One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep2_motifs50/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep2_motifs50/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_core_nonredundant_vertebrates.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m22_shift1 ; 41 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m22_shift1 (oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22)
; oligos_6nt_mkv3_m22 (oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22); m=0 (reference); ncol1=13; shift=1; ncol=14; -cdGCACCTGCCvy ; Alignment reference a 0 82 141 44 1 525 1 1 1 0 13 5 145 69 c 0 216 110 83 532 6 519 528 7 4 405 406 151 218 g 0 114 149 393 4 6 15 7 6 531 32 7 135 110 t 0 126 138 18 1 1 3 2 524 3 88 120 107 141

MA1631.1_shift1 (ASCL1(var.2))
; oligos_6nt_mkv3_m22 versus MA1631.1 (ASCL1(var.2)); m=1/40; ncol2=13; w=13; offset=0; strand=D; shift=1; score=0.984573; -cdgCACCTGCysc ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0

MA0830.2_shift1 (TCF4)
; oligos_6nt_mkv3_m22 versus MA0830.2 (TCF4); m=2/40; ncol2=13; w=13; offset=0; strand=D; shift=1; score=0.981012; -cggCACCTGccss ; cor=; Ncor= a 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 c 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 g 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 t 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0

MA0499.2_shift1 (MYOD1)
; oligos_6nt_mkv3_m22 versus MA0499.2 (MYOD1); m=3/40; ncol2=13; w=13; offset=0; strand=D; shift=1; score=0.888701; -cwgCACCTGTymy ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0

MA0745.2_shift1 (SNAI2)
; oligos_6nt_mkv3_m22 versus MA0745.2 (SNAI2); m=4/40; ncol2=13; w=13; offset=0; strand=D; shift=1; score=0.888108; -aygCACCTGTmry ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0

MA1648.1_shift2 (TCF12(var.2))
; oligos_6nt_mkv3_m22 versus MA1648.1 (TCF12(var.2)); m=5/40; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.791466; --ssCACCTGCys- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0

MA0522.3_shift2 (TCF3)
; oligos_6nt_mkv3_m22 versus MA0522.3 (TCF3); m=6/40; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.788378; --svCACCTGCss- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0

MA1621.1_shift0 (Rbpjl)
; oligos_6nt_mkv3_m22 versus MA1621.1 (Rbpjl); m=7/40; ncol2=14; w=13; offset=-1; strand=D; shift=0; score=0.784814; svmaCACCTGtsyc ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0

MA0103.3_shift2 (ZEB1)
; oligos_6nt_mkv3_m22 versus MA0103.3 (ZEB1); m=8/40; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.775667; --ssCACCTGsss- ; cor=; Ncor= a 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 c 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 g 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 t 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0

MA1620.1_shift1 (Ptf1a(var.3))
; oligos_6nt_mkv3_m22 versus MA1620.1 (Ptf1a(var.3)); m=9/40; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.755329; -rmaCACCTGtky- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0

MA1558.1_rc_shift2 (SNAI1_rc)
; oligos_6nt_mkv3_m22 versus MA1558.1_rc (SNAI1_rc); m=10/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.726483; --yrCACCTGyh-- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0

MA0822.1_shift1 (HES7)
; oligos_6nt_mkv3_m22 versus MA0822.1 (HES7); m=11/40; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.712772; -yGGCACGTGCCr- ; cor=; Ncor= a 0 168.0 24.0 160.0 1.0 1864.0 0.0 4.0 3.0 2.0 8.0 0.0 946.0 0 c 0 790.0 19.0 29.0 1864.0 3.0 1864.0 1.0 3.0 1.0 1864.0 1864.0 47.0 0 g 0 43.0 1864.0 1864.0 0.0 7.0 0.0 1864.0 1.0 1864.0 5.0 9.0 734.0 0 t 0 863.0 3.0 2.0 3.0 0.0 0.0 1.0 1864.0 0.0 93.0 9.0 137.0 0

MA0821.1_shift1 (HES5)
; oligos_6nt_mkv3_m22 versus MA0821.1 (HES5); m=12/40; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.710147; -yGrCACGTGCCr- ; cor=; Ncor= a 0 216.0 47.0 764.0 0.0 1559.0 1.0 1.0 0.0 0.0 0.0 0.0 651.0 0 c 0 779.0 6.0 63.0 1559.0 0.0 1559.0 0.0 7.0 0.0 1559.0 1559.0 153.0 0 g 0 30.0 1559.0 1559.0 0.0 1.0 0.0 1559.0 0.0 1559.0 14.0 1.0 475.0 0 t 0 535.0 1.0 0.0 0.0 0.0 1.0 0.0 1559.0 0.0 267.0 14.0 279.0 0

MA0500.2_shift1 (MYOG)
; oligos_6nt_mkv3_m22 versus MA0500.2 (MYOG); m=13/40; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.695953; -sarCAGCTGyts- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0

MA1559.1_rc_shift2 (SNAI3_rc)
; oligos_6nt_mkv3_m22 versus MA1559.1_rc (SNAI3_rc); m=14/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.695124; --trCACCTGyt-- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; oligos_6nt_mkv3_m22 versus MA0521.1_rc (Tcf12_rc); m=15/40; ncol2=11; w=11; offset=0; strand=R; shift=1; score=0.667131; -cwsCAGCTGYy-- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0

MA1100.2_rc_shift2 (ASCL1_rc)
; oligos_6nt_mkv3_m22 versus MA1100.2_rc (ASCL1_rc); m=16/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.651189; --rgCAGCTGyy-- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0

MA0147.3_shift1 (MYC)
; oligos_6nt_mkv3_m22 versus MA0147.3 (MYC); m=17/40; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.647091; -ssCCACGTGcys- ; cor=; Ncor= a 0 1038.0 1019.0 438.0 44.0 4600.0 54.0 169.0 59.0 23.0 419.0 961.0 755.0 0 c 0 1345.0 1287.0 3746.0 4840.0 59.0 4525.0 157.0 162.0 56.0 2801.0 1524.0 1785.0 0 g 0 1649.0 1757.0 472.0 31.0 170.0 70.0 4578.0 63.0 4817.0 1198.0 1036.0 1348.0 0 t 0 910.0 879.0 286.0 27.0 113.0 293.0 38.0 4658.0 46.0 524.0 1421.0 1054.0 0

MA0820.1_shift2 (FIGLA)
; oligos_6nt_mkv3_m22 versus MA0820.1 (FIGLA); m=18/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.624436; --wmCACCTGkw-- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0

MA0816.1_shift2 (Ascl2)
; oligos_6nt_mkv3_m22 versus MA0816.1 (Ascl2); m=19/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.598514; --arCAGCTGyy-- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA0048.2_shift2 (NHLH1)
; oligos_6nt_mkv3_m22 versus MA0048.2 (NHLH1); m=20/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.598166; --cGCAGCTGCk-- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0

MA0616.2_rc_shift2 (HES2_rc)
; oligos_6nt_mkv3_m22 versus MA0616.2_rc (HES2_rc); m=21/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.588679; --grCACGTGcC-- ; cor=; Ncor= a 0 0 1319.0 3849.0 0.0 8483.0 0.0 129.0 0.0 73.0 1581.0 798.0 0 0 c 0 0 1735.0 1289.0 8483.0 0.0 8483.0 0.0 2028.0 85.0 8483.0 8483.0 0 0 g 0 0 4464.0 4634.0 15.0 1098.0 0.0 8483.0 0.0 8483.0 1107.0 1193.0 0 0 t 0 0 966.0 512.0 53.0 0.0 0.0 0.0 6455.0 118.0 1501.0 775.0 0 0

MA0823.1_shift2 (HEY1)
; oligos_6nt_mkv3_m22 versus MA0823.1 (HEY1); m=22/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.583058; --grCACGTGyc-- ; cor=; Ncor= a 0 0 437.0 1373.0 1.0 3338.0 0.0 0.0 0.0 32.0 333.0 475.0 0 0 c 0 0 761.0 656.0 3338.0 30.0 3338.0 18.0 474.0 19.0 1762.0 2172.0 0 0 g 0 0 1788.0 1199.0 3.0 123.0 0.0 3338.0 10.0 3338.0 380.0 373.0 0 0 t 0 0 352.0 110.0 15.0 21.0 0.0 0.0 3338.0 22.0 863.0 318.0 0 0

MA0649.1_rc_shift2 (HEY2_rc)
; oligos_6nt_mkv3_m22 versus MA0649.1_rc (HEY2_rc); m=23/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.582118; --grCACGTGyC-- ; cor=; Ncor= a 0 0 264.0 753.0 30.0 1800.0 0.0 0.0 0.0 58.0 224.0 101.0 0 0 c 0 0 382.0 128.0 1800.0 0.0 1800.0 0.0 128.0 83.0 620.0 1800.0 0 0 g 0 0 869.0 1047.0 34.0 120.0 72.0 1800.0 0.0 1800.0 305.0 99.0 0 0 t 0 0 285.0 50.0 0.0 36.0 27.0 7.0 1800.0 84.0 651.0 107.0 0 0

MA1560.1_shift2 (SOHLH2)
; oligos_6nt_mkv3_m22 versus MA1560.1 (SOHLH2); m=24/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.572264; --ygCACGTGcr-- ; cor=; Ncor= a 0 0 230.0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 381.0 0 0 c 0 0 485.0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 239.0 0 0 g 0 0 184.0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 369.0 0 0 t 0 0 313.0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0 224.0 0 0

MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; oligos_6nt_mkv3_m22 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=25/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.566058; --csCAGCTGsg-- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0

MA0464.2_shift2 (BHLHE40)
; oligos_6nt_mkv3_m22 versus MA0464.2 (BHLHE40); m=26/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.563157; --vkCACGTGmc-- ; cor=; Ncor= a 0 0 3824.0 1391.0 59.0 11222.0 23.0 66.0 167.0 4.0 5927.0 1544.0 0 0 c 0 0 3025.0 481.0 11222.0 130.0 11222.0 30.0 248.0 12.0 5295.0 5706.0 0 0 g 0 0 2926.0 5000.0 0.0 78.0 2.0 11222.0 87.0 11222.0 129.0 1385.0 0 0 t 0 0 1447.0 6222.0 14.0 77.0 32.0 0.0 11222.0 72.0 500.0 2587.0 0 0

MA0825.1_shift2 (MNT)
; oligos_6nt_mkv3_m22 versus MA0825.1 (MNT); m=27/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.562421; --avCACGTGcy-- ; cor=; Ncor= a 0 0 279.0 187.0 27.0 681.0 0.0 15.0 0.0 0.0 150.0 159.0 0 0 c 0 0 128.0 228.0 681.0 0.0 681.0 0.0 0.0 0.0 281.0 229.0 0 0 g 0 0 145.0 203.0 0.0 0.0 7.0 681.0 15.0 681.0 131.0 75.0 0 0 t 0 0 129.0 63.0 5.0 21.0 16.0 0.0 681.0 25.0 120.0 219.0 0 0

MA0058.3_shift2 (MAX)
; oligos_6nt_mkv3_m22 versus MA0058.3 (MAX); m=28/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.553388; --amCACGTGcy-- ; cor=; Ncor= a 0 0 3307.0 1915.0 39.0 6876.0 0.0 329.0 69.0 0.0 1341.0 1122.0 0 0 c 0 0 1556.0 2809.0 6876.0 0.0 6876.0 39.0 159.0 27.0 2450.0 2225.0 0 0 g 0 0 1295.0 1514.0 0.0 87.0 7.0 6876.0 20.0 6876.0 1638.0 986.0 0 0 t 0 0 719.0 637.0 0.0 38.0 229.0 19.0 6876.0 36.0 1446.0 2543.0 0 0

MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)
; oligos_6nt_mkv3_m22 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=29/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.550766; --rrCAGCTGbt-- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0

MA0100.3_shift2 (MYB)
; oligos_6nt_mkv3_m22 versus MA0100.3 (MYB); m=30/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.549836; --mbCAACTGhm-- ; cor=; Ncor= a 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 c 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 g 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 t 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0

MA1464.1_rc_shift2 (ARNT2_rc)
; oligos_6nt_mkv3_m22 versus MA1464.1_rc (ARNT2_rc); m=31/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.546842; --skCACGTGay-- ; cor=; Ncor= a 0 0 8251.0 7159.0 971.0 40622.0 0.0 148.0 460.0 0.0 40622.0 1951.0 0 0 c 0 0 12031.0 3912.0 40622.0 111.0 40622.0 0.0 532.0 115.0 9525.0 28841.0 0 0 g 0 0 12448.0 22063.0 0.0 932.0 0.0 40622.0 122.0 40622.0 4901.0 4265.0 0 0 t 0 0 7892.0 18559.0 14.0 651.0 84.0 0.0 40622.0 505.0 9572.0 11781.0 0 0

MA0626.1_shift2 (Npas2)
; oligos_6nt_mkv3_m22 versus MA0626.1 (Npas2); m=32/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.546681; --dsCACGTGtm-- ; cor=; Ncor= a 0 0 273.0 154.0 0.0 999.0 81.0 81.0 0.0 81.0 74.0 297.0 0 0 c 0 0 177.0 377.0 999.0 0.0 918.0 0.0 0.0 0.0 172.0 299.0 0 0 g 0 0 293.0 420.0 0.0 0.0 0.0 918.0 0.0 918.0 188.0 202.0 0 0 t 0 0 257.0 48.0 0.0 0.0 0.0 0.0 999.0 0.0 566.0 202.0 0 0

MA1108.2_shift2 (MXI1)
; oligos_6nt_mkv3_m22 versus MA1108.2 (MXI1); m=33/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.545709; --rvCACATGkc-- ; cor=; Ncor= a 0 0 5786.0 6184.0 109.0 21870.0 10.0 20506.0 0.0 527.0 2833.0 4945.0 0 0 c 0 0 4724.0 5841.0 21382.0 1.0 21552.0 0.0 507.0 114.0 5329.0 6343.0 0 0 g 0 0 6326.0 6078.0 97.0 170.0 18.0 1542.0 0.0 21232.0 7228.0 5394.0 0 0 t 0 0 5212.0 3945.0 460.0 7.0 468.0 0.0 21541.0 175.0 6658.0 5366.0 0 0

MA1493.1_rc_shift2 (HES6_rc)
; oligos_6nt_mkv3_m22 versus MA1493.1_rc (HES6_rc); m=34/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.545414; --rACACGTGCC-- ; cor=; Ncor= a 0 0 209.0 439.0 0.0 439.0 0.0 16.0 11.0 15.0 13.0 43.0 0 0 c 0 0 0.0 0.0 439.0 29.0 439.0 9.0 9.0 19.0 439.0 439.0 0 0 g 0 0 152.0 21.0 0.0 7.0 12.0 439.0 0.0 439.0 35.0 39.0 0 0 t 0 0 79.0 33.0 0.0 0.0 10.0 2.0 439.0 17.0 16.0 12.0 0 0

MA1099.2_rc_shift2 (HES1_rc)
; oligos_6nt_mkv3_m22 versus MA1099.2_rc (HES1_rc); m=35/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.540258; --gvCACGyGcc-- ; cor=; Ncor= a 0 0 3216.0 4837.0 53.0 18526.0 0.0 791.0 232.0 18.0 8007.0 4239.0 0 0 c 0 0 6013.0 6360.0 18526.0 0.0 18526.0 0.0 9081.0 0.0 18526.0 18526.0 0 0 g 0 0 12513.0 6203.0 0.0 4057.0 0.0 18526.0 0.0 18526.0 2072.0 3492.0 0 0 t 0 0 2742.0 1126.0 1.0 253.0 21.0 0.0 9446.0 464.0 5858.0 3321.0 0 0

MA0807.1_rc_shift1 (TBX5_rc)
; oligos_6nt_mkv3_m22 versus MA0807.1_rc (TBX5_rc); m=36/40; ncol2=8; w=8; offset=0; strand=R; shift=1; score=0.484541; -TmACACCT----- ; cor=; Ncor= a 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 c 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 g 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 t 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0

MA0806.1_rc_shift1 (TBX4_rc)
; oligos_6nt_mkv3_m22 versus MA0806.1_rc (TBX4_rc); m=37/40; ncol2=8; w=8; offset=0; strand=R; shift=1; score=0.476752; -TcACACCT----- ; cor=; Ncor= a 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 0 c 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 0 g 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 0 t 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0 0

MA0803.1_rc_shift1 (TBX15_rc)
; oligos_6nt_mkv3_m22 versus MA0803.1_rc (TBX15_rc); m=38/40; ncol2=8; w=8; offset=0; strand=R; shift=1; score=0.447663; -TCACACCT----- ; cor=; Ncor= a 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 0 0 0 0 c 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 0 0 0 0 g 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 0 0 0 0 t 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0 0 0 0 0

MA0622.1_shift3 (Mlxip)
; oligos_6nt_mkv3_m22 versus MA0622.1 (Mlxip); m=39/40; ncol2=8; w=8; offset=2; strand=D; shift=3; score=0.438609; ---bCACGTGk--- ; cor=; Ncor= a 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 0 0 0 c 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 0 0 0 g 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 0 0 0 t 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0 0 0 0

MA0805.1_rc_shift1 (TBX1_rc)
; oligos_6nt_mkv3_m22 versus MA0805.1_rc (TBX1_rc); m=40/40; ncol2=8; w=8; offset=0; strand=R; shift=1; score=0.434157; -TCACACCT----- ; cor=; Ncor= a 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 0 0 c 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 0 0 g 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 0 0 t 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m7_shift2 ; 36 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m7_shift2 (oligos_6nt_mkv3_m7oligos_6nt_mkv3_m7)
; oligos_6nt_mkv3_m7 (oligos_6nt_mkv3_m7oligos_6nt_mkv3_m7); m=0 (reference); ncol1=10; shift=2; ncol=14; --rvCAACTGyy-- ; Alignment reference a 0 0 207 175 0 590 590 0 0 0 68 118 0 0 c 0 0 86 189 590 0 0 590 0 0 193 160 0 0 g 0 0 225 175 0 0 0 0 0 590 143 138 0 0 t 0 0 72 51 0 0 0 0 590 0 186 174 0 0

MA0100.3_shift2 (MYB)
; oligos_6nt_mkv3_m7 versus MA0100.3 (MYB); m=1/35; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.978377; --mbCAACTGhm-- ; cor=; Ncor= a 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 c 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 g 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 t 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0

MA1472.1_shift2 (BHLHA15(var.2))
; oligos_6nt_mkv3_m7 versus MA1472.1 (BHLHA15(var.2)); m=2/35; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.781424; --avCAGCTGyy-- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0

MA1100.2_shift2 (ASCL1)
; oligos_6nt_mkv3_m7 versus MA1100.2 (ASCL1); m=3/35; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.776199; --rrCAGCTGcy-- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; oligos_6nt_mkv3_m7 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=4/35; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.77025; --csCAGCTGsg-- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0

MA0820.1_shift2 (FIGLA)
; oligos_6nt_mkv3_m7 versus MA0820.1 (FIGLA); m=5/35; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.769443; --wmCACCTGkw-- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0

MA1638.1_rc_shift2 (HAND2_rc)
; oligos_6nt_mkv3_m7 versus MA1638.1_rc (HAND2_rc); m=6/35; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.76865; --rvCATCTGkt-- ; cor=; Ncor= a 0 0 7783.0 8498.0 49.0 27962.0 23.0 85.0 4.0 70.0 3155.0 7120.0 0 0 c 0 0 6108.0 8878.0 29851.0 31.0 38.0 30144.0 647.0 132.0 6994.0 7463.0 0 0 g 0 0 10227.0 7690.0 149.0 2276.0 30.0 42.0 410.0 30062.0 11298.0 5564.0 0 0 t 0 0 6165.0 5217.0 234.0 14.0 30192.0 12.0 29222.0 19.0 8836.0 10136.0 0 0

MA0816.1_shift2 (Ascl2)
; oligos_6nt_mkv3_m7 versus MA0816.1 (Ascl2); m=7/35; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.766686; --arCAGCTGyy-- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA0667.1_shift2 (MYF6)
; oligos_6nt_mkv3_m7 versus MA0667.1 (MYF6); m=8/35; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.756606; --AACArCTGTY-- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0

MA1558.1_rc_shift2 (SNAI1_rc)
; oligos_6nt_mkv3_m7 versus MA1558.1_rc (SNAI1_rc); m=9/35; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.741229; --yrCACCTGyh-- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0

MA1467.1_rc_shift2 (ATOH1(var.2)_rc)
; oligos_6nt_mkv3_m7 versus MA1467.1_rc (ATOH1(var.2)_rc); m=10/35; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.731423; --RACAGCTGTT-- ; cor=; Ncor= a 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0

MA1559.1_rc_shift2 (SNAI3_rc)
; oligos_6nt_mkv3_m7 versus MA1559.1_rc (SNAI3_rc); m=11/35; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.719772; --trCACCTGyt-- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0

MA0048.2_shift2 (NHLH1)
; oligos_6nt_mkv3_m7 versus MA0048.2 (NHLH1); m=12/35; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.715866; --cGCAGCTGCk-- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0

MA0691.1_shift2 (TFAP4)
; oligos_6nt_mkv3_m7 versus MA0691.1 (TFAP4); m=13/35; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.709702; --AwCAGCTGwT-- ; cor=; Ncor= a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA0665.1_shift2 (MSC)
; oligos_6nt_mkv3_m7 versus MA0665.1 (MSC); m=14/35; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.703029; --AACAGCTGTT-- ; cor=; Ncor= a 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; oligos_6nt_mkv3_m7 versus MA0521.1_rc (Tcf12_rc); m=15/35; ncol2=11; w=10; offset=-1; strand=R; shift=1; score=0.699619; -cwsCAGCTGYy-- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0

MA0103.3_shift2 (ZEB1)
; oligos_6nt_mkv3_m7 versus MA0103.3 (ZEB1); m=16/35; ncol2=11; w=10; offset=0; strand=D; shift=2; score=0.684128; --ssCACCTGsss- ; cor=; Ncor= a 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 c 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 g 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 t 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0

MA1648.1_shift2 (TCF12(var.2))
; oligos_6nt_mkv3_m7 versus MA1648.1 (TCF12(var.2)); m=17/35; ncol2=11; w=10; offset=0; strand=D; shift=2; score=0.65613; --ssCACCTGCys- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0

MA0522.3_shift2 (TCF3)
; oligos_6nt_mkv3_m7 versus MA0522.3 (TCF3); m=18/35; ncol2=11; w=10; offset=0; strand=D; shift=2; score= 0.6542; --svCACCTGCss- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0

MA0500.2_rc_shift1 (MYOG_rc)
; oligos_6nt_mkv3_m7 versus MA0500.2_rc (MYOG_rc); m=19/35; ncol2=12; w=10; offset=-1; strand=R; shift=1; score=0.640837; -sarCAGCTGyts- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA1620.1_shift1 (Ptf1a(var.3))
; oligos_6nt_mkv3_m7 versus MA1620.1 (Ptf1a(var.3)); m=20/35; ncol2=12; w=10; offset=-1; strand=D; shift=1; score=0.634256; -rmaCACCTGtky- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0

MA1619.1_shift1 (Ptf1a(var.2))
; oligos_6nt_mkv3_m7 versus MA1619.1 (Ptf1a(var.2)); m=21/35; ncol2=12; w=10; offset=-1; strand=D; shift=1; score=0.632818; -rmaCAGCTGtky- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA1641.1_rc_shift1 (MYF5_rc)
; oligos_6nt_mkv3_m7 versus MA1641.1_rc (MYF5_rc); m=22/35; ncol2=12; w=10; offset=-1; strand=R; shift=1; score=0.62678; -gvaCAGCTGtbc- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0

MA1524.1_shift1 (MSGN1)
; oligos_6nt_mkv3_m7 versus MA1524.1 (MSGN1); m=23/35; ncol2=12; w=10; offset=-1; strand=D; shift=1; score=0.593119; -srCCAwwTGkys- ; cor=; Ncor= a 0 1190.0 3096.0 663.0 0.0 6373.0 2424.0 3766.0 10.0 0.0 412.0 514.0 1388.0 0 c 0 2080.0 576.0 6373.0 6373.0 0.0 627.0 190.0 287.0 10.0 1132.0 3269.0 1976.0 0 g 0 1615.0 3277.0 1613.0 17.0 374.0 112.0 814.0 17.0 6373.0 3104.0 1503.0 1781.0 0 t 0 1488.0 408.0 726.0 0.0 0.0 3950.0 2607.0 6373.0 0.0 3269.0 3104.0 1228.0 0

MA1618.1_rc_shift0 (Ptf1a_rc)
; oligos_6nt_mkv3_m7 versus MA1618.1_rc (Ptf1a_rc); m=24/35; ncol2=13; w=10; offset=-2; strand=R; shift=0; score=0.592088; dmaaCATCTGtkh- ; cor=; Ncor= a 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 c 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 g 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 t 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0

MA0091.1_shift0 (TAL1::TCF3)
; oligos_6nt_mkv3_m7 versus MA0091.1 (TAL1::TCF3); m=25/35; ncol2=12; w=10; offset=-2; strand=D; shift=0; score=0.59143; mgAmCAKMTGkT-- ; cor=; Ncor= a 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 c 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 g 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 t 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0

MA1642.1_rc_shift1 (NEUROG2(var.2)_rc)
; oligos_6nt_mkv3_m7 versus MA1642.1_rc (NEUROG2(var.2)_rc); m=26/35; ncol2=13; w=10; offset=-1; strand=R; shift=1; score=0.579397; -brCCATCTGtyyy ; cor=; Ncor= a 0 7184.0 9704.0 4904.0 484.0 32515.0 275.0 2806.0 159.0 237.0 1750.0 4721.0 8378.0 7535.0 c 0 8709.0 7581.0 24998.0 33422.0 323.0 418.0 30392.0 301.0 317.0 8039.0 11114.0 10123.0 10813.0 g 0 9034.0 10441.0 2966.0 205.0 904.0 952.0 793.0 211.0 33559.0 8154.0 6467.0 6843.0 7353.0 t 0 9464.0 6665.0 1523.0 280.0 649.0 32746.0 400.0 33720.0 278.0 16448.0 12089.0 9047.0 8690.0

MA0830.2_shift1 (TCF4)
; oligos_6nt_mkv3_m7 versus MA0830.2 (TCF4); m=27/35; ncol2=13; w=10; offset=-1; strand=D; shift=1; score=0.577526; -cggCACCTGccss ; cor=; Ncor= a 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 c 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 g 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 t 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0

MA1109.1_rc_shift0 (NEUROD1_rc)
; oligos_6nt_mkv3_m7 versus MA1109.1_rc (NEUROD1_rc); m=28/35; ncol2=13; w=10; offset=-2; strand=R; shift=0; score=0.577185; syrCCATCTGtyc- ; cor=; Ncor= a 525.0 451.0 580.0 168.0 31.0 2157.0 21.0 90.0 18.0 12.0 47.0 298.0 566.0 0 c 628.0 599.0 418.0 1962.0 2231.0 19.0 77.0 2152.0 16.0 13.0 494.0 906.0 726.0 0 g 591.0 540.0 911.0 93.0 7.0 51.0 150.0 24.0 7.0 2240.0 452.0 323.0 429.0 0 t 538.0 692.0 373.0 59.0 13.0 55.0 2034.0 16.0 2241.0 17.0 1289.0 755.0 561.0 0

MA0499.2_shift1 (MYOD1)
; oligos_6nt_mkv3_m7 versus MA0499.2 (MYOD1); m=29/35; ncol2=13; w=10; offset=-1; strand=D; shift=1; score=0.575004; -cwgCACCTGTymy ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0

MA1631.1_shift1 (ASCL1(var.2))
; oligos_6nt_mkv3_m7 versus MA1631.1 (ASCL1(var.2)); m=30/35; ncol2=13; w=10; offset=-1; strand=D; shift=1; score=0.571687; -cdgCACCTGCysc ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0

MA1123.2_rc_shift1 (TWIST1_rc)
; oligos_6nt_mkv3_m7 versus MA1123.2_rc (TWIST1_rc); m=31/35; ncol2=13; w=10; offset=-1; strand=R; shift=1; score=0.562265; -avaCATCTGGwwt ; cor=; Ncor= a 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 c 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 g 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 t 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0

MA0745.2_shift1 (SNAI2)
; oligos_6nt_mkv3_m7 versus MA0745.2 (SNAI2); m=32/35; ncol2=13; w=10; offset=-1; strand=D; shift=1; score=0.559898; -aygCACCTGTmry ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0

MA1485.1_shift0 (FERD3L)
; oligos_6nt_mkv3_m7 versus MA1485.1 (FERD3L); m=33/35; ncol2=14; w=10; offset=-2; strand=D; shift=0; score=0.546849; GyrmCAGCTGTyAC ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0

MA1621.1_shift0 (Rbpjl)
; oligos_6nt_mkv3_m7 versus MA1621.1 (Rbpjl); m=34/35; ncol2=14; w=10; offset=-2; strand=D; shift=0; score=0.543627; svmaCACCTGtsyc ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0

MA1554.1_rc_shift0 (RFX7_rc)
; oligos_6nt_mkv3_m7 versus MA1554.1_rc (RFX7_rc); m=35/35; ncol2=9; w=7; offset=-2; strand=R; shift=0; score=0.409688; rtrGcAACg----- ; cor=; Ncor= a 109.0 27.0 164.0 19.0 38.0 279.0 279.0 0.0 58.0 0 0 0 0 0 c 27.0 104.0 13.0 35.0 279.0 0.0 0.0 279.0 63.0 0 0 0 0 0 g 106.0 22.0 115.0 279.0 0.0 27.0 24.0 2.0 164.0 0 0 0 0 0 t 37.0 279.0 0.0 2.0 95.0 0.0 0.0 0.0 0.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m18_shift0 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m18_shift0 (oligos_6nt_mkv3_m18oligos_6nt_mkv3_m18)
; oligos_6nt_mkv3_m18 (oligos_6nt_mkv3_m18oligos_6nt_mkv3_m18); m=0 (reference); ncol1=12; shift=0; ncol=18; yymCATTCCAkt------ ; Alignment reference a 63 63 302 11 440 2 11 7 2 334 64 82 0 0 0 0 0 0 c 125 155 126 400 3 3 7 434 441 34 90 102 0 0 0 0 0 0 g 86 68 15 14 8 4 4 1 0 13 123 101 0 0 0 0 0 0 t 179 167 10 28 2 444 431 11 10 72 176 168 0 0 0 0 0 0

MA0809.2_shift0 (TEAD4)
; oligos_6nt_mkv3_m18 versus MA0809.2 (TEAD4); m=1/8; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.972595; ycACATTCCAgs------ ; cor=; Ncor= a 18932.0 17306.0 61263.0 7543.0 74797.0 965.0 2673.0 1366.0 1314.0 61802.0 16617.0 19272.0 0 0 0 0 0 0 c 22343.0 26577.0 2414.0 66205.0 1218.0 1129.0 1176.0 72555.0 75066.0 3874.0 13864.0 20301.0 0 0 0 0 0 0 g 15111.0 15427.0 11265.0 3295.0 569.0 1025.0 2100.0 1580.0 212.0 1191.0 32220.0 22630.0 0 0 0 0 0 0 t 21700.0 18776.0 3144.0 1043.0 1502.0 74967.0 72137.0 2585.0 1494.0 11219.0 15385.0 15883.0 0 0 0 0 0 0

MA1121.1_shift0 (TEAD2)
; oligos_6nt_mkv3_m18 versus MA1121.1 (TEAD2); m=2/8; ncol2=13; w=12; offset=0; strand=D; shift=0; score=0.890023; hcACATTCCwgsc----- ; cor=; Ncor= a 137.0 88.0 441.0 39.0 517.0 2.0 15.0 8.0 8.0 263.0 112.0 111.0 109.0 0 0 0 0 0 c 145.0 238.0 17.0 478.0 5.0 10.0 8.0 500.0 513.0 60.0 111.0 172.0 221.0 0 0 0 0 0 g 112.0 81.0 70.0 14.0 11.0 6.0 9.0 10.0 3.0 56.0 207.0 147.0 117.0 0 0 0 0 0 t 148.0 135.0 14.0 11.0 9.0 524.0 510.0 24.0 18.0 163.0 112.0 112.0 95.0 0 0 0 0 0

MA0090.3_shift0 (TEAD1)
; oligos_6nt_mkv3_m18 versus MA0090.3 (TEAD1); m=3/8; ncol2=13; w=12; offset=0; strand=D; shift=0; score=0.875101; hyACATTCCAGsm----- ; cor=; Ncor= a 17689.0 16651.0 58030.0 6096.0 68106.0 535.0 4976.0 1348.0 702.0 57190.0 9124.0 13252.0 19194.0 0 0 0 0 0 c 19272.0 22059.0 1248.0 61276.0 646.0 700.0 622.0 66953.0 67635.0 1729.0 6215.0 20002.0 21358.0 0 0 0 0 0 g 14429.0 12053.0 9179.0 1923.0 946.0 646.0 1210.0 765.0 374.0 2051.0 47856.0 26525.0 16344.0 0 0 0 0 0 t 19008.0 19635.0 1941.0 1103.0 700.0 68517.0 63590.0 1332.0 1687.0 9428.0 7203.0 10619.0 13502.0 0 0 0 0 0

MA0808.1_shift2 (TEAD3)
; oligos_6nt_mkv3_m18 versus MA0808.1 (TEAD3); m=4/8; ncol2=8; w=8; offset=2; strand=D; shift=2; score=0.634584; --rCATTCCw-------- ; cor=; Ncor= a 0 0 12530.0 2524.0 21444.0 0.0 4566.0 0.0 0.0 21444.0 0 0 0 0 0 0 0 0 c 0 0 66.0 18920.0 0.0 0.0 23.0 21444.0 21444.0 1039.0 0 0 0 0 0 0 0 0 g 0 0 8913.0 441.0 0.0 0.0 969.0 0.0 0.0 8654.0 0 0 0 0 0 0 0 0 t 0 0 1109.0 0.0 0.0 21444.0 16878.0 0.0 4.0 13663.0 0 0 0 0 0 0 0 0

MA0624.1_shift2 (NFATC1)
; oligos_6nt_mkv3_m18 versus MA0624.1 (NFATC1); m=5/8; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.611846; --wttTTCCryt------ ; cor=; Ncor= a 0 0 383.0 226.0 158.0 19.0 21.0 14.0 9.0 516.0 230.0 230.0 0 0 0 0 0 0 c 0 0 134.0 193.0 60.0 35.0 29.0 971.0 967.0 45.0 262.0 227.0 0 0 0 0 0 0 g 0 0 167.0 189.0 122.0 7.0 15.0 8.0 5.0 357.0 126.0 194.0 0 0 0 0 0 0 t 0 0 316.0 392.0 660.0 939.0 935.0 7.0 18.0 83.0 383.0 349.0 0 0 0 0 0 0

MA0625.1_shift2 (NFATC3)
; oligos_6nt_mkv3_m18 versus MA0625.1 (NFATC3); m=6/8; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.590172; --wtTTTCCryt------ ; cor=; Ncor= a 0 0 421.0 179.0 117.0 14.0 3.0 36.0 8.0 552.0 173.0 215.0 0 0 0 0 0 0 c 0 0 93.0 181.0 40.0 10.0 23.0 933.0 959.0 39.0 251.0 211.0 0 0 0 0 0 0 g 0 0 139.0 168.0 73.0 5.0 9.0 1.0 23.0 342.0 133.0 173.0 0 0 0 0 0 0 t 0 0 348.0 472.0 770.0 971.0 966.0 30.0 10.0 67.0 443.0 400.0 0 0 0 0 0 0

MA1525.1_rc_shift2 (NFATC4_rc)
; oligos_6nt_mkv3_m18 versus MA1525.1_rc (NFATC4_rc); m=7/8; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.589689; --wkTTTCCryt------ ; cor=; Ncor= a 0 0 2239.0 1292.0 259.0 0.0 0.0 0.0 0.0 2816.0 843.0 819.0 0 0 0 0 0 0 c 0 0 348.0 1789.0 127.0 0.0 0.0 4349.0 4349.0 0.0 2369.0 963.0 0 0 0 0 0 0 g 0 0 632.0 3276.0 1084.0 0.0 39.0 0.0 0.0 1534.0 329.0 916.0 0 0 0 0 0 0 t 0 0 1132.0 4349.0 4349.0 4349.0 4349.0 0.0 0.0 95.0 4349.0 1652.0 0 0 0 0 0 0

MA0752.1_shift1 (ZNF410)
; oligos_6nt_mkv3_m18 versus MA0752.1 (ZNF410); m=8/8; ncol2=17; w=11; offset=1; strand=D; shift=1; score=0.428845; -tmCATCCCATAATAhtc ; cor=; Ncor= a 0 661.0 1715.0 1.0 3985.0 50.0 69.0 12.0 0.0 3985.0 0.0 3987.0 3983.0 4.0 3930.0 1069.0 172.0 798.0 c 0 700.0 1872.0 3641.0 2.0 33.0 3949.0 3986.0 3986.0 5.0 9.0 8.0 2.0 6.0 17.0 1285.0 818.0 2628.0 g 0 950.0 399.0 0.0 1.0 124.0 1.0 0.0 1.0 1.0 0.0 0.0 3.0 0.0 43.0 619.0 788.0 93.0 t 0 1677.0 2.0 370.0 4.0 3827.0 4.0 0.0 0.0 2.0 3987.0 0.0 1.0 3984.0 24.0 1015.0 2274.0 520.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m45_shift4 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m45_shift4 (oligos_6nt_mkv3_m45oligos_6nt_mkv3_m45)
; oligos_6nt_mkv3_m45 (oligos_6nt_mkv3_m45oligos_6nt_mkv3_m45); m=0 (reference); ncol1=10; shift=4; ncol=17; ----krGGATTAvr--- ; Alignment reference a 0 0 0 0 37 39 0 4 150 2 1 152 40 44 0 0 0 c 0 0 0 0 34 18 7 1 0 1 0 2 40 34 0 0 0 g 0 0 0 0 39 67 146 142 1 0 1 0 51 47 0 0 0 t 0 0 0 0 44 30 1 7 3 151 152 0 23 29 0 0 0

MA0648.1_rc_shift4 (GSC_rc)
; oligos_6nt_mkv3_m45 versus MA0648.1_rc (GSC_rc); m=1/19; ncol2=10; w=10; offset=0; strand=R; shift=4; score=0.967516; ----rsGGATTArs--- ; cor=; Ncor= a 0 0 0 0 2168.0 1115.0 1099.0 787.0 6081.0 0.0 89.0 6081.0 1688.0 882.0 0 0 0 c 0 0 0 0 619.0 1732.0 828.0 452.0 144.0 0.0 176.0 0.0 553.0 2039.0 0 0 0 g 0 0 0 0 2197.0 2398.0 6081.0 6081.0 25.0 0.0 71.0 54.0 2885.0 1912.0 0 0 0 t 0 0 0 0 1097.0 836.0 315.0 416.0 0.0 6081.0 6081.0 0.0 955.0 1249.0 0 0 0

MA0891.1_rc_shift4 (GSC2_rc)
; oligos_6nt_mkv3_m45 versus MA0891.1_rc (GSC2_rc); m=2/19; ncol2=10; w=10; offset=0; strand=R; shift=4; score=0.962215; ----dsgGATTArg--- ; cor=; Ncor= a 0 0 0 0 525.0 444.0 439.0 204.0 2016.0 132.0 201.0 2016.0 630.0 427.0 0 0 0 c 0 0 0 0 168.0 698.0 422.0 179.0 145.0 0.0 56.0 0.0 190.0 442.0 0 0 0 g 0 0 0 0 814.0 668.0 2016.0 2016.0 41.0 11.0 87.0 0.0 839.0 686.0 0 0 0 t 0 0 0 0 509.0 205.0 182.0 255.0 0.0 2016.0 2016.0 116.0 356.0 461.0 0 0 0

MA0714.1_rc_shift5 (PITX3_rc)
; oligos_6nt_mkv3_m45 versus MA0714.1_rc (PITX3_rc); m=3/19; ncol2=9; w=9; offset=1; strand=R; shift=5; score=0.883454; -----gGGATTArb--- ; cor=; Ncor= a 0 0 0 0 0 1195.0 968.0 236.0 6253.0 0.0 158.0 6253.0 3354.0 1069.0 0 0 0 c 0 0 0 0 0 970.0 239.0 166.0 1101.0 15.0 260.0 9.0 806.0 1634.0 0 0 0 g 0 0 0 0 0 2950.0 6253.0 6253.0 138.0 0.0 32.0 51.0 2899.0 1924.0 0 0 0 t 0 0 0 0 0 1138.0 227.0 318.0 262.0 6253.0 6253.0 493.0 1602.0 1626.0 0 0 0

MA0712.2_shift3 (OTX2)
; oligos_6nt_mkv3_m45 versus MA0712.2 (OTX2); m=4/19; ncol2=12; w=10; offset=-1; strand=D; shift=3; score=0.825178; ---wdrGGATTAraw-- ; cor=; Ncor= a 0 0 0 42531.0 39166.0 37155.0 5435.0 2918.0 116411.0 765.0 1913.0 114798.0 30848.0 39802.0 36006.0 0 0 c 0 0 0 24445.0 17328.0 5322.0 827.0 1620.0 2220.0 598.0 1771.0 636.0 12347.0 25479.0 20623.0 0 0 g 0 0 0 22124.0 31825.0 55814.0 111741.0 113842.0 706.0 787.0 1407.0 1302.0 52479.0 27153.0 29814.0 0 0 t 0 0 0 31579.0 32360.0 22388.0 2676.0 2299.0 1342.0 118529.0 115588.0 3943.0 25005.0 28245.0 34236.0 0 0

MA0682.2_rc_shift5 (PITX1_rc)
; oligos_6nt_mkv3_m45 versus MA0682.2_rc (PITX1_rc); m=5/19; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.795587; -----gGGATTAr---- ; cor=; Ncor= a 0 0 0 0 0 2113.0 547.0 141.0 10531.0 0.0 0.0 10531.0 4432.0 0 0 0 0 c 0 0 0 0 0 1876.0 134.0 0.0 1039.0 0.0 0.0 0.0 2382.0 0 0 0 0 g 0 0 0 0 0 4194.0 10531.0 10531.0 0.0 0.0 0.0 0.0 6099.0 0 0 0 0 t 0 0 0 0 0 2348.0 68.0 143.0 0.0 10531.0 10531.0 0.0 2898.0 0 0 0 0

MA1547.1_rc_shift5 (PITX2_rc)
; oligos_6nt_mkv3_m45 versus MA1547.1_rc (PITX2_rc); m=6/19; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.793292; -----gGGATTAd---- ; cor=; Ncor= a 0 0 0 0 0 1371.0 364.0 1455.0 10956.0 0.0 0.0 10956.0 5436.0 0 0 0 0 c 0 0 0 0 0 1692.0 248.0 0.0 147.0 0.0 17.0 0.0 4140.0 0 0 0 0 g 0 0 0 0 0 5773.0 10956.0 10956.0 0.0 0.0 0.0 0.0 5519.0 0 0 0 0 t 0 0 0 0 0 2119.0 197.0 0.0 0.0 10956.0 10956.0 259.0 6050.0 0 0 0 0

MA0711.1_rc_shift5 (OTX1_rc)
; oligos_6nt_mkv3_m45 versus MA0711.1_rc (OTX1_rc); m=7/19; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.765421; -----sgGATTAr---- ; cor=; Ncor= a 0 0 0 0 0 4787.0 3363.0 378.0 23441.0 0.0 544.0 23441.0 8636.0 0 0 0 0 c 0 0 0 0 0 10599.0 8662.0 659.0 3160.0 0.0 254.0 0.0 3186.0 0 0 0 0 g 0 0 0 0 0 6182.0 23441.0 23441.0 0.0 0.0 0.0 90.0 6501.0 0 0 0 0 t 0 0 0 0 0 1873.0 789.0 647.0 243.0 23441.0 23441.0 745.0 5118.0 0 0 0 0

