One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m3/peak-motifs_positions_6nt_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m3/peak-motifs_positions_6nt_m3_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_6nt_m3_shift1 ; 22 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m3_shift1 (positions_6nt_m3positions_6nt_m3)
; positions_6nt_m3 (positions_6nt_m3positions_6nt_m3); m=0 (reference); ncol1=15; shift=1; ncol=18; -sgcAGCAGCTGCags-- ; Alignment reference a 0 333 348 147 1021 152 4 1378 1 6 2 6 34 669 235 257 0 0 c 0 416 302 754 97 37 1397 10 2 1368 8 2 1249 274 341 498 0 0 g 0 430 568 342 205 1207 3 6 1400 28 6 1397 62 124 626 364 0 0 t 0 226 187 162 82 9 1 11 2 3 1389 0 60 338 203 286 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_6nt_m3 versus MA0500.2_rc (MYOG_rc); m=1/21; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.74261; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; positions_6nt_m3 versus MA1631.1_rc (ASCL1(var.2)_rc); m=2/21; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.689652; --gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; positions_6nt_m3 versus MA0830.2_rc (TCF4_rc); m=3/21; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.674113; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA0832.1_shift2 (Tcf21)
; positions_6nt_m3 versus MA0832.1 (Tcf21); m=4/21; ncol2=14; w=14; offset=1; strand=D; shift=2; score=0.671046; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA1529.1_shift0 (NHLH2)
; positions_6nt_m3 versus MA1529.1 (NHLH2); m=5/21; ncol2=18; w=15; offset=-1; strand=D; shift=0; score=0.662425; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0521.1_shift4 (Tcf12)
; positions_6nt_m3 versus MA0521.1 (Tcf12); m=6/21; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.656584; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; positions_6nt_m3 versus MA1619.1 (Ptf1a(var.2)); m=7/21; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.639244; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0816.1_shift4 (Ascl2)
; positions_6nt_m3 versus MA0816.1 (Ascl2); m=8/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.630769; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1641.1_shift3 (MYF5)
; positions_6nt_m3 versus MA1641.1 (MYF5); m=9/21; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.62976; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; positions_6nt_m3 versus MA0499.2_rc (MYOD1_rc); m=10/21; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.625234; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA1100.2_shift4 (ASCL1)
; positions_6nt_m3 versus MA1100.2 (ASCL1); m=11/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.618171; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; positions_6nt_m3 versus MA0048.2_rc (NHLH1_rc); m=12/21; ncol2=10; w=10; offset=3; strand=R; shift=4; score= 0.6082; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; positions_6nt_m3 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=13/21; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.599119; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; positions_6nt_m3 versus MA1472.1 (BHLHA15(var.2)); m=14/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.570632; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; positions_6nt_m3 versus MA1648.1_rc (TCF12(var.2)_rc); m=15/21; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.548095; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; positions_6nt_m3 versus MA0522.3_rc (TCF3_rc); m=16/21; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.540814; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; positions_6nt_m3 versus MA1467.1 (ATOH1(var.2)); m=17/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.524021; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; positions_6nt_m3 versus MA0691.1 (TFAP4); m=18/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.518488; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; positions_6nt_m3 versus MA0665.1_rc (MSC_rc); m=19/21; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.49994; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA1559.1_shift4 (SNAI3)
; positions_6nt_m3 versus MA1559.1 (SNAI3); m=20/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.498526; ----arCAGGTGya---- ; cor=; Ncor= a 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0

MA1558.1_shift4 (SNAI1)
; positions_6nt_m3 versus MA1558.1 (SNAI1); m=21/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.486991; ----drCAGGTGyr---- ; cor=; Ncor= a 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 0 c 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 0 g 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 0 t 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m3_shift1 (positions_6nt_m3positions_6nt_m3)				; positions_6nt_m3 (positions_6nt_m3positions_6nt_m3); m=0 (reference); ncol1=15; shift=1; ncol=18; -sgcAGCAGCTGCags-- ; Alignment reference a 0 333 348 147 1021 152 4 1378 1 6 2 6 34 669 235 257 0 0 c 0 416 302 754 97 37 1397 10 2 1368 8 2 1249 274 341 498 0 0 g 0 430 568 342 205 1207 3 6 1400 28 6 1397 62 124 626 364 0 0 t 0 226 187 162 82 9 1 11 2 3 1389 0 60 338 203 286 0 0
