Myogenin_Rep2_motifs50/results/discovered_motifs/positions_8nt_m6/peak-motifs_positions_8nt_m6_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/positions_8nt_m6/peak-motifs_positions_8nt_m6.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_motifs/positions_8nt_m6/peak-motifs_positions_8nt_m6_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_8nt_m6/peak-motifs_positions_8nt_m6.tf
 Output files
	alignments_1ton	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_8nt_m6/peak-motifs_positions_8nt_m6_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_8nt_m6/peak-motifs_positions_8nt_m6_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_8nt_m6/peak-motifs_positions_8nt_m6_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_8nt_m6/peak-motifs_positions_8nt_m6_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_8nt_m6/peak-motifs_positions_8nt_m6_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_8nt_m6/peak-motifs_positions_8nt_m6_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep2_motifs50/results/discovered_motifs/positions_8nt_m6/peak-motifs_positions_8nt_m6.tf
		file1	1	15	745
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_8nt_m6 MA0499.2 positions_8nt_m6positions_8nt_m6 MYOD1 0.867 0.751 15 13 13 15 0.8667 0.8667 1.0000 R 1
positions_8nt_m6 MA1485.1 positions_8nt_m6positions_8nt_m6 FERD3L 0.748 0.698 15 14 14 15 0.9333 0.9333 1.0000 R 1
positions_8nt_m6 MA0500.2 positions_8nt_m6positions_8nt_m6 MYOG 0.860 0.688 15 12 12 15 0.8000 0.8000 1.0000 R 2
positions_8nt_m6 MA1641.1 positions_8nt_m6positions_8nt_m6 MYF5 0.849 0.679 15 12 12 15 0.8000 0.8000 1.0000 D 2
positions_8nt_m6 MA0832.1 positions_8nt_m6positions_8nt_m6 Tcf21 0.723 0.675 15 14 14 15 0.9333 0.9333 1.0000 D 1
positions_8nt_m6 MA1619.1 positions_8nt_m6positions_8nt_m6 Ptf1a(var.2) 0.839 0.671 15 12 12 15 0.8000 0.8000 1.0000 D 2
positions_8nt_m6 MA0521.1 positions_8nt_m6positions_8nt_m6 Tcf12 0.909 0.667 15 11 11 15 0.7333 0.7333 1.0000 D 3
positions_8nt_m6 MA0745.2 positions_8nt_m6positions_8nt_m6 SNAI2 0.767 0.665 15 13 13 15 0.8667 0.8667 1.0000 R 1
positions_8nt_m6 MA0796.1 positions_8nt_m6positions_8nt_m6 TGIF1 0.784 0.628 15 12 12 15 0.8000 0.8000 1.0000 D 2
positions_8nt_m6 MA1571.1 positions_8nt_m6positions_8nt_m6 TGIF2LX 0.783 0.627 15 12 12 15 0.8000 0.8000 1.0000 R 2
positions_8nt_m6 MA1631.1 positions_8nt_m6positions_8nt_m6 ASCL1(var.2) 0.721 0.625 15 13 13 15 0.8667 0.8667 1.0000 D 2
positions_8nt_m6 MA0797.1 positions_8nt_m6positions_8nt_m6 TGIF2 0.774 0.619 15 12 12 15 0.8000 0.8000 1.0000 D 2
positions_8nt_m6 MA1572.1 positions_8nt_m6positions_8nt_m6 TGIF2LY 0.773 0.618 15 12 12 15 0.8000 0.8000 1.0000 R 2
positions_8nt_m6 MA0830.2 positions_8nt_m6positions_8nt_m6 TCF4 0.706 0.612 15 13 13 15 0.8667 0.8667 1.0000 R 1
positions_8nt_m6 MA0783.1 positions_8nt_m6positions_8nt_m6 PKNOX2 0.731 0.585 15 12 12 15 0.8000 0.8000 1.0000 D 2
positions_8nt_m6 MA1467.1 positions_8nt_m6positions_8nt_m6 ATOH1(var.2) 0.861 0.574 15 10 10 15 0.6667 0.6667 1.0000 R 3
positions_8nt_m6 MA1100.2 positions_8nt_m6positions_8nt_m6 ASCL1 0.861 0.574 15 10 10 15 0.6667 0.6667 1.0000 R 3
positions_8nt_m6 MA1635.1 positions_8nt_m6positions_8nt_m6 BHLHE22(var.2) 0.850 0.567 15 10 10 15 0.6667 0.6667 1.0000 D 3
positions_8nt_m6 MA1472.1 positions_8nt_m6positions_8nt_m6 BHLHA15(var.2) 0.843 0.562 15 10 10 15 0.6667 0.6667 1.0000 R 3
positions_8nt_m6 MA0816.1 positions_8nt_m6positions_8nt_m6 Ascl2 0.843 0.562 15 10 10 15 0.6667 0.6667 1.0000 D 3
positions_8nt_m6 MA1620.1 positions_8nt_m6positions_8nt_m6 Ptf1a(var.3) 0.702 0.561 15 12 12 15 0.8000 0.8000 1.0000 D 2
positions_8nt_m6 MA1648.1 positions_8nt_m6positions_8nt_m6 TCF12(var.2) 0.726 0.533 15 11 11 15 0.7333 0.7333 1.0000 D 3
positions_8nt_m6 MA0522.3 positions_8nt_m6positions_8nt_m6 TCF3 0.724 0.531 15 11 11 15 0.7333 0.7333 1.0000 D 3
positions_8nt_m6 MA0048.2 positions_8nt_m6positions_8nt_m6 NHLH1 0.768 0.512 15 10 10 15 0.6667 0.6667 1.0000 D 3
positions_8nt_m6 MA0665.1 positions_8nt_m6positions_8nt_m6 MSC 0.761 0.507 15 10 10 15 0.6667 0.6667 1.0000 D 3
positions_8nt_m6 MA0691.1 positions_8nt_m6positions_8nt_m6 TFAP4 0.746 0.498 15 10 10 15 0.6667 0.6667 1.0000 D 3
positions_8nt_m6 MA0667.1 positions_8nt_m6positions_8nt_m6 MYF6 0.721 0.481 15 10 10 15 0.6667 0.6667 1.0000 R 3
positions_8nt_m6 MA1559.1 positions_8nt_m6positions_8nt_m6 SNAI3 0.704 0.469 15 10 10 15 0.6667 0.6667 1.0000 D 3
positions_8nt_m6 MA0774.1 positions_8nt_m6positions_8nt_m6 MEIS2 0.871 0.465 15 8 8 15 0.5333 0.5333 1.0000 D 1
positions_8nt_m6 MA0775.1 positions_8nt_m6positions_8nt_m6 MEIS3 0.833 0.445 15 8 8 15 0.5333 0.5333 1.0000 D 1
positions_8nt_m6 MA0498.2 positions_8nt_m6positions_8nt_m6 MEIS1 0.885 0.413 15 7 7 15 0.4667 0.4667 1.0000 D 1
positions_8nt_m6 MA0782.2 positions_8nt_m6positions_8nt_m6 PKNOX1 0.706 0.409 15 15 11 19 0.5789 0.7333 0.7333 D -4 
 Host name	pedagogix
 Job started	2020-04-13.235600
 Job done	2020-04-13.235639
 Seconds	5.67
	user	5.68
	system	0.66
	cuser	30.28
;	csystem	1.66