MA0719.1_rc_shift5 (RHOXF1_rc)
; oligos_6nt_mkv3_m45 versus MA0719.1_rc (RHOXF1_rc); m=8/19; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.710668; -----kGGmTyAw---- ; cor=; Ncor= a 0 0 0 0 0 2123.0 2275.0 0.0 7376.0 0.0 1367.0 10916.0 3193.0 0 0 0 0 c 0 0 0 0 0 2117.0 0.0 0.0 3540.0 0.0 5373.0 478.0 1855.0 0 0 0 0 g 0 0 0 0 0 3453.0 10916.0 10916.0 0.0 0.0 0.0 0.0 2644.0 0 0 0 0 t 0 0 0 0 0 3223.0 0.0 0.0 0.0 10916.0 5543.0 2837.0 3224.0 0 0 0 0

MA1480.1_rc_shift5 (DPRX_rc)
; oligos_6nt_mkv3_m45 versus MA1480.1_rc (DPRX_rc); m=9/19; ncol2=10; w=9; offset=1; strand=R; shift=5; score=0.707712; -----srGATTAkCt-- ; cor=; Ncor= a 0 0 0 0 0 1802.0 3231.0 350.0 8562.0 0.0 1071.0 8562.0 370.0 437.0 945.0 0 0 c 0 0 0 0 0 2269.0 754.0 222.0 198.0 0.0 1121.0 0.0 110.0 8562.0 1509.0 0 0 g 0 0 0 0 0 2970.0 8562.0 8562.0 0.0 0.0 1730.0 0.0 2761.0 1011.0 1411.0 0 0 t 0 0 0 0 0 1521.0 303.0 1014.0 0.0 8562.0 8562.0 0.0 5801.0 936.0 4696.0 0 0

MA0467.1_shift2 (Crx)
; oligos_6nt_mkv3_m45 versus MA0467.1 (Crx); m=10/19; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.688985; --aAGrGGATTAr---- ; cor=; Ncor= a 0 0 1207.0 1454.0 347.0 943.0 515.0 0.0 1632.0 0.0 0.0 1995.0 544.0 0 0 0 0 c 0 0 297.0 43.0 55.0 222.0 0.0 0.0 465.0 0.0 29.0 0.0 52.0 0 0 0 0 g 0 0 458.0 417.0 1470.0 823.0 1574.0 2097.0 0.0 0.0 0.0 0.0 1326.0 0 0 0 0 t 0 0 135.0 183.0 225.0 109.0 8.0 0.0 0.0 2097.0 2068.0 102.0 175.0 0 0 0 0

MA0035.4_rc_shift4 (GATA1_rc)
; oligos_6nt_mkv3_m45 versus MA0035.4_rc (GATA1_rc); m=11/19; ncol2=11; w=10; offset=0; strand=R; shift=4; score=0.654707; ----wwAGATWAGaw-- ; cor=; Ncor= a 0 0 0 0 24586.0 19739.0 60641.0 1853.0 67766.0 1998.0 20570.0 69267.0 2744.0 28923.0 23455.0 0 0 c 0 0 0 0 9325.0 14358.0 765.0 1471.0 618.0 988.0 856.0 652.0 2712.0 11088.0 13955.0 0 0 g 0 0 0 0 15261.0 11186.0 3025.0 65937.0 1238.0 1292.0 710.0 595.0 62419.0 14489.0 12209.0 0 0 t 0 0 0 0 22656.0 26545.0 7397.0 2567.0 2206.0 67550.0 49692.0 1314.0 3953.0 17328.0 22209.0 0 0

MA0724.1_shift4 (VENTX)
; oligos_6nt_mkv3_m45 versus MA0724.1 (VENTX); m=12/19; ncol2=9; w=9; offset=0; strand=D; shift=4; score=0.644902; ----AmCrATTAr---- ; cor=; Ncor= a 0 0 0 0 17344.0 9981.0 562.0 7795.0 23923.0 0.0 0.0 23923.0 8820.0 0 0 0 0 c 0 0 0 0 983.0 13942.0 23923.0 5650.0 203.0 0.0 0.0 0.0 706.0 0 0 0 0 g 0 0 0 0 1934.0 6941.0 0.0 16128.0 0.0 0.0 0.0 0.0 15103.0 0 0 0 0 t 0 0 0 0 3662.0 5912.0 3964.0 626.0 74.0 23923.0 23923.0 0.0 2189.0 0 0 0 0

MA0875.1_shift5 (BARX1)
; oligos_6nt_mkv3_m45 versus MA0875.1 (BARX1); m=13/19; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.57511; -----vcmATTAr---- ; cor=; Ncor= a 0 0 0 0 0 1872.0 590.0 3339.0 6805.0 0.0 0.0 6805.0 1917.0 0 0 0 0 c 0 0 0 0 0 1821.0 5138.0 1992.0 207.0 0.0 0.0 0.0 1391.0 0 0 0 0 g 0 0 0 0 0 2236.0 246.0 1386.0 192.0 0.0 0.0 0.0 2420.0 0 0 0 0 t 0 0 0 0 0 877.0 1667.0 87.0 0.0 6805.0 6805.0 0.0 1077.0 0 0 0 0

MA0876.1_shift5 (BSX)
; oligos_6nt_mkv3_m45 versus MA0876.1 (BSX); m=14/19; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.568083; -----symATTAv---- ; cor=; Ncor= a 0 0 0 0 0 1449.0 688.0 4036.0 8832.0 0.0 96.0 8832.0 2770.0 0 0 0 0 c 0 0 0 0 0 3929.0 5585.0 2483.0 194.0 0.0 0.0 0.0 2369.0 0 0 0 0 g 0 0 0 0 0 2290.0 103.0 2197.0 1078.0 0.0 0.0 0.0 2417.0 0 0 0 0 t 0 0 0 0 0 1164.0 3247.0 116.0 66.0 8832.0 8832.0 0.0 1276.0 0 0 0 0

MA0883.1_shift0 (Dmbx1)
; oligos_6nt_mkv3_m45 versus MA0883.1 (Dmbx1); m=15/19; ncol2=17; w=10; offset=-4; strand=D; shift=0; score=0.557473; wdrwmmGGATTArkbww ; cor=; Ncor= a 34.0 28.0 49.0 49.0 25.0 28.0 6.0 0.0 94.0 0.0 1.0 97.0 40.0 9.0 15.0 30.0 37.0 c 13.0 8.0 8.0 8.0 36.0 50.0 1.0 1.0 6.0 0.0 1.0 0.0 5.0 11.0 28.0 20.0 12.0 g 12.0 37.0 31.0 13.0 18.0 20.0 93.0 99.0 0.0 0.0 0.0 0.0 35.0 37.0 30.0 19.0 15.0 t 41.0 27.0 12.0 30.0 21.0 3.0 0.0 0.0 0.0 99.0 98.0 3.0 20.0 42.0 27.0 30.0 36.0

MA0056.2_rc_shift0 (MZF1_rc)
; oligos_6nt_mkv3_m45 versus MA0056.2_rc (MZF1_rc); m=16/19; ncol2=13; w=9; offset=-4; strand=R; shift=0; score=0.502444; rdgTGGGGATTwk---- ; cor=; Ncor= a 2501.0 2586.0 2019.0 1111.0 369.0 154.0 114.0 93.0 7982.0 282.0 372.0 2278.0 2033.0 0 0 0 0 c 1773.0 1482.0 1523.0 484.0 83.0 58.0 54.0 100.0 98.0 385.0 999.0 1543.0 1808.0 0 0 0 0 g 2206.0 2078.0 3007.0 611.0 7673.0 7919.0 7939.0 7949.0 56.0 426.0 1016.0 1944.0 2260.0 0 0 0 0 t 1762.0 2096.0 1693.0 6036.0 117.0 111.0 135.0 100.0 106.0 7149.0 5855.0 2477.0 2141.0 0 0 0 0

MA0151.1_shift8 (Arid3a)
; oligos_6nt_mkv3_m45 versus MA0151.1 (Arid3a); m=17/19; ncol2=6; w=6; offset=4; strand=D; shift=8; score=0.481202; --------ATyAAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 27.0 0.0 1.0 27.0 27.0 20.0 0 0 0 c 0 0 0 0 0 0 0 0 0.0 0.0 9.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 0 0 0 t 0 0 0 0 0 0 0 0 0.0 27.0 17.0 0.0 0.0 6.0 0 0 0

MA0884.1_rc_shift5 (DUXA_rc)
; oligos_6nt_mkv3_m45 versus MA0884.1_rc (DUXA_rc); m=18/19; ncol2=13; w=9; offset=1; strand=R; shift=5; score=0.479368; -----yTGATTarrTya ; cor=; Ncor= a 0 0 0 0 0 189.0 92.0 108.0 1014.0 7.0 22.0 1014.0 417.0 620.0 5.0 12.0 1014.0 c 0 0 0 0 0 283.0 52.0 3.0 5.0 10.0 47.0 116.0 193.0 125.0 11.0 359.0 111.0 g 0 0 0 0 0 178.0 29.0 1014.0 1.0 7.0 56.0 344.0 392.0 394.0 6.0 5.0 285.0 t 0 0 0 0 0 364.0 1014.0 0.0 0.0 1014.0 1014.0 23.0 12.0 136.0 1014.0 655.0 241.0

MA0468.1_rc_shift6 (DUX4_rc)
; oligos_6nt_mkv3_m45 versus MA0468.1_rc (DUX4_rc); m=19/19; ncol2=11; w=8; offset=2; strand=R; shift=6; score=0.438407; ------TGATTrrrTTA ; cor=; Ncor= a 0 0 0 0 0 0 4419.0 809.0 38217.0 0.0 50.0 18139.0 16758.0 19312.0 0.0 0.0 27446.0 c 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 6127.0 4981.0 2002.0 0.0 1216.0 979.0 g 0 0 0 0 0 0 0.0 37408.0 0.0 0.0 2889.0 13951.0 16478.0 11675.0 0.0 0.0 2495.0 t 0 0 0 0 0 0 33798.0 0.0 0.0 38217.0 35278.0 0.0 0.0 5228.0 38217.0 37001.0 7297.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m4_shift5 ; 33 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m4_shift5 (oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4)
; oligos_7nt_mkv4_m4 (oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4); m=0 (reference); ncol1=12; shift=5; ncol=19; -----ksTGACTCAtcs-- ; Alignment reference a 0 0 0 0 0 100 105 3 10 441 17 7 19 435 17 109 87 0 0 c 0 0 0 0 0 89 136 1 6 3 395 3 422 6 93 136 146 0 0 g 0 0 0 0 0 147 185 5 419 2 25 6 7 4 111 104 139 0 0 t 0 0 0 0 0 113 23 440 14 3 12 433 1 4 228 100 77 0 0

MA1130.1_rc_shift5 (FOSL2::JUN_rc)
; oligos_7nt_mkv4_m4 versus MA1130.1_rc (FOSL2::JUN_rc); m=1/32; ncol2=12; w=12; offset=0; strand=R; shift=5; score=0.965664; -----krTGACTCAymm-- ; cor=; Ncor= a 0 0 0 0 0 209.0 589.0 1.0 1.0 998.0 58.0 29.0 158.0 998.0 55.0 269.0 268.0 0 0 c 0 0 0 0 0 180.0 93.0 1.0 1.0 1.0 698.0 1.0 840.0 1.0 282.0 338.0 295.0 0 0 g 0 0 0 0 0 341.0 299.0 0.0 979.0 1.0 141.0 123.0 1.0 1.0 121.0 179.0 248.0 0 0 t 0 0 0 0 0 269.0 19.0 998.0 20.0 1.0 103.0 847.0 1.0 1.0 542.0 214.0 189.0 0 0

MA1134.1_shift5 (FOS::JUNB)
; oligos_7nt_mkv4_m4 versus MA1134.1 (FOS::JUNB); m=2/32; ncol2=12; w=12; offset=0; strand=D; shift=5; score=0.902131; -----krTGAsTCAymv-- ; cor=; Ncor= a 0 0 0 0 0 174.0 593.0 1.0 1.0 965.0 48.0 1.0 27.0 998.0 7.0 275.0 283.0 0 0 c 0 0 0 0 0 168.0 105.0 1.0 1.0 30.0 309.0 1.0 971.0 1.0 284.0 363.0 304.0 0 0 g 0 0 0 0 0 372.0 267.0 1.0 868.0 1.0 618.0 3.0 1.0 1.0 51.0 178.0 256.0 0 0 t 0 0 0 0 0 286.0 36.0 998.0 131.0 4.0 25.0 996.0 1.0 1.0 658.0 184.0 156.0 0 0

MA1141.1_rc_shift4 (FOS::JUND_rc)
; oligos_7nt_mkv4_m4 versus MA1141.1_rc (FOS::JUND_rc); m=3/32; ncol2=13; w=12; offset=-1; strand=R; shift=4; score=0.895205; ----bkrTGACTCAymm-- ; cor=; Ncor= a 0 0 0 0 180.0 185.0 612.0 0.0 0.0 999.0 19.0 15.0 129.0 999.0 38.0 263.0 258.0 0 0 c 0 0 0 0 292.0 195.0 77.0 0.0 0.0 0.0 867.0 0.0 871.0 0.0 266.0 389.0 315.0 0 0 g 0 0 0 0 264.0 370.0 290.0 0.0 970.0 0.0 40.0 91.0 0.0 1.0 104.0 167.0 244.0 0 0 t 0 0 0 0 264.0 250.0 21.0 999.0 29.0 0.0 75.0 894.0 0.0 0.0 593.0 182.0 183.0 0 0

MA0477.2_shift4 (FOSL1)
; oligos_7nt_mkv4_m4 versus MA0477.2 (FOSL1); m=4/32; ncol2=13; w=12; offset=-1; strand=D; shift=4; score=0.893924; ----draTGACTCAthy-- ; cor=; Ncor= a 0 0 0 0 14979.0 15921.0 35056.0 260.0 515.0 56806.0 2557.0 1060.0 3133.0 56408.0 2716.0 14671.0 13956.0 0 0 c 0 0 0 0 12491.0 11018.0 6703.0 460.0 301.0 287.0 43918.0 163.0 53711.0 344.0 10399.0 15640.0 17637.0 0 0 g 0 0 0 0 14848.0 16855.0 13127.0 183.0 54619.0 286.0 8615.0 598.0 278.0 566.0 6533.0 12314.0 11065.0 0 0 t 0 0 0 0 15363.0 13887.0 2795.0 56778.0 2246.0 302.0 2591.0 55860.0 559.0 363.0 38033.0 15056.0 15023.0 0 0

MA1634.1_shift5 (BATF)
; oligos_7nt_mkv4_m4 versus MA1634.1 (BATF); m=5/32; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.89324; -----waTGACTCAth--- ; cor=; Ncor= a 0 0 0 0 0 13555.0 22575.0 483.0 1139.0 45946.0 2051.0 1130.0 4742.0 45316.0 8146.0 16139.0 0 0 0 c 0 0 0 0 0 5742.0 8931.0 355.0 570.0 250.0 37333.0 306.0 40279.0 431.0 7566.0 12048.0 0 0 0 g 0 0 0 0 0 11492.0 8627.0 283.0 40617.0 341.0 5573.0 836.0 711.0 507.0 9681.0 5919.0 0 0 0 t 0 0 0 0 0 16219.0 6875.0 45887.0 4682.0 471.0 2051.0 44736.0 1276.0 754.0 21615.0 12902.0 0 0 0

MA0462.2_shift5 (BATF::JUN)
; oligos_7nt_mkv4_m4 versus MA0462.2 (BATF::JUN); m=6/32; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.893076; -----waTGACTCAth--- ; cor=; Ncor= a 0 0 0 0 0 10765.0 18789.0 367.0 834.0 37280.0 1399.0 755.0 3955.0 36854.0 6299.0 13407.0 0 0 0 c 0 0 0 0 0 4762.0 7260.0 275.0 400.0 204.0 31168.0 241.0 32770.0 318.0 6105.0 9668.0 0 0 0 g 0 0 0 0 0 9317.0 6729.0 182.0 33135.0 350.0 4188.0 539.0 522.0 424.0 7745.0 4923.0 0 0 0 t 0 0 0 0 0 13310.0 5376.0 37330.0 3785.0 320.0 1399.0 36619.0 907.0 558.0 18005.0 10156.0 0 0 0

MA1128.1_shift4 (FOSL1::JUN)
; oligos_7nt_mkv4_m4 versus MA1128.1 (FOSL1::JUN); m=7/32; ncol2=13; w=12; offset=-1; strand=D; shift=4; score=0.891803; ----kkrTGACTCAtmm-- ; cor=; Ncor= a 0 0 0 0 208.0 172.0 602.0 1.0 3.0 994.0 26.0 33.0 159.0 984.0 57.0 296.0 277.0 0 0 c 0 0 0 0 246.0 159.0 89.0 2.0 2.0 2.0 826.0 2.0 835.0 4.0 245.0 308.0 289.0 0 0 g 0 0 0 0 253.0 380.0 283.0 1.0 957.0 2.0 51.0 140.0 2.0 9.0 119.0 173.0 237.0 0 0 t 0 0 0 0 293.0 289.0 26.0 996.0 38.0 3.0 97.0 826.0 4.0 4.0 579.0 223.0 196.0 0 0

MA0835.2_shift5 (BATF3)
; oligos_7nt_mkv4_m4 versus MA0835.2 (BATF3); m=8/32; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.886216; -----waTGACTCAtw--- ; cor=; Ncor= a 0 0 0 0 0 3609.0 6137.0 132.0 245.0 11670.0 408.0 267.0 1248.0 11529.0 2334.0 4521.0 0 0 0 c 0 0 0 0 0 1245.0 2106.0 59.0 62.0 92.0 10589.0 79.0 10347.0 84.0 1664.0 2733.0 0 0 0 g 0 0 0 0 0 2608.0 1831.0 37.0 10420.0 87.0 560.0 117.0 88.0 117.0 2249.0 1255.0 0 0 0 t 0 0 0 0 0 4503.0 1891.0 11737.0 1238.0 116.0 408.0 11502.0 282.0 235.0 5718.0 3456.0 0 0 0

MA1137.1_shift4 (FOSL1::JUNB)
; oligos_7nt_mkv4_m4 versus MA1137.1 (FOSL1::JUNB); m=9/32; ncol2=13; w=12; offset=-1; strand=D; shift=4; score=0.880765; ----ykrTGAcTMAtmc-- ; cor=; Ncor= a 0 0 0 0 237.0 216.0 566.0 23.0 36.0 917.0 63.0 59.0 271.0 904.0 53.0 300.0 247.0 0 0 c 0 0 0 0 269.0 146.0 100.0 16.0 21.0 20.0 626.0 23.0 683.0 21.0 225.0 298.0 300.0 0 0 g 0 0 0 0 195.0 376.0 287.0 16.0 880.0 21.0 198.0 115.0 9.0 38.0 170.0 204.0 223.0 0 0 t 0 0 0 0 300.0 263.0 47.0 945.0 63.0 42.0 113.0 803.0 37.0 37.0 552.0 198.0 230.0 0 0

MA0491.2_shift4 (JUND)
; oligos_7nt_mkv4_m4 versus MA0491.2 (JUND); m=10/32; ncol2=13; w=12; offset=-1; strand=D; shift=4; score=0.878384; ----wraTGACTCAThh-- ; cor=; Ncor= a 0 0 0 0 28467.0 29234.0 70166.0 644.0 1365.0 103797.0 4634.0 2053.0 4915.0 103420.0 2796.0 27969.0 28212.0 0 0 c 0 0 0 0 21965.0 19712.0 10173.0 757.0 873.0 650.0 76028.0 496.0 98628.0 751.0 12025.0 28250.0 29793.0 0 0 g 0 0 0 0 25006.0 31347.0 20586.0 443.0 99787.0 573.0 20633.0 1147.0 953.0 965.0 7908.0 22249.0 19236.0 0 0 t 0 0 0 0 30507.0 25652.0 5020.0 104101.0 3920.0 925.0 4650.0 102249.0 1449.0 809.0 83216.0 27477.0 28704.0 0 0

MA0490.2_shift4 (JUNB)
; oligos_7nt_mkv4_m4 versus MA0490.2 (JUNB); m=11/32; ncol2=13; w=12; offset=-1; strand=D; shift=4; score=0.874781; ----wdATGACTCATwh-- ; cor=; Ncor= a 0 0 0 0 22772.0 23561.0 56607.0 538.0 770.0 78101.0 4755.0 1999.0 5243.0 77675.0 3722.0 21544.0 21137.0 0 0 c 0 0 0 0 16583.0 15807.0 7817.0 654.0 550.0 523.0 59784.0 289.0 73199.0 588.0 8876.0 19230.0 20653.0 0 0 g 0 0 0 0 18150.0 20403.0 11566.0 322.0 74757.0 550.0 10519.0 913.0 617.0 900.0 7508.0 16491.0 15068.0 0 0 t 0 0 0 0 22351.0 20085.0 3866.0 78342.0 3779.0 682.0 4798.0 76655.0 797.0 693.0 59750.0 22591.0 22998.0 0 0

MA0476.1_shift5 (FOS)
; oligos_7nt_mkv4_m4 versus MA0476.1 (FOS); m=12/32; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.874371; -----dvTGAsTCATb--- ; cor=; Ncor= a 0 0 0 0 0 7879.0 7475.0 0.0 0.0 29396.0 998.0 0.0 0.0 29396.0 258.0 4006.0 0 0 0 c 0 0 0 0 0 712.0 10177.0 0.0 0.0 0.0 14079.0 0.0 29396.0 0.0 5823.0 8236.0 0 0 0 g 0 0 0 0 0 9686.0 10841.0 0.0 27108.0 0.0 11206.0 0.0 0.0 0.0 1538.0 7897.0 0 0 0 t 0 0 0 0 0 11119.0 903.0 29396.0 2288.0 0.0 3113.0 29396.0 0.0 0.0 21777.0 9257.0 0 0 0

MA1622.1_shift3 (Smad2::Smad3)
; oligos_7nt_mkv4_m4 versus MA1622.1 (Smad2::Smad3); m=13/32; ncol2=14; w=12; offset=-2; strand=D; shift=3; score=0.844797; ---rtkrTGACTCAtwm-- ; cor=; Ncor= a 0 0 0 2995.0 2508.0 2499.0 4451.0 79.0 90.0 10141.0 627.0 247.0 711.0 10056.0 683.0 2948.0 2746.0 0 0 c 0 0 0 2254.0 2515.0 1642.0 2212.0 59.0 82.0 44.0 7480.0 53.0 9443.0 85.0 2047.0 2479.0 2595.0 0 0 g 0 0 0 2615.0 2324.0 3479.0 2888.0 56.0 9768.0 58.0 1542.0 68.0 90.0 79.0 1979.0 2154.0 2524.0 0 0 t 0 0 0 2481.0 2998.0 2725.0 794.0 10151.0 405.0 102.0 696.0 9977.0 101.0 125.0 5636.0 2764.0 2480.0 0 0

MA0478.1_rc_shift6 (FOSL2_rc)
; oligos_7nt_mkv4_m4 versus MA0478.1_rc (FOSL2_rc); m=14/32; ncol2=11; w=11; offset=1; strand=R; shift=6; score=0.835062; ------vTGAsTCAyym-- ; cor=; Ncor= a 0 0 0 0 0 0 1986.0 0.0 0.0 5318.0 194.0 0.0 0.0 5318.0 74.0 494.0 1405.0 0 0 c 0 0 0 0 0 0 1933.0 0.0 0.0 0.0 1838.0 192.0 5318.0 0.0 2328.0 2707.0 2086.0 0 0 g 0 0 0 0 0 0 1399.0 0.0 5113.0 0.0 3286.0 51.0 0.0 0.0 55.0 592.0 994.0 0 0 t 0 0 0 0 0 0 0.0 5318.0 205.0 0.0 0.0 5075.0 0.0 0.0 2861.0 1525.0 833.0 0 0

MA0841.1_shift5 (NFE2)
; oligos_7nt_mkv4_m4 versus MA0841.1 (NFE2); m=15/32; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.827332; -----vATGACTCATs--- ; cor=; Ncor= a 0 0 0 0 0 5589.0 18831.0 2.0 0.0 18831.0 37.0 0.0 1.0 18831.0 0.0 487.0 0 0 0 c 0 0 0 0 0 7208.0 9.0 8.0 0.0 11.0 14360.0 20.0 18831.0 13.0 2689.0 9860.0 0 0 0 g 0 0 0 0 0 5303.0 1306.0 0.0 18831.0 0.0 4472.0 3.0 0.0 8.0 10.0 5067.0 0 0 0 t 0 0 0 0 0 731.0 5.0 18831.0 2.0 4.0 17.0 18831.0 3.0 5.0 18831.0 3417.0 0 0 0

MA1633.1_shift5 (BACH1)
; oligos_7nt_mkv4_m4 versus MA1633.1 (BACH1); m=16/32; ncol2=13; w=12; offset=0; strand=D; shift=5; score=0.812367; -----saTGACTCAGCaw- ; cor=; Ncor= a 0 0 0 0 0 3257.0 6929.0 105.0 97.0 15046.0 443.0 650.0 576.0 14778.0 339.0 769.0 8799.0 4492.0 0 c 0 0 0 0 0 3946.0 3833.0 267.0 149.0 230.0 12597.0 220.0 14563.0 194.0 623.0 13382.0 2167.0 3574.0 0 g 0 0 0 0 0 4835.0 3848.0 149.0 14831.0 167.0 2083.0 266.0 178.0 310.0 13050.0 858.0 1971.0 3553.0 0 t 0 0 0 0 0 3519.0 947.0 15036.0 480.0 114.0 434.0 14421.0 240.0 275.0 1545.0 548.0 2620.0 3938.0 0

MA0099.3_rc_shift5 (FOS::JUN_rc)
; oligos_7nt_mkv4_m4 versus MA0099.3_rc (FOS::JUN_rc); m=17/32; ncol2=10; w=10; offset=0; strand=R; shift=5; score=0.804345; -----krTGACTCAy---- ; cor=; Ncor= a 0 0 0 0 0 162.0 568.0 4.0 4.0 991.0 54.0 45.0 168.0 990.0 40.0 0 0 0 0 c 0 0 0 0 0 164.0 95.0 2.0 3.0 2.0 688.0 4.0 824.0 2.0 257.0 0 0 0 0 g 0 0 0 0 0 397.0 313.0 2.0 963.0 2.0 180.0 131.0 1.0 5.0 111.0 0 0 0 0 t 0 0 0 0 0 277.0 24.0 992.0 30.0 5.0 78.0 820.0 7.0 3.0 592.0 0 0 0 0

MA1135.1_shift5 (FOSB::JUNB)
; oligos_7nt_mkv4_m4 versus MA1135.1 (FOSB::JUNB); m=18/32; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.795002; -----krTGAsTCAy---- ; cor=; Ncor= a 0 0 0 0 0 119.0 598.0 1.0 1.0 997.0 34.0 2.0 191.0 998.0 37.0 0 0 0 0 c 0 0 0 0 0 182.0 61.0 0.0 0.0 1.0 596.0 1.0 808.0 0.0 259.0 0 0 0 0 g 0 0 0 0 0 429.0 321.0 1.0 980.0 1.0 309.0 39.0 1.0 1.0 126.0 0 0 0 0 t 0 0 0 0 0 270.0 20.0 998.0 19.0 1.0 61.0 958.0 1.0 1.0 578.0 0 0 0 0

MA1144.1_shift5 (FOSL2::JUND)
; oligos_7nt_mkv4_m4 versus MA1144.1 (FOSL2::JUND); m=19/32; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.794457; -----krTGAsTCAy---- ; cor=; Ncor= a 0 0 0 0 0 137.0 634.0 0.0 0.0 998.0 46.0 6.0 140.0 999.0 38.0 0 0 0 0 c 0 0 0 0 0 143.0 60.0 0.0 0.0 1.0 604.0 0.0 860.0 0.0 266.0 0 0 0 0 g 0 0 0 0 0 446.0 291.0 0.0 990.0 0.0 292.0 60.0 0.0 0.0 113.0 0 0 0 0 t 0 0 0 0 0 275.0 14.0 999.0 10.0 0.0 58.0 934.0 0.0 0.0 583.0 0 0 0 0

MA1138.1_shift5 (FOSL2::JUNB)
; oligos_7nt_mkv4_m4 versus MA1138.1 (FOSL2::JUNB); m=20/32; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.793523; -----krTGAsTCAy---- ; cor=; Ncor= a 0 0 0 0 0 151.0 621.0 0.0 0.0 999.0 54.0 1.0 168.0 999.0 35.0 0 0 0 0 c 0 0 0 0 0 164.0 53.0 0.0 0.0 0.0 568.0 0.0 831.0 0.0 251.0 0 0 0 0 g 0 0 0 0 0 407.0 314.0 0.0 985.0 0.0 292.0 26.0 0.0 0.0 112.0 0 0 0 0 t 0 0 0 0 0 277.0 13.0 999.0 14.0 0.0 85.0 973.0 0.0 0.0 602.0 0 0 0 0

MA1142.1_shift5 (FOSL1::JUND)
; oligos_7nt_mkv4_m4 versus MA1142.1 (FOSL1::JUND); m=21/32; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.785499; -----rrTGActmAt---- ; cor=; Ncor= a 0 0 0 0 0 265.0 551.0 30.0 22.0 864.0 49.0 98.0 270.0 912.0 174.0 0 0 0 0 c 0 0 0 0 0 221.0 127.0 23.0 61.0 12.0 581.0 45.0 641.0 40.0 212.0 0 0 0 0 g 0 0 0 0 0 279.0 282.0 34.0 777.0 82.0 191.0 187.0 25.0 17.0 144.0 0 0 0 0 t 0 0 0 0 0 235.0 40.0 913.0 140.0 41.0 180.0 669.0 64.0 31.0 470.0 0 0 0 0

MA1132.1_shift5 (JUN::JUNB)
; oligos_7nt_mkv4_m4 versus MA1132.1 (JUN::JUNB); m=22/32; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.772743; -----kaTGACkCAt---- ; cor=; Ncor= a 0 0 0 0 0 203.0 627.0 11.0 10.0 944.0 27.0 58.0 161.0 931.0 188.0 0 0 0 0 c 0 0 0 0 0 128.0 134.0 10.0 21.0 10.0 826.0 24.0 707.0 24.0 248.0 0 0 0 0 g 0 0 0 0 0 408.0 189.0 34.0 921.0 28.0 115.0 353.0 10.0 18.0 64.0 0 0 0 0 t 0 0 0 0 0 261.0 50.0 946.0 47.0 18.0 33.0 565.0 122.0 27.0 500.0 0 0 0 0

MA0496.3_shift4 (MAFK)
; oligos_7nt_mkv4_m4 versus MA0496.3 (MAFK); m=23/32; ncol2=15; w=12; offset=-1; strand=D; shift=4; score=0.69653; ----tgmTGACTCAGCmww ; cor=; Ncor= a 0 0 0 0 11946.0 9602.0 14089.0 1616.0 1108.0 47484.0 2492.0 2722.0 1818.0 47675.0 1439.0 2664.0 24802.0 15933.0 14818.0 c 0 0 0 0 10789.0 10655.0 27000.0 1568.0 1366.0 1670.0 39125.0 1133.0 47872.0 882.0 1921.0 43458.0 14138.0 10737.0 9756.0 g 0 0 0 0 9969.0 21904.0 6706.0 1058.0 46695.0 1306.0 7573.0 1081.0 957.0 1267.0 44013.0 3327.0 4590.0 10512.0 8541.0 t 0 0 0 0 19030.0 9573.0 3939.0 47492.0 2565.0 1274.0 2544.0 46798.0 1087.0 1910.0 4361.0 2285.0 8204.0 14552.0 18619.0

MA0655.1_shift6 (JDP2)
; oligos_7nt_mkv4_m4 versus MA0655.1 (JDP2); m=24/32; ncol2=9; w=9; offset=1; strand=D; shift=6; score=0.690263; ------ATGASTCAT---- ; cor=; Ncor= a 0 0 0 0 0 0 1634.0 5.0 0.0 1634.0 14.0 6.0 22.0 1634.0 22.0 0 0 0 0 c 0 0 0 0 0 0 19.0 6.0 3.0 1.0 1200.0 0.0 1634.0 0.0 404.0 0 0 0 0 g 0 0 0 0 0 0 140.0 1.0 1634.0 2.0 434.0 6.0 3.0 0.0 5.0 0 0 0 0 t 0 0 0 0 0 0 8.0 1634.0 22.0 25.0 13.0 1634.0 9.0 7.0 1634.0 0 0 0 0

MA0489.1_rc_shift6 (JUN(var.2)_rc)
; oligos_7nt_mkv4_m4 versus MA0489.1_rc (JUN(var.2)_rc); m=25/32; ncol2=14; w=11; offset=1; strand=R; shift=6; score=0.672156; ------aTGAsTCAyyyyy ; cor=; Ncor= a 0 0 0 0 0 0 5426.0 0.0 0.0 10757.0 780.0 3.0 0.0 10956.0 0.0 2004.0 1977.0 1773.0 1595.0 c 0 0 0 0 0 0 2645.0 0.0 0.0 0.0 4090.0 0.0 10956.0 0.0 4033.0 4213.0 3461.0 4330.0 4110.0 g 0 0 0 0 0 0 2509.0 0.0 10000.0 0.0 5704.0 0.0 0.0 0.0 993.0 593.0 1122.0 1127.0 1324.0 t 0 0 0 0 0 0 376.0 10956.0 956.0 199.0 382.0 10953.0 0.0 0.0 5930.0 4146.0 4396.0 3726.0 3927.0

MA0591.1_shift3 (Bach1::Mafk)
; oligos_7nt_mkv4_m4 versus MA0591.1 (Bach1::Mafk); m=26/32; ncol2=15; w=12; offset=-2; strand=D; shift=3; score=0.643221; ---rssrTGACTCAGCAs- ; cor=; Ncor= a 0 0 0 45.0 14.0 15.0 66.0 2.0 0.0 113.0 0.0 1.0 5.0 108.0 0.0 0.0 98.0 12.0 0 c 0 0 0 14.0 36.0 41.0 16.0 1.0 0.0 0.0 94.0 0.0 107.0 1.0 1.0 114.0 4.0 42.0 0 g 0 0 0 41.0 46.0 54.0 32.0 0.0 107.0 0.0 20.0 4.0 2.0 3.0 113.0 0.0 6.0 38.0 0 t 0 0 0 14.0 18.0 4.0 0.0 111.0 7.0 1.0 0.0 109.0 0.0 2.0 0.0 0.0 6.0 22.0 0

MA0150.2_shift2 (Nfe2l2)
; oligos_7nt_mkv4_m4 versus MA0150.2 (Nfe2l2); m=27/32; ncol2=15; w=12; offset=-3; strand=D; shift=2; score=0.618174; --casmrTGACTCAGCA-- ; cor=; Ncor= a 0 0 166.0 401.0 118.0 203.0 488.0 0.0 0.0 726.0 20.0 84.0 65.0 577.0 10.0 4.0 623.0 0 0 c 0 0 338.0 78.0 239.0 247.0 28.0 0.0 0.0 0.0 533.0 20.0 549.0 3.0 11.0 699.0 26.0 0 0 g 0 0 109.0 159.0 275.0 152.0 205.0 0.0 711.0 0.0 118.0 16.0 46.0 90.0 698.0 19.0 31.0 0 0 t 0 0 113.0 88.0 94.0 124.0 5.0 726.0 15.0 0.0 55.0 606.0 66.0 56.0 7.0 4.0 46.0 0 0

MA0089.2_shift3 (NFE2L1)
; oligos_7nt_mkv4_m4 versus MA0089.2 (NFE2L1); m=28/32; ncol2=16; w=12; offset=-2; strand=D; shift=3; score=0.606867; ---avmATGACTCAGCAaw ; cor=; Ncor= a 0 0 0 1244.0 878.0 992.0 2582.0 12.0 17.0 3336.0 51.0 218.0 185.0 3171.0 57.0 16.0 2857.0 1362.0 1145.0 c 0 0 0 703.0 946.0 853.0 57.0 5.0 7.0 4.0 2864.0 12.0 3049.0 9.0 18.0 3281.0 64.0 517.0 224.0 g 0 0 0 671.0 1050.0 742.0 706.0 2.0 3308.0 10.0 358.0 35.0 25.0 78.0 3018.0 33.0 142.0 694.0 305.0 t 0 0 0 738.0 482.0 769.0 11.0 3337.0 24.0 6.0 83.0 3091.0 97.0 98.0 263.0 26.0 293.0 783.0 1682.0

MA1101.2_shift1 (BACH2)
; oligos_7nt_mkv4_m4 versus MA1101.2 (BACH2); m=29/32; ncol2=19; w=12; offset=-4; strand=D; shift=1; score=0.553639; -awasCATGAsTCATsvtw ; cor=; Ncor= a 0 26746.0 38327.0 59307.0 12404.0 9369.0 62993.0 1.0 6.0 67846.0 50.0 3.0 115.0 68264.0 47.0 4522.0 19650.0 18457.0 23586.0 c 0 12203.0 8823.0 5534.0 21218.0 61580.0 260.0 7.0 0.0 1088.0 37438.0 20.0 68215.0 2.0 11634.0 35220.0 17682.0 13438.0 10703.0 g 0 13720.0 9605.0 8490.0 21257.0 6727.0 15304.0 1.0 68240.0 13.0 30785.0 856.0 0.0 11.0 2028.0 30498.0 19155.0 7650.0 8221.0 t 0 15601.0 24469.0 15405.0 13391.0 8116.0 0.0 68266.0 54.0 6.0 18.0 67975.0 3.0 0.0 63746.0 5274.0 11783.0 54749.0 39012.0

MA0501.1_shift6 (MAF::NFE2)
; oligos_7nt_mkv4_m4 versus MA0501.1 (MAF::NFE2); m=30/32; ncol2=15; w=11; offset=1; strand=D; shift=6; score=0.551466; ------rTGACTCAGCArw ; cor=; Ncor= a 0 0 0 0 0 0 726.0 0.0 0.0 1090.0 16.0 110.0 80.0 978.0 8.0 0.0 931.0 383.0 361.0 c 0 0 0 0 0 0 26.0 0.0 0.0 0.0 871.0 1.0 937.0 0.0 4.0 1063.0 17.0 203.0 100.0 g 0 0 0 0 0 0 334.0 0.0 1082.0 0.0 166.0 12.0 22.0 51.0 1041.0 22.0 73.0 283.0 130.0 t 0 0 0 0 0 0 4.0 1090.0 8.0 0.0 37.0 967.0 51.0 61.0 37.0 5.0 69.0 221.0 499.0

MA1114.1_rc_shift0 (PBX3_rc)
; oligos_7nt_mkv4_m4 versus MA1114.1_rc (PBX3_rc); m=31/32; ncol2=17; w=12; offset=-5; strand=R; shift=0; score=0.494434; sygcCTGTCACTCAvmc-- ; cor=; Ncor= a 1508.0 1465.0 1525.0 683.0 549.0 376.0 138.0 145.0 83.0 6290.0 969.0 256.0 160.0 5697.0 1924.0 1853.0 1523.0 0 0 c 2217.0 2068.0 1591.0 4077.0 5691.0 425.0 209.0 604.0 6550.0 285.0 4929.0 214.0 6406.0 503.0 1928.0 1934.0 2192.0 0 0 g 1801.0 1619.0 2654.0 1377.0 412.0 129.0 6524.0 108.0 242.0 199.0 788.0 125.0 227.0 225.0 1849.0 1724.0 1711.0 0 0 t 1495.0 1869.0 1251.0 884.0 369.0 6091.0 150.0 6164.0 146.0 247.0 335.0 6426.0 228.0 596.0 1320.0 1510.0 1595.0 0 0

MA0067.1_rc_shift4 (Pax2_rc)
; oligos_7nt_mkv4_m4 versus MA0067.1_rc (Pax2_rc); m=32/32; ncol2=8; w=7; offset=-1; strand=R; shift=4; score=0.437323; ----vmrTGAcw------- ; cor=; Ncor= a 0 0 0 0 8.0 10.0 11.0 1.0 2.0 26.0 2.0 9.0 0 0 0 0 0 0 0 c 0 0 0 0 11.0 19.0 1.0 3.0 1.0 0.0 21.0 5.0 0 0 0 0 0 0 0 g 0 0 0 0 11.0 0.0 17.0 1.0 28.0 2.0 1.0 7.0 0 0 0 0 0 0 0 t 0 0 0 0 1.0 2.0 2.0 26.0 0.0 3.0 7.0 10.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m34_shift9 ; 53 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m34_shift9 (oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34)
; oligos_7nt_mkv4_m34 (oligos_7nt_mkv4_m34oligos_7nt_mkv4_m34); m=0 (reference); ncol1=11; shift=9; ncol=20; ---------vsAAGGTCAss ; Alignment reference a 0 0 0 0 0 0 0 0 0 28 21 110 104 2 0 0 6 108 17 22 c 0 0 0 0 0 0 0 0 0 28 37 0 7 9 0 0 101 1 40 40 g 0 0 0 0 0 0 0 0 0 31 30 1 0 96 110 0 0 2 37 37 t 0 0 0 0 0 0 0 0 0 24 23 0 0 4 1 111 4 0 17 12

MA1111.1_shift9 (NR2F2)
; oligos_7nt_mkv4_m34 versus MA1111.1 (NR2F2); m=1/52; ncol2=11; w=11; offset=0; strand=D; shift=9; score=0.964841; ---------yaAAGGTCAar ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 488.0 1027.0 1788.0 2084.0 37.0 33.0 17.0 30.0 2111.0 633.0 847.0 c 0 0 0 0 0 0 0 0 0 692.0 456.0 37.0 15.0 16.0 12.0 22.0 1978.0 16.0 503.0 384.0 g 0 0 0 0 0 0 0 0 0 418.0 320.0 173.0 82.0 2108.0 2132.0 30.0 26.0 43.0 544.0 572.0 t 0 0 0 0 0 0 0 0 0 606.0 401.0 206.0 23.0 43.0 27.0 2135.0 170.0 34.0 524.0 401.0

MA0141.3_shift9 (ESRRB)
; oligos_7nt_mkv4_m34 versus MA0141.3 (ESRRB); m=2/52; ncol2=11; w=11; offset=0; strand=D; shift=9; score=0.888168; ---------TCAAGGTCAww ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 108.0 9.0 1746.0 1746.0 3.0 1.0 6.0 2.0 1746.0 702.0 692.0 c 0 0 0 0 0 0 0 0 0 373.0 1746.0 1.0 1.0 2.0 4.0 11.0 1746.0 0.0 256.0 328.0 g 0 0 0 0 0 0 0 0 0 75.0 255.0 0.0 3.0 1746.0 1746.0 8.0 1.0 56.0 42.0 189.0 t 0 0 0 0 0 0 0 0 0 1746.0 7.0 4.0 0.0 1.0 3.0 1746.0 15.0 3.0 1045.0 537.0