MA0500.2_rc_shift3 (MYOG_rc)				; positions_6nt_m3 versus MA0500.2_rc (MYOG_rc); m=1/21; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.74261; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0
MA1631.1_rc_shift2 (ASCL1(var.2)_rc)				; positions_6nt_m3 versus MA1631.1_rc (ASCL1(var.2)_rc); m=2/21; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.689652; --gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0
MA0830.2_rc_shift2 (TCF4_rc)				; positions_6nt_m3 versus MA0830.2_rc (TCF4_rc); m=3/21; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.674113; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0
MA0832.1_shift2 (Tcf21)				; positions_6nt_m3 versus MA0832.1 (Tcf21); m=4/21; ncol2=14; w=14; offset=1; strand=D; shift=2; score=0.671046; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0
MA1529.1_shift0 (NHLH2)				; positions_6nt_m3 versus MA1529.1 (NHLH2); m=5/21; ncol2=18; w=15; offset=-1; strand=D; shift=0; score=0.662425; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0
MA0521.1_shift4 (Tcf12)				; positions_6nt_m3 versus MA0521.1 (Tcf12); m=6/21; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.656584; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0
MA1619.1_shift3 (Ptf1a(var.2))				; positions_6nt_m3 versus MA1619.1 (Ptf1a(var.2)); m=7/21; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.639244; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0
MA0816.1_shift4 (Ascl2)				; positions_6nt_m3 versus MA0816.1 (Ascl2); m=8/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.630769; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0
MA1641.1_shift3 (MYF5)				; positions_6nt_m3 versus MA1641.1 (MYF5); m=9/21; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.62976; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0
MA0499.2_rc_shift2 (MYOD1_rc)				; positions_6nt_m3 versus MA0499.2_rc (MYOD1_rc); m=10/21; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.625234; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0
MA1100.2_shift4 (ASCL1)				; positions_6nt_m3 versus MA1100.2 (ASCL1); m=11/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.618171; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0
MA0048.2_rc_shift4 (NHLH1_rc)				; positions_6nt_m3 versus MA0048.2_rc (NHLH1_rc); m=12/21; ncol2=10; w=10; offset=3; strand=R; shift=4; score= 0.6082; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0
MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)				; positions_6nt_m3 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=13/21; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.599119; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0
MA1472.1_shift4 (BHLHA15(var.2))				; positions_6nt_m3 versus MA1472.1 (BHLHA15(var.2)); m=14/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.570632; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0
MA1648.1_rc_shift3 (TCF12(var.2)_rc)				; positions_6nt_m3 versus MA1648.1_rc (TCF12(var.2)_rc); m=15/21; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.548095; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0
MA0522.3_rc_shift3 (TCF3_rc)				; positions_6nt_m3 versus MA0522.3_rc (TCF3_rc); m=16/21; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.540814; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0
MA1467.1_shift4 (ATOH1(var.2))				; positions_6nt_m3 versus MA1467.1 (ATOH1(var.2)); m=17/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.524021; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0
MA0691.1_shift4 (TFAP4)				; positions_6nt_m3 versus MA0691.1 (TFAP4); m=18/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.518488; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0
MA0665.1_rc_shift4 (MSC_rc)				; positions_6nt_m3 versus MA0665.1_rc (MSC_rc); m=19/21; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.49994; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0
MA1559.1_shift4 (SNAI3)				; positions_6nt_m3 versus MA1559.1 (SNAI3); m=20/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.498526; ----arCAGGTGya---- ; cor=; Ncor= a 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0
MA1558.1_shift4 (SNAI1)				; positions_6nt_m3 versus MA1558.1 (SNAI1); m=21/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.486991; ----drCAGGTGyr---- ; cor=; Ncor= a 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 0 c 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 0 g 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 0 t 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0 0