Myogenin_Rep2_motifs50/results/discovered_motifs/positions_7nt_m9/peak-motifs_positions_7nt_m9_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/positions_7nt_m9/peak-motifs_positions_7nt_m9.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/positions_7nt_m9/peak-motifs_positions_7nt_m9_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_7nt_m9/peak-motifs_positions_7nt_m9.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_7nt_m9/peak-motifs_positions_7nt_m9_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_7nt_m9/peak-motifs_positions_7nt_m9_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_7nt_m9/peak-motifs_positions_7nt_m9_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_7nt_m9/peak-motifs_positions_7nt_m9_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_7nt_m9/peak-motifs_positions_7nt_m9_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_7nt_m9/peak-motifs_positions_7nt_m9_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_7nt_m9/peak-motifs_positions_7nt_m9.tf
		file1	1	15	2322
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_7nt_m9 MA0500.2 positions_7nt_m9positions_7nt_m9 MYOG 0.941 0.753 15 12 12 15 0.8000 0.8000 1.0000 R 3
positions_7nt_m9 MA1631.1 positions_7nt_m9positions_7nt_m9 ASCL1(var.2) 0.793 0.687 15 13 13 15 0.8667 0.8667 1.0000 R 2
positions_7nt_m9 MA1619.1 positions_7nt_m9positions_7nt_m9 Ptf1a(var.2) 0.850 0.680 15 12 12 15 0.8000 0.8000 1.0000 R 3
positions_7nt_m9 MA1641.1 positions_7nt_m9positions_7nt_m9 MYF5 0.841 0.673 15 12 12 15 0.8000 0.8000 1.0000 R 3
positions_7nt_m9 MA0521.1 positions_7nt_m9positions_7nt_m9 Tcf12 0.909 0.667 15 11 11 15 0.7333 0.7333 1.0000 R 3
positions_7nt_m9 MA1529.1 positions_7nt_m9positions_7nt_m9 NHLH2 0.792 0.660 15 18 15 18 0.8333 1.0000 0.8333 D 0
positions_7nt_m9 MA0830.2 positions_7nt_m9positions_7nt_m9 TCF4 0.759 0.658 15 13 13 15 0.8667 0.8667 1.0000 R 2
positions_7nt_m9 MA1485.1 positions_7nt_m9positions_7nt_m9 FERD3L 0.783 0.636 15 14 13 16 0.8125 0.8667 0.9286 D 2
positions_7nt_m9 MA0816.1 positions_7nt_m9positions_7nt_m9 Ascl2 0.951 0.634 15 10 10 15 0.6667 0.6667 1.0000 R 4
positions_7nt_m9 MA0832.1 positions_7nt_m9positions_7nt_m9 Tcf21 0.773 0.628 15 14 13 16 0.8125 0.8667 0.9286 R 2
positions_7nt_m9 MA1100.2 positions_7nt_m9positions_7nt_m9 ASCL1 0.928 0.619 15 10 10 15 0.6667 0.6667 1.0000 D 4
positions_7nt_m9 MA1618.1 positions_7nt_m9positions_7nt_m9 Ptf1a 0.712 0.617 15 13 13 15 0.8667 0.8667 1.0000 R 2
positions_7nt_m9 MA1635.1 positions_7nt_m9positions_7nt_m9 BHLHE22(var.2) 0.919 0.613 15 10 10 15 0.6667 0.6667 1.0000 R 4
positions_7nt_m9 MA0048.2 positions_7nt_m9positions_7nt_m9 NHLH1 0.915 0.610 15 10 10 15 0.6667 0.6667 1.0000 R 4
positions_7nt_m9 MA0499.2 positions_7nt_m9positions_7nt_m9 MYOD1 0.799 0.599 15 13 12 16 0.7500 0.8000 0.9231 D 3
positions_7nt_m9 MA1472.1 positions_7nt_m9positions_7nt_m9 BHLHA15(var.2) 0.894 0.596 15 10 10 15 0.6667 0.6667 1.0000 D 4
positions_7nt_m9 MA1648.1 positions_7nt_m9positions_7nt_m9 TCF12(var.2) 0.789 0.579 15 11 11 15 0.7333 0.7333 1.0000 R 3
positions_7nt_m9 MA0522.3 positions_7nt_m9positions_7nt_m9 TCF3 0.781 0.573 15 11 11 15 0.7333 0.7333 1.0000 R 3
positions_7nt_m9 MA1467.1 positions_7nt_m9positions_7nt_m9 ATOH1(var.2) 0.836 0.557 15 10 10 15 0.6667 0.6667 1.0000 D 4
positions_7nt_m9 MA0691.1 positions_7nt_m9positions_7nt_m9 TFAP4 0.828 0.552 15 10 10 15 0.6667 0.6667 1.0000 R 4
positions_7nt_m9 MA0665.1 positions_7nt_m9positions_7nt_m9 MSC 0.807 0.538 15 10 10 15 0.6667 0.6667 1.0000 R 4
positions_7nt_m9 MA0745.2 positions_7nt_m9positions_7nt_m9 SNAI2 0.713 0.535 15 13 12 16 0.7500 0.8000 0.9231 D 3
positions_7nt_m9 MA0103.3 positions_7nt_m9positions_7nt_m9 ZEB1 0.713 0.523 15 11 11 15 0.7333 0.7333 1.0000 R 3
positions_7nt_m9 MA0820.1 positions_7nt_m9positions_7nt_m9 FIGLA 0.736 0.491 15 10 10 15 0.6667 0.6667 1.0000 D 4
positions_7nt_m9 MA1558.1 positions_7nt_m9positions_7nt_m9 SNAI1 0.735 0.490 15 10 10 15 0.6667 0.6667 1.0000 D 4
positions_7nt_m9 MA0667.1 positions_7nt_m9positions_7nt_m9 MYF6 0.734 0.489 15 10 10 15 0.6667 0.6667 1.0000 D 4
positions_7nt_m9 MA1559.1 positions_7nt_m9positions_7nt_m9 SNAI3 0.711 0.474 15 10 10 15 0.6667 0.6667 1.0000 R 4 
 Host name	pedagogix
 Job started	2020-04-13.232902
 Job done	2020-04-13.232933
 Seconds	4.56
	user	4.56
	system	0.52
	cuser	24.43
;	csystem	1.4