MA0643.1_shift9 (Esrrg)
; oligos_7nt_mkv4_m34 versus MA0643.1 (Esrrg); m=3/52; ncol2=10; w=10; offset=0; strand=D; shift=9; score= 0.8603; ---------tsAAGGTCAw- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 3489.0 705.0 14909.0 14909.0 12.0 0.0 472.0 7.0 14909.0 4305.0 0 c 0 0 0 0 0 0 0 0 0 5974.0 10009.0 0.0 12.0 7.0 17.0 41.0 14909.0 34.0 3207.0 0 g 0 0 0 0 0 0 0 0 0 2800.0 4901.0 603.0 34.0 14909.0 14909.0 844.0 271.0 1561.0 1181.0 0 t 0 0 0 0 0 0 0 0 0 14909.0 490.0 195.0 5.0 298.0 14.0 14909.0 1280.0 60.0 6216.0 0

MA1112.2_shift8 (NR4A1)
; oligos_7nt_mkv4_m34 versus MA1112.2 (NR4A1); m=4/52; ncol2=12; w=11; offset=-1; strand=D; shift=8; score=0.831869; --------kwAAAGGTCAva ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3484.0 4463.0 14313.0 15268.0 15684.0 427.0 300.0 365.0 70.0 15126.0 4456.0 5239.0 c 0 0 0 0 0 0 0 0 3283.0 3563.0 236.0 117.0 62.0 92.0 166.0 824.0 14949.0 151.0 3987.0 3370.0 g 0 0 0 0 0 0 0 0 4159.0 3380.0 823.0 333.0 128.0 12434.0 14964.0 1358.0 151.0 329.0 4075.0 3887.0 t 0 0 0 0 0 0 0 0 5001.0 4521.0 555.0 209.0 53.0 2974.0 497.0 13380.0 757.0 321.0 3409.0 3431.0

MA0592.3_shift7 (ESRRA)
; oligos_7nt_mkv4_m34 versus MA0592.3 (ESRRA); m=5/52; ncol2=13; w=11; offset=-2; strand=D; shift=7; score=0.78741; -------kytCAAGGTCAya ; cor=; Ncor= a 0 0 0 0 0 0 0 5231.0 3546.0 2305.0 972.0 24681.0 24744.0 480.0 223.0 1003.0 293.0 24648.0 5535.0 9325.0 c 0 0 0 0 0 0 0 5066.0 8789.0 6446.0 21854.0 355.0 415.0 340.0 146.0 379.0 23989.0 226.0 9140.0 5586.0 g 0 0 0 0 0 0 0 9007.0 6312.0 1850.0 2323.0 556.0 569.0 24676.0 25332.0 949.0 786.0 781.0 4455.0 5892.0 t 0 0 0 0 0 0 0 6691.0 7348.0 15394.0 846.0 403.0 267.0 499.0 294.0 23664.0 927.0 340.0 6865.0 5192.0

MA0017.2_shift9 (NR2F1)
; oligos_7nt_mkv4_m34 versus MA0017.2 (NR2F1); m=6/52; ncol2=13; w=11; offset=0; strand=D; shift=9; score=0.751753; ---------carRGGTCAmr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 4802.0 7266.0 6333.0 8496.0 0.0 0.0 0.0 0.0 12059.0 5116.0 3229.0 c 0 0 0 0 0 0 0 0 0 11446.0 1692.0 387.0 0.0 30.0 0.0 0.0 12059.0 0.0 3055.0 2966.0 g 0 0 0 0 0 0 0 0 0 3276.0 1153.0 4869.0 3791.0 12059.0 12059.0 0.0 0.0 91.0 1618.0 4395.0 t 0 0 0 0 0 0 0 0 0 3980.0 1948.0 469.0 0.0 0.0 0.0 12059.0 0.0 0.0 2270.0 1469.0

MA1540.1_shift8 (NR5A1)
; oligos_7nt_mkv4_m34 versus MA1540.1 (NR5A1); m=7/52; ncol2=11; w=10; offset=-1; strand=D; shift=8; score=0.746755; --------kyCAAGGyCry- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 767.0 906.0 84.0 4118.0 4118.0 0.0 0.0 951.0 70.0 4118.0 849.0 0 c 0 0 0 0 0 0 0 0 991.0 1690.0 4118.0 0.0 128.0 0.0 0.0 2021.0 4118.0 242.0 1323.0 0 g 0 0 0 0 0 0 0 0 1268.0 902.0 716.0 287.0 137.0 4118.0 4118.0 381.0 218.0 1684.0 820.0 0 t 0 0 0 0 0 0 0 0 1093.0 2428.0 135.0 4.0 143.0 86.0 0.0 4118.0 651.0 287.0 1126.0 0

MA1535.1_shift10 (NR2C1)
; oligos_7nt_mkv4_m34 versus MA1535.1 (NR2C1); m=8/52; ncol2=9; w=9; offset=1; strand=D; shift=10; score=0.705591; ----------mrrGGTCAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2552.0 4035.0 4866.0 0.0 0.0 0.0 0.0 9622.0 2298.0 0 c 0 0 0 0 0 0 0 0 0 0 2848.0 1225.0 227.0 0.0 0.0 0.0 9622.0 0.0 2786.0 0 g 0 0 0 0 0 0 0 0 0 0 1997.0 5587.0 4756.0 9622.0 9622.0 271.0 321.0 1716.0 2039.0 0 t 0 0 0 0 0 0 0 0 0 0 2225.0 1316.0 55.0 297.0 0.0 9622.0 0.0 0.0 2499.0 0

MA0071.1_shift8 (RORA)
; oligos_7nt_mkv4_m34 versus MA0071.1 (RORA); m=9/52; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=0.682837; --------wwcwAGGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 15.0 9.0 6.0 11.0 21.0 0.0 0.0 0.0 0.0 25.0 0 0 c 0 0 0 0 0 0 0 0 1.0 1.0 12.0 2.0 0.0 0.0 0.0 0.0 25.0 0.0 0 0 g 0 0 0 0 0 0 0 0 2.0 0.0 4.0 5.0 4.0 25.0 25.0 0.0 0.0 0.0 0 0 t 0 0 0 0 0 0 0 0 7.0 15.0 3.0 7.0 0.0 0.0 0.0 25.0 0.0 0.0 0 0

MA0160.1_shift11 (NR4A2)
; oligos_7nt_mkv4_m34 versus MA0160.1 (NR4A2); m=10/52; ncol2=8; w=8; offset=2; strand=D; shift=11; score=0.682574; -----------aAGGTCAc- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 8.0 13.0 0.0 3.0 2.0 0.0 14.0 3.0 0 c 0 0 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 2.0 13.0 0.0 8.0 0 g 0 0 0 0 0 0 0 0 0 0 0 3.0 1.0 13.0 11.0 0.0 0.0 0.0 2.0 0 t 0 0 0 0 0 0 0 0 0 0 0 1.0 0.0 1.0 0.0 10.0 1.0 0.0 0.0 0

MA0505.1_shift5 (Nr5a2)
; oligos_7nt_mkv4_m34 versus MA0505.1 (Nr5a2); m=11/52; ncol2=15; w=11; offset=-4; strand=D; shift=5; score=0.633485; -----ragtTCAAGGyCAgs ; cor=; Ncor= a 0 0 0 0 0 645.0 985.0 276.0 122.0 71.0 8.0 1685.0 1679.0 39.0 0.0 169.0 0.0 1437.0 271.0 249.0 c 0 0 0 0 0 224.0 170.0 198.0 378.0 351.0 1616.0 14.0 0.0 0.0 0.0 584.0 1568.0 20.0 345.0 693.0 g 0 0 0 0 0 634.0 336.0 990.0 366.0 23.0 74.0 0.0 23.0 1663.0 1702.0 61.0 12.0 90.0 740.0 454.0 t 0 0 0 0 0 199.0 211.0 238.0 836.0 1257.0 4.0 3.0 0.0 0.0 0.0 888.0 122.0 155.0 346.0 306.0

MA1150.1_shift8 (RORB)
; oligos_7nt_mkv4_m34 versus MA1150.1 (RORB); m=12/52; ncol2=11; w=10; offset=-1; strand=D; shift=8; score=0.632492; --------AwttrGGTCAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 785.0 526.0 233.0 53.0 602.0 16.0 32.0 28.0 47.0 896.0 205.0 0 c 0 0 0 0 0 0 0 0 14.0 26.0 162.0 165.0 14.0 25.0 13.0 146.0 781.0 15.0 326.0 0 g 0 0 0 0 0 0 0 0 29.0 24.0 201.0 235.0 358.0 907.0 928.0 50.0 17.0 63.0 145.0 0 t 0 0 0 0 0 0 0 0 172.0 425.0 403.0 547.0 26.0 52.0 27.0 776.0 155.0 26.0 324.0 0

MA1536.1_shift11 (NR2C2(var.2))
; oligos_7nt_mkv4_m34 versus MA1536.1 (NR2C2(var.2)); m=13/52; ncol2=8; w=8; offset=2; strand=D; shift=11; score=0.625572; -----------rrGGTCRh- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 6236.0 10232.0 0.0 0.0 0.0 0.0 18628.0 5065.0 0 c 0 0 0 0 0 0 0 0 0 0 0 3111.0 719.0 236.0 0.0 0.0 18628.0 0.0 4757.0 0 g 0 0 0 0 0 0 0 0 0 0 0 6420.0 8395.0 18628.0 18628.0 1588.0 1643.0 6639.0 3684.0 0 t 0 0 0 0 0 0 0 0 0 0 0 2861.0 0.0 1341.0 4790.0 18628.0 4406.0 0.0 5122.0 0

MA0676.1_shift10 (Nr2e1)
; oligos_7nt_mkv4_m34 versus MA0676.1 (Nr2e1); m=14/52; ncol2=9; w=9; offset=1; strand=D; shift=10; score=0.597546; ----------aaAAGTCAA- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1118.0 1118.0 1118.0 1118.0 40.0 0.0 11.0 1118.0 1118.0 0 c 0 0 0 0 0 0 0 0 0 0 244.0 89.0 1.0 0.0 0.0 58.0 1118.0 0.0 131.0 0 g 0 0 0 0 0 0 0 0 0 0 191.0 448.0 101.0 74.0 1118.0 0.0 12.0 0.0 117.0 0 t 0 0 0 0 0 0 0 0 0 0 401.0 369.0 19.0 5.0 8.0 1118.0 112.0 0.0 247.0 0

MA1534.1_rc_shift10 (NR1I3_rc)
; oligos_7nt_mkv4_m34 versus MA1534.1_rc (NR1I3_rc); m=15/52; ncol2=9; w=9; offset=1; strand=R; shift=10; score=0.574407; ----------aaAGTTCAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 37367.0 34323.0 48424.0 0.0 0.0 791.0 0.0 48424.0 7226.0 0 c 0 0 0 0 0 0 0 0 0 0 4479.0 3267.0 0.0 0.0 0.0 342.0 48424.0 0.0 13053.0 0 g 0 0 0 0 0 0 0 0 0 0 8163.0 15443.0 1870.0 48424.0 2972.0 2613.0 100.0 11168.0 4558.0 0 t 0 0 0 0 0 0 0 0 0 0 11057.0 14101.0 0.0 0.0 48424.0 48424.0 6626.0 162.0 23587.0 0

MA0115.1_shift3 (NR1H2::RXRA)
; oligos_7nt_mkv4_m34 versus MA0115.1 (NR1H2::RXRA); m=16/52; ncol2=17; w=11; offset=-6; strand=D; shift=3; score=0.530693; ---AAAGGTCAAAGGTCAAc ; cor=; Ncor= a 0 0 0 17.0 17.0 20.0 0.0 0.0 0.0 0.0 25.0 24.0 25.0 0.0 0.0 0.0 0.0 25.0 20.0 0.0 c 0 0 0 5.0 1.0 0.0 0.0 0.0 0.0 25.0 0.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 1.0 15.0 g 0 0 0 0.0 5.0 5.0 25.0 24.0 0.0 0.0 0.0 0.0 0.0 25.0 25.0 0.0 0.0 0.0 2.0 6.0 t 0 0 0 3.0 2.0 0.0 0.0 1.0 25.0 0.0 0.0 1.0 0.0 0.0 0.0 25.0 0.0 0.0 2.0 4.0

MA1537.1_shift4 (NR2F1(var.2))
; oligos_7nt_mkv4_m34 versus MA1537.1 (NR2F1(var.2)); m=17/52; ncol2=15; w=10; offset=-5; strand=D; shift=4; score=0.526418; ----rrGGTCAAAGGTCAm- ; cor=; Ncor= a 0 0 0 0 12164.0 20462.0 317.0 468.0 8.0 10.0 33956.0 33956.0 33956.0 13.0 242.0 21.0 37.0 33956.0 9117.0 0 c 0 0 0 0 4591.0 436.0 122.0 42.0 465.0 33956.0 6.0 228.0 48.0 0.0 0.0 751.0 33956.0 279.0 9477.0 0 g 0 0 0 0 13408.0 13494.0 33956.0 33956.0 1340.0 641.0 606.0 3361.0 2542.0 33956.0 33956.0 1854.0 1543.0 6237.0 7332.0 0 t 0 0 0 0 3792.0 280.0 767.0 744.0 33956.0 2239.0 19.0 2711.0 41.0 59.0 494.0 33956.0 4148.0 720.0 8029.0 0

MA1541.1_shift8 (NR6A1)
; oligos_7nt_mkv4_m34 versus MA1541.1 (NR6A1); m=18/52; ncol2=17; w=11; offset=-1; strand=D; shift=8; score=0.525507; --------gtcAAGkTCAAG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 171.0 255.0 124.0 896.0 896.0 13.0 19.0 1.0 7.0 896.0 896.0 21.0 c 0 0 0 0 0 0 0 0 197.0 473.0 896.0 4.0 91.0 9.0 12.0 74.0 896.0 0.0 96.0 15.0 g 0 0 0 0 0 0 0 0 313.0 348.0 342.0 44.0 72.0 896.0 443.0 26.0 29.0 2.0 35.0 896.0 t 0 0 0 0 0 0 0 0 216.0 896.0 132.0 11.0 51.0 62.0 453.0 896.0 40.0 14.0 65.0 62.0

MA1494.1_shift4 (HNF4A(var.2))
; oligos_7nt_mkv4_m34 versus MA1494.1 (HNF4A(var.2)); m=19/52; ncol2=15; w=10; offset=-5; strand=D; shift=4; score=0.521947; ----rrGTCCAAAGGTCRm- ; cor=; Ncor= a 0 0 0 0 212.0 301.0 3.0 2.0 100.0 7.0 651.0 651.0 651.0 0.0 3.0 0.0 2.0 465.0 174.0 0 c 0 0 0 0 70.0 7.0 2.0 1.0 651.0 651.0 0.0 1.0 0.0 0.0 0.0 4.0 651.0 5.0 217.0 0 g 0 0 0 0 325.0 350.0 651.0 17.0 41.0 4.0 7.0 2.0 5.0 651.0 651.0 24.0 7.0 186.0 101.0 0 t 0 0 0 0 43.0 7.0 7.0 651.0 104.0 15.0 0.0 3.0 0.0 1.0 64.0 651.0 35.0 9.0 159.0 0

MA1574.1_shift4 (THRB)
; oligos_7nt_mkv4_m34 versus MA1574.1 (THRB); m=20/52; ncol2=15; w=10; offset=-5; strand=D; shift=4; score=0.506705; ----rrGGTCAAAGGTCRb- ; cor=; Ncor= a 0 0 0 0 2306.0 4047.0 167.0 104.0 20.0 35.0 8626.0 8626.0 8626.0 24.0 36.0 23.0 136.0 8626.0 1936.0 0 c 0 0 0 0 1397.0 234.0 52.0 14.0 132.0 8626.0 16.0 165.0 43.0 6.0 14.0 246.0 8626.0 148.0 2190.0 0 g 0 0 0 0 3705.0 4579.0 8626.0 8626.0 726.0 824.0 817.0 2025.0 1900.0 8626.0 8626.0 1400.0 726.0 3668.0 2160.0 0 t 0 0 0 0 1219.0 74.0 392.0 1892.0 8626.0 1851.0 13.0 1587.0 11.0 61.0 2010.0 8626.0 2555.0 225.0 2340.0 0

MA1550.1_shift3 (PPARD)
; oligos_7nt_mkv4_m34 versus MA1550.1 (PPARD); m=21/52; ncol2=16; w=10; offset=-6; strand=D; shift=3; score=0.502793; ---arrGGTCAAAGGTCAh- ; cor=; Ncor= a 0 0 0 4797.0 4470.0 6328.0 101.0 126.0 21.0 46.0 13105.0 12527.0 12693.0 35.0 29.0 0.0 115.0 12302.0 3806.0 0 c 0 0 0 2889.0 1311.0 75.0 20.0 10.0 28.0 11669.0 0.0 34.0 7.0 12.0 1.0 39.0 11920.0 39.0 3779.0 0 g 0 0 0 2378.0 7620.0 6808.0 13067.0 12074.0 415.0 931.0 151.0 866.0 1081.0 13135.0 12249.0 406.0 655.0 1641.0 2027.0 0 t 0 0 0 3116.0 977.0 13.0 87.0 2112.0 12957.0 1894.0 0.0 400.0 0.0 45.0 1832.0 12921.0 1600.0 51.0 3568.0 0

MA0729.1_shift3 (RARA)
; oligos_7nt_mkv4_m34 versus MA0729.1 (RARA); m=22/52; ncol2=18; w=11; offset=-6; strand=D; shift=3; score=0.499893; ---rAGGTCAAAAGGTCAAk ; cor=; Ncor= a 0 0 0 250.0 507.0 0.0 1.0 0.0 2.0 528.0 526.0 526.0 522.0 0.0 0.0 3.0 0.0 540.0 539.0 2.0 c 0 0 0 1.0 1.0 0.0 0.0 5.0 707.0 0.0 0.0 0.0 5.0 0.0 0.0 0.0 705.0 0.0 36.0 0.0 g 0 0 0 513.0 35.0 745.0 746.0 1.0 26.0 4.0 28.0 3.0 4.0 759.0 754.0 0.0 0.0 1.0 30.0 228.0 t 0 0 0 4.0 0.0 0.0 19.0 559.0 0.0 0.0 162.0 37.0 0.0 1.0 101.0 546.0 2.0 0.0 181.0 328.0

MA0072.1_shift5 (RORA(var.2))
; oligos_7nt_mkv4_m34 versus MA0072.1 (RORA(var.2)); m=23/52; ncol2=14; w=10; offset=-4; strand=D; shift=5; score=0.497221; -----wwwAwbTAGGTCAr- ; cor=; Ncor= a 0 0 0 0 0 9.0 17.0 15.0 35.0 23.0 2.0 0.0 28.0 0.0 0.0 0.0 0.0 36.0 15.0 0 c 0 0 0 0 0 8.0 2.0 0.0 1.0 0.0 12.0 0.0 0.0 0.0 0.0 0.0 36.0 0.0 6.0 0 g 0 0 0 0 0 8.0 7.0 3.0 0.0 0.0 13.0 0.0 8.0 36.0 36.0 0.0 0.0 0.0 10.0 0 t 0 0 0 0 0 11.0 10.0 18.0 0.0 13.0 9.0 36.0 0.0 0.0 0.0 36.0 0.0 0.0 5.0 0

MA1110.1_rc_shift11 (NR1H4_rc)
; oligos_7nt_mkv4_m34 versus MA1110.1_rc (NR1H4_rc); m=24/52; ncol2=11; w=9; offset=2; strand=R; shift=11; score=0.490654; -----------drGGTCATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 134.0 217.0 11.0 11.0 14.0 12.0 481.0 28.0 22.0 c 0 0 0 0 0 0 0 0 0 0 0 105.0 81.0 6.0 0.0 14.0 462.0 6.0 36.0 12.0 g 0 0 0 0 0 0 0 0 0 0 0 131.0 135.0 476.0 468.0 22.0 7.0 15.0 28.0 10.0 t 0 0 0 0 0 0 0 0 0 0 0 135.0 72.0 12.0 26.0 455.0 24.0 3.0 413.0 461.0

MA0859.1_shift3 (Rarg)
; oligos_7nt_mkv4_m34 versus MA0859.1 (Rarg); m=25/52; ncol2=16; w=10; offset=-6; strand=D; shift=3; score=0.490216; ---rRGGTCAAAAGGTCAa- ; cor=; Ncor= a 0 0 0 12548.0 7220.0 3.0 0.0 20.0 3.0 8844.0 9169.0 8864.0 9211.0 1.0 0.0 6.0 0.0 9147.0 11044.0 0 c 0 0 0 1655.0 147.0 0.0 3.0 35.0 12653.0 2.0 49.0 13.0 4.0 1.0 2.0 40.0 11730.0 4.0 4836.0 0 g 0 0 0 11289.0 3074.0 12765.0 11969.0 64.0 38.0 15.0 114.0 618.0 394.0 13267.0 9298.0 51.0 67.0 82.0 2470.0 0 t 0 0 0 1309.0 5.0 0.0 1826.0 10030.0 79.0 0.0 257.0 353.0 0.0 3.0 2628.0 9774.0 105.0 1.0 5566.0 0

MA0857.1_shift10 (Rarb)
; oligos_7nt_mkv4_m34 versus MA0857.1 (Rarb); m=26/52; ncol2=16; w=10; offset=1; strand=D; shift=10; score=0.487023; ----------aAAGGTCAAA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1098.0 1348.0 1309.0 0.0 0.0 6.0 1.0 1618.0 1559.0 1443.0 c 0 0 0 0 0 0 0 0 0 0 257.0 33.0 2.0 0.0 1.0 4.0 1316.0 0.0 11.0 4.0 g 0 0 0 0 0 0 0 0 0 0 181.0 239.0 243.0 1964.0 1941.0 15.0 9.0 14.0 3.0 173.0 t 0 0 0 0 0 0 0 0 0 0 413.0 91.0 0.0 1.0 31.0 1777.0 8.0 0.0 84.0 24.0

MA0855.1_shift4 (RXRB)
; oligos_7nt_mkv4_m34 versus MA0855.1 (RXRB); m=27/52; ncol2=14; w=9; offset=-5; strand=D; shift=4; score=0.486489; ----rRGGTCAAAGGTCA-- ; cor=; Ncor= a 0 0 0 0 1430.0 1659.0 14.0 1.0 0.0 37.0 5823.0 5820.0 5729.0 1.0 2.0 1.0 16.0 5738.0 0 0 c 0 0 0 0 342.0 8.0 1.0 0.0 2.0 7053.0 0.0 5.0 1.0 0.0 0.0 2.0 7053.0 13.0 0 0 g 0 0 0 0 3156.0 3737.0 3955.0 3642.0 11.0 112.0 12.0 119.0 221.0 3867.0 3745.0 19.0 102.0 299.0 0 0 t 0 0 0 0 224.0 3.0 10.0 492.0 4481.0 350.0 1.0 31.0 0.0 7.0 312.0 4431.0 184.0 3.0 0 0

MA0512.2_shift4 (Rxra)
; oligos_7nt_mkv4_m34 versus MA0512.2 (Rxra); m=28/52; ncol2=14; w=9; offset=-5; strand=D; shift=4; score=0.486412; ----grGGTCAAAGGTCA-- ; cor=; Ncor= a 0 0 0 0 12568.0 21345.0 110.0 132.0 47.0 97.0 46204.0 45275.0 45265.0 39.0 63.0 44.0 63.0 44403.0 0 0 c 0 0 0 0 5031.0 200.0 77.0 72.0 109.0 44342.0 51.0 89.0 73.0 71.0 85.0 114.0 43686.0 158.0 0 0 g 0 0 0 0 30811.0 30406.0 38290.0 36414.0 372.0 577.0 120.0 830.0 1369.0 39798.0 38185.0 267.0 348.0 2447.0 0 0 t 0 0 0 0 2084.0 75.0 159.0 4372.0 40596.0 2686.0 21.0 368.0 19.0 51.0 3335.0 39867.0 1775.0 37.0 0 0

MA0677.1_shift4 (Nr2f6)
; oligos_7nt_mkv4_m34 versus MA0677.1 (Nr2f6); m=29/52; ncol2=14; w=9; offset=-5; strand=D; shift=4; score=0.48491; ----rrGGTCAAAGGTCA-- ; cor=; Ncor= a 0 0 0 0 152.0 216.0 10.0 11.0 6.0 11.0 454.0 425.0 450.0 2.0 4.0 2.0 1.0 449.0 0 0 c 0 0 0 0 68.0 11.0 7.0 8.0 18.0 523.0 6.0 11.0 2.0 2.0 1.0 10.0 614.0 7.0 0 0 g 0 0 0 0 163.0 158.0 312.0 305.0 25.0 18.0 8.0 42.0 35.0 320.0 314.0 15.0 21.0 44.0 0 0 t 0 0 0 0 55.0 6.0 21.0 24.0 385.0 56.0 8.0 35.0 0.0 5.0 16.0 419.0 59.0 7.0 0 0

MA0856.1_shift4 (RXRG)
; oligos_7nt_mkv4_m34 versus MA0856.1 (RXRG); m=30/52; ncol2=14; w=9; offset=-5; strand=D; shift=4; score=0.483549; ----grGGTCAAAGGTCA-- ; cor=; Ncor= a 0 0 0 0 7824.0 14207.0 49.0 102.0 5.0 28.0 37922.0 34468.0 33003.0 9.0 12.0 2.0 78.0 36677.0 0 0 c 0 0 0 0 3800.0 63.0 4.0 9.0 35.0 56980.0 0.0 14.0 0.0 1.0 1.0 17.0 49963.0 43.0 0 0 g 0 0 0 0 21426.0 20865.0 23554.0 22312.0 126.0 734.0 76.0 970.0 1634.0 29532.0 27903.0 134.0 935.0 2323.0 0 0 t 0 0 0 0 1886.0 20.0 77.0 3946.0 39123.0 3942.0 4.0 574.0 5.0 20.0 3913.0 37558.0 2999.0 27.0 0 0

MA1552.1_rc_shift11 (RARB(var.3)_rc)
; oligos_7nt_mkv4_m34 versus MA1552.1_rc (RARB(var.3)_rc); m=31/52; ncol2=14; w=9; offset=2; strand=R; shift=11; score=0.472246; -----------rAGGTCAyG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 226.0 371.0 16.0 7.0 13.0 4.0 472.0 3.0 16.0 c 0 0 0 0 0 0 0 0 0 0 0 55.0 45.0 8.0 0.0 18.0 472.0 0.0 150.0 7.0 g 0 0 0 0 0 0 0 0 0 0 0 128.0 101.0 472.0 472.0 26.0 8.0 5.0 0.0 472.0 t 0 0 0 0 0 0 0 0 0 0 0 63.0 10.0 12.0 76.0 472.0 16.0 3.0 322.0 5.0

MA0014.3_rc_shift11 (PAX5_rc)
; oligos_7nt_mkv4_m34 versus MA0014.3_rc (PAX5_rc); m=32/52; ncol2=12; w=9; offset=2; strand=R; shift=11; score=0.471088; -----------vkGGTCACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 387.0 318.0 144.0 18.0 60.0 4.0 1200.0 23.0 84.0 c 0 0 0 0 0 0 0 0 0 0 0 359.0 312.0 118.0 57.0 70.0 1355.0 30.0 1243.0 34.0 g 0 0 0 0 0 0 0 0 0 0 0 403.0 405.0 1081.0 1305.0 39.0 37.0 88.0 35.0 1276.0 t 0 0 0 0 0 0 0 0 0 0 0 263.0 377.0 69.0 32.0 1243.0 16.0 94.0 111.0 18.0

MA1538.1_rc_shift11 (NR2F1(var.3)_rc)
; oligos_7nt_mkv4_m34 versus MA1538.1_rc (NR2F1(var.3)_rc); m=33/52; ncol2=15; w=9; offset=2; strand=R; shift=11; score=0.470263; -----------rRGGTCAaY ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1825.0 2566.0 50.0 45.0 0.0 12.0 3515.0 990.0 4.0 c 0 0 0 0 0 0 0 0 0 0 0 205.0 32.0 75.0 1.0 0.0 3515.0 52.0 858.0 1041.0 g 0 0 0 0 0 0 0 0 0 0 0 1177.0 949.0 3515.0 3515.0 95.0 15.0 89.0 855.0 58.0 t 0 0 0 0 0 0 0 0 0 0 0 308.0 57.0 131.0 0.0 3515.0 81.0 0.0 813.0 2473.0

MA1151.1_shift6 (RORC)
; oligos_7nt_mkv4_m34 versus MA1151.1 (RORC); m=34/52; ncol2=12; w=9; offset=-3; strand=D; shift=6; score=0.469344; ------dwAwgTrGGtCA-- ; cor=; Ncor= a 0 0 0 0 0 0 306.0 329.0 855.0 527.0 225.0 43.0 623.0 5.0 36.0 59.0 6.0 785.0 0 0 c 0 0 0 0 0 0 179.0 114.0 14.0 10.0 249.0 87.0 24.0 2.0 3.0 112.0 822.0 12.0 0 0 g 0 0 0 0 0 0 260.0 141.0 11.0 32.0 277.0 116.0 343.0 919.0 952.0 168.0 19.0 161.0 0 0 t 0 0 0 0 0 0 255.0 416.0 120.0 431.0 249.0 753.0 11.0 74.0 8.0 661.0 153.0 42.0 0 0

MA1539.1_rc_shift11 (NR2F6(var.3)_rc)
; oligos_7nt_mkv4_m34 versus MA1539.1_rc (NR2F6(var.3)_rc); m=35/52; ncol2=15; w=9; offset=2; strand=R; shift=11; score=0.467942; -----------rAGGTCAvT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 6376.0 8905.0 24.0 36.0 3.0 9.0 11749.0 2952.0 46.0 c 0 0 0 0 0 0 0 0 0 0 0 718.0 26.0 9.0 0.0 107.0 11749.0 67.0 2972.0 2634.0 g 0 0 0 0 0 0 0 0 0 0 0 3745.0 2844.0 11749.0 11749.0 255.0 206.0 333.0 3333.0 39.0 t 0 0 0 0 0 0 0 0 0 0 0 910.0 23.0 82.0 159.0 11749.0 387.0 66.0 2492.0 9114.0

MA1553.1_rc_shift11 (RARG(var.3)_rc)
; oligos_7nt_mkv4_m34 versus MA1553.1_rc (RARG(var.3)_rc); m=36/52; ncol2=14; w=9; offset=2; strand=R; shift=11; score=0.46557; -----------rAGGTCATG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1736.0 2756.0 48.0 12.0 200.0 12.0 3442.0 22.0 150.0 c 0 0 0 0 0 0 0 0 0 0 0 282.0 275.0 18.0 5.0 128.0 3442.0 13.0 835.0 58.0 g 0 0 0 0 0 0 0 0 0 0 0 998.0 687.0 3442.0 3442.0 196.0 46.0 50.0 9.0 3442.0 t 0 0 0 0 0 0 0 0 0 0 0 427.0 54.0 106.0 997.0 3442.0 91.0 33.0 2607.0 28.0

MA0860.1_shift11 (Rarg(var.2))
; oligos_7nt_mkv4_m34 versus MA0860.1 (Rarg(var.2)); m=37/52; ncol2=17; w=9; offset=2; strand=D; shift=11; score=0.462142; -----------AAGGTCAms ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 4074.0 4543.0 0.0 0.0 0.0 2.0 4044.0 1394.0 314.0 c 0 0 0 0 0 0 0 0 0 0 0 10.0 7.0 4.0 0.0 11.0 6256.0 3.0 2677.0 1778.0 g 0 0 0 0 0 0 0 0 0 0 0 806.0 267.0 5888.0 5573.0 12.0 0.0 12.0 386.0 2442.0 t 0 0 0 0 0 0 0 0 0 0 0 31.0 0.0 2.0 200.0 4309.0 0.0 0.0 780.0 595.0

MA1556.1_shift11 (RXRG(var.2))
; oligos_7nt_mkv4_m34 versus MA1556.1 (RXRG(var.2)); m=38/52; ncol2=14; w=9; offset=2; strand=D; shift=11; score=0.456537; -----------rrGGTCAyG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 803.0 1264.0 0.0 7.0 12.0 0.0 2117.0 0.0 64.0 c 0 0 0 0 0 0 0 0 0 0 0 164.0 7.0 107.0 31.0 5.0 2117.0 15.0 838.0 55.0 g 0 0 0 0 0 0 0 0 0 0 0 1071.0 853.0 2117.0 2117.0 33.0 1.0 0.0 0.0 2117.0 t 0 0 0 0 0 0 0 0 0 0 0 79.0 0.0 0.0 99.0 2117.0 16.0 0.0 1279.0 26.0

MA0067.1_shift13 (Pax2)
; oligos_7nt_mkv4_m34 versus MA0067.1 (Pax2); m=39/52; ncol2=8; w=7; offset=4; strand=D; shift=13; score=0.451833; -------------wgTCAyk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 0 10.0 7.0 3.0 0.0 26.0 2.0 2.0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 7.0 1.0 2.0 28.0 1.0 17.0 0.0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 5.0 21.0 0.0 1.0 3.0 1.0 19.0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 9.0 2.0 26.0 2.0 1.0 11.0 10.0

MA0504.1_shift10 (NR2C2)
; oligos_7nt_mkv4_m34 versus MA0504.1 (NR2C2); m=40/52; ncol2=15; w=10; offset=1; strand=D; shift=10; score=0.44637; ----------mgrGGTCArA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 129.0 82.0 193.0 0.0 10.0 3.0 6.0 343.0 187.0 324.0 c 0 0 0 0 0 0 0 0 0 0 126.0 70.0 6.0 8.0 3.0 0.0 309.0 0.0 0.0 0.0 g 0 0 0 0 0 0 0 0 0 0 90.0 221.0 195.0 366.0 355.0 79.0 54.0 48.0 208.0 71.0 t 0 0 0 0 0 0 0 0 0 0 50.0 22.0 1.0 21.0 27.0 313.0 26.0 4.0 0.0 0.0

MA1148.1_shift1 (PPARA::RXRA)
; oligos_7nt_mkv4_m34 versus MA1148.1 (PPARA::RXRA); m=41/52; ncol2=18; w=10; offset=-8; strand=D; shift=1; score=0.443644; -awgtrGGtcAaAGGTcAt- ; cor=; Ncor= a 0 548.0 431.0 247.0 61.0 492.0 68.0 80.0 42.0 131.0 887.0 669.0 807.0 111.0 18.0 17.0 90.0 689.0 222.0 0 c 0 140.0 73.0 211.0 94.0 95.0 19.0 15.0 157.0 445.0 16.0 24.0 25.0 16.0 14.0 49.0 598.0 37.0 237.0 0 g 0 108.0 60.0 332.0 238.0 370.0 843.0 856.0 245.0 201.0 67.0 208.0 143.0 862.0 784.0 115.0 146.0 230.0 243.0 0 t 0 204.0 437.0 210.0 608.0 42.0 71.0 49.0 556.0 223.0 30.0 99.0 25.0 11.0 184.0 818.0 166.0 43.0 298.0 0

MA0730.1_shift1 (RARA(var.2))
; oligos_7nt_mkv4_m34 versus MA0730.1 (RARA(var.2)); m=42/52; ncol2=17; w=9; offset=-8; strand=D; shift=1; score=0.441873; -AGGTCAysyaRAGGTCA-- ; cor=; Ncor= a 0 1089.0 0.0 0.0 6.0 10.0 1391.0 301.0 213.0 147.0 972.0 1015.0 1126.0 2.0 1.0 8.0 4.0 1486.0 0 0 c 0 24.0 0.0 2.0 11.0 1980.0 16.0 397.0 432.0 677.0 118.0 17.0 16.0 0.0 7.0 11.0 1923.0 3.0 0 0 g 0 313.0 1488.0 1451.0 17.0 9.0 11.0 84.0 584.0 157.0 198.0 348.0 269.0 1455.0 1440.0 13.0 26.0 25.0 0 0 t 0 0.0 2.0 71.0 1143.0 21.0 2.0 581.0 223.0 502.0 228.0 7.0 1.0 4.0 35.0 1131.0 22.0 10.0 0 0

MA0728.1_shift3 (Nr2f6(var.2))
; oligos_7nt_mkv4_m34 versus MA0728.1 (Nr2f6(var.2)); m=43/52; ncol2=15; w=9; offset=-6; strand=D; shift=3; score=0.440632; ---rAGGTCAArAGGTCA-- ; cor=; Ncor= a 0 0 0 100.0 265.0 0.0 1.0 0.0 0.0 494.0 406.0 165.0 258.0 0.0 0.0 2.0 0.0 446.0 0 0 c 0 0 0 16.0 0.0 0.0 0.0 0.0 667.0 30.0 4.0 0.0 0.0 0.0 0.0 0.0 678.0 0.0 0 0 g 0 0 0 172.0 53.0 210.0 183.0 1.0 1.0 0.0 7.0 94.0 0.0 324.0 155.0 0.0 0.0 9.0 0 0 t 0 0 0 0.0 3.0 0.0 0.0 378.0 51.0 1.0 9.0 59.0 0.0 0.0 5.0 369.0 3.0 0.0 0 0

MA1555.1_rc_shift11 (RXRB(var.2)_rc)
; oligos_7nt_mkv4_m34 versus MA1555.1_rc (RXRB(var.2)_rc); m=44/52; ncol2=14; w=9; offset=2; strand=R; shift=11; score=0.438414; -----------rrGGTCAyG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 617.0 937.0 58.0 23.0 14.0 8.0 1803.0 7.0 123.0 c 0 0 0 0 0 0 0 0 0 0 0 194.0 14.0 32.0 11.0 41.0 1803.0 0.0 596.0 41.0 g 0 0 0 0 0 0 0 0 0 0 0 868.0 866.0 1803.0 1803.0 53.0 35.0 59.0 15.0 1803.0 t 0 0 0 0 0 0 0 0 0 0 0 124.0 18.0 58.0 309.0 1803.0 92.0 11.0 1207.0 23.0

MA1576.1_rc_shift10 (THRB(var.3)_rc)
; oligos_7nt_mkv4_m34 versus MA1576.1_rc (THRB(var.3)_rc); m=45/52; ncol2=19; w=10; offset=1; strand=R; shift=10; score=0.438348; ----------TrAGGTCAyg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0.0 214.0 389.0 4.0 2.0 86.0 3.0 393.0 0.0 54.0 c 0 0 0 0 0 0 0 0 0 0 74.0 73.0 0.0 3.0 0.0 0.0 389.0 6.0 205.0 71.0 g 0 0 0 0 0 0 0 0 0 0 8.0 175.0 9.0 389.0 389.0 11.0 0.0 0.0 86.0 221.0 t 0 0 0 0 0 0 0 0 0 0 323.0 0.0 0.0 7.0 0.0 389.0 0.0 0.0 102.0 42.0

MA0858.1_shift1 (Rarb(var.2))
; oligos_7nt_mkv4_m34 versus MA0858.1 (Rarb(var.2)); m=46/52; ncol2=17; w=9; offset=-8; strand=D; shift=1; score=0.437623; -AGGTCAhmyarAGGTCA-- ; cor=; Ncor= a 0 610.0 0.0 2.0 0.0 1.0 728.0 293.0 249.0 38.0 438.0 398.0 639.0 1.0 0.0 0.0 0.0 693.0 0 0 c 0 3.0 1.0 1.0 2.0 686.0 0.0 210.0 252.0 239.0 34.0 4.0 0.0 1.0 2.0 3.0 765.0 0.0 0 0 g 0 39.0 713.0 663.0 0.0 2.0 4.0 15.0 140.0 116.0 41.0 218.0 37.0 682.0 663.0 4.0 0.0 2.0 0 0 t 0 0.0 0.0 22.0 694.0 1.0 0.0 204.0 64.0 281.0 158.0 4.0 1.0 0.0 26.0 674.0 4.0 1.0 0 0

MA0112.3_shift11 (ESR1)
; oligos_7nt_mkv4_m34 versus MA0112.3 (ESR1); m=47/52; ncol2=17; w=9; offset=2; strand=D; shift=11; score=0.434644; -----------arGGTCAcs ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 232.0 402.0 0.0 2.0 0.0 1.0 471.0 108.0 127.0 c 0 0 0 0 0 0 0 0 0 0 0 65.0 6.0 0.0 0.0 0.0 452.0 0.0 338.0 223.0 g 0 0 0 0 0 0 0 0 0 0 0 101.0 206.0 623.0 638.0 3.0 0.0 30.0 53.0 340.0 t 0 0 0 0 0 0 0 0 0 0 0 88.0 0.0 34.0 0.0 549.0 2.0 0.0 23.0 65.0

MA1575.1_shift0 (THRB(var.2))
; oligos_7nt_mkv4_m34 versus MA1575.1 (THRB(var.2)); m=48/52; ncol2=19; w=10; offset=-9; strand=D; shift=0; score=0.428917; gTGwCCTyrhyrAGGwCAc- ; cor=; Ncor= a 1010.0 26.0 252.0 4111.0 29.0 1.0 0.0 286.0 2454.0 1060.0 63.0 1469.0 4111.0 0.0 0.0 1688.0 199.0 4111.0 835.0 0 c 624.0 618.0 642.0 351.0 4111.0 4111.0 1178.0 1512.0 241.0 1033.0 1266.0 904.0 106.0 3.0 0.0 470.0 4111.0 5.0 1649.0 0 g 1640.0 15.0 4111.0 432.0 2.0 2.0 77.0 872.0 1353.0 939.0 312.0 1488.0 1233.0 4111.0 4111.0 303.0 686.0 629.0 610.0 0 t 837.0 4111.0 230.0 1787.0 0.0 8.0 4111.0 1441.0 63.0 1079.0 2470.0 251.0 2.0 0.0 30.0 4111.0 291.0 5.0 1017.0 0

MA0258.2_shift12 (ESR2)
; oligos_7nt_mkv4_m34 versus MA0258.2 (ESR2); m=49/52; ncol2=15; w=8; offset=3; strand=D; shift=12; score=0.428141; ------------rGGTCAsm ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 5410.0 429.0 59.0 74.0 0.0 8098.0 502.0 2092.0 c 0 0 0 0 0 0 0 0 0 0 0 0 96.0 0.0 0.0 147.0 7621.0 1.0 4202.0 3235.0 g 0 0 0 0 0 0 0 0 0 0 0 0 2563.0 7170.0 8143.0 989.0 533.0 57.0 2738.0 1688.0 t 0 0 0 0 0 0 0 0 0 0 0 0 174.0 644.0 41.0 7033.0 89.0 87.0 801.0 1228.0

MA0065.2_shift3 (Pparg::Rxra)
; oligos_7nt_mkv4_m34 versus MA0065.2 (Pparg::Rxra); m=50/52; ncol2=15; w=9; offset=-6; strand=D; shift=3; score=0.415989; ---strGGgcArAGGkcA-- ; cor=; Ncor= a 0 0 0 94.0 101.0 390.0 100.0 139.0 145.0 71.0 819.0 522.0 713.0 82.0 41.0 22.0 54.0 676.0 0 0 c 0 0 0 317.0 166.0 23.0 3.0 15.0 129.0 547.0 21.0 48.0 5.0 2.0 9.0 99.0 555.0 58.0 0 0 g 0 0 0 320.0 127.0 368.0 671.0 674.0 395.0 179.0 15.0 270.0 137.0 767.0 693.0 263.0 144.0 47.0 0 0 t 0 0 0 126.0 464.0 79.0 87.0 34.0 193.0 66.0 8.0 23.0 9.0 12.0 120.0 479.0 109.0 81.0 0 0

