One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/positions_8nt_m2/peak-motifs_positions_8nt_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/positions_8nt_m2/peak-motifs_positions_8nt_m2_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_8nt_m2_shift0 ; 24 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_8nt_m2_shift0 (positions_8nt_m2positions_8nt_m2)
; positions_8nt_m2 (positions_8nt_m2positions_8nt_m2); m=0 (reference); ncol1=16; shift=0; ncol=16; vstGACAGCTGCAgss ; Alignment reference a 155 130 83 28 550 2 607 5 7 5 1 21 425 81 117 98 c 160 178 70 23 11 605 1 2 579 3 1 540 51 125 192 164 g 197 232 138 556 42 2 2 603 25 3 608 32 43 330 177 200 t 100 72 321 5 9 3 2 2 1 601 2 19 93 76 126 150

MA0499.2_rc_shift1 (MYOD1_rc)
; positions_8nt_m2 versus MA0499.2_rc (MYOD1_rc); m=1/23; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.69861; -rkrACAGGTGcwg-- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; positions_8nt_m2 versus MA1485.1_rc (FERD3L_rc); m=2/23; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.637081; -GTrACAGCTGkyrC- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0

MA0500.2_rc_shift2 (MYOG_rc)
; positions_8nt_m2 versus MA0500.2_rc (MYOG_rc); m=3/23; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.628543; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA0745.2_rc_shift1 (SNAI2_rc)
; positions_8nt_m2 versus MA0745.2_rc (SNAI2_rc); m=4/23; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.625459; -rykACAGGTGcrt-- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0

MA0521.1_shift3 (Tcf12)
; positions_8nt_m2 versus MA0521.1 (Tcf12); m=5/23; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.624849; ---rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA0832.1_shift1 (Tcf21)
; positions_8nt_m2 versus MA0832.1 (Tcf21); m=6/23; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.612548; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0

MA1641.1_shift2 (MYF5)
; positions_8nt_m2 versus MA1641.1 (MYF5); m=7/23; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.609535; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; positions_8nt_m2 versus MA1619.1 (Ptf1a(var.2)); m=8/23; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.608135; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA0830.2_rc_shift1 (TCF4_rc)
; positions_8nt_m2 versus MA0830.2_rc (TCF4_rc); m=9/23; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.569396; -ssggCAGGTGccg-- ; cor=; Ncor= a 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 c 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 g 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 t 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0

MA0796.1_shift2 (TGIF1)
; positions_8nt_m2 versus MA0796.1 (TGIF1); m=10/23; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.527224; --TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 c 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 g 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 t 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; positions_8nt_m2 versus MA1635.1 (BHLHE22(var.2)); m=11/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.524737; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0

MA1100.2_shift3 (ASCL1)
; positions_8nt_m2 versus MA1100.2 (ASCL1); m=12/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.523919; ---rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; positions_8nt_m2 versus MA1467.1_rc (ATOH1(var.2)_rc); m=13/23; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.512525; ---RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; positions_8nt_m2 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=14/23; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.510098; ---rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0

MA0816.1_shift3 (Ascl2)
; positions_8nt_m2 versus MA0816.1 (Ascl2); m=15/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.509417; ---arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA1648.1_shift3 (TCF12(var.2))
; positions_8nt_m2 versus MA1648.1 (TCF12(var.2)); m=16/23; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.485922; ---ssCACCTGCys-- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0

MA0522.3_shift3 (TCF3)
; positions_8nt_m2 versus MA0522.3 (TCF3); m=17/23; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.484932; ---svCACCTGCss-- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0

MA0048.2_rc_shift3 (NHLH1_rc)
; positions_8nt_m2 versus MA0048.2_rc (NHLH1_rc); m=18/23; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.474448; ---mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA1559.1_shift3 (SNAI3)
; positions_8nt_m2 versus MA1559.1 (SNAI3); m=19/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.46943; ---arCAGGTGya--- ; cor=; Ncor= a 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 c 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 g 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 t 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0

MA0665.1_shift3 (MSC)
; positions_8nt_m2 versus MA0665.1 (MSC); m=20/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.456438; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0

MA0691.1_shift3 (TFAP4)
; positions_8nt_m2 versus MA0691.1 (TFAP4); m=21/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.451443; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0

MA0774.1_shift1 (MEIS2)
; positions_8nt_m2 versus MA0774.1 (MEIS2); m=22/23; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.440507; -tTGACAGs------- ; cor=; Ncor= a 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 0 c 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 0 g 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 0 t 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0 0

