.899 0.599 15 10 10 15 0.6667 0.6667 1.0000 R 3
positions_6nt_m3 MA1472.1 positions_6nt_m3positions_6nt_m3 BHLHA15(var.2) 0.856 0.571 15 10 10 15 0.6667 0.6667 1.0000 D 3
positions_6nt_m3 MA1648.1 positions_6nt_m3positions_6nt_m3 TCF12(var.2) 0.747 0.548 15 11 11 15 0.7333 0.7333 1.0000 R 2
positions_6nt_m3 MA0522.3 positions_6nt_m3positions_6nt_m3 TCF3 0.737 0.541 15 11 11 15 0.7333 0.7333 1.0000 R 2
positions_6nt_m3 MA1467.1 positions_6nt_m3positions_6nt_m3 ATOH1(var.2) 0.786 0.524 15 10 10 15 0.6667 0.6667 1.0000 D 3
positions_6nt_m3 MA0691.1 positions_6nt_m3positions_6nt_m3 TFAP4 0.778 0.518 15 10 10 15 0.6667 0.6667 1.0000 D 3
positions_6nt_m3 MA0665.1 positions_6nt_m3positions_6nt_m3 MSC 0.750 0.500 15 10 10 15 0.6667 0.6667 1.0000 R 3
positions_6nt_m3 MA1559.1 positions_6nt_m3positions_6nt_m3 SNAI3 0.748 0.499 15 10 10 15 0.6667 0.6667 1.0000 D 3
positions_6nt_m3 MA1558.1 positions_6nt_m3positions_6nt_m3 SNAI1 0.730 0.487 15 10 10 15 0.6667 0.6667 1.0000 D 3 
 Host name	pedagogix
 Job started	2020-04-13.225901
 Job done	2020-04-13.225925
 Seconds	3.83
	user	3.83
	system	0.45
	cuser	18.54
;	csystem	1.03