MA0494.1_rc_shift9 (Nr1h3::Rxra_rc)
; oligos_7nt_mkv4_m34 versus MA0494.1_rc (Nr1h3::Rxra_rc); m=51/52; ncol2=19; w=11; offset=0; strand=R; shift=9; score=0.411838; ---------cmrrGGTyACy ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 303.0 459.0 430.0 714.0 112.0 32.0 0.0 193.0 1188.0 69.0 154.0 c 0 0 0 0 0 0 0 0 0 439.0 333.0 196.0 42.0 0.0 20.0 192.0 440.0 4.0 903.0 321.0 g 0 0 0 0 0 0 0 0 0 290.0 196.0 508.0 502.0 1040.0 962.0 177.0 77.0 0.0 19.0 0.0 t 0 0 0 0 0 0 0 0 0 237.0 281.0 135.0 11.0 117.0 255.0 900.0 559.0 77.0 278.0 794.0

MA1146.1_rc_shift11 (NR1H4::RXRA_rc)
; oligos_7nt_mkv4_m34 versus MA1146.1_rc (NR1H4::RXRA_rc); m=52/52; ncol2=15; w=9; offset=2; strand=R; shift=11; score=0.40357; -----------rrGGTCAaT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 380.0 521.0 51.0 83.0 48.0 37.0 838.0 660.0 17.0 c 0 0 0 0 0 0 0 0 0 0 0 212.0 71.0 38.0 9.0 78.0 753.0 48.0 75.0 249.0 g 0 0 0 0 0 0 0 0 0 0 0 313.0 383.0 798.0 773.0 112.0 102.0 92.0 121.0 13.0 t 0 0 0 0 0 0 0 0 0 0 0 95.0 25.0 113.0 134.0 763.0 108.0 23.0 144.0 720.0

One-to-n matrix alignment; reference matrix: dyads_m20_shift5 ; 35 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m20_shift5 (dyads_m20dyads_m20)
; dyads_m20 (dyads_m20dyads_m20); m=0 (reference); ncol1=11; shift=5; ncol=19; -----gvTGACTCAbv--- ; Alignment reference a 0 0 0 0 0 60 85 0 4 340 8 0 8 338 21 91 0 0 0 c 0 0 0 0 0 83 103 0 0 0 316 1 331 0 115 101 0 0 0 g 0 0 0 0 0 119 141 0 332 0 8 2 0 1 115 86 0 0 0 t 0 0 0 0 0 78 11 340 4 0 8 337 1 1 89 62 0 0 0

MA1634.1_shift5 (BATF)
; dyads_m20 versus MA1634.1 (BATF); m=1/34; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.962254; -----waTGACTCAth--- ; cor=; Ncor= a 0 0 0 0 0 13555.0 22575.0 483.0 1139.0 45946.0 2051.0 1130.0 4742.0 45316.0 8146.0 16139.0 0 0 0 c 0 0 0 0 0 5742.0 8931.0 355.0 570.0 250.0 37333.0 306.0 40279.0 431.0 7566.0 12048.0 0 0 0 g 0 0 0 0 0 11492.0 8627.0 283.0 40617.0 341.0 5573.0 836.0 711.0 507.0 9681.0 5919.0 0 0 0 t 0 0 0 0 0 16219.0 6875.0 45887.0 4682.0 471.0 2051.0 44736.0 1276.0 754.0 21615.0 12902.0 0 0 0

MA0462.2_shift5 (BATF::JUN)
; dyads_m20 versus MA0462.2 (BATF::JUN); m=2/34; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.961848; -----waTGACTCAth--- ; cor=; Ncor= a 0 0 0 0 0 10765.0 18789.0 367.0 834.0 37280.0 1399.0 755.0 3955.0 36854.0 6299.0 13407.0 0 0 0 c 0 0 0 0 0 4762.0 7260.0 275.0 400.0 204.0 31168.0 241.0 32770.0 318.0 6105.0 9668.0 0 0 0 g 0 0 0 0 0 9317.0 6729.0 182.0 33135.0 350.0 4188.0 539.0 522.0 424.0 7745.0 4923.0 0 0 0 t 0 0 0 0 0 13310.0 5376.0 37330.0 3785.0 320.0 1399.0 36619.0 907.0 558.0 18005.0 10156.0 0 0 0

MA0835.2_shift5 (BATF3)
; dyads_m20 versus MA0835.2 (BATF3); m=3/34; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.953646; -----waTGACTCAtw--- ; cor=; Ncor= a 0 0 0 0 0 3609.0 6137.0 132.0 245.0 11670.0 408.0 267.0 1248.0 11529.0 2334.0 4521.0 0 0 0 c 0 0 0 0 0 1245.0 2106.0 59.0 62.0 92.0 10589.0 79.0 10347.0 84.0 1664.0 2733.0 0 0 0 g 0 0 0 0 0 2608.0 1831.0 37.0 10420.0 87.0 560.0 117.0 88.0 117.0 2249.0 1255.0 0 0 0 t 0 0 0 0 0 4503.0 1891.0 11737.0 1238.0 116.0 408.0 11502.0 282.0 235.0 5718.0 3456.0 0 0 0

MA0476.1_shift5 (FOS)
; dyads_m20 versus MA0476.1 (FOS); m=4/34; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.921278; -----dvTGAsTCATb--- ; cor=; Ncor= a 0 0 0 0 0 7879.0 7475.0 0.0 0.0 29396.0 998.0 0.0 0.0 29396.0 258.0 4006.0 0 0 0 c 0 0 0 0 0 712.0 10177.0 0.0 0.0 0.0 14079.0 0.0 29396.0 0.0 5823.0 8236.0 0 0 0 g 0 0 0 0 0 9686.0 10841.0 0.0 27108.0 0.0 11206.0 0.0 0.0 0.0 1538.0 7897.0 0 0 0 t 0 0 0 0 0 11119.0 903.0 29396.0 2288.0 0.0 3113.0 29396.0 0.0 0.0 21777.0 9257.0 0 0 0

MA1130.1_rc_shift5 (FOSL2::JUN_rc)
; dyads_m20 versus MA1130.1_rc (FOSL2::JUN_rc); m=5/34; ncol2=12; w=11; offset=0; strand=R; shift=5; score=0.874517; -----krTGACTCAymm-- ; cor=; Ncor= a 0 0 0 0 0 209.0 589.0 1.0 1.0 998.0 58.0 29.0 158.0 998.0 55.0 269.0 268.0 0 0 c 0 0 0 0 0 180.0 93.0 1.0 1.0 1.0 698.0 1.0 840.0 1.0 282.0 338.0 295.0 0 0 g 0 0 0 0 0 341.0 299.0 0.0 979.0 1.0 141.0 123.0 1.0 1.0 121.0 179.0 248.0 0 0 t 0 0 0 0 0 269.0 19.0 998.0 20.0 1.0 103.0 847.0 1.0 1.0 542.0 214.0 189.0 0 0

MA0841.1_shift5 (NFE2)
; dyads_m20 versus MA0841.1 (NFE2); m=6/34; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.873446; -----vATGACTCATs--- ; cor=; Ncor= a 0 0 0 0 0 5589.0 18831.0 2.0 0.0 18831.0 37.0 0.0 1.0 18831.0 0.0 487.0 0 0 0 c 0 0 0 0 0 7208.0 9.0 8.0 0.0 11.0 14360.0 20.0 18831.0 13.0 2689.0 9860.0 0 0 0 g 0 0 0 0 0 5303.0 1306.0 0.0 18831.0 0.0 4472.0 3.0 0.0 8.0 10.0 5067.0 0 0 0 t 0 0 0 0 0 731.0 5.0 18831.0 2.0 4.0 17.0 18831.0 3.0 5.0 18831.0 3417.0 0 0 0

MA0099.3_rc_shift5 (FOS::JUN_rc)
; dyads_m20 versus MA0099.3_rc (FOS::JUN_rc); m=7/34; ncol2=10; w=10; offset=0; strand=R; shift=5; score=0.862799; -----krTGACTCAy---- ; cor=; Ncor= a 0 0 0 0 0 162.0 568.0 4.0 4.0 991.0 54.0 45.0 168.0 990.0 40.0 0 0 0 0 c 0 0 0 0 0 164.0 95.0 2.0 3.0 2.0 688.0 4.0 824.0 2.0 257.0 0 0 0 0 g 0 0 0 0 0 397.0 313.0 2.0 963.0 2.0 180.0 131.0 1.0 5.0 111.0 0 0 0 0 t 0 0 0 0 0 277.0 24.0 992.0 30.0 5.0 78.0 820.0 7.0 3.0 592.0 0 0 0 0

MA1134.1_rc_shift4 (FOS::JUNB_rc)
; dyads_m20 versus MA1134.1_rc (FOS::JUNB_rc); m=8/34; ncol2=12; w=11; offset=-1; strand=R; shift=4; score=0.858248; ----bkrTGAsTCAym--- ; cor=; Ncor= a 0 0 0 0 156.0 184.0 658.0 1.0 1.0 996.0 25.0 4.0 131.0 998.0 36.0 286.0 0 0 0 c 0 0 0 0 256.0 178.0 51.0 1.0 1.0 3.0 618.0 1.0 868.0 1.0 267.0 372.0 0 0 0 g 0 0 0 0 304.0 363.0 284.0 1.0 971.0 1.0 309.0 30.0 1.0 1.0 105.0 168.0 0 0 0 t 0 0 0 0 283.0 275.0 7.0 998.0 27.0 1.0 48.0 965.0 1.0 1.0 593.0 174.0 0 0 0

MA1135.1_shift5 (FOSB::JUNB)
; dyads_m20 versus MA1135.1 (FOSB::JUNB); m=9/34; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.853716; -----krTGAsTCAy---- ; cor=; Ncor= a 0 0 0 0 0 119.0 598.0 1.0 1.0 997.0 34.0 2.0 191.0 998.0 37.0 0 0 0 0 c 0 0 0 0 0 182.0 61.0 0.0 0.0 1.0 596.0 1.0 808.0 0.0 259.0 0 0 0 0 g 0 0 0 0 0 429.0 321.0 1.0 980.0 1.0 309.0 39.0 1.0 1.0 126.0 0 0 0 0 t 0 0 0 0 0 270.0 20.0 998.0 19.0 1.0 61.0 958.0 1.0 1.0 578.0 0 0 0 0

MA1144.1_shift5 (FOSL2::JUND)
; dyads_m20 versus MA1144.1 (FOSL2::JUND); m=10/34; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.853006; -----krTGAsTCAy---- ; cor=; Ncor= a 0 0 0 0 0 137.0 634.0 0.0 0.0 998.0 46.0 6.0 140.0 999.0 38.0 0 0 0 0 c 0 0 0 0 0 143.0 60.0 0.0 0.0 1.0 604.0 0.0 860.0 0.0 266.0 0 0 0 0 g 0 0 0 0 0 446.0 291.0 0.0 990.0 0.0 292.0 60.0 0.0 0.0 113.0 0 0 0 0 t 0 0 0 0 0 275.0 14.0 999.0 10.0 0.0 58.0 934.0 0.0 0.0 583.0 0 0 0 0

MA1138.1_shift5 (FOSL2::JUNB)
; dyads_m20 versus MA1138.1 (FOSL2::JUNB); m=11/34; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.850252; -----krTGAsTCAy---- ; cor=; Ncor= a 0 0 0 0 0 151.0 621.0 0.0 0.0 999.0 54.0 1.0 168.0 999.0 35.0 0 0 0 0 c 0 0 0 0 0 164.0 53.0 0.0 0.0 0.0 568.0 0.0 831.0 0.0 251.0 0 0 0 0 g 0 0 0 0 0 407.0 314.0 0.0 985.0 0.0 292.0 26.0 0.0 0.0 112.0 0 0 0 0 t 0 0 0 0 0 277.0 13.0 999.0 14.0 0.0 85.0 973.0 0.0 0.0 602.0 0 0 0 0

MA1142.1_shift5 (FOSL1::JUND)
; dyads_m20 versus MA1142.1 (FOSL1::JUND); m=12/34; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.843806; -----rrTGActmAt---- ; cor=; Ncor= a 0 0 0 0 0 265.0 551.0 30.0 22.0 864.0 49.0 98.0 270.0 912.0 174.0 0 0 0 0 c 0 0 0 0 0 221.0 127.0 23.0 61.0 12.0 581.0 45.0 641.0 40.0 212.0 0 0 0 0 g 0 0 0 0 0 279.0 282.0 34.0 777.0 82.0 191.0 187.0 25.0 17.0 144.0 0 0 0 0 t 0 0 0 0 0 235.0 40.0 913.0 140.0 41.0 180.0 669.0 64.0 31.0 470.0 0 0 0 0

MA1132.1_shift5 (JUN::JUNB)
; dyads_m20 versus MA1132.1 (JUN::JUNB); m=13/34; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.832539; -----kaTGACkCAt---- ; cor=; Ncor= a 0 0 0 0 0 203.0 627.0 11.0 10.0 944.0 27.0 58.0 161.0 931.0 188.0 0 0 0 0 c 0 0 0 0 0 128.0 134.0 10.0 21.0 10.0 826.0 24.0 707.0 24.0 248.0 0 0 0 0 g 0 0 0 0 0 408.0 189.0 34.0 921.0 28.0 115.0 353.0 10.0 18.0 64.0 0 0 0 0 t 0 0 0 0 0 261.0 50.0 946.0 47.0 18.0 33.0 565.0 122.0 27.0 500.0 0 0 0 0

MA1141.1_rc_shift4 (FOS::JUND_rc)
; dyads_m20 versus MA1141.1_rc (FOS::JUND_rc); m=14/34; ncol2=13; w=11; offset=-1; strand=R; shift=4; score=0.810061; ----bkrTGACTCAymm-- ; cor=; Ncor= a 0 0 0 0 180.0 185.0 612.0 0.0 0.0 999.0 19.0 15.0 129.0 999.0 38.0 263.0 258.0 0 0 c 0 0 0 0 292.0 195.0 77.0 0.0 0.0 0.0 867.0 0.0 871.0 0.0 266.0 389.0 315.0 0 0 g 0 0 0 0 264.0 370.0 290.0 0.0 970.0 0.0 40.0 91.0 0.0 1.0 104.0 167.0 244.0 0 0 t 0 0 0 0 264.0 250.0 21.0 999.0 29.0 0.0 75.0 894.0 0.0 0.0 593.0 182.0 183.0 0 0

MA1128.1_shift4 (FOSL1::JUN)
; dyads_m20 versus MA1128.1 (FOSL1::JUN); m=15/34; ncol2=13; w=11; offset=-1; strand=D; shift=4; score=0.806753; ----kkrTGACTCAtmm-- ; cor=; Ncor= a 0 0 0 0 208.0 172.0 602.0 1.0 3.0 994.0 26.0 33.0 159.0 984.0 57.0 296.0 277.0 0 0 c 0 0 0 0 246.0 159.0 89.0 2.0 2.0 2.0 826.0 2.0 835.0 4.0 245.0 308.0 289.0 0 0 g 0 0 0 0 253.0 380.0 283.0 1.0 957.0 2.0 51.0 140.0 2.0 9.0 119.0 173.0 237.0 0 0 t 0 0 0 0 293.0 289.0 26.0 996.0 38.0 3.0 97.0 826.0 4.0 4.0 579.0 223.0 196.0 0 0

MA0477.2_shift4 (FOSL1)
; dyads_m20 versus MA0477.2 (FOSL1); m=16/34; ncol2=13; w=11; offset=-1; strand=D; shift=4; score=0.803529; ----draTGACTCAthy-- ; cor=; Ncor= a 0 0 0 0 14979.0 15921.0 35056.0 260.0 515.0 56806.0 2557.0 1060.0 3133.0 56408.0 2716.0 14671.0 13956.0 0 0 c 0 0 0 0 12491.0 11018.0 6703.0 460.0 301.0 287.0 43918.0 163.0 53711.0 344.0 10399.0 15640.0 17637.0 0 0 g 0 0 0 0 14848.0 16855.0 13127.0 183.0 54619.0 286.0 8615.0 598.0 278.0 566.0 6533.0 12314.0 11065.0 0 0 t 0 0 0 0 15363.0 13887.0 2795.0 56778.0 2246.0 302.0 2591.0 55860.0 559.0 363.0 38033.0 15056.0 15023.0 0 0

MA0478.1_shift4 (FOSL2)
; dyads_m20 versus MA0478.1 (FOSL2); m=17/34; ncol2=11; w=10; offset=-1; strand=D; shift=4; score=0.794648; ----krrTGAsTCAb---- ; cor=; Ncor= a 0 0 0 0 833.0 1525.0 2861.0 0.0 0.0 5075.0 0.0 0.0 205.0 5318.0 0.0 0 0 0 0 c 0 0 0 0 994.0 592.0 55.0 0.0 0.0 51.0 3286.0 0.0 5113.0 0.0 1399.0 0 0 0 0 g 0 0 0 0 2086.0 2707.0 2328.0 0.0 5318.0 192.0 1838.0 0.0 0.0 0.0 1933.0 0 0 0 0 t 0 0 0 0 1405.0 494.0 74.0 5318.0 0.0 0.0 194.0 5318.0 0.0 0.0 1986.0 0 0 0 0

MA1137.1_shift4 (FOSL1::JUNB)
; dyads_m20 versus MA1137.1 (FOSL1::JUNB); m=18/34; ncol2=13; w=11; offset=-1; strand=D; shift=4; score=0.794224; ----ykrTGAcTMAtmc-- ; cor=; Ncor= a 0 0 0 0 237.0 216.0 566.0 23.0 36.0 917.0 63.0 59.0 271.0 904.0 53.0 300.0 247.0 0 0 c 0 0 0 0 269.0 146.0 100.0 16.0 21.0 20.0 626.0 23.0 683.0 21.0 225.0 298.0 300.0 0 0 g 0 0 0 0 195.0 376.0 287.0 16.0 880.0 21.0 198.0 115.0 9.0 38.0 170.0 204.0 223.0 0 0 t 0 0 0 0 300.0 263.0 47.0 945.0 63.0 42.0 113.0 803.0 37.0 37.0 552.0 198.0 230.0 0 0

MA0491.2_shift4 (JUND)
; dyads_m20 versus MA0491.2 (JUND); m=19/34; ncol2=13; w=11; offset=-1; strand=D; shift=4; score=0.78251; ----wraTGACTCAThh-- ; cor=; Ncor= a 0 0 0 0 28467.0 29234.0 70166.0 644.0 1365.0 103797.0 4634.0 2053.0 4915.0 103420.0 2796.0 27969.0 28212.0 0 0 c 0 0 0 0 21965.0 19712.0 10173.0 757.0 873.0 650.0 76028.0 496.0 98628.0 751.0 12025.0 28250.0 29793.0 0 0 g 0 0 0 0 25006.0 31347.0 20586.0 443.0 99787.0 573.0 20633.0 1147.0 953.0 965.0 7908.0 22249.0 19236.0 0 0 t 0 0 0 0 30507.0 25652.0 5020.0 104101.0 3920.0 925.0 4650.0 102249.0 1449.0 809.0 83216.0 27477.0 28704.0 0 0

MA0490.2_shift4 (JUNB)
; dyads_m20 versus MA0490.2 (JUNB); m=20/34; ncol2=13; w=11; offset=-1; strand=D; shift=4; score=0.781559; ----wdATGACTCATwh-- ; cor=; Ncor= a 0 0 0 0 22772.0 23561.0 56607.0 538.0 770.0 78101.0 4755.0 1999.0 5243.0 77675.0 3722.0 21544.0 21137.0 0 0 c 0 0 0 0 16583.0 15807.0 7817.0 654.0 550.0 523.0 59784.0 289.0 73199.0 588.0 8876.0 19230.0 20653.0 0 0 g 0 0 0 0 18150.0 20403.0 11566.0 322.0 74757.0 550.0 10519.0 913.0 617.0 900.0 7508.0 16491.0 15068.0 0 0 t 0 0 0 0 22351.0 20085.0 3866.0 78342.0 3779.0 682.0 4798.0 76655.0 797.0 693.0 59750.0 22591.0 22998.0 0 0

MA1633.1_shift5 (BACH1)
; dyads_m20 versus MA1633.1 (BACH1); m=21/34; ncol2=13; w=11; offset=0; strand=D; shift=5; score=0.77348; -----saTGACTCAGCaw- ; cor=; Ncor= a 0 0 0 0 0 3257.0 6929.0 105.0 97.0 15046.0 443.0 650.0 576.0 14778.0 339.0 769.0 8799.0 4492.0 0 c 0 0 0 0 0 3946.0 3833.0 267.0 149.0 230.0 12597.0 220.0 14563.0 194.0 623.0 13382.0 2167.0 3574.0 0 g 0 0 0 0 0 4835.0 3848.0 149.0 14831.0 167.0 2083.0 266.0 178.0 310.0 13050.0 858.0 1971.0 3553.0 0 t 0 0 0 0 0 3519.0 947.0 15036.0 480.0 114.0 434.0 14421.0 240.0 275.0 1545.0 548.0 2620.0 3938.0 0

MA1622.1_shift3 (Smad2::Smad3)
; dyads_m20 versus MA1622.1 (Smad2::Smad3); m=22/34; ncol2=14; w=11; offset=-2; strand=D; shift=3; score=0.764426; ---rtkrTGACTCAtwm-- ; cor=; Ncor= a 0 0 0 2995.0 2508.0 2499.0 4451.0 79.0 90.0 10141.0 627.0 247.0 711.0 10056.0 683.0 2948.0 2746.0 0 0 c 0 0 0 2254.0 2515.0 1642.0 2212.0 59.0 82.0 44.0 7480.0 53.0 9443.0 85.0 2047.0 2479.0 2595.0 0 0 g 0 0 0 2615.0 2324.0 3479.0 2888.0 56.0 9768.0 58.0 1542.0 68.0 90.0 79.0 1979.0 2154.0 2524.0 0 0 t 0 0 0 2481.0 2998.0 2725.0 794.0 10151.0 405.0 102.0 696.0 9977.0 101.0 125.0 5636.0 2764.0 2480.0 0 0

MA0655.1_shift6 (JDP2)
; dyads_m20 versus MA0655.1 (JDP2); m=23/34; ncol2=9; w=9; offset=1; strand=D; shift=6; score=0.732281; ------ATGASTCAT---- ; cor=; Ncor= a 0 0 0 0 0 0 1634.0 5.0 0.0 1634.0 14.0 6.0 22.0 1634.0 22.0 0 0 0 0 c 0 0 0 0 0 0 19.0 6.0 3.0 1.0 1200.0 0.0 1634.0 0.0 404.0 0 0 0 0 g 0 0 0 0 0 0 140.0 1.0 1634.0 2.0 434.0 6.0 3.0 0.0 5.0 0 0 0 0 t 0 0 0 0 0 0 8.0 1634.0 22.0 25.0 13.0 1634.0 9.0 7.0 1634.0 0 0 0 0

MA0496.3_shift4 (MAFK)
; dyads_m20 versus MA0496.3 (MAFK); m=24/34; ncol2=15; w=11; offset=-1; strand=D; shift=4; score=0.659886; ----tgmTGACTCAGCmww ; cor=; Ncor= a 0 0 0 0 11946.0 9602.0 14089.0 1616.0 1108.0 47484.0 2492.0 2722.0 1818.0 47675.0 1439.0 2664.0 24802.0 15933.0 14818.0 c 0 0 0 0 10789.0 10655.0 27000.0 1568.0 1366.0 1670.0 39125.0 1133.0 47872.0 882.0 1921.0 43458.0 14138.0 10737.0 9756.0 g 0 0 0 0 9969.0 21904.0 6706.0 1058.0 46695.0 1306.0 7573.0 1081.0 957.0 1267.0 44013.0 3327.0 4590.0 10512.0 8541.0 t 0 0 0 0 19030.0 9573.0 3939.0 47492.0 2565.0 1274.0 2544.0 46798.0 1087.0 1910.0 4361.0 2285.0 8204.0 14552.0 18619.0

MA0591.1_shift3 (Bach1::Mafk)
; dyads_m20 versus MA0591.1 (Bach1::Mafk); m=25/34; ncol2=15; w=11; offset=-2; strand=D; shift=3; score=0.637388; ---rssrTGACTCAGCAs- ; cor=; Ncor= a 0 0 0 45.0 14.0 15.0 66.0 2.0 0.0 113.0 0.0 1.0 5.0 108.0 0.0 0.0 98.0 12.0 0 c 0 0 0 14.0 36.0 41.0 16.0 1.0 0.0 0.0 94.0 0.0 107.0 1.0 1.0 114.0 4.0 42.0 0 g 0 0 0 41.0 46.0 54.0 32.0 0.0 107.0 0.0 20.0 4.0 2.0 3.0 113.0 0.0 6.0 38.0 0 t 0 0 0 14.0 18.0 4.0 0.0 111.0 7.0 1.0 0.0 109.0 0.0 2.0 0.0 0.0 6.0 22.0 0

MA0489.1_shift1 (JUN(var.2))
; dyads_m20 versus MA0489.1 (JUN(var.2)); m=26/34; ncol2=14; w=10; offset=-4; strand=D; shift=1; score=0.627441; -rrrrrrTGAsTCAt---- ; cor=; Ncor= a 0 4852.0 3927.0 3726.0 4396.0 4146.0 5930.0 0.0 0.0 10953.0 382.0 199.0 956.0 10956.0 376.0 0 0 0 0 c 0 1250.0 1324.0 1127.0 1122.0 593.0 993.0 0.0 0.0 0.0 5704.0 0.0 10000.0 0.0 2509.0 0 0 0 0 g 0 2818.0 4110.0 4330.0 3461.0 4213.0 4033.0 0.0 10956.0 0.0 4090.0 0.0 0.0 0.0 2645.0 0 0 0 0 t 0 2036.0 1595.0 1773.0 1977.0 2004.0 0.0 10956.0 0.0 3.0 780.0 10757.0 0.0 0.0 5426.0 0 0 0 0

MA0150.2_shift2 (Nfe2l2)
; dyads_m20 versus MA0150.2 (Nfe2l2); m=27/34; ncol2=15; w=11; offset=-3; strand=D; shift=2; score=0.616161; --casmrTGACTCAGCA-- ; cor=; Ncor= a 0 0 166.0 401.0 118.0 203.0 488.0 0.0 0.0 726.0 20.0 84.0 65.0 577.0 10.0 4.0 623.0 0 0 c 0 0 338.0 78.0 239.0 247.0 28.0 0.0 0.0 0.0 533.0 20.0 549.0 3.0 11.0 699.0 26.0 0 0 g 0 0 109.0 159.0 275.0 152.0 205.0 0.0 711.0 0.0 118.0 16.0 46.0 90.0 698.0 19.0 31.0 0 0 t 0 0 113.0 88.0 94.0 124.0 5.0 726.0 15.0 0.0 55.0 606.0 66.0 56.0 7.0 4.0 46.0 0 0

MA0089.2_shift3 (NFE2L1)
; dyads_m20 versus MA0089.2 (NFE2L1); m=28/34; ncol2=16; w=11; offset=-2; strand=D; shift=3; score=0.596457; ---avmATGACTCAGCAaw ; cor=; Ncor= a 0 0 0 1244.0 878.0 992.0 2582.0 12.0 17.0 3336.0 51.0 218.0 185.0 3171.0 57.0 16.0 2857.0 1362.0 1145.0 c 0 0 0 703.0 946.0 853.0 57.0 5.0 7.0 4.0 2864.0 12.0 3049.0 9.0 18.0 3281.0 64.0 517.0 224.0 g 0 0 0 671.0 1050.0 742.0 706.0 2.0 3308.0 10.0 358.0 35.0 25.0 78.0 3018.0 33.0 142.0 694.0 305.0 t 0 0 0 738.0 482.0 769.0 11.0 3337.0 24.0 6.0 83.0 3091.0 97.0 98.0 263.0 26.0 293.0 783.0 1682.0

MA0501.1_shift6 (MAF::NFE2)
; dyads_m20 versus MA0501.1 (MAF::NFE2); m=29/34; ncol2=15; w=10; offset=1; strand=D; shift=6; score=0.540502; ------rTGACTCAGCArw ; cor=; Ncor= a 0 0 0 0 0 0 726.0 0.0 0.0 1090.0 16.0 110.0 80.0 978.0 8.0 0.0 931.0 383.0 361.0 c 0 0 0 0 0 0 26.0 0.0 0.0 0.0 871.0 1.0 937.0 0.0 4.0 1063.0 17.0 203.0 100.0 g 0 0 0 0 0 0 334.0 0.0 1082.0 0.0 166.0 12.0 22.0 51.0 1041.0 22.0 73.0 283.0 130.0 t 0 0 0 0 0 0 4.0 1090.0 8.0 0.0 37.0 967.0 51.0 61.0 37.0 5.0 69.0 221.0 499.0

MA1521.1_rc_shift3 (MAFA_rc)
; dyads_m20 versus MA1521.1_rc (MAFA_rc); m=30/34; ncol2=15; w=11; offset=-2; strand=R; shift=3; score=0.520163; ---dtGCTGAsTCAGCAh- ; cor=; Ncor= a 0 0 0 2340.0 802.0 258.0 973.0 1123.0 715.0 7524.0 657.0 1231.0 1291.0 8138.0 540.0 119.0 6277.0 2475.0 0 c 0 0 0 1532.0 1956.0 221.0 7957.0 889.0 422.0 1781.0 4024.0 317.0 8028.0 451.0 185.0 8343.0 316.0 2152.0 0 g 0 0 0 2126.0 223.0 8371.0 104.0 453.0 7985.0 240.0 3985.0 1615.0 475.0 986.0 7939.0 206.0 1857.0 1563.0 0 t 0 0 0 2465.0 6132.0 26.0 473.0 8128.0 1204.0 1281.0 602.0 7498.0 668.0 973.0 970.0 304.0 673.0 2273.0 0

MA1520.1_rc_shift3 (MAF_rc)
; dyads_m20 versus MA1520.1_rc (MAF_rc); m=31/34; ncol2=15; w=11; offset=-2; strand=R; shift=3; score=0.51838; ---wTGCTGAsTCAGCAw- ; cor=; Ncor= a 0 0 0 955.0 210.0 66.0 329.0 359.0 301.0 2715.0 344.0 432.0 682.0 2859.0 219.0 8.0 2397.0 922.0 0 c 0 0 0 486.0 562.0 56.0 2821.0 314.0 156.0 404.0 1431.0 116.0 2739.0 116.0 53.0 2938.0 51.0 587.0 0 g 0 0 0 575.0 72.0 2964.0 51.0 103.0 2776.0 89.0 1277.0 343.0 185.0 243.0 2837.0 45.0 516.0 516.0 0 t 0 0 0 977.0 2353.0 48.0 216.0 2904.0 609.0 529.0 387.0 2712.0 316.0 439.0 364.0 80.0 213.0 968.0 0

MA1101.2_shift1 (BACH2)
; dyads_m20 versus MA1101.2 (BACH2); m=32/34; ncol2=19; w=11; offset=-4; strand=D; shift=1; score=0.494469; -awasCATGAsTCATsvtw ; cor=; Ncor= a 0 26746.0 38327.0 59307.0 12404.0 9369.0 62993.0 1.0 6.0 67846.0 50.0 3.0 115.0 68264.0 47.0 4522.0 19650.0 18457.0 23586.0 c 0 12203.0 8823.0 5534.0 21218.0 61580.0 260.0 7.0 0.0 1088.0 37438.0 20.0 68215.0 2.0 11634.0 35220.0 17682.0 13438.0 10703.0 g 0 13720.0 9605.0 8490.0 21257.0 6727.0 15304.0 1.0 68240.0 13.0 30785.0 856.0 0.0 11.0 2028.0 30498.0 19155.0 7650.0 8221.0 t 0 15601.0 24469.0 15405.0 13391.0 8116.0 0.0 68266.0 54.0 6.0 18.0 67975.0 3.0 0.0 63746.0 5274.0 11783.0 54749.0 39012.0

MA0067.1_rc_shift4 (Pax2_rc)
; dyads_m20 versus MA0067.1_rc (Pax2_rc); m=33/34; ncol2=8; w=7; offset=-1; strand=R; shift=4; score=0.477656; ----vmrTGAcw------- ; cor=; Ncor= a 0 0 0 0 8.0 10.0 11.0 1.0 2.0 26.0 2.0 9.0 0 0 0 0 0 0 0 c 0 0 0 0 11.0 19.0 1.0 3.0 1.0 0.0 21.0 5.0 0 0 0 0 0 0 0 g 0 0 0 0 11.0 0.0 17.0 1.0 28.0 2.0 1.0 7.0 0 0 0 0 0 0 0 t 0 0 0 0 1.0 2.0 2.0 26.0 0.0 3.0 7.0 10.0 0 0 0 0 0 0 0

MA1114.1_rc_shift0 (PBX3_rc)
; dyads_m20 versus MA1114.1_rc (PBX3_rc); m=34/34; ncol2=17; w=11; offset=-5; strand=R; shift=0; score=0.453848; sygcCTGTCACTCAvmc-- ; cor=; Ncor= a 1508.0 1465.0 1525.0 683.0 549.0 376.0 138.0 145.0 83.0 6290.0 969.0 256.0 160.0 5697.0 1924.0 1853.0 1523.0 0 0 c 2217.0 2068.0 1591.0 4077.0 5691.0 425.0 209.0 604.0 6550.0 285.0 4929.0 214.0 6406.0 503.0 1928.0 1934.0 2192.0 0 0 g 1801.0 1619.0 2654.0 1377.0 412.0 129.0 6524.0 108.0 242.0 199.0 788.0 125.0 227.0 225.0 1849.0 1724.0 1711.0 0 0 t 1495.0 1869.0 1251.0 884.0 369.0 6091.0 150.0 6164.0 146.0 247.0 335.0 6426.0 228.0 596.0 1320.0 1510.0 1595.0 0 0

One-to-n matrix alignment; reference matrix: local_words_7nt_m13_shift3 ; 36 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m13_shift3 (local_words_7nt_m13local_words_7nt_m13)
; local_words_7nt_m13 (local_words_7nt_m13local_words_7nt_m13); m=0 (reference); ncol1=13; shift=3; ncol=18; ---cdgCACCTGCTsy-- ; Alignment reference a 0 0 0 75 110 64 0 431 4 0 0 0 1 4 78 59 0 0 c 0 0 0 162 103 69 434 0 397 431 5 3 409 58 154 177 0 0 g 0 0 0 100 111 275 2 5 29 4 2 433 2 6 122 68 0 0 t 0 0 0 99 112 28 0 0 6 1 429 0 24 368 82 132 0 0

MA1631.1_shift3 (ASCL1(var.2))
; local_words_7nt_m13 versus MA1631.1 (ASCL1(var.2)); m=1/35; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.949315; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0830.2_shift3 (TCF4)
; local_words_7nt_m13 versus MA0830.2 (TCF4); m=2/35; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.935373; ---cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA0745.2_shift3 (SNAI2)
; local_words_7nt_m13 versus MA0745.2 (SNAI2); m=3/35; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.820273; ---aygCACCTGTmry-- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0

MA0499.2_shift3 (MYOD1)
; local_words_7nt_m13 versus MA0499.2 (MYOD1); m=4/35; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.805592; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA1648.1_shift4 (TCF12(var.2))
; local_words_7nt_m13 versus MA1648.1 (TCF12(var.2)); m=5/35; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.796346; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift4 (TCF3)
; local_words_7nt_m13 versus MA0522.3 (TCF3); m=6/35; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.791815; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0103.3_shift4 (ZEB1)
; local_words_7nt_m13 versus MA0103.3 (ZEB1); m=7/35; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.75045; ----ssCACCTGsss--- ; cor=; Ncor= a 0 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 c 0 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 g 0 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 t 0 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0

MA1621.1_shift2 (Rbpjl)
; local_words_7nt_m13 versus MA1621.1 (Rbpjl); m=8/35; ncol2=14; w=13; offset=-1; strand=D; shift=2; score=0.750183; --svmaCACCTGtsyc-- ; cor=; Ncor= a 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 c 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 g 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 t 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0

MA1620.1_shift3 (Ptf1a(var.3))
; local_words_7nt_m13 versus MA1620.1 (Ptf1a(var.3)); m=9/35; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.738055; ---rmaCACCTGtky--- ; cor=; Ncor= a 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 c 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 g 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 t 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0

MA0500.2_shift3 (MYOG)
; local_words_7nt_m13 versus MA0500.2 (MYOG); m=10/35; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.71257; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA1558.1_rc_shift4 (SNAI1_rc)
; local_words_7nt_m13 versus MA1558.1_rc (SNAI1_rc); m=11/35; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.709703; ----yrCACCTGyh---- ; cor=; Ncor= a 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0

MA1559.1_rc_shift4 (SNAI3_rc)
; local_words_7nt_m13 versus MA1559.1_rc (SNAI3_rc); m=12/35; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.693008; ----trCACCTGyt---- ; cor=; Ncor= a 0 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 c 0 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 g 0 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 t 0 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_7nt_m13 versus MA0521.1_rc (Tcf12_rc); m=13/35; ncol2=11; w=11; offset=0; strand=R; shift=3; score=0.662748; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; local_words_7nt_m13 versus MA1100.2_rc (ASCL1_rc); m=14/35; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.644589; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; local_words_7nt_m13 versus MA0820.1 (FIGLA); m=15/35; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.633118; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

MA0816.1_shift4 (Ascl2)
; local_words_7nt_m13 versus MA0816.1 (Ascl2); m=16/35; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.627349; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; local_words_7nt_m13 versus MA0048.2 (NHLH1); m=17/35; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.61944; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA0744.2_rc_shift3 (SCRT2_rc)
; local_words_7nt_m13 versus MA0744.2_rc (SCRT2_rc); m=18/35; ncol2=16; w=13; offset=0; strand=R; shift=3; score=0.592762; ---waccACCTGTTGmwy ; cor=; Ncor= a 0 0 0 21453.0 18751.0 15588.0 11335.0 58889.0 2140.0 1471.0 1184.0 204.0 953.0 4384.0 3732.0 17252.0 16873.0 12071.0 c 0 0 0 12430.0 14716.0 25288.0 38133.0 1168.0 60636.0 56105.0 252.0 319.0 1878.0 2265.0 1339.0 35769.0 12473.0 17497.0 g 0 0 0 13846.0 16085.0 11351.0 5661.0 3475.0 972.0 728.0 294.0 64856.0 413.0 5536.0 59161.0 7236.0 6319.0 12732.0 t 0 0 0 17881.0 16058.0 13383.0 10481.0 2078.0 1862.0 7306.0 63880.0 231.0 62366.0 53425.0 1378.0 5353.0 29945.0 23310.0

MA0743.2_rc_shift3 (SCRT1_rc)
; local_words_7nt_m13 versus MA0743.2_rc (SCRT1_rc); m=19/35; ncol2=16; w=13; offset=0; strand=R; shift=3; score=0.587045; ---wacCACCTGTTGmwt ; cor=; Ncor= a 0 0 0 19839.0 18454.0 13726.0 7910.0 57969.0 1579.0 1305.0 1058.0 215.0 1002.0 4017.0 2621.0 31975.0 24326.0 12449.0 c 0 0 0 11049.0 13470.0 26973.0 41190.0 259.0 56500.0 51330.0 159.0 224.0 1566.0 1835.0 1297.0 16396.0 10154.0 14514.0 g 0 0 0 12837.0 14903.0 8788.0 3296.0 1098.0 466.0 557.0 234.0 59557.0 370.0 8751.0 54835.0 7425.0 8693.0 10314.0 t 0 0 0 16484.0 13382.0 10722.0 7813.0 883.0 1664.0 7017.0 58758.0 213.0 57271.0 45606.0 1456.0 4413.0 17036.0 22932.0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; local_words_7nt_m13 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=20/35; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.57149; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1628.1_rc_shift6 (Zic1::Zic2_rc)
; local_words_7nt_m13 versus MA1628.1_rc (Zic1::Zic2_rc); m=21/35; ncol2=11; w=10; offset=3; strand=R; shift=6; score=0.568173; ------ysCCTGCTGbg- ; cor=; Ncor= a 0 0 0 0 0 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 0 c 0 0 0 0 0 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 0 g 0 0 0 0 0 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 0 t 0 0 0 0 0 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0 0

MA1635.1_shift4 (BHLHE22(var.2))
; local_words_7nt_m13 versus MA1635.1 (BHLHE22(var.2)); m=22/35; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.563791; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1560.1_shift4 (SOHLH2)
; local_words_7nt_m13 versus MA1560.1 (SOHLH2); m=23/35; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.563289; ----ygCACGTGcr---- ; cor=; Ncor= a 0 0 0 0 230.0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 381.0 0 0 0 0 c 0 0 0 0 485.0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 239.0 0 0 0 0 g 0 0 0 0 184.0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 369.0 0 0 0 0 t 0 0 0 0 313.0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0 224.0 0 0 0 0

MA0825.1_rc_shift4 (MNT_rc)
; local_words_7nt_m13 versus MA0825.1_rc (MNT_rc); m=24/35; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.552461; ----rgCACGTGbt---- ; cor=; Ncor= a 0 0 0 0 219.0 120.0 25.0 681.0 0.0 16.0 21.0 5.0 63.0 129.0 0 0 0 0 c 0 0 0 0 75.0 131.0 681.0 15.0 681.0 7.0 0.0 0.0 203.0 145.0 0 0 0 0 g 0 0 0 0 229.0 281.0 0.0 0.0 0.0 681.0 0.0 681.0 228.0 128.0 0 0 0 0 t 0 0 0 0 159.0 150.0 0.0 0.0 15.0 0.0 681.0 27.0 187.0 279.0 0 0 0 0

MA0058.3_shift4 (MAX)
; local_words_7nt_m13 versus MA0058.3 (MAX); m=25/35; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.545161; ----amCACGTGcy---- ; cor=; Ncor= a 0 0 0 0 3307.0 1915.0 39.0 6876.0 0.0 329.0 69.0 0.0 1341.0 1122.0 0 0 0 0 c 0 0 0 0 1556.0 2809.0 6876.0 0.0 6876.0 39.0 159.0 27.0 2450.0 2225.0 0 0 0 0 g 0 0 0 0 1295.0 1514.0 0.0 87.0 7.0 6876.0 20.0 6876.0 1638.0 986.0 0 0 0 0 t 0 0 0 0 719.0 637.0 0.0 38.0 229.0 19.0 6876.0 36.0 1446.0 2543.0 0 0 0 0

MA1629.1_rc_shift5 (Zic2_rc)
; local_words_7nt_m13 versus MA1629.1_rc (Zic2_rc); m=26/35; ncol2=14; w=11; offset=2; strand=R; shift=5; score=0.523336; -----cyyCCTGCTGtGm ; cor=; Ncor= a 0 0 0 0 0 2104.0 1641.0 2472.0 154.0 410.0 441.0 298.0 67.0 268.0 120.0 2437.0 240.0 3893.0 c 0 0 0 0 0 5314.0 4979.0 4911.0 11465.0 11184.0 735.0 269.0 11484.0 186.0 188.0 829.0 585.0 3821.0 g 0 0 0 0 0 2168.0 1661.0 1476.0 204.0 133.0 118.0 11272.0 228.0 391.0 11476.0 1765.0 9933.0 1755.0 t 0 0 0 0 0 2333.0 3638.0 3060.0 96.0 192.0 10625.0 80.0 140.0 11074.0 135.0 6888.0 1161.0 2450.0

MA1529.1_rc_shift0 (NHLH2_rc)
; local_words_7nt_m13 versus MA1529.1_rc (NHLH2_rc); m=27/35; ncol2=18; w=13; offset=-3; strand=R; shift=0; score=0.512736; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA0807.1_rc_shift3 (TBX5_rc)
; local_words_7nt_m13 versus MA0807.1_rc (TBX5_rc); m=28/35; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.498252; ---TmACACCT------- ; cor=; Ncor= a 0 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 0 c 0 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 0 g 0 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 0 t 0 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0 0