MA0775.1_shift1 (MEIS3)
; positions_8nt_m2 versus MA0775.1 (MEIS3); m=23/23; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.421683; -wTGACAgs------- ; cor=; Ncor= a 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 0 c 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 0 g 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 0 t 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_8nt_m2_shift0 (positions_8nt_m2positions_8nt_m2)				; positions_8nt_m2 (positions_8nt_m2positions_8nt_m2); m=0 (reference); ncol1=16; shift=0; ncol=16; vstGACAGCTGCAgss ; Alignment reference a 155 130 83 28 550 2 607 5 7 5 1 21 425 81 117 98 c 160 178 70 23 11 605 1 2 579 3 1 540 51 125 192 164 g 197 232 138 556 42 2 2 603 25 3 608 32 43 330 177 200 t 100 72 321 5 9 3 2 2 1 601 2 19 93 76 126 150
MA0499.2_rc_shift1 (MYOD1_rc)				; positions_8nt_m2 versus MA0499.2_rc (MYOD1_rc); m=1/23; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.69861; -rkrACAGGTGcwg-- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0
MA1485.1_rc_shift1 (FERD3L_rc)				; positions_8nt_m2 versus MA1485.1_rc (FERD3L_rc); m=2/23; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.637081; -GTrACAGCTGkyrC- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0
MA0500.2_rc_shift2 (MYOG_rc)				; positions_8nt_m2 versus MA0500.2_rc (MYOG_rc); m=3/23; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.628543; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0
MA0745.2_rc_shift1 (SNAI2_rc)				; positions_8nt_m2 versus MA0745.2_rc (SNAI2_rc); m=4/23; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.625459; -rykACAGGTGcrt-- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0
MA0521.1_shift3 (Tcf12)				; positions_8nt_m2 versus MA0521.1 (Tcf12); m=5/23; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.624849; ---rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0
MA0832.1_shift1 (Tcf21)				; positions_8nt_m2 versus MA0832.1 (Tcf21); m=6/23; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.612548; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0
MA1641.1_shift2 (MYF5)				; positions_8nt_m2 versus MA1641.1 (MYF5); m=7/23; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.609535; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0
MA1619.1_shift2 (Ptf1a(var.2))				; positions_8nt_m2 versus MA1619.1 (Ptf1a(var.2)); m=8/23; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.608135; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0
MA0830.2_rc_shift1 (TCF4_rc)				; positions_8nt_m2 versus MA0830.2_rc (TCF4_rc); m=9/23; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.569396; -ssggCAGGTGccg-- ; cor=; Ncor= a 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 c 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 g 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 t 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0
MA0796.1_shift2 (TGIF1)				; positions_8nt_m2 versus MA0796.1 (TGIF1); m=10/23; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.527224; --TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 c 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 g 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 t 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0
MA1635.1_shift3 (BHLHE22(var.2))				; positions_8nt_m2 versus MA1635.1 (BHLHE22(var.2)); m=11/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.524737; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0
MA1100.2_shift3 (ASCL1)				; positions_8nt_m2 versus MA1100.2 (ASCL1); m=12/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.523919; ---rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0
MA1467.1_rc_shift3 (ATOH1(var.2)_rc)				; positions_8nt_m2 versus MA1467.1_rc (ATOH1(var.2)_rc); m=13/23; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.512525; ---RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0
MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)				; positions_8nt_m2 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=14/23; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.510098; ---rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0
MA0816.1_shift3 (Ascl2)				; positions_8nt_m2 versus MA0816.1 (Ascl2); m=15/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.509417; ---arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0
MA1648.1_shift3 (TCF12(var.2))				; positions_8nt_m2 versus MA1648.1 (TCF12(var.2)); m=16/23; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.485922; ---ssCACCTGCys-- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0
MA0522.3_shift3 (TCF3)				; positions_8nt_m2 versus MA0522.3 (TCF3); m=17/23; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.484932; ---svCACCTGCss-- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0
MA0048.2_rc_shift3 (NHLH1_rc)				; positions_8nt_m2 versus MA0048.2_rc (NHLH1_rc); m=18/23; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.474448; ---mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0
MA1559.1_shift3 (SNAI3)				; positions_8nt_m2 versus MA1559.1 (SNAI3); m=19/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.46943; ---arCAGGTGya--- ; cor=; Ncor= a 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 c 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 g 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 t 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0
MA0665.1_shift3 (MSC)				; positions_8nt_m2 versus MA0665.1 (MSC); m=20/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.456438; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0
MA0691.1_shift3 (TFAP4)				; positions_8nt_m2 versus MA0691.1 (TFAP4); m=21/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.451443; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0
MA0774.1_shift1 (MEIS2)				; positions_8nt_m2 versus MA0774.1 (MEIS2); m=22/23; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.440507; -tTGACAGs------- ; cor=; Ncor= a 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 0 c 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 0 g 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 0 t 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0 0
MA0775.1_shift1 (MEIS3)				; positions_8nt_m2 versus MA0775.1 (MEIS3); m=23/23; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.421683; -wTGACAgs------- ; cor=; Ncor= a 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 0 c 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 0 g 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 0 t 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0 0