Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4.tf
		file1	1	14	2535
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_6nt_m4 MA0500.2 positions_6nt_m4positions_6nt_m4 MYOG 0.946 0.810 14 12 12 14 0.8571 0.8571 1.0000 R 2
positions_6nt_m4 MA1619.1 positions_6nt_m4positions_6nt_m4 Ptf1a(var.2) 0.862 0.739 14 12 12 14 0.8571 0.8571 1.0000 R 2
positions_6nt_m4 MA1631.1 positions_6nt_m4positions_6nt_m4 ASCL1(var.2) 0.793 0.736 14 13 13 14 0.9286 0.9286 1.0000 R 1
positions_6nt_m4 MA1641.1 positions_6nt_m4positions_6nt_m4 MYF5 0.853 0.731 14 12 12 14 0.8571 0.8571 1.0000 R 2
positions_6nt_m4 MA0521.1 positions_6nt_m4positions_6nt_m4 Tcf12 0.905 0.711 14 11 11 14 0.7857 0.7857 1.0000 R 2
positions_6nt_m4 MA0830.2 positions_6nt_m4positions_6nt_m4 TCF4 0.759 0.705 14 13 13 14 0.9286 0.9286 1.0000 R 1
positions_6nt_m4 MA1485.1 positions_6nt_m4positions_6nt_m4 FERD3L 0.791 0.685 14 14 13 15 0.8667 0.9286 0.9286 D 1
positions_6nt_m4 MA0832.1 positions_6nt_m4positions_6nt_m4 Tcf21 0.785 0.680 14 14 13 15 0.8667 0.9286 0.9286 R 1
positions_6nt_m4 MA0816.1 positions_6nt_m4positions_6nt_m4 Ascl2 0.952 0.680 14 10 10 14 0.7143 0.7143 1.0000 R 3
positions_6nt_m4 MA1618.1 positions_6nt_m4positions_6nt_m4 Ptf1a 0.727 0.675 14 13 13 14 0.9286 0.9286 1.0000 R 1
positions_6nt_m4 MA1635.1 positions_6nt_m4positions_6nt_m4 BHLHE22(var.2) 0.929 0.664 14 10 10 14 0.7143 0.7143 1.0000 R 3
positions_6nt_m4 MA1100.2 positions_6nt_m4positions_6nt_m4 ASCL1 0.928 0.663 14 10 10 14 0.7143 0.7143 1.0000 D 3
positions_6nt_m4 MA0048.2 positions_6nt_m4positions_6nt_m4 NHLH1 0.913 0.652 14 10 10 14 0.7143 0.7143 1.0000 R 3
positions_6nt_m4 MA1472.1 positions_6nt_m4positions_6nt_m4 BHLHA15(var.2) 0.906 0.647 14 10 10 14 0.7143 0.7143 1.0000 D 3
positions_6nt_m4 MA0499.2 positions_6nt_m4positions_6nt_m4 MYOD1 0.791 0.633 14 13 12 15 0.8000 0.8571 0.9231 D 2
positions_6nt_m4 MA1648.1 positions_6nt_m4positions_6nt_m4 TCF12(var.2) 0.788 0.619 14 11 11 14 0.7857 0.7857 1.0000 R 2
positions_6nt_m4 MA1529.1 positions_6nt_m4positions_6nt_m4 NHLH2 0.793 0.617 14 18 14 18 0.7778 1.0000 0.7778 D -1
positions_6nt_m4 MA0522.3 positions_6nt_m4positions_6nt_m4 TCF3 0.780 0.613 14 11 11 14 0.7857 0.7857 1.0000 R 2
positions_6nt_m4 MA1467.1 positions_6nt_m4positions_6nt_m4 ATOH1(var.2) 0.843 0.602 14 10 10 14 0.7143 0.7143 1.0000 D 3
positions_6nt_m4 MA0691.1 positions_6nt_m4positions_6nt_m4 TFAP4 0.842 0.601 14 10 10 14 0.7143 0.7143 1.0000 R 3
positions_6nt_m4 MA0665.1 positions_6nt_m4positions_6nt_m4 MSC 0.820 0.585 14 10 10 14 0.7143 0.7143 1.0000 R 3
positions_6nt_m4 MA0103.3 positions_6nt_m4positions_6nt_m4 ZEB1 0.721 0.566 14 11 11 14 0.7857 0.7857 1.0000 R 2
positions_6nt_m4 MA0745.2 positions_6nt_m4positions_6nt_m4 SNAI2 0.707 0.565 14 13 12 15 0.8000 0.8571 0.9231 D 2
positions_6nt_m4 MA0820.1 positions_6nt_m4positions_6nt_m4 FIGLA 0.752 0.537 14 10 10 14 0.7143 0.7143 1.0000 D 3
positions_6nt_m4 MA0667.1 positions_6nt_m4positions_6nt_m4 MYF6 0.742 0.530 14 10 10 14 0.7143 0.7143 1.0000 D 3
positions_6nt_m4 MA1558.1 positions_6nt_m4positions_6nt_m4 SNAI1 0.737 0.527 14 10 10 14 0.7143 0.7143 1.0000 D 3
positions_6nt_m4 MA0091.1 positions_6nt_m4positions_6nt_m4 TAL1::TCF3 0.705 0.517 14 12 11 15 0.7333 0.7857 0.9167 R 3
positions_6nt_m4 MA1638.1 positions_6nt_m4positions_6nt_m4 HAND2 0.710 0.507 14 10 10 14 0.7143 0.7143 1.0000 D 3
positions_6nt_m4 MA0100.3 positions_6nt_m4positions_6nt_m4 MYB 0.707 0.505 14 10 10 14 0.7143 0.7143 1.0000 R 3
positions_6nt_m4 MA1559.1 positions_6nt_m4positions_6nt_m4 SNAI3 0.705 0.504 14 10 10 14 0.7143 0.7143 1.0000 D 3 
 Host name	pedagogix
 Job started	2020-04-13.225926
 Job done	2020-04-13.230000
 Seconds	5.03
	user	5.03
	system	0.54
	cuser	26.44
;	csystem	1.56