MA0806.1_rc_shift3 (TBX4_rc)
; local_words_7nt_m13 versus MA0806.1_rc (TBX4_rc); m=29/35; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.490655; ---TcACACCT------- ; cor=; Ncor= a 0 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 0 0 0 c 0 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 0 0 0 g 0 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 0 0 0 t 0 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0 0 0 0

MA0803.1_rc_shift3 (TBX15_rc)
; local_words_7nt_m13 versus MA0803.1_rc (TBX15_rc); m=30/35; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.46488; ---TCACACCT------- ; cor=; Ncor= a 0 0 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 0 0 0 0 0 0 c 0 0 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 0 0 0 0 0 0 g 0 0 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 0 0 0 0 0 0 t 0 0 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0 0 0 0 0 0 0

MA1567.1_rc_shift2 (TBX6_rc)
; local_words_7nt_m13 versus MA1567.1_rc (TBX6_rc); m=31/35; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.453486; --tTmACACcty------ ; cor=; Ncor= a 0 0 2330.0 713.0 5964.0 11087.0 12.0 11087.0 0.0 1058.0 2157.0 2456.0 0 0 0 0 0 0 c 0 0 2141.0 2251.0 11087.0 320.0 11087.0 0.0 11087.0 11087.0 3347.0 4003.0 0 0 0 0 0 0 g 0 0 2066.0 652.0 4876.0 3053.0 0.0 1002.0 63.0 2913.0 1173.0 1630.0 0 0 0 0 0 0 t 0 0 4550.0 11087.0 1430.0 552.0 14.0 44.0 58.0 1882.0 11087.0 2998.0 0 0 0 0 0 0

MA0805.1_rc_shift3 (TBX1_rc)
; local_words_7nt_m13 versus MA0805.1_rc (TBX1_rc); m=32/35; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.450876; ---TCACACCT------- ; cor=; Ncor= a 0 0 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 0 0 0 0 c 0 0 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 0 0 0 0 g 0 0 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 0 0 0 0 t 0 0 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0 0 0 0 0

MA0801.1_rc_shift3 (MGA_rc)
; local_words_7nt_m13 versus MA0801.1_rc (MGA_rc); m=33/35; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.444435; ---TCACACCT------- ; cor=; Ncor= a 0 0 0 274.0 6465.0 30489.0 11.0 30489.0 104.0 1929.0 4160.0 0 0 0 0 0 0 0 c 0 0 0 920.0 30489.0 381.0 30489.0 96.0 30489.0 30489.0 8873.0 0 0 0 0 0 0 0 g 0 0 0 110.0 1753.0 3089.0 1.0 3534.0 509.0 3737.0 1151.0 0 0 0 0 0 0 0 t 0 0 0 30489.0 689.0 1042.0 14.0 12.0 16.0 4310.0 30489.0 0 0 0 0 0 0 0

MA0622.1_rc_shift5 (Mlxip_rc)
; local_words_7nt_m13 versus MA0622.1_rc (Mlxip_rc); m=34/35; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.435918; -----mCACGTGv----- ; cor=; Ncor= a 0 0 0 0 0 499.0 0.0 999.0 0.0 0.0 0.0 0.0 263.0 0 0 0 0 0 c 0 0 0 0 0 250.0 999.0 0.0 999.0 0.0 0.0 0.0 421.0 0 0 0 0 0 g 0 0 0 0 0 63.0 0.0 0.0 0.0 999.0 0.0 999.0 263.0 0 0 0 0 0 t 0 0 0 0 0 188.0 0.0 0.0 0.0 0.0 999.0 0.0 53.0 0 0 0 0 0

MA0802.1_rc_shift1 (TBR1_rc)
; local_words_7nt_m13 versus MA0802.1_rc (TBR1_rc); m=35/35; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.401138; -tTTCACACCT------- ; cor=; Ncor= a 0 5846.0 4576.0 205.0 7001.0 34509.0 4.0 34509.0 213.0 4480.0 1433.0 0 0 0 0 0 0 0 c 0 4537.0 1488.0 584.0 34509.0 157.0 34509.0 88.0 34509.0 34509.0 3329.0 0 0 0 0 0 0 0 g 0 5619.0 2575.0 90.0 2551.0 4742.0 6.0 1759.0 254.0 3255.0 359.0 0 0 0 0 0 0 0 t 0 18507.0 25869.0 34509.0 1175.0 2386.0 0.0 39.0 70.0 6880.0 34509.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_7nt_m16_shift3 ; 36 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m16_shift3 (local_words_7nt_m16local_words_7nt_m16)
; local_words_7nt_m16 (local_words_7nt_m16local_words_7nt_m16); m=0 (reference); ncol1=13; shift=3; ncol=18; ---rsAGCAGGTGchg-- ; Alignment reference a 0 0 0 132 81 374 23 0 435 1 6 0 0 30 112 100 0 0 c 0 0 0 69 129 6 2 439 2 4 29 5 2 276 112 101 0 0 g 0 0 0 182 154 58 416 3 5 437 402 1 440 69 105 166 0 0 t 0 0 0 59 78 4 1 0 0 0 5 436 0 67 113 75 0 0

MA1631.1_rc_shift3 (ASCL1(var.2)_rc)
; local_words_7nt_m16 versus MA1631.1_rc (ASCL1(var.2)_rc); m=1/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.948896; ---gsrGCAGGTGchg-- ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0

MA0830.2_rc_shift3 (TCF4_rc)
; local_words_7nt_m16 versus MA0830.2_rc (TCF4_rc); m=2/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.934645; ---ssggCAGGTGccg-- ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0

MA0745.2_rc_shift3 (SNAI2_rc)
; local_words_7nt_m16 versus MA0745.2_rc (SNAI2_rc); m=3/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.818658; ---rykACAGGTGcrt-- ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0

MA0499.2_rc_shift3 (MYOD1_rc)
; local_words_7nt_m16 versus MA0499.2_rc (MYOD1_rc); m=4/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.803792; ---rkrACAGGTGcwg-- ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0

MA1648.1_rc_shift4 (TCF12(var.2)_rc)
; local_words_7nt_m16 versus MA1648.1_rc (TCF12(var.2)_rc); m=5/35; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.796656; ----srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0

MA0522.3_rc_shift4 (TCF3_rc)
; local_words_7nt_m16 versus MA0522.3_rc (TCF3_rc); m=6/35; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.791994; ----ssGCAGGTGbs--- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0

MA0103.3_rc_shift4 (ZEB1_rc)
; local_words_7nt_m16 versus MA0103.3_rc (ZEB1_rc); m=7/35; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.750327; ----sssCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0 0 0

MA1621.1_rc_shift3 (Rbpjl_rc)
; local_words_7nt_m16 versus MA1621.1_rc (Rbpjl_rc); m=8/35; ncol2=14; w=13; offset=0; strand=R; shift=3; score=0.749849; ---grsaCAGGTGtkbs- ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; local_words_7nt_m16 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=9/35; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.737774; ----rmaCAGGTGtky-- ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0

MA0500.2_rc_shift4 (MYOG_rc)
; local_words_7nt_m16 versus MA0500.2_rc (MYOG_rc); m=10/35; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.712281; ----sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA1558.1_shift5 (SNAI1)
; local_words_7nt_m16 versus MA1558.1 (SNAI1); m=11/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.709389; -----drCAGGTGyr--- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0

MA1559.1_shift5 (SNAI3)
; local_words_7nt_m16 versus MA1559.1 (SNAI3); m=12/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.692212; -----arCAGGTGya--- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0

MA0521.1_shift5 (Tcf12)
; local_words_7nt_m16 versus MA0521.1 (Tcf12); m=13/35; ncol2=11; w=11; offset=2; strand=D; shift=5; score=0.662065; -----rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA1100.2_shift5 (ASCL1)
; local_words_7nt_m16 versus MA1100.2 (ASCL1); m=14/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.644113; -----rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0820.1_rc_shift5 (FIGLA_rc)
; local_words_7nt_m16 versus MA0820.1_rc (FIGLA_rc); m=15/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.633104; -----wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0

MA0816.1_rc_shift5 (Ascl2_rc)
; local_words_7nt_m16 versus MA0816.1_rc (Ascl2_rc); m=16/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.627509; -----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA0048.2_rc_shift5 (NHLH1_rc)
; local_words_7nt_m16 versus MA0048.2_rc (NHLH1_rc); m=17/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.619245; -----mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA0744.2_shift0 (SCRT2)
; local_words_7nt_m16 versus MA0744.2 (SCRT2); m=18/35; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.594099; rrwkCAACAGGTggtw-- ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 0 0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 0 0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 0 0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0 0 0

MA0743.2_shift0 (SCRT1)
; local_words_7nt_m16 versus MA0743.2 (SCRT1); m=19/35; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.588023; wawkCAACAGGTGgtw-- ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 0 0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 0 0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 0 0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0 0 0

MA1472.1_shift5 (BHLHA15(var.2))
; local_words_7nt_m16 versus MA1472.1 (BHLHA15(var.2)); m=20/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.57142; -----avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA1628.1_shift2 (Zic1::Zic2)
; local_words_7nt_m16 versus MA1628.1 (Zic1::Zic2); m=21/35; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.570163; --cvCAGCAGGsr----- ; cor=; Ncor= a 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 0 0 0 0 c 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 0 0 0 0 g 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 0 0 0 0 t 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0 0 0 0 0

MA1635.1_rc_shift5 (BHLHE22(var.2)_rc)
; local_words_7nt_m16 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=22/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.56339; -----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA1560.1_rc_shift5 (SOHLH2_rc)
; local_words_7nt_m16 versus MA1560.1_rc (SOHLH2_rc); m=23/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.562778; -----ygCACGTGcr--- ; cor=; Ncor= a 0 0 0 0 0 224.0 153.0 4.0 1212.0 15.0 7.0 0.0 70.0 276.0 313.0 0 0 0 c 0 0 0 0 0 369.0 172.0 1212.0 0.0 1212.0 11.0 41.0 29.0 1212.0 184.0 0 0 0 g 0 0 0 0 0 239.0 1212.0 4.0 65.0 0.0 1212.0 0.0 1212.0 264.0 485.0 0 0 0 t 0 0 0 0 0 381.0 272.0 41.0 36.0 14.0 0.0 1212.0 45.0 172.0 230.0 0 0 0

MA0825.1_shift5 (MNT)
; local_words_7nt_m16 versus MA0825.1 (MNT); m=24/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.552045; -----avCACGTGcy--- ; cor=; Ncor= a 0 0 0 0 0 279.0 187.0 27.0 681.0 0.0 15.0 0.0 0.0 150.0 159.0 0 0 0 c 0 0 0 0 0 128.0 228.0 681.0 0.0 681.0 0.0 0.0 0.0 281.0 229.0 0 0 0 g 0 0 0 0 0 145.0 203.0 0.0 0.0 7.0 681.0 15.0 681.0 131.0 75.0 0 0 0 t 0 0 0 0 0 129.0 63.0 5.0 21.0 16.0 0.0 681.0 25.0 120.0 219.0 0 0 0

MA0058.3_rc_shift5 (MAX_rc)
; local_words_7nt_m16 versus MA0058.3_rc (MAX_rc); m=25/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.545085; -----rgCACGTGkt--- ; cor=; Ncor= a 0 0 0 0 0 2543.0 1446.0 36.0 6876.0 19.0 229.0 38.0 0.0 637.0 719.0 0 0 0 c 0 0 0 0 0 986.0 1638.0 6876.0 20.0 6876.0 7.0 87.0 0.0 1514.0 1295.0 0 0 0 g 0 0 0 0 0 2225.0 2450.0 27.0 159.0 39.0 6876.0 0.0 6876.0 2809.0 1556.0 0 0 0 t 0 0 0 0 0 1122.0 1341.0 0.0 69.0 329.0 0.0 6876.0 39.0 1915.0 3307.0 0 0 0

MA1629.1_shift0 (Zic2)
; local_words_7nt_m16 versus MA1629.1 (Zic2); m=26/35; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.525132; mkCaCAGCAGGrrg---- ; cor=; Ncor= a 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0 0 0 0 0 c 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0 0 0 0 0 g 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0 0 0 0 0 t 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0 0 0 0 0

MA1529.1_shift1 (NHLH2)
; local_words_7nt_m16 versus MA1529.1 (NHLH2); m=27/35; ncol2=18; w=13; offset=-2; strand=D; shift=1; score=0.512495; -ggGyMGCAGCTGCGyCm ; cor=; Ncor= a 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 c 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 g 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 t 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0

MA0807.1_shift8 (TBX5)
; local_words_7nt_m16 versus MA0807.1 (TBX5); m=28/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.499258; --------AGGTGTkA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 0 0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 0 0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 0 0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0 0 0

MA0806.1_shift8 (TBX4)
; local_words_7nt_m16 versus MA0806.1 (TBX4); m=29/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.491578; --------AGGTGTgA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 0 0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 0 0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 0 0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0 0 0

MA0803.1_shift8 (TBX15)
; local_words_7nt_m16 versus MA0803.1 (TBX15); m=30/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.465853; --------AGGTGTGA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10502.0 458.0 19.0 61.0 0.0 140.0 44.0 10502.0 0 0 c 0 0 0 0 0 0 0 0 74.0 101.0 7.0 175.0 8.0 435.0 454.0 71.0 0 0 g 0 0 0 0 0 0 0 0 664.0 10502.0 10502.0 245.0 10502.0 324.0 10502.0 306.0 0 0 t 0 0 0 0 0 0 0 0 112.0 103.0 0.0 10502.0 0.0 10502.0 937.0 96.0 0 0

MA1567.1_shift7 (TBX6)
; local_words_7nt_m16 versus MA1567.1 (TBX6); m=31/35; ncol2=10; w=9; offset=4; strand=D; shift=7; score=0.454093; -------ragGTGTkAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 2998.0 11087.0 1882.0 58.0 44.0 14.0 552.0 1430.0 11087.0 4550.0 0 c 0 0 0 0 0 0 0 1630.0 1173.0 2913.0 63.0 1002.0 0.0 3053.0 4876.0 652.0 2066.0 0 g 0 0 0 0 0 0 0 4003.0 3347.0 11087.0 11087.0 0.0 11087.0 320.0 11087.0 2251.0 2141.0 0 t 0 0 0 0 0 0 0 2456.0 2157.0 1058.0 0.0 11087.0 12.0 11087.0 5964.0 713.0 2330.0 0

MA0805.1_shift8 (TBX1)
; local_words_7nt_m16 versus MA0805.1 (TBX1); m=32/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score= 0.4518; --------AGGTGTGA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 11931.0 1560.0 0.0 28.0 0.0 142.0 141.0 11931.0 0 0 c 0 0 0 0 0 0 0 0 113.0 711.0 0.0 214.0 5.0 613.0 720.0 33.0 0 0 g 0 0 0 0 0 0 0 0 1007.0 11931.0 11931.0 141.0 11931.0 109.0 11931.0 18.0 0 0 t 0 0 0 0 0 0 0 0 564.0 669.0 0.0 11931.0 0.0 11931.0 1039.0 0.0 0 0

MA0801.1_shift8 (MGA)
; local_words_7nt_m16 versus MA0801.1 (MGA); m=33/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.445354; --------AGGTGTGA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 30489.0 4310.0 16.0 12.0 14.0 1042.0 689.0 30489.0 0 0 c 0 0 0 0 0 0 0 0 1151.0 3737.0 509.0 3534.0 1.0 3089.0 1753.0 110.0 0 0 g 0 0 0 0 0 0 0 0 8873.0 30489.0 30489.0 96.0 30489.0 381.0 30489.0 920.0 0 0 t 0 0 0 0 0 0 0 0 4160.0 1929.0 104.0 30489.0 11.0 30489.0 6465.0 274.0 0 0

MA0622.1_shift6 (Mlxip)
; local_words_7nt_m16 versus MA0622.1 (Mlxip); m=34/35; ncol2=8; w=8; offset=3; strand=D; shift=6; score=0.436234; ------bCACGTGk---- ; cor=; Ncor= a 0 0 0 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 0 0 0 0 c 0 0 0 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 0 0 0 0 g 0 0 0 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 0 0 0 0 t 0 0 0 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0 0 0 0 0

MA0802.1_shift8 (TBR1)
; local_words_7nt_m16 versus MA0802.1 (TBR1); m=35/35; ncol2=10; w=8; offset=5; strand=D; shift=8; score=0.40189; --------AGGTGTGAAa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 34509.0 6880.0 70.0 39.0 0.0 2386.0 1175.0 34509.0 25869.0 18507.0 c 0 0 0 0 0 0 0 0 359.0 3255.0 254.0 1759.0 6.0 4742.0 2551.0 90.0 2575.0 5619.0 g 0 0 0 0 0 0 0 0 3329.0 34509.0 34509.0 88.0 34509.0 157.0 34509.0 584.0 1488.0 4537.0 t 0 0 0 0 0 0 0 0 1433.0 4480.0 213.0 34509.0 4.0 34509.0 7001.0 205.0 4576.0 5846.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m2_shift2 ; 58 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m2_shift2 (oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2)
; oligos_6nt_mkv3_m2 (oligos_6nt_mkv3_m2oligos_6nt_mkv3_m2); m=0 (reference); ncol1=12; shift=2; ncol=16; --sssCACCTGTym-- ; Alignment reference a 0 0 124 140 160 3 658 1 0 0 0 2 23 167 0 0 c 0 0 214 176 178 654 0 641 648 2 3 6 294 207 0 0 g 0 0 168 196 258 3 2 13 10 2 656 3 109 163 0 0 t 0 0 154 148 64 0 0 5 2 656 1 649 234 123 0 0

MA1620.1_shift2 (Ptf1a(var.3))
; oligos_6nt_mkv3_m2 versus MA1620.1 (Ptf1a(var.3)); m=1/57; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.941814; --rmaCACCTGtky-- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0

MA0499.2_shift2 (MYOD1)
; oligos_6nt_mkv3_m2 versus MA0499.2 (MYOD1); m=2/57; ncol2=13; w=12; offset=0; strand=D; shift=2; score=0.901623; --cwgCACCTGTymy- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0745.2_shift2 (SNAI2)
; oligos_6nt_mkv3_m2 versus MA0745.2 (SNAI2); m=3/57; ncol2=13; w=12; offset=0; strand=D; shift=2; score=0.900829; --aygCACCTGTmry- ; cor=; Ncor= a 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA1621.1_shift1 (Rbpjl)
; oligos_6nt_mkv3_m2 versus MA1621.1 (Rbpjl); m=4/57; ncol2=14; w=12; offset=-1; strand=D; shift=1; score=0.811199; -svmaCACCTGtsyc- ; cor=; Ncor= a 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0

MA0103.3_shift3 (ZEB1)
; oligos_6nt_mkv3_m2 versus MA0103.3 (ZEB1); m=5/57; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.810354; ---ssCACCTGsss-- ; cor=; Ncor= a 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 c 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 g 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 t 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0

MA0830.2_shift2 (TCF4)
; oligos_6nt_mkv3_m2 versus MA0830.2 (TCF4); m=6/57; ncol2=13; w=12; offset=0; strand=D; shift=2; score=0.798067; --cggCACCTGccss- ; cor=; Ncor= a 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 c 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 g 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 t 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0

MA1559.1_rc_shift3 (SNAI3_rc)
; oligos_6nt_mkv3_m2 versus MA1559.1_rc (SNAI3_rc); m=7/57; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.783655; ---trCACCTGyt--- ; cor=; Ncor= a 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 c 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 g 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 t 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; oligos_6nt_mkv3_m2 versus MA1619.1 (Ptf1a(var.2)); m=8/57; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.774526; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA1641.1_rc_shift2 (MYF5_rc)
; oligos_6nt_mkv3_m2 versus MA1641.1_rc (MYF5_rc); m=9/57; ncol2=12; w=12; offset=0; strand=R; shift=2; score=0.773379; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA1631.1_shift2 (ASCL1(var.2))
; oligos_6nt_mkv3_m2 versus MA1631.1 (ASCL1(var.2)); m=10/57; ncol2=13; w=12; offset=0; strand=D; shift=2; score=0.77263; --cdgCACCTGCysc- ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0

MA0521.1_rc_shift2 (Tcf12_rc)
; oligos_6nt_mkv3_m2 versus MA0521.1_rc (Tcf12_rc); m=11/57; ncol2=11; w=11; offset=0; strand=R; shift=2; score=0.771363; --cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA0783.1_rc_shift2 (PKNOX2_rc)
; oligos_6nt_mkv3_m2 versus MA0783.1_rc (PKNOX2_rc); m=12/57; ncol2=12; w=12; offset=0; strand=R; shift=2; score=0.760504; --TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 c 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 g 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 t 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0

MA0820.1_shift3 (FIGLA)
; oligos_6nt_mkv3_m2 versus MA0820.1 (FIGLA); m=13/57; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.758072; ---wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

MA1558.1_rc_shift3 (SNAI1_rc)
; oligos_6nt_mkv3_m2 versus MA1558.1_rc (SNAI1_rc); m=14/57; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.755557; ---yrCACCTGyh--- ; cor=; Ncor= a 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 c 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 g 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 t 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0

MA1648.1_shift3 (TCF12(var.2))
; oligos_6nt_mkv3_m2 versus MA1648.1 (TCF12(var.2)); m=15/57; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.741345; ---ssCACCTGCys-- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0

MA0522.3_shift3 (TCF3)
; oligos_6nt_mkv3_m2 versus MA0522.3 (TCF3); m=16/57; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.736115; ---svCACCTGCss-- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0

MA0500.2_shift2 (MYOG)
; oligos_6nt_mkv3_m2 versus MA0500.2 (MYOG); m=17/57; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.725643; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA0797.1_rc_shift2 (TGIF2_rc)
; oligos_6nt_mkv3_m2 versus MA0797.1_rc (TGIF2_rc); m=18/57; ncol2=12; w=12; offset=0; strand=R; shift=2; score=0.709765; --TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 c 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 g 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 t 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0

MA1618.1_rc_shift1 (Ptf1a_rc)
; oligos_6nt_mkv3_m2 versus MA1618.1_rc (Ptf1a_rc); m=19/57; ncol2=13; w=12; offset=-1; strand=R; shift=1; score=0.705878; -dmaaCATCTGtkh-- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0

MA1109.1_rc_shift1 (NEUROD1_rc)
; oligos_6nt_mkv3_m2 versus MA1109.1_rc (NEUROD1_rc); m=20/57; ncol2=13; w=12; offset=-1; strand=R; shift=1; score=0.694286; -syrCCATCTGtyc-- ; cor=; Ncor= a 0 525.0 451.0 580.0 168.0 31.0 2157.0 21.0 90.0 18.0 12.0 47.0 298.0 566.0 0 0 c 0 628.0 599.0 418.0 1962.0 2231.0 19.0 77.0 2152.0 16.0 13.0 494.0 906.0 726.0 0 0 g 0 591.0 540.0 911.0 93.0 7.0 51.0 150.0 24.0 7.0 2240.0 452.0 323.0 429.0 0 0 t 0 538.0 692.0 373.0 59.0 13.0 55.0 2034.0 16.0 2241.0 17.0 1289.0 755.0 561.0 0 0

MA1642.1_rc_shift2 (NEUROG2(var.2)_rc)
; oligos_6nt_mkv3_m2 versus MA1642.1_rc (NEUROG2(var.2)_rc); m=21/57; ncol2=13; w=12; offset=0; strand=R; shift=2; score=0.680663; --brCCATCTGtyyy- ; cor=; Ncor= a 0 0 7184.0 9704.0 4904.0 484.0 32515.0 275.0 2806.0 159.0 237.0 1750.0 4721.0 8378.0 7535.0 0 c 0 0 8709.0 7581.0 24998.0 33422.0 323.0 418.0 30392.0 301.0 317.0 8039.0 11114.0 10123.0 10813.0 0 g 0 0 9034.0 10441.0 2966.0 205.0 904.0 952.0 793.0 211.0 33559.0 8154.0 6467.0 6843.0 7353.0 0 t 0 0 9464.0 6665.0 1523.0 280.0 649.0 32746.0 400.0 33720.0 278.0 16448.0 12089.0 9047.0 8690.0 0

MA0743.2_rc_shift2 (SCRT1_rc)
; oligos_6nt_mkv3_m2 versus MA0743.2_rc (SCRT1_rc); m=22/57; ncol2=16; w=12; offset=0; strand=R; shift=2; score=0.659631; --wacCACCTGTTGmw ; cor=; Ncor= a 0 0 19839.0 18454.0 13726.0 7910.0 57969.0 1579.0 1305.0 1058.0 215.0 1002.0 4017.0 2621.0 31975.0 24326.0 c 0 0 11049.0 13470.0 26973.0 41190.0 259.0 56500.0 51330.0 159.0 224.0 1566.0 1835.0 1297.0 16396.0 10154.0 g 0 0 12837.0 14903.0 8788.0 3296.0 1098.0 466.0 557.0 234.0 59557.0 370.0 8751.0 54835.0 7425.0 8693.0 t 0 0 16484.0 13382.0 10722.0 7813.0 883.0 1664.0 7017.0 58758.0 213.0 57271.0 45606.0 1456.0 4413.0 17036.0

MA0744.2_rc_shift2 (SCRT2_rc)
; oligos_6nt_mkv3_m2 versus MA0744.2_rc (SCRT2_rc); m=23/57; ncol2=16; w=12; offset=0; strand=R; shift=2; score=0.649418; --waccACCTGTTGmw ; cor=; Ncor= a 0 0 21453.0 18751.0 15588.0 11335.0 58889.0 2140.0 1471.0 1184.0 204.0 953.0 4384.0 3732.0 17252.0 16873.0 c 0 0 12430.0 14716.0 25288.0 38133.0 1168.0 60636.0 56105.0 252.0 319.0 1878.0 2265.0 1339.0 35769.0 12473.0 g 0 0 13846.0 16085.0 11351.0 5661.0 3475.0 972.0 728.0 294.0 64856.0 413.0 5536.0 59161.0 7236.0 6319.0 t 0 0 17881.0 16058.0 13383.0 10481.0 2078.0 1862.0 7306.0 63880.0 231.0 62366.0 53425.0 1378.0 5353.0 29945.0

MA0626.1_shift3 (Npas2)
; oligos_6nt_mkv3_m2 versus MA0626.1 (Npas2); m=24/57; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.644139; ---dsCACGTGtm--- ; cor=; Ncor= a 0 0 0 273.0 154.0 0.0 999.0 81.0 81.0 0.0 81.0 74.0 297.0 0 0 0 c 0 0 0 177.0 377.0 999.0 0.0 918.0 0.0 0.0 0.0 172.0 299.0 0 0 0 g 0 0 0 293.0 420.0 0.0 0.0 0.0 918.0 0.0 918.0 188.0 202.0 0 0 0 t 0 0 0 257.0 48.0 0.0 0.0 0.0 0.0 999.0 0.0 566.0 202.0 0 0 0

MA1485.1_shift1 (FERD3L)
; oligos_6nt_mkv3_m2 versus MA1485.1 (FERD3L); m=25/57; ncol2=14; w=12; offset=-1; strand=D; shift=1; score=0.64253; -GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0819.1_rc_shift3 (CLOCK_rc)
; oligos_6nt_mkv3_m2 versus MA0819.1_rc (CLOCK_rc); m=26/57; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.641718; ---raCACGTGTt--- ; cor=; Ncor= a 0 0 0 174.0 429.0 9.0 429.0 0.0 28.0 0.0 2.0 13.0 75.0 0 0 0 c 0 0 0 39.0 110.0 429.0 5.0 429.0 0.0 15.0 2.0 89.0 93.0 0 0 0 g 0 0 0 128.0 152.0 3.0 5.0 0.0 429.0 5.0 429.0 85.0 35.0 0 0 0 t 0 0 0 89.0 1.0 0.0 3.0 40.0 16.0 429.0 11.0 429.0 226.0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; oligos_6nt_mkv3_m2 versus MA1100.2_rc (ASCL1_rc); m=27/57; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.640878; ---rgCAGCTGyy--- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0

MA1105.2_rc_shift3 (GRHL2_rc)
; oligos_6nt_mkv3_m2 versus MA1105.2_rc (GRHL2_rc); m=28/57; ncol2=12; w=11; offset=1; strand=R; shift=3; score=0.639538; ---maAACCTGTTyt- ; cor=; Ncor= a 0 0 0 13946.0 17515.0 36906.0 36921.0 625.0 1247.0 5826.0 320.0 1260.0 1618.0 6264.0 8493.0 0 c 0 0 0 10536.0 7961.0 1220.0 748.0 39624.0 37226.0 485.0 609.0 2841.0 2646.0 10776.0 9161.0 0 g 0 0 0 8528.0 9341.0 2000.0 2331.0 987.0 581.0 1543.0 40446.0 712.0 1147.0 6996.0 9741.0 0 t 0 0 0 8868.0 7061.0 1752.0 1878.0 642.0 2824.0 34024.0 503.0 37065.0 36467.0 17842.0 14483.0 0

MA1472.1_shift3 (BHLHA15(var.2))
; oligos_6nt_mkv3_m2 versus MA1472.1 (BHLHA15(var.2)); m=29/57; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.637389; ---avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA1493.1_shift3 (HES6)
; oligos_6nt_mkv3_m2 versus MA1493.1 (HES6); m=30/57; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.632105; ---GGCACGTGTy--- ; cor=; Ncor= a 0 0 0 12.0 16.0 17.0 439.0 2.0 10.0 0.0 0.0 33.0 79.0 0 0 0 c 0 0 0 39.0 35.0 439.0 0.0 439.0 12.0 7.0 0.0 21.0 152.0 0 0 0 g 0 0 0 439.0 439.0 19.0 9.0 9.0 439.0 29.0 439.0 0.0 0.0 0 0 0 t 0 0 0 43.0 13.0 15.0 11.0 16.0 0.0 439.0 0.0 439.0 209.0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; oligos_6nt_mkv3_m2 versus MA1467.1_rc (ATOH1(var.2)_rc); m=31/57; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.629869; ---RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0

MA0665.1_shift3 (MSC)
; oligos_6nt_mkv3_m2 versus MA0665.1 (MSC); m=32/57; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.629729; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0

MA0667.1_shift3 (MYF6)
; oligos_6nt_mkv3_m2 versus MA0667.1 (MYF6); m=33/57; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.628471; ---AACArCTGTY--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA0832.1_rc_shift1 (Tcf21_rc)
; oligos_6nt_mkv3_m2 versus MA0832.1_rc (Tcf21_rc); m=34/57; ncol2=14; w=12; offset=-1; strand=R; shift=1; score=0.610593; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA1108.2_shift3 (MXI1)
; oligos_6nt_mkv3_m2 versus MA1108.2 (MXI1); m=35/57; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.608337; ---rvCACATGkc--- ; cor=; Ncor= a 0 0 0 5786.0 6184.0 109.0 21870.0 10.0 20506.0 0.0 527.0 2833.0 4945.0 0 0 0 c 0 0 0 4724.0 5841.0 21382.0 1.0 21552.0 0.0 507.0 114.0 5329.0 6343.0 0 0 0 g 0 0 0 6326.0 6078.0 97.0 170.0 18.0 1542.0 0.0 21232.0 7228.0 5394.0 0 0 0 t 0 0 0 5212.0 3945.0 460.0 7.0 468.0 0.0 21541.0 175.0 6658.0 5366.0 0 0 0

MA0823.1_rc_shift3 (HEY1_rc)
; oligos_6nt_mkv3_m2 versus MA0823.1_rc (HEY1_rc); m=36/57; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.603747; ---grCACGTGyc--- ; cor=; Ncor= a 0 0 0 318.0 863.0 22.0 3338.0 0.0 0.0 21.0 15.0 110.0 352.0 0 0 0 c 0 0 0 373.0 380.0 3338.0 10.0 3338.0 0.0 123.0 3.0 1199.0 1788.0 0 0 0 g 0 0 0 2172.0 1762.0 19.0 474.0 18.0 3338.0 30.0 3338.0 656.0 761.0 0 0 0 t 0 0 0 475.0 333.0 32.0 0.0 0.0 0.0 3338.0 1.0 1373.0 437.0 0 0 0

MA0100.3_shift3 (MYB)
; oligos_6nt_mkv3_m2 versus MA0100.3 (MYB); m=37/57; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.60092; ---mbCAACTGhm--- ; cor=; Ncor= a 0 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 0 c 0 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 0 g 0 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 0 t 0 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0 0

MA1570.1_rc_shift3 (TFAP4(var.2)_rc)
; oligos_6nt_mkv3_m2 versus MA1570.1_rc (TFAP4(var.2)_rc); m=38/57; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.59963; ---amCAyrTGdt--- ; cor=; Ncor= a 0 0 0 479.0 206.0 0.0 479.0 0.0 479.0 0.0 0.0 129.0 39.0 0 0 0 c 0 0 0 110.0 156.0 479.0 0.0 287.0 161.0 14.0 0.0 0.0 197.0 0 0 0 g 0 0 0 210.0 14.0 3.0 0.0 149.0 220.0 0.0 479.0 144.0 130.0 0 0 0 t 0 0 0 60.0 103.0 0.0 0.0 479.0 0.0 479.0 0.0 217.0 479.0 0 0 0

MA0816.1_shift3 (Ascl2)
; oligos_6nt_mkv3_m2 versus MA0816.1 (Ascl2); m=39/57; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.599006; ---arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA0825.1_rc_shift3 (MNT_rc)
; oligos_6nt_mkv3_m2 versus MA0825.1_rc (MNT_rc); m=40/57; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.598938; ---rgCACGTGbt--- ; cor=; Ncor= a 0 0 0 219.0 120.0 25.0 681.0 0.0 16.0 21.0 5.0 63.0 129.0 0 0 0 c 0 0 0 75.0 131.0 681.0 15.0 681.0 7.0 0.0 0.0 203.0 145.0 0 0 0 g 0 0 0 229.0 281.0 0.0 0.0 0.0 681.0 0.0 681.0 228.0 128.0 0 0 0 t 0 0 0 159.0 150.0 0.0 0.0 15.0 0.0 681.0 27.0 187.0 279.0 0 0 0

MA0058.3_rc_shift3 (MAX_rc)
; oligos_6nt_mkv3_m2 versus MA0058.3_rc (MAX_rc); m=41/57; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.598718; ---rgCACGTGkt--- ; cor=; Ncor= a 0 0 0 2543.0 1446.0 36.0 6876.0 19.0 229.0 38.0 0.0 637.0 719.0 0 0 0 c 0 0 0 986.0 1638.0 6876.0 20.0 6876.0 7.0 87.0 0.0 1514.0 1295.0 0 0 0 g 0 0 0 2225.0 2450.0 27.0 159.0 39.0 6876.0 0.0 6876.0 2809.0 1556.0 0 0 0 t 0 0 0 1122.0 1341.0 0.0 69.0 329.0 0.0 6876.0 39.0 1915.0 3307.0 0 0 0

MA1638.1_rc_shift3 (HAND2_rc)
; oligos_6nt_mkv3_m2 versus MA1638.1_rc (HAND2_rc); m=42/57; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.598227; ---rvCATCTGkt--- ; cor=; Ncor= a 0 0 0 7783.0 8498.0 49.0 27962.0 23.0 85.0 4.0 70.0 3155.0 7120.0 0 0 0 c 0 0 0 6108.0 8878.0 29851.0 31.0 38.0 30144.0 647.0 132.0 6994.0 7463.0 0 0 0 g 0 0 0 10227.0 7690.0 149.0 2276.0 30.0 42.0 410.0 30062.0 11298.0 5564.0 0 0 0 t 0 0 0 6165.0 5217.0 234.0 14.0 30192.0 12.0 29222.0 19.0 8836.0 10136.0 0 0 0

MA1635.1_rc_shift3 (BHLHE22(var.2)_rc)
; oligos_6nt_mkv3_m2 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=43/57; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.596487; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA0649.1_rc_shift3 (HEY2_rc)
; oligos_6nt_mkv3_m2 versus MA0649.1_rc (HEY2_rc); m=44/57; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.588778; ---grCACGTGyC--- ; cor=; Ncor= a 0 0 0 264.0 753.0 30.0 1800.0 0.0 0.0 0.0 58.0 224.0 101.0 0 0 0 c 0 0 0 382.0 128.0 1800.0 0.0 1800.0 0.0 128.0 83.0 620.0 1800.0 0 0 0 g 0 0 0 869.0 1047.0 34.0 120.0 72.0 1800.0 0.0 1800.0 305.0 99.0 0 0 0 t 0 0 0 285.0 50.0 0.0 36.0 27.0 7.0 1800.0 84.0 651.0 107.0 0 0 0

MA0691.1_rc_shift3 (TFAP4_rc)
; oligos_6nt_mkv3_m2 versus MA0691.1_rc (TFAP4_rc); m=45/57; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.587561; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA0807.1_rc_shift2 (TBX5_rc)
; oligos_6nt_mkv3_m2 versus MA0807.1_rc (TBX5_rc); m=46/57; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.568555; --TmACACCT------ ; cor=; Ncor= a 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 c 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 g 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 t 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0

MA0806.1_rc_shift2 (TBX4_rc)
; oligos_6nt_mkv3_m2 versus MA0806.1_rc (TBX4_rc); m=47/57; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.557459; --TcACACCT------ ; cor=; Ncor= a 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 0 0 c 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 0 0 g 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 0 0 t 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0 0 0

MA0803.1_rc_shift2 (TBX15_rc)
; oligos_6nt_mkv3_m2 versus MA0803.1_rc (TBX15_rc); m=48/57; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.533519; --TCACACCT------ ; cor=; Ncor= a 0 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 0 0 0 0 0 c 0 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 0 0 0 0 0 g 0 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 0 0 0 0 0 t 0 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0 0 0 0 0 0

MA0608.1_shift3 (Creb3l2)
; oligos_6nt_mkv3_m2 versus MA0608.1 (Creb3l2); m=49/57; ncol2=9; w=9; offset=1; strand=D; shift=3; score=0.525893; ---KmCACGTGd---- ; cor=; Ncor= a 0 0 0 2.0 250.0 1.0 996.0 1.0 1.0 1.0 1.0 250.0 0 0 0 0 c 0 0 0 2.0 623.0 872.0 1.0 996.0 1.0 1.0 143.0 2.0 0 0 0 0 g 0 0 0 745.0 1.0 126.0 1.0 1.0 996.0 1.0 854.0 250.0 0 0 0 0 t 0 0 0 250.0 126.0 1.0 1.0 1.0 1.0 996.0 1.0 498.0 0 0 0 0

MA0805.1_rc_shift2 (TBX1_rc)
; oligos_6nt_mkv3_m2 versus MA0805.1_rc (TBX1_rc); m=50/57; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.518636; --TCACACCT------ ; cor=; Ncor= a 0 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 0 0 0 c 0 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 0 0 0 g 0 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 0 0 0 t 0 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0 0 0 0

MA0801.1_rc_shift2 (MGA_rc)
; oligos_6nt_mkv3_m2 versus MA0801.1_rc (MGA_rc); m=51/57; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.509278; --TCACACCT------ ; cor=; Ncor= a 0 0 274.0 6465.0 30489.0 11.0 30489.0 104.0 1929.0 4160.0 0 0 0 0 0 0 c 0 0 920.0 30489.0 381.0 30489.0 96.0 30489.0 30489.0 8873.0 0 0 0 0 0 0 g 0 0 110.0 1753.0 3089.0 1.0 3534.0 509.0 3737.0 1151.0 0 0 0 0 0 0 t 0 0 30489.0 689.0 1042.0 14.0 12.0 16.0 4310.0 30489.0 0 0 0 0 0 0

MA0622.1_shift4 (Mlxip)
; oligos_6nt_mkv3_m2 versus MA0622.1 (Mlxip); m=52/57; ncol2=8; w=8; offset=2; strand=D; shift=4; score=0.508415; ----bCACGTGk---- ; cor=; Ncor= a 0 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 0 0 0 0 c 0 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 0 0 0 0 g 0 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 0 0 0 0 t 0 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0 0 0 0 0

MA1567.1_rc_shift1 (TBX6_rc)
; oligos_6nt_mkv3_m2 versus MA1567.1_rc (TBX6_rc); m=53/57; ncol2=10; w=9; offset=-1; strand=R; shift=1; score=0.508411; -tTmACACcty----- ; cor=; Ncor= a 0 2330.0 713.0 5964.0 11087.0 12.0 11087.0 0.0 1058.0 2157.0 2456.0 0 0 0 0 0 c 0 2141.0 2251.0 11087.0 320.0 11087.0 0.0 11087.0 11087.0 3347.0 4003.0 0 0 0 0 0 g 0 2066.0 652.0 4876.0 3053.0 0.0 1002.0 63.0 2913.0 1173.0 1630.0 0 0 0 0 0 t 0 4550.0 11087.0 1430.0 552.0 14.0 44.0 58.0 1882.0 11087.0 2998.0 0 0 0 0 0

MA1566.1_rc_shift1 (TBX3_rc)
; oligos_6nt_mkv3_m2 versus MA1566.1_rc (TBX3_rc); m=54/57; ncol2=10; w=9; offset=-1; strand=R; shift=1; score=0.498094; -ttsACACcty----- ; cor=; Ncor= a 0 578.0 484.0 1112.0 2544.0 0.0 2544.0 0.0 302.0 760.0 497.0 0 0 0 0 0 c 0 620.0 947.0 2544.0 155.0 2544.0 0.0 2544.0 2544.0 1207.0 1003.0 0 0 0 0 0 g 0 586.0 410.0 1471.0 634.0 0.0 735.0 45.0 862.0 481.0 399.0 0 0 0 0 0 t 0 760.0 2544.0 170.0 115.0 0.0 16.0 6.0 427.0 2544.0 644.0 0 0 0 0 0

MA0802.1_rc_shift0 (TBR1_rc)
; oligos_6nt_mkv3_m2 versus MA0802.1_rc (TBR1_rc); m=55/57; ncol2=10; w=8; offset=-2; strand=R; shift=0; score=0.452467; tTTCACACCT------ ; cor=; Ncor= a 5846.0 4576.0 205.0 7001.0 34509.0 4.0 34509.0 213.0 4480.0 1433.0 0 0 0 0 0 0 c 4537.0 1488.0 584.0 34509.0 157.0 34509.0 88.0 34509.0 34509.0 3329.0 0 0 0 0 0 0 g 5619.0 2575.0 90.0 2551.0 4742.0 6.0 1759.0 254.0 3255.0 359.0 0 0 0 0 0 0 t 18507.0 25869.0 34509.0 1175.0 2386.0 0.0 39.0 70.0 6880.0 34509.0 0 0 0 0 0 0

MA0774.1_rc_shift7 (MEIS2_rc)
; oligos_6nt_mkv3_m2 versus MA0774.1_rc (MEIS2_rc); m=56/57; ncol2=8; w=7; offset=5; strand=R; shift=7; score=0.42523; -------sCTGTCAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 c 0 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 g 0 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 t 0 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0

MA0775.1_rc_shift7 (MEIS3_rc)
; oligos_6nt_mkv3_m2 versus MA0775.1_rc (MEIS3_rc); m=57/57; ncol2=8; w=7; offset=5; strand=R; shift=7; score=0.410922; -------scTGTCAw- ; cor=; Ncor= a 0 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 c 0 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 g 0 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 t 0 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m23_shift3 ; 42 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m23_shift3 (oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23)
; oligos_8nt_mkv5_m23 (oligos_8nt_mkv5_m23oligos_8nt_mkv5_m23); m=0 (reference); ncol1=13; shift=3; ncol=16; ---rrAACAGaTGGys ; Alignment reference a 0 0 0 79 82 250 283 1 310 15 204 5 0 8 51 72 c 0 0 0 54 61 20 4 304 1 6 42 1 0 20 96 99 g 0 0 0 130 122 39 24 6 0 292 59 0 311 274 78 84 t 0 0 0 51 49 5 3 3 3 1 9 308 3 12 89 59

MA1642.1_shift3 (NEUROG2(var.2))
; oligos_8nt_mkv5_m23 versus MA1642.1 (NEUROG2(var.2)); m=1/41; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.92728; ---rrraCAGATGGyv ; cor=; Ncor= a 0 0 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 9464.0 c 0 0 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 9034.0 g 0 0 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 8709.0 t 0 0 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0 7184.0

MA1109.1_shift4 (NEUROD1)
; oligos_8nt_mkv5_m23 versus MA1109.1 (NEUROD1); m=2/41; ncol2=13; w=12; offset=1; strand=D; shift=4; score=0.805629; ----graCAGATGGyr ; cor=; Ncor= a 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 c 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 g 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 t 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0

MA0499.2_rc_shift3 (MYOD1_rc)
; oligos_8nt_mkv5_m23 versus MA0499.2_rc (MYOD1_rc); m=3/41; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.792462; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0

MA0745.2_rc_shift3 (SNAI2_rc)
; oligos_8nt_mkv5_m23 versus MA0745.2_rc (SNAI2_rc); m=4/41; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.745702; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0

MA1618.1_shift4 (Ptf1a)
; oligos_8nt_mkv5_m23 versus MA1618.1 (Ptf1a); m=5/41; ncol2=13; w=12; offset=1; strand=D; shift=4; score=0.730524; ----dmaCAGATGttk ; cor=; Ncor= a 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 c 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 g 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 t 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0

MA1123.2_shift3 (TWIST1)
; oligos_8nt_mkv5_m23 versus MA1123.2 (TWIST1); m=6/41; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.72792; ---awwCCAGATGtbt ; cor=; Ncor= a 0 0 0 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 6823.0 c 0 0 0 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 6561.0 g 0 0 0 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 6213.0 t 0 0 0 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0 7736.0

MA1524.1_rc_shift4 (MSGN1_rc)
; oligos_8nt_mkv5_m23 versus MA1524.1_rc (MSGN1_rc); m=7/41; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.713655; ----srmCAwwTGGys ; cor=; Ncor= a 0 0 0 0 1228.0 3104.0 3269.0 0.0 6373.0 2607.0 3950.0 0.0 0.0 726.0 408.0 1488.0 c 0 0 0 0 1781.0 1503.0 3104.0 6373.0 17.0 814.0 112.0 374.0 17.0 1613.0 3277.0 1615.0 g 0 0 0 0 1976.0 3269.0 1132.0 10.0 287.0 190.0 627.0 0.0 6373.0 6373.0 576.0 2080.0 t 0 0 0 0 1388.0 514.0 412.0 0.0 10.0 3766.0 2424.0 6373.0 0.0 663.0 3096.0 1190.0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; oligos_8nt_mkv5_m23 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=8/41; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.705557; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0

MA1621.1_rc_shift3 (Rbpjl_rc)
; oligos_8nt_mkv5_m23 versus MA1621.1_rc (Rbpjl_rc); m=9/41; ncol2=14; w=13; offset=0; strand=R; shift=3; score=0.701521; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0

MA0521.1_shift5 (Tcf12)
; oligos_8nt_mkv5_m23 versus MA0521.1 (Tcf12); m=10/41; ncol2=11; w=11; offset=2; strand=D; shift=5; score=0.699795; -----rRCAGCTGswg ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0

MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)
; oligos_8nt_mkv5_m23 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=11/41; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.693442; ----rmaCAGCTGtky ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0

MA1641.1_shift4 (MYF5)
; oligos_8nt_mkv5_m23 versus MA1641.1 (MYF5); m=12/41; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.692782; ----gvaCAGCTGtbc ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0

MA1485.1_rc_shift3 (FERD3L_rc)
; oligos_8nt_mkv5_m23 versus MA1485.1_rc (FERD3L_rc); m=13/41; ncol2=14; w=13; offset=0; strand=R; shift=3; score=0.691835; ---GTrACAGCTGkyr ; cor=; Ncor= a 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 c 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 g 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 t 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0

MA0832.1_shift3 (Tcf21)
; oligos_8nt_mkv5_m23 versus MA0832.1 (Tcf21); m=14/41; ncol2=14; w=13; offset=0; strand=D; shift=3; score=0.688766; ---ryAACAGCTGTTr ; cor=; Ncor= a 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 c 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 g 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 t 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0

MA0091.1_rc_shift5 (TAL1::TCF3_rc)
; oligos_8nt_mkv5_m23 versus MA0091.1_rc (TAL1::TCF3_rc); m=15/41; ncol2=12; w=11; offset=2; strand=R; shift=5; score=0.681044; -----AmCAKMTGkTc ; cor=; Ncor= a 0 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 c 0 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 g 0 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 t 0 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0

MA0500.2_rc_shift4 (MYOG_rc)
; oligos_8nt_mkv5_m23 versus MA0500.2_rc (MYOG_rc); m=16/41; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.659717; ----sarCAGCTGyts ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0

MA0817.1_shift4 (BHLHE23)
; oligos_8nt_mkv5_m23 versus MA0817.1 (BHLHE23); m=17/41; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.657511; ----aAmCATATGkTw ; cor=; Ncor= a 0 0 0 0 2550.0 5005.0 2779.0 21.0 5005.0 0.0 5005.0 47.0 0.0 13.0 243.0 1523.0 c 0 0 0 0 686.0 55.0 1286.0 5005.0 0.0 4.0 5.0 115.0 4.0 1203.0 1468.0 911.0 g 0 0 0 0 858.0 890.0 932.0 0.0 67.0 1.0 3.0 5.0 5005.0 1771.0 92.0 964.0 t 0 0 0 0 912.0 44.0 8.0 0.0 17.0 5005.0 0.0 5005.0 7.0 2018.0 5005.0 1606.0

MA1638.1_shift5 (HAND2)
; oligos_8nt_mkv5_m23 versus MA1638.1 (HAND2); m=18/41; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.652855; -----amCAGATGby- ; cor=; Ncor= a 0 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 c 0 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 g 0 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 t 0 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0

MA0743.2_shift0 (SCRT1)
; oligos_8nt_mkv5_m23 versus MA0743.2 (SCRT1); m=19/41; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.632957; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0

MA0744.2_shift0 (SCRT2)
; oligos_8nt_mkv5_m23 versus MA0744.2 (SCRT2); m=20/41; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.628781; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0

MA0820.1_rc_shift5 (FIGLA_rc)
; oligos_8nt_mkv5_m23 versus MA0820.1_rc (FIGLA_rc); m=21/41; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.625524; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0

MA1472.1_rc_shift5 (BHLHA15(var.2)_rc)
; oligos_8nt_mkv5_m23 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=22/41; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.625102; -----rrCAGCTGbt- ; cor=; Ncor= a 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 c 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 g 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 t 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0

MA0633.1_rc_shift5 (Twist2_rc)
; oligos_8nt_mkv5_m23 versus MA0633.1_rc (Twist2_rc); m=23/41; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.60926; -----mACATATGky- ; cor=; Ncor= a 0 0 0 0 0 365.0 745.0 0.0 1000.0 0.0 783.0 0.0 0.0 69.0 200.0 0 c 0 0 0 0 0 272.0 155.0 1000.0 0.0 211.0 0.0 0.0 0.0 69.0 298.0 0 g 0 0 0 0 0 181.0 50.0 0.0 0.0 0.0 217.0 0.0 1000.0 580.0 200.0 0 t 0 0 0 0 0 181.0 50.0 0.0 0.0 789.0 0.0 1000.0 0.0 282.0 302.0 0

MA1570.1_shift5 (TFAP4(var.2))
; oligos_8nt_mkv5_m23 versus MA1570.1 (TFAP4(var.2)); m=24/41; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.607124; -----ahCAyrTGkt- ; cor=; Ncor= a 0 0 0 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 c 0 0 0 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 g 0 0 0 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 t 0 0 0 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0

MA0665.1_rc_shift5 (MSC_rc)
; oligos_8nt_mkv5_m23 versus MA0665.1_rc (MSC_rc); m=25/41; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.598993; -----AACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0

MA1467.1_shift5 (ATOH1(var.2))
; oligos_8nt_mkv5_m23 versus MA1467.1 (ATOH1(var.2)); m=26/41; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.595308; -----AACAGCTGTY- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0

MA0461.2_shift5 (Atoh1)
; oligos_8nt_mkv5_m23 versus MA0461.2 (Atoh1); m=27/41; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.582845; -----rmCATATGky- ; cor=; Ncor= a 0 0 0 0 0 655.0 523.0 42.0 1027.0 17.0 1027.0 22.0 2.0 34.0 128.0 0 c 0 0 0 0 0 108.0 334.0 1027.0 20.0 10.0 74.0 4.0 1.0 234.0 494.0 0 g 0 0 0 0 0 372.0 149.0 8.0 34.0 136.0 0.0 5.0 1027.0 376.0 126.0 0 t 0 0 0 0 0 59.0 21.0 0.0 0.0 1027.0 0.0 1027.0 31.0 384.0 533.0 0

MA0667.1_rc_shift5 (MYF6_rc)
; oligos_8nt_mkv5_m23 versus MA0667.1_rc (MYF6_rc); m=28/41; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.581243; -----RACAGyTGTT- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 c 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 g 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 t 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0

MA1559.1_shift5 (SNAI3)
; oligos_8nt_mkv5_m23 versus MA1559.1 (SNAI3); m=29/41; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.579052; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0

MA0691.1_shift5 (TFAP4)
; oligos_8nt_mkv5_m23 versus MA0691.1 (TFAP4); m=30/41; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.578183; -----AwCAGCTGwT- ; cor=; Ncor= a 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 c 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 g 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 t 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0

MA1468.1_shift5 (ATOH7)
; oligos_8nt_mkv5_m23 versus MA1468.1 (ATOH7); m=31/41; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.574668; -----AmCATATGky- ; cor=; Ncor= a 0 0 0 0 0 712.0 302.0 0.0 712.0 15.0 712.0 0.0 0.0 5.0 17.0 0 c 0 0 0 0 0 97.0 211.0 712.0 0.0 106.0 180.0 25.0 0.0 155.0 400.0 0 g 0 0 0 0 0 142.0 154.0 0.0 102.0 59.0 78.0 25.0 712.0 261.0 2.0 0 t 0 0 0 0 0 62.0 45.0 0.0 58.0 712.0 0.0 712.0 0.0 291.0 312.0 0

MA0816.1_rc_shift5 (Ascl2_rc)
; oligos_8nt_mkv5_m23 versus MA0816.1_rc (Ascl2_rc); m=32/41; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.557699; -----rrCAGCTGyt- ; cor=; Ncor= a 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 c 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 g 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 t 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0

MA0826.1_shift5 (OLIG1)
; oligos_8nt_mkv5_m23 versus MA0826.1 (OLIG1); m=33/41; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.556503; -----AmCATATGkT- ; cor=; Ncor= a 0 0 0 0 0 11391.0 5931.0 52.0 11391.0 12.0 11391.0 195.0 0.0 12.0 490.0 0 c 0 0 0 0 0 240.0 4142.0 11391.0 1.0 15.0 80.0 175.0 0.0 2082.0 2812.0 0 g 0 0 0 0 0 1526.0 1321.0 0.0 139.0 113.0 17.0 0.0 11391.0 4568.0 257.0 0 t 0 0 0 0 0 205.0 0.0 0.0 80.0 11391.0 10.0 11391.0 74.0 4730.0 11391.0 0

MA1100.2_shift5 (ASCL1)
; oligos_8nt_mkv5_m23 versus MA1100.2 (ASCL1); m=34/41; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.554233; -----rrCAGCTGcy- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0

MA1635.1_shift5 (BHLHE22(var.2))
; oligos_8nt_mkv5_m23 versus MA1635.1 (BHLHE22(var.2)); m=35/41; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.548957; -----csCAGCTGsg- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 c 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 g 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 t 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0

MA0100.3_rc_shift5 (MYB_rc)
; oligos_8nt_mkv5_m23 versus MA0100.3_rc (MYB_rc); m=36/41; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.543636; -----kdCAGTTGvk- ; cor=; Ncor= a 0 0 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 c 0 0 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 g 0 0 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 t 0 0 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0

MA0669.1_shift5 (NEUROG2)
; oligos_8nt_mkv5_m23 versus MA0669.1 (NEUROG2); m=37/41; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.542958; -----raCATATGtY- ; cor=; Ncor= a 0 0 0 0 0 246.0 426.0 1.0 426.0 4.0 426.0 5.0 0.0 3.0 0.0 0 c 0 0 0 0 0 2.0 150.0 426.0 0.0 5.0 8.0 3.0 0.0 170.0 307.0 0 g 0 0 0 0 0 180.0 65.0 0.0 3.0 20.0 5.0 0.0 426.0 147.0 0.0 0 t 0 0 0 0 0 0.0 0.0 5.0 0.0 426.0 0.0 426.0 0.0 426.0 119.0 0

MA1558.1_shift5 (SNAI1)
; oligos_8nt_mkv5_m23 versus MA1558.1 (SNAI1); m=38/41; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.542685; -----drCAGGTGyr- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0

MA0827.1_rc_shift5 (OLIG3_rc)
; oligos_8nt_mkv5_m23 versus MA0827.1_rc (OLIG3_rc); m=39/41; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.541352; -----rvCATATGkT- ; cor=; Ncor= a 0 0 0 0 0 1915.0 1010.0 275.0 1915.0 0.0 1915.0 22.0 3.0 6.0 132.0 0 c 0 0 0 0 0 176.0 904.0 1915.0 2.0 11.0 72.0 99.0 0.0 208.0 427.0 0 g 0 0 0 0 0 964.0 662.0 4.0 224.0 103.0 26.0 10.0 1915.0 1115.0 204.0 0 t 0 0 0 0 0 265.0 28.0 4.0 56.0 1915.0 0.0 1915.0 222.0 800.0 1915.0 0

MA0607.1_rc_shift6 (Bhlha15_rc)
; oligos_8nt_mkv5_m23 versus MA0607.1_rc (Bhlha15_rc); m=40/41; ncol2=8; w=8; offset=3; strand=R; shift=6; score=0.513104; ------aCATATGs-- ; cor=; Ncor= a 0 0 0 0 0 0 614.0 0.0 999.0 0.0 799.0 0.0 0.0 1.0 0 0 c 0 0 0 0 0 0 154.0 999.0 0.0 0.0 200.0 0.0 0.0 286.0 0 0 g 0 0 0 0 0 0 231.0 0.0 0.0 200.0 0.0 0.0 999.0 571.0 0 0 t 0 0 0 0 0 0 1.0 0.0 0.0 799.0 0.0 999.0 0.0 143.0 0 0

MA1647.1_rc_shift1 (PRDM4_rc)
; oligos_8nt_mkv5_m23 versus MA1647.1_rc (PRDM4_rc); m=41/41; ncol2=11; w=9; offset=-2; strand=R; shift=1; score=0.453658; -twGAAACAGhy---- ; cor=; Ncor= a 0 1799.0 2962.0 292.0 6811.0 6288.0 6889.0 39.0 5543.0 154.0 2123.0 1559.0 0 0 0 0 c 0 1344.0 726.0 129.0 111.0 393.0 82.0 6813.0 566.0 316.0 2079.0 2553.0 0 0 0 0 g 0 1532.0 1456.0 6353.0 138.0 405.0 137.0 110.0 286.0 6504.0 1012.0 1163.0 0 0 0 0 t 0 2580.0 2111.0 481.0 195.0 169.0 147.0 293.0 860.0 281.0 2041.0 1980.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m14_shift4 ; 33 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m14_shift4 (oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14)
; oligos_8nt_mkv5_m14 (oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14); m=0 (reference); ncol1=13; shift=4; ncol=19; ----ssATGAGTCACms-- ; Alignment reference a 0 0 0 0 49 53 184 3 1 232 6 2 5 241 0 76 54 0 0 c 0 0 0 0 73 80 32 3 2 5 20 9 225 3 206 79 80 0 0 g 0 0 0 0 79 75 30 2 237 1 215 5 9 1 27 34 69 0 0 t 0 0 0 0 47 40 2 240 8 10 7 232 9 3 15 59 45 0 0

MA1141.1_shift4 (FOS::JUND)
; oligos_8nt_mkv5_m14 versus MA1141.1 (FOS::JUND); m=1/32; ncol2=13; w=13; offset=0; strand=D; shift=4; score=0.92654; ----kkrTGAGTCAymv-- ; cor=; Ncor= a 0 0 0 0 183.0 182.0 593.0 0.0 0.0 894.0 75.0 0.0 29.0 999.0 21.0 250.0 264.0 0 0 c 0 0 0 0 244.0 167.0 104.0 1.0 0.0 91.0 40.0 0.0 970.0 0.0 290.0 370.0 264.0 0 0 g 0 0 0 0 315.0 389.0 266.0 0.0 871.0 0.0 867.0 0.0 0.0 0.0 77.0 195.0 292.0 0 0 t 0 0 0 0 258.0 263.0 38.0 999.0 129.0 15.0 19.0 999.0 0.0 0.0 612.0 185.0 180.0 0 0

MA0477.2_rc_shift4 (FOSL1_rc)
; oligos_8nt_mkv5_m14 versus MA0477.2_rc (FOSL1_rc); m=2/32; ncol2=13; w=13; offset=0; strand=R; shift=4; score=0.924328; ----rdaTGAGTCAtyh-- ; cor=; Ncor= a 0 0 0 0 15023.0 15056.0 38033.0 363.0 559.0 55860.0 2591.0 302.0 2246.0 56778.0 2795.0 13887.0 15363.0 0 0 c 0 0 0 0 11065.0 12314.0 6533.0 566.0 278.0 598.0 8615.0 286.0 54619.0 183.0 13127.0 16855.0 14848.0 0 0 g 0 0 0 0 17637.0 15640.0 10399.0 344.0 53711.0 163.0 43918.0 287.0 301.0 460.0 6703.0 11018.0 12491.0 0 0 t 0 0 0 0 13956.0 14671.0 2716.0 56408.0 3133.0 1060.0 2557.0 56806.0 515.0 260.0 35056.0 15921.0 14979.0 0 0

MA1128.1_rc_shift4 (FOSL1::JUN_rc)
; oligos_8nt_mkv5_m14 versus MA1128.1_rc (FOSL1::JUN_rc); m=3/32; ncol2=13; w=13; offset=0; strand=R; shift=4; score=0.921864; ----kkaTGAGTCAymm-- ; cor=; Ncor= a 0 0 0 0 196.0 223.0 579.0 4.0 4.0 826.0 97.0 3.0 38.0 996.0 26.0 289.0 293.0 0 0 c 0 0 0 0 237.0 173.0 119.0 9.0 2.0 140.0 51.0 2.0 957.0 1.0 283.0 380.0 253.0 0 0 g 0 0 0 0 289.0 308.0 245.0 4.0 835.0 2.0 826.0 2.0 2.0 2.0 89.0 159.0 246.0 0 0 t 0 0 0 0 277.0 296.0 57.0 984.0 159.0 33.0 26.0 994.0 3.0 1.0 602.0 172.0 208.0 0 0

MA0491.2_rc_shift4 (JUND_rc)
; oligos_8nt_mkv5_m14 versus MA0491.2_rc (JUND_rc); m=4/32; ncol2=13; w=13; offset=0; strand=R; shift=4; score=0.91197; ----ddATGAGTCAtyw-- ; cor=; Ncor= a 0 0 0 0 28704.0 27477.0 83216.0 809.0 1449.0 102249.0 4650.0 925.0 3920.0 104101.0 5020.0 25652.0 30507.0 0 0 c 0 0 0 0 19236.0 22249.0 7908.0 965.0 953.0 1147.0 20633.0 573.0 99787.0 443.0 20586.0 31347.0 25006.0 0 0 g 0 0 0 0 29793.0 28250.0 12025.0 751.0 98628.0 496.0 76028.0 650.0 873.0 757.0 10173.0 19712.0 21965.0 0 0 t 0 0 0 0 28212.0 27969.0 2796.0 103420.0 4915.0 2053.0 4634.0 103797.0 1365.0 644.0 70166.0 29234.0 28467.0 0 0

MA1137.1_rc_shift4 (FOSL1::JUNB_rc)
; oligos_8nt_mkv5_m14 versus MA1137.1_rc (FOSL1::JUNB_rc); m=5/32; ncol2=13; w=13; offset=0; strand=R; shift=4; score=0.91051; ----gkaTKAgTCAymr-- ; cor=; Ncor= a 0 0 0 0 230.0 198.0 552.0 37.0 37.0 803.0 113.0 42.0 63.0 945.0 47.0 263.0 300.0 0 0 c 0 0 0 0 223.0 204.0 170.0 38.0 9.0 115.0 198.0 21.0 880.0 16.0 287.0 376.0 195.0 0 0 g 0 0 0 0 300.0 298.0 225.0 21.0 683.0 23.0 626.0 20.0 21.0 16.0 100.0 146.0 269.0 0 0 t 0 0 0 0 247.0 300.0 53.0 904.0 271.0 59.0 63.0 917.0 36.0 23.0 566.0 216.0 237.0 0 0

MA0490.2_rc_shift4 (JUNB_rc)
; oligos_8nt_mkv5_m14 versus MA0490.2_rc (JUNB_rc); m=6/32; ncol2=13; w=13; offset=0; strand=R; shift=4; score=0.899502; ----dwATGAGTCAThw-- ; cor=; Ncor= a 0 0 0 0 22998.0 22591.0 59750.0 693.0 797.0 76655.0 4798.0 682.0 3779.0 78342.0 3866.0 20085.0 22351.0 0 0 c 0 0 0 0 15068.0 16491.0 7508.0 900.0 617.0 913.0 10519.0 550.0 74757.0 322.0 11566.0 20403.0 18150.0 0 0 g 0 0 0 0 20653.0 19230.0 8876.0 588.0 73199.0 289.0 59784.0 523.0 550.0 654.0 7817.0 15807.0 16583.0 0 0 t 0 0 0 0 21137.0 21544.0 3722.0 77675.0 5243.0 1999.0 4755.0 78101.0 770.0 538.0 56607.0 23561.0 22772.0 0 0

MA1622.1_rc_shift4 (Smad2::Smad3_rc)
; oligos_8nt_mkv5_m14 versus MA1622.1_rc (Smad2::Smad3_rc); m=7/32; ncol2=14; w=13; offset=0; strand=R; shift=4; score=0.871745; ----kwaTGAGTCAymay- ; cor=; Ncor= a 0 0 0 0 2480.0 2764.0 5636.0 125.0 101.0 9977.0 696.0 102.0 405.0 10151.0 794.0 2725.0 2998.0 2481.0 0 c 0 0 0 0 2524.0 2154.0 1979.0 79.0 90.0 68.0 1542.0 58.0 9768.0 56.0 2888.0 3479.0 2324.0 2615.0 0 g 0 0 0 0 2595.0 2479.0 2047.0 85.0 9443.0 53.0 7480.0 44.0 82.0 59.0 2212.0 1642.0 2515.0 2254.0 0 t 0 0 0 0 2746.0 2948.0 683.0 10056.0 711.0 247.0 627.0 10141.0 90.0 79.0 4451.0 2499.0 2508.0 2995.0 0

MA1130.1_shift4 (FOSL2::JUN)
; oligos_8nt_mkv5_m14 versus MA1130.1 (FOSL2::JUN); m=8/32; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.851447; ----kkrTGAGTCAym--- ; cor=; Ncor= a 0 0 0 0 189.0 214.0 542.0 1.0 1.0 847.0 103.0 1.0 20.0 998.0 19.0 269.0 0 0 0 c 0 0 0 0 248.0 179.0 121.0 1.0 1.0 123.0 141.0 1.0 979.0 0.0 299.0 341.0 0 0 0 g 0 0 0 0 295.0 338.0 282.0 1.0 840.0 1.0 698.0 1.0 1.0 1.0 93.0 180.0 0 0 0 t 0 0 0 0 268.0 269.0 55.0 998.0 158.0 29.0 58.0 998.0 1.0 1.0 589.0 209.0 0 0 0

MA1134.1_shift5 (FOS::JUNB)
; oligos_8nt_mkv5_m14 versus MA1134.1 (FOS::JUNB); m=9/32; ncol2=12; w=12; offset=1; strand=D; shift=5; score=0.840192; -----krTGAsTCAymv-- ; cor=; Ncor= a 0 0 0 0 0 174.0 593.0 1.0 1.0 965.0 48.0 1.0 27.0 998.0 7.0 275.0 283.0 0 0 c 0 0 0 0 0 168.0 105.0 1.0 1.0 30.0 309.0 1.0 971.0 1.0 284.0 363.0 304.0 0 0 g 0 0 0 0 0 372.0 267.0 1.0 868.0 1.0 618.0 3.0 1.0 1.0 51.0 178.0 256.0 0 0 t 0 0 0 0 0 286.0 36.0 998.0 131.0 4.0 25.0 996.0 1.0 1.0 658.0 184.0 156.0 0 0

MA0476.1_rc_shift5 (FOS_rc)
; oligos_8nt_mkv5_m14 versus MA0476.1_rc (FOS_rc); m=10/32; ncol2=11; w=11; offset=1; strand=R; shift=5; score=0.794551; -----vATGAsTCAbh--- ; cor=; Ncor= a 0 0 0 0 0 9257.0 21777.0 0.0 0.0 29396.0 3113.0 0.0 2288.0 29396.0 903.0 11119.0 0 0 0 c 0 0 0 0 0 7897.0 1538.0 0.0 0.0 0.0 11206.0 0.0 27108.0 0.0 10841.0 9686.0 0 0 0 g 0 0 0 0 0 8236.0 5823.0 0.0 29396.0 0.0 14079.0 0.0 0.0 0.0 10177.0 712.0 0 0 0 t 0 0 0 0 0 4006.0 258.0 29396.0 0.0 0.0 998.0 29396.0 0.0 0.0 7475.0 7879.0 0 0 0

MA0478.1_rc_shift6 (FOSL2_rc)
; oligos_8nt_mkv5_m14 versus MA0478.1_rc (FOSL2_rc); m=11/32; ncol2=11; w=11; offset=2; strand=R; shift=6; score=0.775466; ------vTGAsTCAyym-- ; cor=; Ncor= a 0 0 0 0 0 0 1986.0 0.0 0.0 5318.0 194.0 0.0 0.0 5318.0 74.0 494.0 1405.0 0 0 c 0 0 0 0 0 0 1933.0 0.0 0.0 0.0 1838.0 192.0 5318.0 0.0 2328.0 2707.0 2086.0 0 0 g 0 0 0 0 0 0 1399.0 0.0 5113.0 0.0 3286.0 51.0 0.0 0.0 55.0 592.0 994.0 0 0 t 0 0 0 0 0 0 0.0 5318.0 205.0 0.0 0.0 5075.0 0.0 0.0 2861.0 1525.0 833.0 0 0

MA1634.1_rc_shift5 (BATF_rc)
; oligos_8nt_mkv5_m14 versus MA1634.1_rc (BATF_rc); m=12/32; ncol2=11; w=11; offset=1; strand=R; shift=5; score=0.773232; -----daTGAGTCAtw--- ; cor=; Ncor= a 0 0 0 0 0 12902.0 21615.0 754.0 1276.0 44736.0 2051.0 471.0 4682.0 45887.0 6875.0 16219.0 0 0 0 c 0 0 0 0 0 5919.0 9681.0 507.0 711.0 836.0 5573.0 341.0 40617.0 283.0 8627.0 11492.0 0 0 0 g 0 0 0 0 0 12048.0 7566.0 431.0 40279.0 306.0 37333.0 250.0 570.0 355.0 8931.0 5742.0 0 0 0 t 0 0 0 0 0 16139.0 8146.0 45316.0 4742.0 1130.0 2051.0 45946.0 1139.0 483.0 22575.0 13555.0 0 0 0

MA0462.2_rc_shift5 (BATF::JUN_rc)
; oligos_8nt_mkv5_m14 versus MA0462.2_rc (BATF::JUN_rc); m=13/32; ncol2=11; w=11; offset=1; strand=R; shift=5; score=0.772772; -----daTGAGTCAtw--- ; cor=; Ncor= a 0 0 0 0 0 10156.0 18005.0 558.0 907.0 36619.0 1399.0 320.0 3785.0 37330.0 5376.0 13310.0 0 0 0 c 0 0 0 0 0 4923.0 7745.0 424.0 522.0 539.0 4188.0 350.0 33135.0 182.0 6729.0 9317.0 0 0 0 g 0 0 0 0 0 9668.0 6105.0 318.0 32770.0 241.0 31168.0 204.0 400.0 275.0 7260.0 4762.0 0 0 0 t 0 0 0 0 0 13407.0 6299.0 36854.0 3955.0 755.0 1399.0 37280.0 834.0 367.0 18789.0 10765.0 0 0 0

MA0835.2_rc_shift5 (BATF3_rc)
; oligos_8nt_mkv5_m14 versus MA0835.2_rc (BATF3_rc); m=14/32; ncol2=11; w=11; offset=1; strand=R; shift=5; score=0.765097; -----waTGAGTCAtw--- ; cor=; Ncor= a 0 0 0 0 0 3456.0 5718.0 235.0 282.0 11502.0 408.0 116.0 1238.0 11737.0 1891.0 4503.0 0 0 0 c 0 0 0 0 0 1255.0 2249.0 117.0 88.0 117.0 560.0 87.0 10420.0 37.0 1831.0 2608.0 0 0 0 g 0 0 0 0 0 2733.0 1664.0 84.0 10347.0 79.0 10589.0 92.0 62.0 59.0 2106.0 1245.0 0 0 0 t 0 0 0 0 0 4521.0 2334.0 11529.0 1248.0 267.0 408.0 11670.0 245.0 132.0 6137.0 3609.0 0 0 0

MA0841.1_rc_shift5 (NFE2_rc)
; oligos_8nt_mkv5_m14 versus MA0841.1_rc (NFE2_rc); m=15/32; ncol2=11; w=11; offset=1; strand=R; shift=5; score= 0.7255; -----sATGAGTCATb--- ; cor=; Ncor= a 0 0 0 0 0 3417.0 18831.0 5.0 3.0 18831.0 17.0 4.0 2.0 18831.0 5.0 731.0 0 0 0 c 0 0 0 0 0 5067.0 10.0 8.0 0.0 3.0 4472.0 0.0 18831.0 0.0 1306.0 5303.0 0 0 0 g 0 0 0 0 0 9860.0 2689.0 13.0 18831.0 20.0 14360.0 11.0 0.0 8.0 9.0 7208.0 0 0 0 t 0 0 0 0 0 487.0 0.0 18831.0 1.0 0.0 37.0 18831.0 0.0 2.0 18831.0 5589.0 0 0 0

MA0099.3_shift6 (FOS::JUN)
; oligos_8nt_mkv5_m14 versus MA0099.3 (FOS::JUN); m=16/32; ncol2=10; w=10; offset=2; strand=D; shift=6; score=0.715513; ------rTGAGTCAym--- ; cor=; Ncor= a 0 0 0 0 0 0 592.0 3.0 7.0 820.0 78.0 5.0 30.0 992.0 24.0 277.0 0 0 0 c 0 0 0 0 0 0 111.0 5.0 1.0 131.0 180.0 2.0 963.0 2.0 313.0 397.0 0 0 0 g 0 0 0 0 0 0 257.0 2.0 824.0 4.0 688.0 2.0 3.0 2.0 95.0 164.0 0 0 0 t 0 0 0 0 0 0 40.0 990.0 168.0 45.0 54.0 991.0 4.0 4.0 568.0 162.0 0 0 0

MA1135.1_rc_shift6 (FOSB::JUNB_rc)
; oligos_8nt_mkv5_m14 versus MA1135.1_rc (FOSB::JUNB_rc); m=17/32; ncol2=10; w=10; offset=2; strand=R; shift=6; score=0.706363; ------rTGAsTCAym--- ; cor=; Ncor= a 0 0 0 0 0 0 578.0 1.0 1.0 958.0 61.0 1.0 19.0 998.0 20.0 270.0 0 0 0 c 0 0 0 0 0 0 126.0 1.0 1.0 39.0 309.0 1.0 980.0 1.0 321.0 429.0 0 0 0 g 0 0 0 0 0 0 259.0 0.0 808.0 1.0 596.0 1.0 0.0 0.0 61.0 182.0 0 0 0 t 0 0 0 0 0 0 37.0 998.0 191.0 2.0 34.0 997.0 1.0 1.0 598.0 119.0 0 0 0

MA1138.1_rc_shift6 (FOSL2::JUNB_rc)
; oligos_8nt_mkv5_m14 versus MA1138.1_rc (FOSL2::JUNB_rc); m=18/32; ncol2=10; w=10; offset=2; strand=R; shift=6; score=0.705741; ------rTGAsTCAym--- ; cor=; Ncor= a 0 0 0 0 0 0 602.0 0.0 0.0 973.0 85.0 0.0 14.0 999.0 13.0 277.0 0 0 0 c 0 0 0 0 0 0 112.0 0.0 0.0 26.0 292.0 0.0 985.0 0.0 314.0 407.0 0 0 0 g 0 0 0 0 0 0 251.0 0.0 831.0 0.0 568.0 0.0 0.0 0.0 53.0 164.0 0 0 0 t 0 0 0 0 0 0 35.0 999.0 168.0 1.0 54.0 999.0 0.0 0.0 621.0 151.0 0 0 0

MA1144.1_rc_shift6 (FOSL2::JUND_rc)
; oligos_8nt_mkv5_m14 versus MA1144.1_rc (FOSL2::JUND_rc); m=19/32; ncol2=10; w=10; offset=2; strand=R; shift=6; score=0.703983; ------rTGAsTCAym--- ; cor=; Ncor= a 0 0 0 0 0 0 583.0 0.0 0.0 934.0 58.0 0.0 10.0 999.0 14.0 275.0 0 0 0 c 0 0 0 0 0 0 113.0 0.0 0.0 60.0 292.0 0.0 990.0 0.0 291.0 446.0 0 0 0 g 0 0 0 0 0 0 266.0 0.0 860.0 0.0 604.0 1.0 0.0 0.0 60.0 143.0 0 0 0 t 0 0 0 0 0 0 38.0 999.0 140.0 6.0 46.0 998.0 0.0 0.0 634.0 137.0 0 0 0

MA1142.1_rc_shift6 (FOSL1::JUND_rc)
; oligos_8nt_mkv5_m14 versus MA1142.1_rc (FOSL1::JUND_rc); m=20/32; ncol2=10; w=10; offset=2; strand=R; shift=6; score=0.692836; ------aTkagTCAyy--- ; cor=; Ncor= a 0 0 0 0 0 0 470.0 31.0 64.0 669.0 180.0 41.0 140.0 913.0 40.0 235.0 0 0 0 c 0 0 0 0 0 0 144.0 17.0 25.0 187.0 191.0 82.0 777.0 34.0 282.0 279.0 0 0 0 g 0 0 0 0 0 0 212.0 40.0 641.0 45.0 581.0 12.0 61.0 23.0 127.0 221.0 0 0 0 t 0 0 0 0 0 0 174.0 912.0 270.0 98.0 49.0 864.0 22.0 30.0 551.0 265.0 0 0 0

MA1633.1_rc_shift3 (BACH1_rc)
; oligos_8nt_mkv5_m14 versus MA1633.1_rc (BACH1_rc); m=21/32; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.690097; ---wtGCTGAGTCAts--- ; cor=; Ncor= a 0 0 0 3938.0 2620.0 548.0 1545.0 275.0 240.0 14421.0 434.0 114.0 480.0 15036.0 947.0 3519.0 0 0 0 c 0 0 0 3553.0 1971.0 858.0 13050.0 310.0 178.0 266.0 2083.0 167.0 14831.0 149.0 3848.0 4835.0 0 0 0 g 0 0 0 3574.0 2167.0 13382.0 623.0 194.0 14563.0 220.0 12597.0 230.0 149.0 267.0 3833.0 3946.0 0 0 0 t 0 0 0 4492.0 8799.0 769.0 339.0 14778.0 576.0 650.0 443.0 15046.0 97.0 105.0 6929.0 3257.0 0 0 0

MA1132.1_rc_shift6 (JUN::JUNB_rc)
; oligos_8nt_mkv5_m14 versus MA1132.1_rc (JUN::JUNB_rc); m=22/32; ncol2=10; w=10; offset=2; strand=R; shift=6; score=0.674106; ------aTGmGTCAtm--- ; cor=; Ncor= a 0 0 0 0 0 0 500.0 27.0 122.0 565.0 33.0 18.0 47.0 946.0 50.0 261.0 0 0 0 c 0 0 0 0 0 0 64.0 18.0 10.0 353.0 115.0 28.0 921.0 34.0 189.0 408.0 0 0 0 g 0 0 0 0 0 0 248.0 24.0 707.0 24.0 826.0 10.0 21.0 10.0 134.0 128.0 0 0 0 t 0 0 0 0 0 0 188.0 931.0 161.0 58.0 27.0 944.0 10.0 11.0 627.0 203.0 0 0 0

MA0496.3_rc_shift2 (MAFK_rc)
; oligos_8nt_mkv5_m14 versus MA0496.3_rc (MAFK_rc); m=23/32; ncol2=15; w=13; offset=-2; strand=R; shift=2; score=0.673123; --wwkGCTGAGTCAkca-- ; cor=; Ncor= a 0 0 18619.0 14552.0 8204.0 2285.0 4361.0 1910.0 1087.0 46798.0 2544.0 1274.0 2565.0 47492.0 3939.0 9573.0 19030.0 0 0 c 0 0 8541.0 10512.0 4590.0 3327.0 44013.0 1267.0 957.0 1081.0 7573.0 1306.0 46695.0 1058.0 6706.0 21904.0 9969.0 0 0 g 0 0 9756.0 10737.0 14138.0 43458.0 1921.0 882.0 47872.0 1133.0 39125.0 1670.0 1366.0 1568.0 27000.0 10655.0 10789.0 0 0 t 0 0 14818.0 15933.0 24802.0 2664.0 1439.0 47675.0 1818.0 2722.0 2492.0 47484.0 1108.0 1616.0 14089.0 9602.0 11946.0 0 0

MA0591.1_rc_shift3 (Bach1::Mafk_rc)
; oligos_8nt_mkv5_m14 versus MA0591.1_rc (Bach1::Mafk_rc); m=24/32; ncol2=15; w=13; offset=-1; strand=R; shift=3; score=0.631155; ---sTGCTGAGTCAyssy- ; cor=; Ncor= a 0 0 0 22.0 6.0 0.0 0.0 2.0 0.0 109.0 0.0 1.0 7.0 111.0 0.0 4.0 18.0 14.0 0 c 0 0 0 38.0 6.0 0.0 113.0 3.0 2.0 4.0 20.0 0.0 107.0 0.0 32.0 54.0 46.0 41.0 0 g 0 0 0 42.0 4.0 114.0 1.0 1.0 107.0 0.0 94.0 0.0 0.0 1.0 16.0 41.0 36.0 14.0 0 t 0 0 0 12.0 98.0 0.0 0.0 108.0 5.0 1.0 0.0 113.0 0.0 2.0 66.0 15.0 14.0 45.0 0

MA0489.1_rc_shift6 (JUN(var.2)_rc)
; oligos_8nt_mkv5_m14 versus MA0489.1_rc (JUN(var.2)_rc); m=25/32; ncol2=14; w=11; offset=2; strand=R; shift=6; score=0.626947; ------aTGAsTCAyyyyy ; cor=; Ncor= a 0 0 0 0 0 0 5426.0 0.0 0.0 10757.0 780.0 3.0 0.0 10956.0 0.0 2004.0 1977.0 1773.0 1595.0 c 0 0 0 0 0 0 2645.0 0.0 0.0 0.0 4090.0 0.0 10956.0 0.0 4033.0 4213.0 3461.0 4330.0 4110.0 g 0 0 0 0 0 0 2509.0 0.0 10000.0 0.0 5704.0 0.0 0.0 0.0 993.0 593.0 1122.0 1127.0 1324.0 t 0 0 0 0 0 0 376.0 10956.0 956.0 199.0 382.0 10953.0 0.0 0.0 5930.0 4146.0 4396.0 3726.0 3927.0

MA0655.1_rc_shift6 (JDP2_rc)
; oligos_8nt_mkv5_m14 versus MA0655.1_rc (JDP2_rc); m=26/32; ncol2=9; w=9; offset=2; strand=R; shift=6; score=0.604321; ------ATGASTCAT---- ; cor=; Ncor= a 0 0 0 0 0 0 1634.0 7.0 9.0 1634.0 13.0 25.0 22.0 1634.0 8.0 0 0 0 0 c 0 0 0 0 0 0 5.0 0.0 3.0 6.0 434.0 2.0 1634.0 1.0 140.0 0 0 0 0 g 0 0 0 0 0 0 404.0 0.0 1634.0 0.0 1200.0 1.0 3.0 6.0 19.0 0 0 0 0 t 0 0 0 0 0 0 22.0 1634.0 22.0 6.0 14.0 1634.0 0.0 5.0 1634.0 0 0 0 0

MA0089.2_rc_shift2 (NFE2L1_rc)
; oligos_8nt_mkv5_m14 versus MA0089.2_rc (NFE2L1_rc); m=27/32; ncol2=16; w=13; offset=-2; strand=R; shift=2; score=0.596469; --wtTGCTGAGTCATkbt- ; cor=; Ncor= a 0 0 1682.0 783.0 293.0 26.0 263.0 98.0 97.0 3091.0 83.0 6.0 24.0 3337.0 11.0 769.0 482.0 738.0 0 c 0 0 305.0 694.0 142.0 33.0 3018.0 78.0 25.0 35.0 358.0 10.0 3308.0 2.0 706.0 742.0 1050.0 671.0 0 g 0 0 224.0 517.0 64.0 3281.0 18.0 9.0 3049.0 12.0 2864.0 4.0 7.0 5.0 57.0 853.0 946.0 703.0 0 t 0 0 1145.0 1362.0 2857.0 16.0 57.0 3171.0 185.0 218.0 51.0 3336.0 17.0 12.0 2582.0 992.0 878.0 1244.0 0

MA1101.2_rc_shift1 (BACH2_rc)
; oligos_8nt_mkv5_m14 versus MA1101.2_rc (BACH2_rc); m=28/32; ncol2=19; w=13; offset=-3; strand=R; shift=1; score=0.577241; -awabsATGAsTCATGstw ; cor=; Ncor= a 0 26118.0 39012.0 54749.0 11783.0 5274.0 63746.0 0.0 3.0 67975.0 18.0 6.0 54.0 68266.0 0.0 8116.0 13391.0 15405.0 24469.0 c 0 11268.0 8221.0 7650.0 19155.0 30498.0 2028.0 11.0 0.0 856.0 30785.0 13.0 68240.0 1.0 15304.0 6727.0 21257.0 8490.0 9605.0 g 0 15623.0 10703.0 13438.0 17682.0 35220.0 11634.0 2.0 68215.0 20.0 37438.0 1088.0 0.0 7.0 260.0 61580.0 21218.0 5534.0 8823.0 t 0 15261.0 23586.0 18457.0 19650.0 4522.0 47.0 68264.0 115.0 3.0 50.0 67846.0 6.0 1.0 62993.0 9369.0 12404.0 59307.0 38327.0

MA1114.1_shift4 (PBX3)
; oligos_8nt_mkv5_m14 versus MA1114.1 (PBX3); m=29/32; ncol2=17; w=13; offset=0; strand=D; shift=4; score=0.546632; ----gkbTGAGTGACAGgc ; cor=; Ncor= a 0 0 0 0 1595.0 1510.0 1320.0 596.0 228.0 6426.0 335.0 247.0 146.0 6164.0 150.0 6091.0 369.0 884.0 1251.0 c 0 0 0 0 1711.0 1724.0 1849.0 225.0 227.0 125.0 788.0 199.0 242.0 108.0 6524.0 129.0 412.0 1377.0 2654.0 g 0 0 0 0 2192.0 1934.0 1928.0 503.0 6406.0 214.0 4929.0 285.0 6550.0 604.0 209.0 425.0 5691.0 4077.0 1591.0 t 0 0 0 0 1523.0 1853.0 1924.0 5697.0 160.0 256.0 969.0 6290.0 83.0 145.0 138.0 376.0 549.0 683.0 1525.0

MA0782.2_shift5 (PKNOX1)
; oligos_8nt_mkv5_m14 versus MA0782.2 (PKNOX1); m=30/32; ncol2=15; w=12; offset=1; strand=D; shift=5; score= 0.5449; -----twTGAgTGACAGct ; cor=; Ncor= a 0 0 0 0 0 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 c 0 0 0 0 0 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 g 0 0 0 0 0 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 t 0 0 0 0 0 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0

MA0067.1_shift9 (Pax2)
; oligos_8nt_mkv5_m14 versus MA0067.1 (Pax2); m=31/32; ncol2=8; w=8; offset=5; strand=D; shift=9; score=0.494356; ---------wgTCAykb-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 10.0 7.0 3.0 0.0 26.0 2.0 2.0 1.0 0 0 c 0 0 0 0 0 0 0 0 0 7.0 1.0 2.0 28.0 1.0 17.0 0.0 11.0 0 0 g 0 0 0 0 0 0 0 0 0 5.0 21.0 0.0 1.0 3.0 1.0 19.0 11.0 0 0 t 0 0 0 0 0 0 0 0 0 9.0 2.0 26.0 2.0 1.0 11.0 10.0 8.0 0 0

MA0501.1_rc_shift0 (MAF::NFE2_rc)
; oligos_8nt_mkv5_m14 versus MA0501.1_rc (MAF::NFE2_rc); m=32/32; ncol2=15; w=11; offset=-4; strand=R; shift=0; score=0.475643; rwwyTGCTGAGTCAy---- ; cor=; Ncor= a 490.0 605.0 499.0 221.0 69.0 5.0 37.0 61.0 51.0 967.0 37.0 0.0 8.0 1090.0 4.0 0 0 0 0 c 106.0 91.0 130.0 283.0 73.0 22.0 1041.0 51.0 22.0 12.0 166.0 0.0 1082.0 0.0 334.0 0 0 0 0 g 283.0 102.0 100.0 203.0 17.0 1063.0 4.0 0.0 937.0 1.0 871.0 0.0 0.0 0.0 26.0 0 0 0 0 t 211.0 292.0 361.0 383.0 931.0 0.0 8.0 978.0 80.0 110.0 16.0 1090.0 0.0 0.0 726.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m25_shift3 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m25_shift3 (oligos_8nt_mkv5_m25oligos_8nt_mkv5_m25)
; oligos_8nt_mkv5_m25 (oligos_8nt_mkv5_m25oligos_8nt_mkv5_m25); m=0 (reference); ncol1=12; shift=3; ncol=19; ---gsATGAtTCAyc---- ; Alignment reference a 0 0 0 47 40 174 3 3 180 14 3 2 190 35 45 0 0 0 0 c 0 0 0 40 58 8 1 5 5 32 4 187 3 53 61 0 0 0 0 g 0 0 0 74 60 14 7 185 7 37 4 7 0 44 46 0 0 0 0 t 0 0 0 37 40 2 187 5 6 115 187 2 5 66 46 0 0 0 0

MA1134.1_rc_shift3 (FOS::JUNB_rc)
; oligos_8nt_mkv5_m25 versus MA1134.1_rc (FOS::JUNB_rc); m=1/33; ncol2=12; w=12; offset=0; strand=R; shift=3; score=0.914799; ---bkrTGAsTCAym---- ; cor=; Ncor= a 0 0 0 156.0 184.0 658.0 1.0 1.0 996.0 25.0 4.0 131.0 998.0 36.0 286.0 0 0 0 0 c 0 0 0 256.0 178.0 51.0 1.0 1.0 3.0 618.0 1.0 868.0 1.0 267.0 372.0 0 0 0 0 g 0 0 0 304.0 363.0 284.0 1.0 971.0 1.0 309.0 30.0 1.0 1.0 105.0 168.0 0 0 0 0 t 0 0 0 283.0 275.0 7.0 998.0 27.0 1.0 48.0 965.0 1.0 1.0 593.0 174.0 0 0 0 0

MA1130.1_shift3 (FOSL2::JUN)
; oligos_8nt_mkv5_m25 versus MA1130.1 (FOSL2::JUN); m=2/33; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.900129; ---kkrTGAGTCAym---- ; cor=; Ncor= a 0 0 0 189.0 214.0 542.0 1.0 1.0 847.0 103.0 1.0 20.0 998.0 19.0 269.0 0 0 0 0 c 0 0 0 248.0 179.0 121.0 1.0 1.0 123.0 141.0 1.0 979.0 0.0 299.0 341.0 0 0 0 0 g 0 0 0 295.0 338.0 282.0 1.0 840.0 1.0 698.0 1.0 1.0 1.0 93.0 180.0 0 0 0 0 t 0 0 0 268.0 269.0 55.0 998.0 158.0 29.0 58.0 998.0 1.0 1.0 589.0 209.0 0 0 0 0

MA0476.1_rc_shift4 (FOS_rc)
; oligos_8nt_mkv5_m25 versus MA0476.1_rc (FOS_rc); m=3/33; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.855819; ----vATGAsTCAbh---- ; cor=; Ncor= a 0 0 0 0 9257.0 21777.0 0.0 0.0 29396.0 3113.0 0.0 2288.0 29396.0 903.0 11119.0 0 0 0 0 c 0 0 0 0 7897.0 1538.0 0.0 0.0 0.0 11206.0 0.0 27108.0 0.0 10841.0 9686.0 0 0 0 0 g 0 0 0 0 8236.0 5823.0 0.0 29396.0 0.0 14079.0 0.0 0.0 0.0 10177.0 712.0 0 0 0 0 t 0 0 0 0 4006.0 258.0 29396.0 0.0 0.0 998.0 29396.0 0.0 0.0 7475.0 7879.0 0 0 0 0

MA0491.2_rc_shift3 (JUND_rc)
; oligos_8nt_mkv5_m25 versus MA0491.2_rc (JUND_rc); m=4/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.84899; ---ddATGAGTCAtyw--- ; cor=; Ncor= a 0 0 0 28704.0 27477.0 83216.0 809.0 1449.0 102249.0 4650.0 925.0 3920.0 104101.0 5020.0 25652.0 30507.0 0 0 0 c 0 0 0 19236.0 22249.0 7908.0 965.0 953.0 1147.0 20633.0 573.0 99787.0 443.0 20586.0 31347.0 25006.0 0 0 0 g 0 0 0 29793.0 28250.0 12025.0 751.0 98628.0 496.0 76028.0 650.0 873.0 757.0 10173.0 19712.0 21965.0 0 0 0 t 0 0 0 28212.0 27969.0 2796.0 103420.0 4915.0 2053.0 4634.0 103797.0 1365.0 644.0 70166.0 29234.0 28467.0 0 0 0

MA0477.2_rc_shift3 (FOSL1_rc)
; oligos_8nt_mkv5_m25 versus MA0477.2_rc (FOSL1_rc); m=5/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.842463; ---rdaTGAGTCAtyh--- ; cor=; Ncor= a 0 0 0 15023.0 15056.0 38033.0 363.0 559.0 55860.0 2591.0 302.0 2246.0 56778.0 2795.0 13887.0 15363.0 0 0 0 c 0 0 0 11065.0 12314.0 6533.0 566.0 278.0 598.0 8615.0 286.0 54619.0 183.0 13127.0 16855.0 14848.0 0 0 0 g 0 0 0 17637.0 15640.0 10399.0 344.0 53711.0 163.0 43918.0 287.0 301.0 460.0 6703.0 11018.0 12491.0 0 0 0 t 0 0 0 13956.0 14671.0 2716.0 56408.0 3133.0 1060.0 2557.0 56806.0 515.0 260.0 35056.0 15921.0 14979.0 0 0 0

MA0490.2_rc_shift3 (JUNB_rc)
; oligos_8nt_mkv5_m25 versus MA0490.2_rc (JUNB_rc); m=6/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.84009; ---dwATGAGTCAThw--- ; cor=; Ncor= a 0 0 0 22998.0 22591.0 59750.0 693.0 797.0 76655.0 4798.0 682.0 3779.0 78342.0 3866.0 20085.0 22351.0 0 0 0 c 0 0 0 15068.0 16491.0 7508.0 900.0 617.0 913.0 10519.0 550.0 74757.0 322.0 11566.0 20403.0 18150.0 0 0 0 g 0 0 0 20653.0 19230.0 8876.0 588.0 73199.0 289.0 59784.0 523.0 550.0 654.0 7817.0 15807.0 16583.0 0 0 0 t 0 0 0 21137.0 21544.0 3722.0 77675.0 5243.0 1999.0 4755.0 78101.0 770.0 538.0 56607.0 23561.0 22772.0 0 0 0

MA1137.1_rc_shift3 (FOSL1::JUNB_rc)
; oligos_8nt_mkv5_m25 versus MA1137.1_rc (FOSL1::JUNB_rc); m=7/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.826707; ---gkaTKAgTCAymr--- ; cor=; Ncor= a 0 0 0 230.0 198.0 552.0 37.0 37.0 803.0 113.0 42.0 63.0 945.0 47.0 263.0 300.0 0 0 0 c 0 0 0 223.0 204.0 170.0 38.0 9.0 115.0 198.0 21.0 880.0 16.0 287.0 376.0 195.0 0 0 0 g 0 0 0 300.0 298.0 225.0 21.0 683.0 23.0 626.0 20.0 21.0 16.0 100.0 146.0 269.0 0 0 0 t 0 0 0 247.0 300.0 53.0 904.0 271.0 59.0 63.0 917.0 36.0 23.0 566.0 216.0 237.0 0 0 0

MA0478.1_shift3 (FOSL2)
; oligos_8nt_mkv5_m25 versus MA0478.1 (FOSL2); m=8/33; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.825234; ---krrTGAsTCAb----- ; cor=; Ncor= a 0 0 0 833.0 1525.0 2861.0 0.0 0.0 5075.0 0.0 0.0 205.0 5318.0 0.0 0 0 0 0 0 c 0 0 0 994.0 592.0 55.0 0.0 0.0 51.0 3286.0 0.0 5113.0 0.0 1399.0 0 0 0 0 0 g 0 0 0 2086.0 2707.0 2328.0 0.0 5318.0 192.0 1838.0 0.0 0.0 0.0 1933.0 0 0 0 0 0 t 0 0 0 1405.0 494.0 74.0 5318.0 0.0 0.0 194.0 5318.0 0.0 0.0 1986.0 0 0 0 0 0

MA0841.1_shift4 (NFE2)
; oligos_8nt_mkv5_m25 versus MA0841.1 (NFE2); m=9/33; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.818998; ----vATGACTCATs---- ; cor=; Ncor= a 0 0 0 0 5589.0 18831.0 2.0 0.0 18831.0 37.0 0.0 1.0 18831.0 0.0 487.0 0 0 0 0 c 0 0 0 0 7208.0 9.0 8.0 0.0 11.0 14360.0 20.0 18831.0 13.0 2689.0 9860.0 0 0 0 0 g 0 0 0 0 5303.0 1306.0 0.0 18831.0 0.0 4472.0 3.0 0.0 8.0 10.0 5067.0 0 0 0 0 t 0 0 0 0 731.0 5.0 18831.0 2.0 4.0 17.0 18831.0 3.0 5.0 18831.0 3417.0 0 0 0 0

MA1128.1_shift3 (FOSL1::JUN)
; oligos_8nt_mkv5_m25 versus MA1128.1 (FOSL1::JUN); m=10/33; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.816953; ---kkrTGACTCAtmm--- ; cor=; Ncor= a 0 0 0 208.0 172.0 602.0 1.0 3.0 994.0 26.0 33.0 159.0 984.0 57.0 296.0 277.0 0 0 0 c 0 0 0 246.0 159.0 89.0 2.0 2.0 2.0 826.0 2.0 835.0 4.0 245.0 308.0 289.0 0 0 0 g 0 0 0 253.0 380.0 283.0 1.0 957.0 2.0 51.0 140.0 2.0 9.0 119.0 173.0 237.0 0 0 0 t 0 0 0 293.0 289.0 26.0 996.0 38.0 3.0 97.0 826.0 4.0 4.0 579.0 223.0 196.0 0 0 0

MA1141.1_rc_shift3 (FOS::JUND_rc)
; oligos_8nt_mkv5_m25 versus MA1141.1_rc (FOS::JUND_rc); m=11/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.816713; ---bkrTGACTCAymm--- ; cor=; Ncor= a 0 0 0 180.0 185.0 612.0 0.0 0.0 999.0 19.0 15.0 129.0 999.0 38.0 263.0 258.0 0 0 0 c 0 0 0 292.0 195.0 77.0 0.0 0.0 0.0 867.0 0.0 871.0 0.0 266.0 389.0 315.0 0 0 0 g 0 0 0 264.0 370.0 290.0 0.0 970.0 0.0 40.0 91.0 0.0 1.0 104.0 167.0 244.0 0 0 0 t 0 0 0 264.0 250.0 21.0 999.0 29.0 0.0 75.0 894.0 0.0 0.0 593.0 182.0 183.0 0 0 0

MA1634.1_rc_shift4 (BATF_rc)
; oligos_8nt_mkv5_m25 versus MA1634.1_rc (BATF_rc); m=12/33; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.808019; ----daTGAGTCAtw---- ; cor=; Ncor= a 0 0 0 0 12902.0 21615.0 754.0 1276.0 44736.0 2051.0 471.0 4682.0 45887.0 6875.0 16219.0 0 0 0 0 c 0 0 0 0 5919.0 9681.0 507.0 711.0 836.0 5573.0 341.0 40617.0 283.0 8627.0 11492.0 0 0 0 0 g 0 0 0 0 12048.0 7566.0 431.0 40279.0 306.0 37333.0 250.0 570.0 355.0 8931.0 5742.0 0 0 0 0 t 0 0 0 0 16139.0 8146.0 45316.0 4742.0 1130.0 2051.0 45946.0 1139.0 483.0 22575.0 13555.0 0 0 0 0

MA0462.2_rc_shift4 (BATF::JUN_rc)
; oligos_8nt_mkv5_m25 versus MA0462.2_rc (BATF::JUN_rc); m=13/33; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.805908; ----daTGAGTCAtw---- ; cor=; Ncor= a 0 0 0 0 10156.0 18005.0 558.0 907.0 36619.0 1399.0 320.0 3785.0 37330.0 5376.0 13310.0 0 0 0 0 c 0 0 0 0 4923.0 7745.0 424.0 522.0 539.0 4188.0 350.0 33135.0 182.0 6729.0 9317.0 0 0 0 0 g 0 0 0 0 9668.0 6105.0 318.0 32770.0 241.0 31168.0 204.0 400.0 275.0 7260.0 4762.0 0 0 0 0 t 0 0 0 0 13407.0 6299.0 36854.0 3955.0 755.0 1399.0 37280.0 834.0 367.0 18789.0 10765.0 0 0 0 0

MA0835.2_shift4 (BATF3)
; oligos_8nt_mkv5_m25 versus MA0835.2 (BATF3); m=14/33; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.792633; ----waTGACTCAtw---- ; cor=; Ncor= a 0 0 0 0 3609.0 6137.0 132.0 245.0 11670.0 408.0 267.0 1248.0 11529.0 2334.0 4521.0 0 0 0 0 c 0 0 0 0 1245.0 2106.0 59.0 62.0 92.0 10589.0 79.0 10347.0 84.0 1664.0 2733.0 0 0 0 0 g 0 0 0 0 2608.0 1831.0 37.0 10420.0 87.0 560.0 117.0 88.0 117.0 2249.0 1255.0 0 0 0 0 t 0 0 0 0 4503.0 1891.0 11737.0 1238.0 116.0 408.0 11502.0 282.0 235.0 5718.0 3456.0 0 0 0 0

MA1622.1_rc_shift3 (Smad2::Smad3_rc)
; oligos_8nt_mkv5_m25 versus MA1622.1_rc (Smad2::Smad3_rc); m=15/33; ncol2=14; w=12; offset=0; strand=R; shift=3; score=0.781903; ---kwaTGAGTCAymay-- ; cor=; Ncor= a 0 0 0 2480.0 2764.0 5636.0 125.0 101.0 9977.0 696.0 102.0 405.0 10151.0 794.0 2725.0 2998.0 2481.0 0 0 c 0 0 0 2524.0 2154.0 1979.0 79.0 90.0 68.0 1542.0 58.0 9768.0 56.0 2888.0 3479.0 2324.0 2615.0 0 0 g 0 0 0 2595.0 2479.0 2047.0 85.0 9443.0 53.0 7480.0 44.0 82.0 59.0 2212.0 1642.0 2515.0 2254.0 0 0 t 0 0 0 2746.0 2948.0 683.0 10056.0 711.0 247.0 627.0 10141.0 90.0 79.0 4451.0 2499.0 2508.0 2995.0 0 0

MA1138.1_shift4 (FOSL2::JUNB)
; oligos_8nt_mkv5_m25 versus MA1138.1 (FOSL2::JUNB); m=16/33; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.766223; ----krTGAsTCAy----- ; cor=; Ncor= a 0 0 0 0 151.0 621.0 0.0 0.0 999.0 54.0 1.0 168.0 999.0 35.0 0 0 0 0 0 c 0 0 0 0 164.0 53.0 0.0 0.0 0.0 568.0 0.0 831.0 0.0 251.0 0 0 0 0 0 g 0 0 0 0 407.0 314.0 0.0 985.0 0.0 292.0 26.0 0.0 0.0 112.0 0 0 0 0 0 t 0 0 0 0 277.0 13.0 999.0 14.0 0.0 85.0 973.0 0.0 0.0 602.0 0 0 0 0 0

MA1144.1_shift4 (FOSL2::JUND)
; oligos_8nt_mkv5_m25 versus MA1144.1 (FOSL2::JUND); m=17/33; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.763431; ----krTGAsTCAy----- ; cor=; Ncor= a 0 0 0 0 137.0 634.0 0.0 0.0 998.0 46.0 6.0 140.0 999.0 38.0 0 0 0 0 0 c 0 0 0 0 143.0 60.0 0.0 0.0 1.0 604.0 0.0 860.0 0.0 266.0 0 0 0 0 0 g 0 0 0 0 446.0 291.0 0.0 990.0 0.0 292.0 60.0 0.0 0.0 113.0 0 0 0 0 0 t 0 0 0 0 275.0 14.0 999.0 10.0 0.0 58.0 934.0 0.0 0.0 583.0 0 0 0 0 0

MA1135.1_shift4 (FOSB::JUNB)
; oligos_8nt_mkv5_m25 versus MA1135.1 (FOSB::JUNB); m=18/33; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.759337; ----krTGAsTCAy----- ; cor=; Ncor= a 0 0 0 0 119.0 598.0 1.0 1.0 997.0 34.0 2.0 191.0 998.0 37.0 0 0 0 0 0 c 0 0 0 0 182.0 61.0 0.0 0.0 1.0 596.0 1.0 808.0 0.0 259.0 0 0 0 0 0 g 0 0 0 0 429.0 321.0 1.0 980.0 1.0 309.0 39.0 1.0 1.0 126.0 0 0 0 0 0 t 0 0 0 0 270.0 20.0 998.0 19.0 1.0 61.0 958.0 1.0 1.0 578.0 0 0 0 0 0

MA0099.3_shift5 (FOS::JUN)
; oligos_8nt_mkv5_m25 versus MA0099.3 (FOS::JUN); m=19/33; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.755836; -----rTGAGTCAym---- ; cor=; Ncor= a 0 0 0 0 0 592.0 3.0 7.0 820.0 78.0 5.0 30.0 992.0 24.0 277.0 0 0 0 0 c 0 0 0 0 0 111.0 5.0 1.0 131.0 180.0 2.0 963.0 2.0 313.0 397.0 0 0 0 0 g 0 0 0 0 0 257.0 2.0 824.0 4.0 688.0 2.0 3.0 2.0 95.0 164.0 0 0 0 0 t 0 0 0 0 0 40.0 990.0 168.0 45.0 54.0 991.0 4.0 4.0 568.0 162.0 0 0 0 0

MA1142.1_shift4 (FOSL1::JUND)
; oligos_8nt_mkv5_m25 versus MA1142.1 (FOSL1::JUND); m=20/33; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.75467; ----rrTGActmAt----- ; cor=; Ncor= a 0 0 0 0 265.0 551.0 30.0 22.0 864.0 49.0 98.0 270.0 912.0 174.0 0 0 0 0 0 c 0 0 0 0 221.0 127.0 23.0 61.0 12.0 581.0 45.0 641.0 40.0 212.0 0 0 0 0 0 g 0 0 0 0 279.0 282.0 34.0 777.0 82.0 191.0 187.0 25.0 17.0 144.0 0 0 0 0 0 t 0 0 0 0 235.0 40.0 913.0 140.0 41.0 180.0 669.0 64.0 31.0 470.0 0 0 0 0 0

MA1132.1_shift4 (JUN::JUNB)
; oligos_8nt_mkv5_m25 versus MA1132.1 (JUN::JUNB); m=21/33; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.707175; ----kaTGACkCAt----- ; cor=; Ncor= a 0 0 0 0 203.0 627.0 11.0 10.0 944.0 27.0 58.0 161.0 931.0 188.0 0 0 0 0 0 c 0 0 0 0 128.0 134.0 10.0 21.0 10.0 826.0 24.0 707.0 24.0 248.0 0 0 0 0 0 g 0 0 0 0 408.0 189.0 34.0 921.0 28.0 115.0 353.0 10.0 18.0 64.0 0 0 0 0 0 t 0 0 0 0 261.0 50.0 946.0 47.0 18.0 33.0 565.0 122.0 27.0 500.0 0 0 0 0 0

MA1633.1_rc_shift2 (BACH1_rc)
; oligos_8nt_mkv5_m25 versus MA1633.1_rc (BACH1_rc); m=22/33; ncol2=13; w=12; offset=-1; strand=R; shift=2; score=0.687722; --wtGCTGAGTCAts---- ; cor=; Ncor= a 0 0 3938.0 2620.0 548.0 1545.0 275.0 240.0 14421.0 434.0 114.0 480.0 15036.0 947.0 3519.0 0 0 0 0 c 0 0 3553.0 1971.0 858.0 13050.0 310.0 178.0 266.0 2083.0 167.0 14831.0 149.0 3848.0 4835.0 0 0 0 0 g 0 0 3574.0 2167.0 13382.0 623.0 194.0 14563.0 220.0 12597.0 230.0 149.0 267.0 3833.0 3946.0 0 0 0 0 t 0 0 4492.0 8799.0 769.0 339.0 14778.0 576.0 650.0 443.0 15046.0 97.0 105.0 6929.0 3257.0 0 0 0 0

MA0655.1_shift5 (JDP2)
; oligos_8nt_mkv5_m25 versus MA0655.1 (JDP2); m=23/33; ncol2=9; w=9; offset=2; strand=D; shift=5; score=0.68355; -----ATGASTCAT----- ; cor=; Ncor= a 0 0 0 0 0 1634.0 5.0 0.0 1634.0 14.0 6.0 22.0 1634.0 22.0 0 0 0 0 0 c 0 0 0 0 0 19.0 6.0 3.0 1.0 1200.0 0.0 1634.0 0.0 404.0 0 0 0 0 0 g 0 0 0 0 0 140.0 1.0 1634.0 2.0 434.0 6.0 3.0 0.0 5.0 0 0 0 0 0 t 0 0 0 0 0 8.0 1634.0 22.0 25.0 13.0 1634.0 9.0 7.0 1634.0 0 0 0 0 0

MA0489.1_shift0 (JUN(var.2))
; oligos_8nt_mkv5_m25 versus MA0489.1 (JUN(var.2)); m=24/33; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.667893; rrrrrrTGAsTCAt----- ; cor=; Ncor= a 4852.0 3927.0 3726.0 4396.0 4146.0 5930.0 0.0 0.0 10953.0 382.0 199.0 956.0 10956.0 376.0 0 0 0 0 0 c 1250.0 1324.0 1127.0 1122.0 593.0 993.0 0.0 0.0 0.0 5704.0 0.0 10000.0 0.0 2509.0 0 0 0 0 0 g 2818.0 4110.0 4330.0 3461.0 4213.0 4033.0 0.0 10956.0 0.0 4090.0 0.0 0.0 0.0 2645.0 0 0 0 0 0 t 2036.0 1595.0 1773.0 1977.0 2004.0 0.0 10956.0 0.0 3.0 780.0 10757.0 0.0 0.0 5426.0 0 0 0 0 0

MA1639.1_shift2 (MEIS1(var.2))
; oligos_8nt_mkv5_m25 versus MA1639.1 (MEIS1(var.2)); m=25/33; ncol2=13; w=12; offset=-1; strand=D; shift=2; score=0.660853; --rhcATmAATCAww---- ; cor=; Ncor= a 0 0 1824.0 1864.0 970.0 6383.0 80.0 2295.0 6063.0 6112.0 127.0 156.0 5433.0 1735.0 1872.0 0 0 0 0 c 0 0 1425.0 1979.0 4571.0 61.0 69.0 3580.0 336.0 214.0 87.0 6367.0 279.0 1504.0 1542.0 0 0 0 0 g 0 0 1902.0 762.0 183.0 218.0 83.0 252.0 33.0 192.0 63.0 61.0 152.0 934.0 1261.0 0 0 0 0 t 0 0 1585.0 2131.0 1012.0 74.0 6504.0 609.0 304.0 218.0 6459.0 152.0 872.0 2563.0 2061.0 0 0 0 0

MA0150.2_shift1 (Nfe2l2)
; oligos_8nt_mkv5_m25 versus MA0150.2 (Nfe2l2); m=26/33; ncol2=15; w=12; offset=-2; strand=D; shift=1; score=0.628922; -casmrTGACTCAGCA--- ; cor=; Ncor= a 0 166.0 401.0 118.0 203.0 488.0 0.0 0.0 726.0 20.0 84.0 65.0 577.0 10.0 4.0 623.0 0 0 0 c 0 338.0 78.0 239.0 247.0 28.0 0.0 0.0 0.0 533.0 20.0 549.0 3.0 11.0 699.0 26.0 0 0 0 g 0 109.0 159.0 275.0 152.0 205.0 0.0 711.0 0.0 118.0 16.0 46.0 90.0 698.0 19.0 31.0 0 0 0 t 0 113.0 88.0 94.0 124.0 5.0 726.0 15.0 0.0 55.0 606.0 66.0 56.0 7.0 4.0 46.0 0 0 0

MA0591.1_shift2 (Bach1::Mafk)
; oligos_8nt_mkv5_m25 versus MA0591.1 (Bach1::Mafk); m=27/33; ncol2=15; w=12; offset=-1; strand=D; shift=2; score=0.625915; --rssrTGACTCAGCAs-- ; cor=; Ncor= a 0 0 45.0 14.0 15.0 66.0 2.0 0.0 113.0 0.0 1.0 5.0 108.0 0.0 0.0 98.0 12.0 0 0 c 0 0 14.0 36.0 41.0 16.0 1.0 0.0 0.0 94.0 0.0 107.0 1.0 1.0 114.0 4.0 42.0 0 0 g 0 0 41.0 46.0 54.0 32.0 0.0 107.0 0.0 20.0 4.0 2.0 3.0 113.0 0.0 6.0 38.0 0 0 t 0 0 14.0 18.0 4.0 0.0 111.0 7.0 1.0 0.0 109.0 0.0 2.0 0.0 0.0 6.0 22.0 0 0

MA0496.3_shift3 (MAFK)
; oligos_8nt_mkv5_m25 versus MA0496.3 (MAFK); m=28/33; ncol2=15; w=12; offset=0; strand=D; shift=3; score=0.611941; ---tgmTGACTCAGCmww- ; cor=; Ncor= a 0 0 0 11946.0 9602.0 14089.0 1616.0 1108.0 47484.0 2492.0 2722.0 1818.0 47675.0 1439.0 2664.0 24802.0 15933.0 14818.0 0 c 0 0 0 10789.0 10655.0 27000.0 1568.0 1366.0 1670.0 39125.0 1133.0 47872.0 882.0 1921.0 43458.0 14138.0 10737.0 9756.0 0 g 0 0 0 9969.0 21904.0 6706.0 1058.0 46695.0 1306.0 7573.0 1081.0 957.0 1267.0 44013.0 3327.0 4590.0 10512.0 8541.0 0 t 0 0 0 19030.0 9573.0 3939.0 47492.0 2565.0 1274.0 2544.0 46798.0 1087.0 1910.0 4361.0 2285.0 8204.0 14552.0 18619.0 0

MA0089.2_shift2 (NFE2L1)
; oligos_8nt_mkv5_m25 versus MA0089.2 (NFE2L1); m=29/33; ncol2=16; w=12; offset=-1; strand=D; shift=2; score=0.610449; --avmATGACTCAGCAaw- ; cor=; Ncor= a 0 0 1244.0 878.0 992.0 2582.0 12.0 17.0 3336.0 51.0 218.0 185.0 3171.0 57.0 16.0 2857.0 1362.0 1145.0 0 c 0 0 703.0 946.0 853.0 57.0 5.0 7.0 4.0 2864.0 12.0 3049.0 9.0 18.0 3281.0 64.0 517.0 224.0 0 g 0 0 671.0 1050.0 742.0 706.0 2.0 3308.0 10.0 358.0 35.0 25.0 78.0 3018.0 33.0 142.0 694.0 305.0 0 t 0 0 738.0 482.0 769.0 11.0 3337.0 24.0 6.0 83.0 3091.0 97.0 98.0 263.0 26.0 293.0 783.0 1682.0 0

MA1640.1_shift3 (MEIS2(var.2))
; oligos_8nt_mkv5_m25 versus MA1640.1 (MEIS2(var.2)); m=30/33; ncol2=15; w=12; offset=0; strand=D; shift=3; score=0.568358; ---raaTGATTTATgryy- ; cor=; Ncor= a 0 0 0 6212.0 6445.0 9929.0 3885.0 1478.0 19361.0 576.0 712.0 1623.0 19344.0 474.0 2623.0 5762.0 3882.0 4556.0 0 c 0 0 0 3311.0 4041.0 2365.0 468.0 302.0 207.0 268.0 201.0 582.0 177.0 1053.0 1089.0 1609.0 6518.0 5248.0 0 g 0 0 0 5768.0 4683.0 3896.0 1400.0 17326.0 224.0 499.0 278.0 1801.0 495.0 502.0 12862.0 8199.0 4176.0 3361.0 0 t 0 0 0 4882.0 5004.0 3983.0 14420.0 1067.0 381.0 18830.0 18982.0 16167.0 157.0 18144.0 3599.0 4603.0 5597.0 7008.0 0

MA1101.2_shift0 (BACH2)
; oligos_8nt_mkv5_m25 versus MA1101.2 (BACH2); m=31/33; ncol2=19; w=12; offset=-3; strand=D; shift=0; score=0.558541; awasCATGAsTCATsvtwt ; cor=; Ncor= a 26746.0 38327.0 59307.0 12404.0 9369.0 62993.0 1.0 6.0 67846.0 50.0 3.0 115.0 68264.0 47.0 4522.0 19650.0 18457.0 23586.0 15261.0 c 12203.0 8823.0 5534.0 21218.0 61580.0 260.0 7.0 0.0 1088.0 37438.0 20.0 68215.0 2.0 11634.0 35220.0 17682.0 13438.0 10703.0 15623.0 g 13720.0 9605.0 8490.0 21257.0 6727.0 15304.0 1.0 68240.0 13.0 30785.0 856.0 0.0 11.0 2028.0 30498.0 19155.0 7650.0 8221.0 11268.0 t 15601.0 24469.0 15405.0 13391.0 8116.0 0.0 68266.0 54.0 6.0 18.0 67975.0 3.0 0.0 63746.0 5274.0 11783.0 54749.0 39012.0 26118.0

MA1113.2_rc_shift4 (PBX2_rc)
; oligos_8nt_mkv5_m25 versus MA1113.2_rc (PBX2_rc); m=32/33; ncol2=13; w=11; offset=1; strand=R; shift=4; score=0.551704; ----waTGATTTATgdy-- ; cor=; Ncor= a 0 0 0 0 9039.0 11594.0 2451.0 2849.0 28112.0 1014.0 1434.0 2145.0 28466.0 637.0 3441.0 9383.0 5745.0 0 0 c 0 0 0 0 5574.0 3952.0 352.0 555.0 327.0 569.0 343.0 817.0 317.0 1710.0 1585.0 3047.0 9625.0 0 0 g 0 0 0 0 7086.0 7057.0 848.0 23894.0 453.0 754.0 574.0 2266.0 588.0 629.0 19645.0 8859.0 5863.0 0 0 t 0 0 0 0 7897.0 6993.0 25945.0 2298.0 704.0 27259.0 27245.0 24368.0 225.0 26620.0 4925.0 8307.0 8363.0 0 0

MA0501.1_shift5 (MAF::NFE2)
; oligos_8nt_mkv5_m25 versus MA0501.1 (MAF::NFE2); m=33/33; ncol2=15; w=10; offset=2; strand=D; shift=5; score=0.469284; -----rTGACTCAGCArww ; cor=; Ncor= a 0 0 0 0 0 726.0 0.0 0.0 1090.0 16.0 110.0 80.0 978.0 8.0 0.0 931.0 383.0 361.0 292.0 c 0 0 0 0 0 26.0 0.0 0.0 0.0 871.0 1.0 937.0 0.0 4.0 1063.0 17.0 203.0 100.0 102.0 g 0 0 0 0 0 334.0 0.0 1082.0 0.0 166.0 12.0 22.0 51.0 1041.0 22.0 73.0 283.0 130.0 91.0 t 0 0 0 0 0 4.0 1090.0 8.0 0.0 37.0 967.0 51.0 61.0 37.0 5.0 69.0 221.0 499.0 605.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m8_shift3 ; 18 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m8_shift3 (oligos_6nt_mkv3_m8oligos_6nt_mkv3_m8)
; oligos_6nt_mkv3_m8 (oligos_6nt_mkv3_m8oligos_6nt_mkv3_m8); m=0 (reference); ncol1=13; shift=3; ncol=17; ---csCCCCTCCCCss- ; Alignment reference a 0 0 0 94 114 19 7 4 13 30 8 1 4 31 114 91 0 c 0 0 0 274 216 525 598 626 619 46 628 636 625 550 260 241 0 g 0 0 0 146 178 59 17 10 6 78 5 8 13 13 171 179 0 t 0 0 0 135 141 46 27 9 11 495 8 4 7 55 104 138 0

MA1653.1_shift3 (ZNF148)
; oligos_6nt_mkv3_m8 versus MA1653.1 (ZNF148); m=1/17; ncol2=12; w=12; offset=0; strand=D; shift=3; score= 0.9017; ---ysCCCCTCCCcc-- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0

MA1522.1_shift3 (MAZ)
; oligos_6nt_mkv3_m8 versus MA1522.1 (MAZ); m=2/17; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.805041; ---ssCCCCTCCcc--- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0

MA0039.4_shift3 (KLF4)
; oligos_6nt_mkv3_m8 versus MA0039.4 (KLF4); m=3/17; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.779013; ---ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0

MA0753.2_shift3 (ZNF740)
; oligos_6nt_mkv3_m8 versus MA0753.2 (ZNF740); m=4/17; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.763959; ---cyrCCCCCCCCAc- ; cor=; Ncor= a 0 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 c 0 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 g 0 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 t 0 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0

MA0528.2_rc_shift4 (ZNF263_rc)
; oligos_6nt_mkv3_m8 versus MA0528.2_rc (ZNF263_rc); m=5/17; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.737896; ----csTCCTCCCcsc- ; cor=; Ncor= a 0 0 0 0 11103.0 6566.0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 8247.0 12535.0 9733.0 0 c 0 0 0 0 25115.0 24825.0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 28912.0 17883.0 20283.0 0 g 0 0 0 0 11689.0 15413.0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 6183.0 14909.0 13040.0 0 t 0 0 0 0 8436.0 9539.0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 13001.0 11016.0 13287.0 0

MA0746.2_shift3 (SP3)
; oligos_6nt_mkv3_m8 versus MA0746.2 (SP3); m=6/17; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.720002; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0

MA1513.1_shift4 (KLF15)
; oligos_6nt_mkv3_m8 versus MA1513.1 (KLF15); m=7/17; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.717458; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0

MA0599.1_shift4 (KLF5)
; oligos_6nt_mkv3_m8 versus MA0599.1 (KLF5); m=8/17; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.691599; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA1564.1_shift4 (SP9)
; oligos_6nt_mkv3_m8 versus MA1564.1 (SP9); m=9/17; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.689695; ----rcCmCGCCCmcy- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0

MA0741.1_shift4 (KLF16)
; oligos_6nt_mkv3_m8 versus MA0741.1 (KLF16); m=10/17; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.669088; ----gmCMCgCCCMC-- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0

MA0747.1_shift4 (SP8)
; oligos_6nt_mkv3_m8 versus MA0747.1 (SP8); m=11/17; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.664588; ----rmCACgCCCmCy- ; cor=; Ncor= a 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 c 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 g 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 t 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0

MA1515.1_shift3 (KLF2)
; oligos_6nt_mkv3_m8 versus MA1515.1 (KLF2); m=12/17; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.641045; ---srCCmCrCCCw--- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0

MA0516.2_shift0 (SP2)
; oligos_6nt_mkv3_m8 versus MA0516.2 (SP2); m=13/17; ncol2=17; w=13; offset=-3; strand=D; shift=0; score=0.571712; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0

MA1578.1_shift6 (VEZF1)
; oligos_6nt_mkv3_m8 versus MA1578.1 (VEZF1); m=14/17; ncol2=10; w=10; offset=3; strand=D; shift=6; score=0.570369; ------CCCCCCmytw- ; cor=; Ncor= a 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 c 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 g 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 t 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0

MA1627.1_shift5 (Wt1)
; oligos_6nt_mkv3_m8 versus MA1627.1 (Wt1); m=15/17; ncol2=14; w=11; offset=2; strand=D; shift=5; score=0.565725; -----cycCTCCCCCAC ; cor=; Ncor= a 0 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 c 0 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 g 0 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 t 0 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0

MA0057.1_rc_shift2 (MZF1(var.2)_rc)
; oligos_6nt_mkv3_m8 versus MA0057.1_rc (MZF1(var.2)_rc); m=16/17; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.519328; --yymCCCMTmv----- ; cor=; Ncor= a 0 0 2.0 2.0 4.0 2.0 0.0 1.0 5.0 0.0 7.0 4.0 0 0 0 0 0 c 0 0 4.0 4.0 8.0 14.0 14.0 15.0 11.0 0.0 7.0 7.0 0 0 0 0 0 g 0 0 2.0 0.0 1.0 0.0 2.0 0.0 0.0 1.0 0.0 4.0 0 0 0 0 0 t 0 0 8.0 10.0 3.0 0.0 0.0 0.0 0.0 15.0 2.0 1.0 0 0 0 0 0

MA1630.1_rc_shift7 (Znf281_rc)
; oligos_6nt_mkv3_m8 versus MA1630.1_rc (Znf281_rc); m=17/17; ncol2=11; w=9; offset=4; strand=R; shift=7; score=0.507508; -------CcTCCCCCAc ; cor=; Ncor= a 0 0 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 c 0 0 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 g 0 0 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 t 0 0 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0

One-to-n matrix alignment; reference matrix: local_words_7nt_m22_shift4 ; 45 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m22_shift4 (local_words_7nt_m22local_words_7nt_m22)
; local_words_7nt_m22 (local_words_7nt_m22local_words_7nt_m22); m=0 (reference); ncol1=12; shift=4; ncol=16; ----srACAGGTGCmg ; Alignment reference a 0 0 0 0 61 119 273 1 358 2 5 0 0 5 102 86 c 0 0 0 0 111 62 21 358 2 10 13 2 3 336 92 90 g 0 0 0 0 112 164 57 3 2 350 343 0 356 6 78 141 t 0 0 0 0 78 17 11 0 0 0 1 360 3 15 90 45

MA0499.2_rc_shift3 (MYOD1_rc)
; local_words_7nt_m22 versus MA0499.2_rc (MYOD1_rc); m=1/44; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.900567; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0

MA0745.2_rc_shift3 (SNAI2_rc)
; local_words_7nt_m22 versus MA0745.2_rc (SNAI2_rc); m=2/44; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.892939; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; local_words_7nt_m22 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=3/44; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.874493; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0

MA0830.2_rc_shift3 (TCF4_rc)
; local_words_7nt_m22 versus MA0830.2_rc (TCF4_rc); m=4/44; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.847174; ---ssggCAGGTGccg ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0

MA1631.1_rc_shift3 (ASCL1(var.2)_rc)
; local_words_7nt_m22 versus MA1631.1_rc (ASCL1(var.2)_rc); m=5/44; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.815105; ---gsrGCAGGTGchg ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0

MA0103.3_rc_shift4 (ZEB1_rc)
; local_words_7nt_m22 versus MA0103.3_rc (ZEB1_rc); m=6/44; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.801527; ----sssCAGGTGss- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0

MA1559.1_shift5 (SNAI3)
; local_words_7nt_m22 versus MA1559.1 (SNAI3); m=7/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.789006; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0

MA0521.1_shift5 (Tcf12)
; local_words_7nt_m22 versus MA0521.1 (Tcf12); m=8/44; ncol2=11; w=11; offset=1; strand=D; shift=5; score=0.762815; -----rRCAGCTGswg ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0

MA1558.1_shift5 (SNAI1)
; local_words_7nt_m22 versus MA1558.1 (SNAI1); m=9/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.760919; -----drCAGGTGyr- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0

MA1621.1_rc_shift3 (Rbpjl_rc)
; local_words_7nt_m22 versus MA1621.1_rc (Rbpjl_rc); m=10/44; ncol2=14; w=12; offset=-1; strand=R; shift=3; score=0.759252; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0

MA1648.1_rc_shift4 (TCF12(var.2)_rc)
; local_words_7nt_m22 versus MA1648.1_rc (TCF12(var.2)_rc); m=11/44; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.754895; ----srGCAGGTGss- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0

MA0522.3_rc_shift4 (TCF3_rc)
; local_words_7nt_m22 versus MA0522.3_rc (TCF3_rc); m=12/44; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.749654; ----ssGCAGGTGbs- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0

MA0500.2_rc_shift4 (MYOG_rc)
; local_words_7nt_m22 versus MA0500.2_rc (MYOG_rc); m=13/44; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.749509; ----sarCAGCTGyts ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0

MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)
; local_words_7nt_m22 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=14/44; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.726644; ----rmaCAGCTGtky ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0

MA1641.1_shift4 (MYF5)
; local_words_7nt_m22 versus MA1641.1 (MYF5); m=15/44; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.718587; ----gvaCAGCTGtbc ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0

MA0820.1_rc_shift5 (FIGLA_rc)
; local_words_7nt_m22 versus MA0820.1_rc (FIGLA_rc); m=16/44; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.708913; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0

MA0821.1_shift4 (HES5)
; local_words_7nt_m22 versus MA0821.1 (HES5); m=17/44; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.706875; ----yGrCACGTGCCr ; cor=; Ncor= a 0 0 0 0 216.0 47.0 764.0 0.0 1559.0 1.0 1.0 0.0 0.0 0.0 0.0 651.0 c 0 0 0 0 779.0 6.0 63.0 1559.0 0.0 1559.0 0.0 7.0 0.0 1559.0 1559.0 153.0 g 0 0 0 0 30.0 1559.0 1559.0 0.0 1.0 0.0 1559.0 0.0 1559.0 14.0 1.0 475.0 t 0 0 0 0 535.0 1.0 0.0 0.0 0.0 1.0 0.0 1559.0 0.0 267.0 14.0 279.0

MA0147.3_shift4 (MYC)
; local_words_7nt_m22 versus MA0147.3 (MYC); m=18/44; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.702138; ----ssCCACGTGcys ; cor=; Ncor= a 0 0 0 0 1038.0 1019.0 438.0 44.0 4600.0 54.0 169.0 59.0 23.0 419.0 961.0 755.0 c 0 0 0 0 1345.0 1287.0 3746.0 4840.0 59.0 4525.0 157.0 162.0 56.0 2801.0 1524.0 1785.0 g 0 0 0 0 1649.0 1757.0 472.0 31.0 170.0 70.0 4578.0 63.0 4817.0 1198.0 1036.0 1348.0 t 0 0 0 0 910.0 879.0 286.0 27.0 113.0 293.0 38.0 4658.0 46.0 524.0 1421.0 1054.0

MA1100.2_shift5 (ASCL1)
; local_words_7nt_m22 versus MA1100.2 (ASCL1); m=19/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.678987; -----rrCAGCTGcy- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0

MA1618.1_shift4 (Ptf1a)
; local_words_7nt_m22 versus MA1618.1 (Ptf1a); m=20/44; ncol2=13; w=12; offset=0; strand=D; shift=4; score=0.656674; ----dmaCAGATGttk ; cor=; Ncor= a 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 c 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 g 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 t 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0

MA1493.1_rc_shift5 (HES6_rc)
; local_words_7nt_m22 versus MA1493.1_rc (HES6_rc); m=21/44; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.654748; -----rACACGTGCC- ; cor=; Ncor= a 0 0 0 0 0 209.0 439.0 0.0 439.0 0.0 16.0 11.0 15.0 13.0 43.0 0 c 0 0 0 0 0 0.0 0.0 439.0 29.0 439.0 9.0 9.0 19.0 439.0 439.0 0 g 0 0 0 0 0 152.0 21.0 0.0 7.0 12.0 439.0 0.0 439.0 35.0 39.0 0 t 0 0 0 0 0 79.0 33.0 0.0 0.0 10.0 2.0 439.0 17.0 16.0 12.0 0

MA0626.1_rc_shift5 (Npas2_rc)
; local_words_7nt_m22 versus MA0626.1_rc (Npas2_rc); m=22/44; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.635625; -----kaCACGTGsh- ; cor=; Ncor= a 0 0 0 0 0 202.0 566.0 0.0 999.0 0.0 0.0 0.0 0.0 48.0 257.0 0 c 0 0 0 0 0 202.0 188.0 918.0 0.0 918.0 0.0 0.0 0.0 420.0 293.0 0 g 0 0 0 0 0 299.0 172.0 0.0 0.0 0.0 918.0 0.0 999.0 377.0 177.0 0 t 0 0 0 0 0 297.0 74.0 81.0 0.0 81.0 81.0 999.0 0.0 154.0 273.0 0

MA0816.1_shift5 (Ascl2)
; local_words_7nt_m22 versus MA0816.1 (Ascl2); m=23/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.624259; -----arCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 c 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 g 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 t 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0

MA0048.2_rc_shift5 (NHLH1_rc)
; local_words_7nt_m22 versus MA0048.2_rc (NHLH1_rc); m=24/44; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.621893; -----mGCAGCTGCg- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0

MA0823.1_shift5 (HEY1)
; local_words_7nt_m22 versus MA0823.1 (HEY1); m=25/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.618832; -----grCACGTGyc- ; cor=; Ncor= a 0 0 0 0 0 437.0 1373.0 1.0 3338.0 0.0 0.0 0.0 32.0 333.0 475.0 0 c 0 0 0 0 0 761.0 656.0 3338.0 30.0 3338.0 18.0 474.0 19.0 1762.0 2172.0 0 g 0 0 0 0 0 1788.0 1199.0 3.0 123.0 0.0 3338.0 10.0 3338.0 380.0 373.0 0 t 0 0 0 0 0 352.0 110.0 15.0 21.0 0.0 0.0 3338.0 22.0 863.0 318.0 0

MA1472.1_shift5 (BHLHA15(var.2))
; local_words_7nt_m22 versus MA1472.1 (BHLHA15(var.2)); m=26/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.617429; -----avCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0

MA0825.1_shift5 (MNT)
; local_words_7nt_m22 versus MA0825.1 (MNT); m=27/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.610284; -----avCACGTGcy- ; cor=; Ncor= a 0 0 0 0 0 279.0 187.0 27.0 681.0 0.0 15.0 0.0 0.0 150.0 159.0 0 c 0 0 0 0 0 128.0 228.0 681.0 0.0 681.0 0.0 0.0 0.0 281.0 229.0 0 g 0 0 0 0 0 145.0 203.0 0.0 0.0 7.0 681.0 15.0 681.0 131.0 75.0 0 t 0 0 0 0 0 129.0 63.0 5.0 21.0 16.0 0.0 681.0 25.0 120.0 219.0 0

MA0649.1_shift5 (HEY2)
; local_words_7nt_m22 versus MA0649.1 (HEY2); m=28/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.606565; -----GrCACGTGyc- ; cor=; Ncor= a 0 0 0 0 0 107.0 651.0 84.0 1800.0 7.0 27.0 36.0 0.0 50.0 285.0 0 c 0 0 0 0 0 99.0 305.0 1800.0 0.0 1800.0 72.0 120.0 34.0 1047.0 869.0 0 g 0 0 0 0 0 1800.0 620.0 83.0 128.0 0.0 1800.0 0.0 1800.0 128.0 382.0 0 t 0 0 0 0 0 101.0 224.0 58.0 0.0 0.0 0.0 1800.0 30.0 753.0 264.0 0

MA1635.1_shift5 (BHLHE22(var.2))
; local_words_7nt_m22 versus MA1635.1 (BHLHE22(var.2)); m=29/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.606436; -----csCAGCTGsg- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 c 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 g 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 t 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0

MA0616.2_rc_shift5 (HES2_rc)
; local_words_7nt_m22 versus MA0616.2_rc (HES2_rc); m=30/44; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.606379; -----grCACGTGcC- ; cor=; Ncor= a 0 0 0 0 0 1319.0 3849.0 0.0 8483.0 0.0 129.0 0.0 73.0 1581.0 798.0 0 c 0 0 0 0 0 1735.0 1289.0 8483.0 0.0 8483.0 0.0 2028.0 85.0 8483.0 8483.0 0 g 0 0 0 0 0 4464.0 4634.0 15.0 1098.0 0.0 8483.0 0.0 8483.0 1107.0 1193.0 0 t 0 0 0 0 0 966.0 512.0 53.0 0.0 0.0 0.0 6455.0 118.0 1501.0 775.0 0

MA0743.2_shift0 (SCRT1)
; local_words_7nt_m22 versus MA0743.2 (SCRT1); m=31/44; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.605321; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0

MA0819.1_shift5 (CLOCK)
; local_words_7nt_m22 versus MA0819.1 (CLOCK); m=32/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.602063; -----aACACGTGty- ; cor=; Ncor= a 0 0 0 0 0 226.0 429.0 11.0 429.0 16.0 40.0 3.0 0.0 1.0 89.0 0 c 0 0 0 0 0 35.0 85.0 429.0 5.0 429.0 0.0 5.0 3.0 152.0 128.0 0 g 0 0 0 0 0 93.0 89.0 2.0 15.0 0.0 429.0 5.0 429.0 110.0 39.0 0 t 0 0 0 0 0 75.0 13.0 2.0 0.0 28.0 0.0 429.0 9.0 429.0 174.0 0

MA0058.3_shift5 (MAX)
; local_words_7nt_m22 versus MA0058.3 (MAX); m=33/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.599408; -----amCACGTGcy- ; cor=; Ncor= a 0 0 0 0 0 3307.0 1915.0 39.0 6876.0 0.0 329.0 69.0 0.0 1341.0 1122.0 0 c 0 0 0 0 0 1556.0 2809.0 6876.0 0.0 6876.0 39.0 159.0 27.0 2450.0 2225.0 0 g 0 0 0 0 0 1295.0 1514.0 0.0 87.0 7.0 6876.0 20.0 6876.0 1638.0 986.0 0 t 0 0 0 0 0 719.0 637.0 0.0 38.0 229.0 19.0 6876.0 36.0 1446.0 2543.0 0

MA0744.2_shift0 (SCRT2)
; local_words_7nt_m22 versus MA0744.2 (SCRT2); m=34/44; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.598073; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0

MA1108.2_rc_shift5 (MXI1_rc)
; local_words_7nt_m22 versus MA1108.2_rc (MXI1_rc); m=35/44; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.596058; -----gmCATGTGby- ; cor=; Ncor= a 0 0 0 0 0 5366.0 6658.0 175.0 21541.0 0.0 468.0 7.0 460.0 3945.0 5212.0 0 c 0 0 0 0 0 5394.0 7228.0 21232.0 0.0 1542.0 18.0 170.0 97.0 6078.0 6326.0 0 g 0 0 0 0 0 6343.0 5329.0 114.0 507.0 0.0 21552.0 1.0 21382.0 5841.0 4724.0 0 t 0 0 0 0 0 4945.0 2833.0 527.0 0.0 20506.0 10.0 21870.0 109.0 6184.0 5786.0 0

MA1560.1_shift5 (SOHLH2)
; local_words_7nt_m22 versus MA1560.1 (SOHLH2); m=36/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.590748; -----ygCACGTGcr- ; cor=; Ncor= a 0 0 0 0 0 230.0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 381.0 0 c 0 0 0 0 0 485.0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 239.0 0 g 0 0 0 0 0 184.0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 369.0 0 t 0 0 0 0 0 313.0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0 224.0 0

MA0100.3_rc_shift5 (MYB_rc)
; local_words_7nt_m22 versus MA0100.3_rc (MYB_rc); m=37/44; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.589945; -----kdCAGTTGvk- ; cor=; Ncor= a 0 0 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 c 0 0 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 g 0 0 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 t 0 0 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0

MA1467.1_shift5 (ATOH1(var.2))
; local_words_7nt_m22 versus MA1467.1 (ATOH1(var.2)); m=38/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.588924; -----AACAGCTGTY- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0

MA1638.1_shift5 (HAND2)
; local_words_7nt_m22 versus MA1638.1 (HAND2); m=39/44; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.584624; -----amCAGATGby- ; cor=; Ncor= a 0 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 c 0 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 g 0 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 t 0 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0

MA0622.1_rc_shift6 (Mlxip_rc)
; local_words_7nt_m22 versus MA0622.1_rc (Mlxip_rc); m=40/44; ncol2=8; w=8; offset=2; strand=R; shift=6; score=0.505355; ------mCACGTGv-- ; cor=; Ncor= a 0 0 0 0 0 0 499.0 0.0 999.0 0.0 0.0 0.0 0.0 263.0 0 0 c 0 0 0 0 0 0 250.0 999.0 0.0 999.0 0.0 0.0 0.0 421.0 0 0 g 0 0 0 0 0 0 63.0 0.0 0.0 0.0 999.0 0.0 999.0 263.0 0 0 t 0 0 0 0 0 0 188.0 0.0 0.0 0.0 0.0 999.0 0.0 53.0 0 0

MA0807.1_shift8 (TBX5)
; local_words_7nt_m22 versus MA0807.1 (TBX5); m=41/44; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.499723; --------AGGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0

MA0806.1_shift8 (TBX4)
; local_words_7nt_m22 versus MA0806.1 (TBX4); m=42/44; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.495749; --------AGGTGTgA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0

MA0774.1_shift3 (MEIS2)
; local_words_7nt_m22 versus MA0774.1 (MEIS2); m=43/44; ncol2=8; w=7; offset=-1; strand=D; shift=3; score=0.415703; ---tTGACAGs----- ; cor=; Ncor= a 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 c 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 g 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 t 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0

MA0802.1_shift8 (TBR1)
; local_words_7nt_m22 versus MA0802.1 (TBR1); m=44/44; ncol2=10; w=8; offset=4; strand=D; shift=8; score=0.400182; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 34509.0 6880.0 70.0 39.0 0.0 2386.0 1175.0 34509.0 c 0 0 0 0 0 0 0 0 359.0 3255.0 254.0 1759.0 6.0 4742.0 2551.0 90.0 g 0 0 0 0 0 0 0 0 3329.0 34509.0 34509.0 88.0 34509.0 157.0 34509.0 584.0 t 0 0 0 0 0 0 0 0 1433.0 4480.0 213.0 34509.0 4.0 34509.0 7001.0 205.0

One-to-n matrix alignment; reference matrix: local_words_6nt_m13_shift4 ; 33 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m13_shift4 (local_words_6nt_m13local_words_6nt_m13)
; local_words_6nt_m13 (local_words_6nt_m13local_words_6nt_m13); m=0 (reference); ncol1=12; shift=4; ncol=18; ----srGCAGGTGCwg-- ; Alignment reference a 0 0 0 0 49 130 18 0 286 0 1 0 1 7 77 46 0 0 c 0 0 0 0 112 45 3 304 9 8 2 15 0 272 76 68 0 0 g 0 0 0 0 88 120 282 1 9 295 300 3 302 11 72 140 0 0 t 0 0 0 0 56 10 2 0 1 2 2 287 2 15 80 51 0 0

MA1631.1_rc_shift3 (ASCL1(var.2)_rc)
; local_words_6nt_m13 versus MA1631.1_rc (ASCL1(var.2)_rc); m=1/32; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.899616; ---gsrGCAGGTGchg-- ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0

MA0830.2_rc_shift3 (TCF4_rc)
; local_words_6nt_m13 versus MA0830.2_rc (TCF4_rc); m=2/32; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.898464; ---ssggCAGGTGccg-- ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0

MA1648.1_rc_shift4 (TCF12(var.2)_rc)
; local_words_6nt_m13 versus MA1648.1_rc (TCF12(var.2)_rc); m=3/32; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.867459; ----srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0

MA0522.3_rc_shift4 (TCF3_rc)
; local_words_6nt_m13 versus MA0522.3_rc (TCF3_rc); m=4/32; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.863662; ----ssGCAGGTGbs--- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0

MA0103.3_rc_shift4 (ZEB1_rc)
; local_words_6nt_m13 versus MA0103.3_rc (ZEB1_rc); m=5/32; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.825667; ----sssCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0 0 0

MA0745.2_rc_shift3 (SNAI2_rc)
; local_words_6nt_m13 versus MA0745.2_rc (SNAI2_rc); m=6/32; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.78539; ---rykACAGGTGcrt-- ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; local_words_6nt_m13 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=7/32; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.783419; ----rmaCAGGTGtky-- ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0

MA1558.1_shift5 (SNAI1)
; local_words_6nt_m13 versus MA1558.1 (SNAI1); m=8/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.778717; -----drCAGGTGyr--- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0

MA0499.2_rc_shift3 (MYOD1_rc)
; local_words_6nt_m13 versus MA0499.2_rc (MYOD1_rc); m=9/32; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.770704; ---rkrACAGGTGcwg-- ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0

MA1559.1_shift5 (SNAI3)
; local_words_6nt_m13 versus MA1559.1 (SNAI3); m=10/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.748999; -----arCAGGTGya--- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0

MA0500.2_rc_shift4 (MYOG_rc)
; local_words_6nt_m13 versus MA0500.2_rc (MYOG_rc); m=11/32; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.746517; ----sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA0822.1_rc_shift4 (HES7_rc)
; local_words_6nt_m13 versus MA0822.1_rc (HES7_rc); m=12/32; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.739973; ----yGGCACGTGCCr-- ; cor=; Ncor= a 0 0 0 0 137.0 9.0 93.0 0.0 1864.0 1.0 0.0 0.0 3.0 2.0 3.0 863.0 0 0 c 0 0 0 0 734.0 9.0 5.0 1864.0 1.0 1864.0 0.0 7.0 0.0 1864.0 1864.0 43.0 0 0 g 0 0 0 0 47.0 1864.0 1864.0 1.0 3.0 1.0 1864.0 3.0 1864.0 29.0 19.0 790.0 0 0 t 0 0 0 0 946.0 0.0 8.0 2.0 3.0 4.0 0.0 1864.0 1.0 160.0 24.0 168.0 0 0

MA0821.1_rc_shift4 (HES5_rc)
; local_words_6nt_m13 versus MA0821.1_rc (HES5_rc); m=13/32; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.725214; ----yGGCACGTGyCr-- ; cor=; Ncor= a 0 0 0 0 279.0 14.0 267.0 0.0 1559.0 0.0 1.0 0.0 0.0 0.0 1.0 535.0 0 0 c 0 0 0 0 475.0 1.0 14.0 1559.0 0.0 1559.0 0.0 1.0 0.0 1559.0 1559.0 30.0 0 0 g 0 0 0 0 153.0 1559.0 1559.0 0.0 7.0 0.0 1559.0 0.0 1559.0 63.0 6.0 779.0 0 0 t 0 0 0 0 651.0 0.0 0.0 0.0 0.0 1.0 1.0 1559.0 0.0 764.0 47.0 216.0 0 0

MA1100.2_shift5 (ASCL1)
; local_words_6nt_m13 versus MA1100.2 (ASCL1); m=14/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.701734; -----rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0521.1_shift5 (Tcf12)
; local_words_6nt_m13 versus MA0521.1 (Tcf12); m=15/32; ncol2=11; w=11; offset=1; strand=D; shift=5; score=0.694116; -----rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA1621.1_rc_shift3 (Rbpjl_rc)
; local_words_6nt_m13 versus MA1621.1_rc (Rbpjl_rc); m=16/32; ncol2=14; w=12; offset=-1; strand=R; shift=3; score=0.688176; ---grsaCAGGTGtkbs- ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0

MA0048.2_rc_shift5 (NHLH1_rc)
; local_words_6nt_m13 versus MA0048.2_rc (NHLH1_rc); m=17/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.67536; -----mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA0820.1_rc_shift5 (FIGLA_rc)
; local_words_6nt_m13 versus MA0820.1_rc (FIGLA_rc); m=18/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.651698; -----wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0

MA0816.1_rc_shift5 (Ascl2_rc)
; local_words_6nt_m13 versus MA0816.1_rc (Ascl2_rc); m=19/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.650977; -----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA1560.1_rc_shift5 (SOHLH2_rc)
; local_words_6nt_m13 versus MA1560.1_rc (SOHLH2_rc); m=20/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.642847; -----ygCACGTGcr--- ; cor=; Ncor= a 0 0 0 0 0 224.0 153.0 4.0 1212.0 15.0 7.0 0.0 70.0 276.0 313.0 0 0 0 c 0 0 0 0 0 369.0 172.0 1212.0 0.0 1212.0 11.0 41.0 29.0 1212.0 184.0 0 0 0 g 0 0 0 0 0 239.0 1212.0 4.0 65.0 0.0 1212.0 0.0 1212.0 264.0 485.0 0 0 0 t 0 0 0 0 0 381.0 272.0 41.0 36.0 14.0 0.0 1212.0 45.0 172.0 230.0 0 0 0

MA0616.2_shift5 (HES2)
; local_words_6nt_m13 versus MA0616.2 (HES2); m=21/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.61043; -----GgCACGTGyc--- ; cor=; Ncor= a 0 0 0 0 0 775.0 1501.0 118.0 6455.0 0.0 0.0 0.0 53.0 512.0 966.0 0 0 0 c 0 0 0 0 0 1193.0 1107.0 8483.0 0.0 8483.0 0.0 1098.0 15.0 4634.0 4464.0 0 0 0 g 0 0 0 0 0 8483.0 8483.0 85.0 2028.0 0.0 8483.0 0.0 8483.0 1289.0 1735.0 0 0 0 t 0 0 0 0 0 798.0 1581.0 73.0 0.0 129.0 0.0 8483.0 0.0 3849.0 1319.0 0 0 0

MA0825.1_shift5 (MNT)
; local_words_6nt_m13 versus MA0825.1 (MNT); m=22/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.599937; -----avCACGTGcy--- ; cor=; Ncor= a 0 0 0 0 0 279.0 187.0 27.0 681.0 0.0 15.0 0.0 0.0 150.0 159.0 0 0 0 c 0 0 0 0 0 128.0 228.0 681.0 0.0 681.0 0.0 0.0 0.0 281.0 229.0 0 0 0 g 0 0 0 0 0 145.0 203.0 0.0 0.0 7.0 681.0 15.0 681.0 131.0 75.0 0 0 0 t 0 0 0 0 0 129.0 63.0 5.0 21.0 16.0 0.0 681.0 25.0 120.0 219.0 0 0 0

MA0823.1_rc_shift5 (HEY1_rc)
; local_words_6nt_m13 versus MA0823.1_rc (HEY1_rc); m=23/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.599606; -----grCACGTGyc--- ; cor=; Ncor= a 0 0 0 0 0 318.0 863.0 22.0 3338.0 0.0 0.0 21.0 15.0 110.0 352.0 0 0 0 c 0 0 0 0 0 373.0 380.0 3338.0 10.0 3338.0 0.0 123.0 3.0 1199.0 1788.0 0 0 0 g 0 0 0 0 0 2172.0 1762.0 19.0 474.0 18.0 3338.0 30.0 3338.0 656.0 761.0 0 0 0 t 0 0 0 0 0 475.0 333.0 32.0 0.0 0.0 0.0 3338.0 1.0 1373.0 437.0 0 0 0

MA1635.1_rc_shift5 (BHLHE22(var.2)_rc)
; local_words_6nt_m13 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=24/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.598919; -----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA0464.2_rc_shift5 (BHLHE40_rc)
; local_words_6nt_m13 versus MA0464.2_rc (BHLHE40_rc); m=25/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.597838; -----gkCACGTGmb--- ; cor=; Ncor= a 0 0 0 0 0 2587.0 500.0 72.0 11222.0 0.0 32.0 77.0 14.0 6222.0 1447.0 0 0 0 c 0 0 0 0 0 1385.0 129.0 11222.0 87.0 11222.0 2.0 78.0 0.0 5000.0 2926.0 0 0 0 g 0 0 0 0 0 5706.0 5295.0 12.0 248.0 30.0 11222.0 130.0 11222.0 481.0 3025.0 0 0 0 t 0 0 0 0 0 1544.0 5927.0 4.0 167.0 66.0 23.0 11222.0 59.0 1391.0 3824.0 0 0 0

MA0649.1_rc_shift5 (HEY2_rc)
; local_words_6nt_m13 versus MA0649.1_rc (HEY2_rc); m=26/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.585074; -----grCACGTGyC--- ; cor=; Ncor= a 0 0 0 0 0 264.0 753.0 30.0 1800.0 0.0 0.0 0.0 58.0 224.0 101.0 0 0 0 c 0 0 0 0 0 382.0 128.0 1800.0 0.0 1800.0 0.0 128.0 83.0 620.0 1800.0 0 0 0 g 0 0 0 0 0 869.0 1047.0 34.0 120.0 72.0 1800.0 0.0 1800.0 305.0 99.0 0 0 0 t 0 0 0 0 0 285.0 50.0 0.0 36.0 27.0 7.0 1800.0 84.0 651.0 107.0 0 0 0

MA0058.3_rc_shift5 (MAX_rc)
; local_words_6nt_m13 versus MA0058.3_rc (MAX_rc); m=27/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.584958; -----rgCACGTGkt--- ; cor=; Ncor= a 0 0 0 0 0 2543.0 1446.0 36.0 6876.0 19.0 229.0 38.0 0.0 637.0 719.0 0 0 0 c 0 0 0 0 0 986.0 1638.0 6876.0 20.0 6876.0 7.0 87.0 0.0 1514.0 1295.0 0 0 0 g 0 0 0 0 0 2225.0 2450.0 27.0 159.0 39.0 6876.0 0.0 6876.0 2809.0 1556.0 0 0 0 t 0 0 0 0 0 1122.0 1341.0 0.0 69.0 329.0 0.0 6876.0 39.0 1915.0 3307.0 0 0 0

MA0807.1_shift8 (TBX5)
; local_words_6nt_m13 versus MA0807.1 (TBX5); m=28/32; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.497884; --------AGGTGTkA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 0 0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 0 0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 0 0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0 0 0

MA1628.1_shift2 (Zic1::Zic2)
; local_words_6nt_m13 versus MA1628.1 (Zic1::Zic2); m=29/32; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.496836; --cvCAGCAGGsr----- ; cor=; Ncor= a 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 0 0 0 0 c 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 0 0 0 0 g 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 0 0 0 0 t 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0 0 0 0 0

MA0806.1_shift8 (TBX4)
; local_words_6nt_m13 versus MA0806.1 (TBX4); m=30/32; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.489379; --------AGGTGTgA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 0 0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 0 0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 0 0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0 0 0

MA1529.1_shift1 (NHLH2)
; local_words_6nt_m13 versus MA1529.1 (NHLH2); m=31/32; ncol2=18; w=12; offset=-3; strand=D; shift=1; score=0.485427; -ggGyMGCAGCTGCGyCm ; cor=; Ncor= a 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 c 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 g 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 t 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0

MA1629.1_shift0 (Zic2)
; local_words_6nt_m13 versus MA1629.1 (Zic2); m=32/32; ncol2=14; w=10; offset=-4; strand=D; shift=0; score=0.449541; mkCaCAGCAGGrrg---- ; cor=; Ncor= a 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0 0 0 0 0 c 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0 0 0 0 0 g 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0 0 0 0 0 t 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_6nt_m10_shift3 ; 33 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m10_shift3 (local_words_6nt_m10local_words_6nt_m10)
; local_words_6nt_m10 (local_words_6nt_m10local_words_6nt_m10); m=0 (reference); ncol1=12; shift=3; ncol=18; ---crGCACCTGCys--- ; Alignment reference a 0 0 0 50 80 15 2 286 2 2 1 0 2 10 56 0 0 0 c 0 0 0 139 72 10 300 3 298 293 9 1 280 119 87 0 0 0 g 0 0 0 68 76 271 0 14 2 8 9 302 3 44 111 0 0 0 t 0 0 0 46 75 7 1 0 1 0 284 0 18 130 49 0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; local_words_6nt_m10 versus MA1631.1 (ASCL1(var.2)); m=1/32; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.899425; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0830.2_shift3 (TCF4)
; local_words_6nt_m10 versus MA0830.2 (TCF4); m=2/32; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.898318; ---cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA1648.1_shift4 (TCF12(var.2))
; local_words_6nt_m10 versus MA1648.1 (TCF12(var.2)); m=3/32; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.867078; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift4 (TCF3)
; local_words_6nt_m10 versus MA0522.3 (TCF3); m=4/32; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.863305; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0103.3_shift4 (ZEB1)
; local_words_6nt_m10 versus MA0103.3 (ZEB1); m=5/32; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.825355; ----ssCACCTGsss--- ; cor=; Ncor= a 0 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 c 0 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 g 0 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 t 0 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0

MA0745.2_shift3 (SNAI2)
; local_words_6nt_m10 versus MA0745.2 (SNAI2); m=6/32; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.785283; ---aygCACCTGTmry-- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0

MA1620.1_shift3 (Ptf1a(var.3))
; local_words_6nt_m10 versus MA1620.1 (Ptf1a(var.3)); m=7/32; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.78345; ---rmaCACCTGtky--- ; cor=; Ncor= a 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 c 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 g 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 t 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0

MA1558.1_rc_shift4 (SNAI1_rc)
; local_words_6nt_m10 versus MA1558.1_rc (SNAI1_rc); m=8/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.778501; ----yrCACCTGyh---- ; cor=; Ncor= a 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0

MA0499.2_shift3 (MYOD1)
; local_words_6nt_m10 versus MA0499.2 (MYOD1); m=9/32; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.770782; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA1559.1_rc_shift4 (SNAI3_rc)
; local_words_6nt_m10 versus MA1559.1_rc (SNAI3_rc); m=10/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.74868; ----trCACCTGyt---- ; cor=; Ncor= a 0 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 c 0 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 g 0 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 t 0 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0

MA0500.2_shift3 (MYOG)
; local_words_6nt_m10 versus MA0500.2 (MYOG); m=11/32; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.74675; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA0822.1_shift3 (HES7)
; local_words_6nt_m10 versus MA0822.1 (HES7); m=12/32; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.740352; ---yGGCACGTGCCr--- ; cor=; Ncor= a 0 0 0 168.0 24.0 160.0 1.0 1864.0 0.0 4.0 3.0 2.0 8.0 0.0 946.0 0 0 0 c 0 0 0 790.0 19.0 29.0 1864.0 3.0 1864.0 1.0 3.0 1.0 1864.0 1864.0 47.0 0 0 0 g 0 0 0 43.0 1864.0 1864.0 0.0 7.0 0.0 1864.0 1.0 1864.0 5.0 9.0 734.0 0 0 0 t 0 0 0 863.0 3.0 2.0 3.0 0.0 0.0 1.0 1864.0 0.0 93.0 9.0 137.0 0 0 0

MA0821.1_shift3 (HES5)
; local_words_6nt_m10 versus MA0821.1 (HES5); m=13/32; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.725519; ---yGrCACGTGCCr--- ; cor=; Ncor= a 0 0 0 216.0 47.0 764.0 0.0 1559.0 1.0 1.0 0.0 0.0 0.0 0.0 651.0 0 0 0 c 0 0 0 779.0 6.0 63.0 1559.0 0.0 1559.0 0.0 7.0 0.0 1559.0 1559.0 153.0 0 0 0 g 0 0 0 30.0 1559.0 1559.0 0.0 1.0 0.0 1559.0 0.0 1559.0 14.0 1.0 475.0 0 0 0 t 0 0 0 535.0 1.0 0.0 0.0 0.0 1.0 0.0 1559.0 0.0 267.0 14.0 279.0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; local_words_6nt_m10 versus MA1100.2_rc (ASCL1_rc); m=14/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.70187; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_6nt_m10 versus MA0521.1_rc (Tcf12_rc); m=15/32; ncol2=11; w=11; offset=0; strand=R; shift=3; score=0.694143; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1621.1_shift2 (Rbpjl)
; local_words_6nt_m10 versus MA1621.1 (Rbpjl); m=16/32; ncol2=14; w=12; offset=-1; strand=D; shift=2; score=0.688191; --svmaCACCTGtsyc-- ; cor=; Ncor= a 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 c 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 g 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 t 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0

MA0048.2_shift4 (NHLH1)
; local_words_6nt_m10 versus MA0048.2 (NHLH1); m=17/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.675602; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; local_words_6nt_m10 versus MA0820.1 (FIGLA); m=18/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.651592; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

MA0816.1_shift4 (Ascl2)
; local_words_6nt_m10 versus MA0816.1 (Ascl2); m=19/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.651371; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1560.1_shift4 (SOHLH2)
; local_words_6nt_m10 versus MA1560.1 (SOHLH2); m=20/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.642853; ----ygCACGTGcr---- ; cor=; Ncor= a 0 0 0 0 230.0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 381.0 0 0 0 0 c 0 0 0 0 485.0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 239.0 0 0 0 0 g 0 0 0 0 184.0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 369.0 0 0 0 0 t 0 0 0 0 313.0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0 224.0 0 0 0 0

MA0616.2_rc_shift4 (HES2_rc)
; local_words_6nt_m10 versus MA0616.2_rc (HES2_rc); m=21/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.610439; ----grCACGTGcC---- ; cor=; Ncor= a 0 0 0 0 1319.0 3849.0 0.0 8483.0 0.0 129.0 0.0 73.0 1581.0 798.0 0 0 0 0 c 0 0 0 0 1735.0 1289.0 8483.0 0.0 8483.0 0.0 2028.0 85.0 8483.0 8483.0 0 0 0 0 g 0 0 0 0 4464.0 4634.0 15.0 1098.0 0.0 8483.0 0.0 8483.0 1107.0 1193.0 0 0 0 0 t 0 0 0 0 966.0 512.0 53.0 0.0 0.0 0.0 6455.0 118.0 1501.0 775.0 0 0 0 0

MA0825.1_rc_shift4 (MNT_rc)
; local_words_6nt_m10 versus MA0825.1_rc (MNT_rc); m=22/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.600114; ----rgCACGTGbt---- ; cor=; Ncor= a 0 0 0 0 219.0 120.0 25.0 681.0 0.0 16.0 21.0 5.0 63.0 129.0 0 0 0 0 c 0 0 0 0 75.0 131.0 681.0 15.0 681.0 7.0 0.0 0.0 203.0 145.0 0 0 0 0 g 0 0 0 0 229.0 281.0 0.0 0.0 0.0 681.0 0.0 681.0 228.0 128.0 0 0 0 0 t 0 0 0 0 159.0 150.0 0.0 0.0 15.0 0.0 681.0 27.0 187.0 279.0 0 0 0 0

MA0823.1_shift4 (HEY1)
; local_words_6nt_m10 versus MA0823.1 (HEY1); m=23/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.599661; ----grCACGTGyc---- ; cor=; Ncor= a 0 0 0 0 437.0 1373.0 1.0 3338.0 0.0 0.0 0.0 32.0 333.0 475.0 0 0 0 0 c 0 0 0 0 761.0 656.0 3338.0 30.0 3338.0 18.0 474.0 19.0 1762.0 2172.0 0 0 0 0 g 0 0 0 0 1788.0 1199.0 3.0 123.0 0.0 3338.0 10.0 3338.0 380.0 373.0 0 0 0 0 t 0 0 0 0 352.0 110.0 15.0 21.0 0.0 0.0 3338.0 22.0 863.0 318.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; local_words_6nt_m10 versus MA1635.1 (BHLHE22(var.2)); m=24/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.598826; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA0464.2_shift4 (BHLHE40)
; local_words_6nt_m10 versus MA0464.2 (BHLHE40); m=25/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.598036; ----vkCACGTGmc---- ; cor=; Ncor= a 0 0 0 0 3824.0 1391.0 59.0 11222.0 23.0 66.0 167.0 4.0 5927.0 1544.0 0 0 0 0 c 0 0 0 0 3025.0 481.0 11222.0 130.0 11222.0 30.0 248.0 12.0 5295.0 5706.0 0 0 0 0 g 0 0 0 0 2926.0 5000.0 0.0 78.0 2.0 11222.0 87.0 11222.0 129.0 1385.0 0 0 0 0 t 0 0 0 0 1447.0 6222.0 14.0 77.0 32.0 0.0 11222.0 72.0 500.0 2587.0 0 0 0 0

MA0649.1_shift4 (HEY2)
; local_words_6nt_m10 versus MA0649.1 (HEY2); m=26/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.585196; ----GrCACGTGyc---- ; cor=; Ncor= a 0 0 0 0 107.0 651.0 84.0 1800.0 7.0 27.0 36.0 0.0 50.0 285.0 0 0 0 0 c 0 0 0 0 99.0 305.0 1800.0 0.0 1800.0 72.0 120.0 34.0 1047.0 869.0 0 0 0 0 g 0 0 0 0 1800.0 620.0 83.0 128.0 0.0 1800.0 0.0 1800.0 128.0 382.0 0 0 0 0 t 0 0 0 0 101.0 224.0 58.0 0.0 0.0 0.0 1800.0 30.0 753.0 264.0 0 0 0 0

MA0058.3_shift4 (MAX)
; local_words_6nt_m10 versus MA0058.3 (MAX); m=27/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.585059; ----amCACGTGcy---- ; cor=; Ncor= a 0 0 0 0 3307.0 1915.0 39.0 6876.0 0.0 329.0 69.0 0.0 1341.0 1122.0 0 0 0 0 c 0 0 0 0 1556.0 2809.0 6876.0 0.0 6876.0 39.0 159.0 27.0 2450.0 2225.0 0 0 0 0 g 0 0 0 0 1295.0 1514.0 0.0 87.0 7.0 6876.0 20.0 6876.0 1638.0 986.0 0 0 0 0 t 0 0 0 0 719.0 637.0 0.0 38.0 229.0 19.0 6876.0 36.0 1446.0 2543.0 0 0 0 0

MA0807.1_rc_shift3 (TBX5_rc)
; local_words_6nt_m10 versus MA0807.1_rc (TBX5_rc); m=28/32; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.498072; ---TmACACCT------- ; cor=; Ncor= a 0 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 0 c 0 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 0 g 0 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 0 t 0 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0 0

MA1628.1_rc_shift6 (Zic1::Zic2_rc)
; local_words_6nt_m10 versus MA1628.1_rc (Zic1::Zic2_rc); m=29/32; ncol2=11; w=9; offset=3; strand=R; shift=6; score=0.496725; ------ysCCTGCTGbg- ; cor=; Ncor= a 0 0 0 0 0 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 0 c 0 0 0 0 0 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 0 g 0 0 0 0 0 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 0 t 0 0 0 0 0 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0 0

MA0806.1_rc_shift3 (TBX4_rc)
; local_words_6nt_m10 versus MA0806.1_rc (TBX4_rc); m=30/32; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.489638; ---TcACACCT------- ; cor=; Ncor= a 0 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 0 0 0 c 0 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 0 0 0 g 0 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 0 0 0 t 0 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0 0 0 0

MA1529.1_rc_shift0 (NHLH2_rc)
; local_words_6nt_m10 versus MA1529.1_rc (NHLH2_rc); m=31/32; ncol2=18; w=12; offset=-3; strand=R; shift=0; score=0.485552; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA1629.1_rc_shift5 (Zic2_rc)
; local_words_6nt_m10 versus MA1629.1_rc (Zic2_rc); m=32/32; ncol2=14; w=10; offset=2; strand=R; shift=5; score=0.449218; -----cyyCCTGCTGtGm ; cor=; Ncor= a 0 0 0 0 0 2104.0 1641.0 2472.0 154.0 410.0 441.0 298.0 67.0 268.0 120.0 2437.0 240.0 3893.0 c 0 0 0 0 0 5314.0 4979.0 4911.0 11465.0 11184.0 735.0 269.0 11484.0 186.0 188.0 829.0 585.0 3821.0 g 0 0 0 0 0 2168.0 1661.0 1476.0 204.0 133.0 118.0 11272.0 228.0 391.0 11476.0 1765.0 9933.0 1755.0 t 0 0 0 0 0 2333.0 3638.0 3060.0 96.0 192.0 10625.0 80.0 140.0 11074.0 135.0 6888.0 1161.0 2450.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m2_shift0 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m2_shift0 (oligos_7nt_mkv4_m2oligos_7nt_mkv4_m2)
; oligos_7nt_mkv4_m2 (oligos_7nt_mkv4_m2oligos_7nt_mkv4_m2); m=0 (reference); ncol1=14; shift=0; ncol=20; sctGCAsCTGTCmc------ ; Alignment reference a 85 71 48 30 1 409 4 7 2 0 3 4 120 50 0 0 0 0 0 0 c 135 167 52 44 419 3 283 408 3 3 8 357 124 185 0 0 0 0 0 0 g 113 98 48 335 0 4 120 3 1 415 5 17 91 93 0 0 0 0 0 0 t 87 84 272 11 0 4 13 2 414 2 404 42 85 92 0 0 0 0 0 0

MA0499.2_shift1 (MYOD1)
; oligos_7nt_mkv4_m2 versus MA0499.2 (MYOD1); m=1/33; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.897997; -cwgCACCTGTymy------ ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 0 0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 0 0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 0 0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0 0 0 0

MA0745.2_shift1 (SNAI2)
; oligos_7nt_mkv4_m2 versus MA0745.2 (SNAI2); m=2/33; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.862169; -aygCACCTGTmry------ ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 0 0 0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 0 0 0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 0 0 0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0 0 0 0 0

MA1621.1_shift0 (Rbpjl)
; oligos_7nt_mkv4_m2 versus MA1621.1 (Rbpjl); m=3/33; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.831557; svmaCACCTGtsyc------ ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 0 0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 0 0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 0 0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0 0 0 0

MA0830.2_shift1 (TCF4)
; oligos_7nt_mkv4_m2 versus MA0830.2 (TCF4); m=4/33; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.772913; -cggCACCTGccss------ ; cor=; Ncor= a 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 0 0 0 0 c 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 0 0 0 0 g 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 0 0 0 0 t 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0 0 0 0 0

MA1631.1_shift1 (ASCL1(var.2))
; oligos_7nt_mkv4_m2 versus MA1631.1 (ASCL1(var.2)); m=5/33; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.751607; -cdgCACCTGCysc------ ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 0 0 0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 0 0 0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 0 0 0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0 0 0 0

MA1620.1_shift1 (Ptf1a(var.3))
; oligos_7nt_mkv4_m2 versus MA1620.1 (Ptf1a(var.3)); m=6/33; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.703686; -rmaCACCTGtky------- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 0 0 0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 0 0 0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 0 0 0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0 0 0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; oligos_7nt_mkv4_m2 versus MA0521.1_rc (Tcf12_rc); m=7/33; ncol2=11; w=11; offset=1; strand=R; shift=1; score= 0.6788; -cwsCAGCTGYy-------- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0 0

MA1618.1_rc_shift0 (Ptf1a_rc)
; oligos_7nt_mkv4_m2 versus MA1618.1_rc (Ptf1a_rc); m=8/33; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.650551; dmaaCATCTGtkh------- ; cor=; Ncor= a 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 0 0 0 0 c 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 0 0 0 0 g 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 0 0 0 0 t 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0 0 0 0 0

MA0500.2_shift1 (MYOG)
; oligos_7nt_mkv4_m2 versus MA0500.2 (MYOG); m=9/33; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.647656; -sarCAGCTGyts------- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0 0

MA1619.1_shift1 (Ptf1a(var.2))
; oligos_7nt_mkv4_m2 versus MA1619.1 (Ptf1a(var.2)); m=10/33; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.647333; -rmaCAGCTGtky------- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0 0 0

MA1641.1_rc_shift1 (MYF5_rc)
; oligos_7nt_mkv4_m2 versus MA1641.1_rc (MYF5_rc); m=11/33; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.646371; -gvaCAGCTGtbc------- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 0 0 0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 0 0 0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0 0 0 0 0

MA1559.1_rc_shift2 (SNAI3_rc)
; oligos_7nt_mkv4_m2 versus MA1559.1_rc (SNAI3_rc); m=12/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.642604; --trCACCTGyt-------- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 0 0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 0 0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 0 0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0 0 0 0 0

MA0103.3_shift2 (ZEB1)
; oligos_7nt_mkv4_m2 versus MA0103.3 (ZEB1); m=13/33; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.614515; --ssCACCTGsss------- ; cor=; Ncor= a 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 0 0 0 0 c 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 0 0 0 0 g 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 0 0 0 0 t 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0 0 0 0 0

MA0783.1_rc_shift1 (PKNOX2_rc)
; oligos_7nt_mkv4_m2 versus MA0783.1_rc (PKNOX2_rc); m=14/33; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.612015; -TGACAsCTGTCA------- ; cor=; Ncor= a 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 0 0 0 0 c 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 0 0 0 0 g 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 0 0 0 0 t 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0 0 0 0 0

MA1558.1_rc_shift2 (SNAI1_rc)
; oligos_7nt_mkv4_m2 versus MA1558.1_rc (SNAI1_rc); m=15/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.596558; --yrCACCTGyh-------- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 0 0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 0 0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 0 0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0 0 0 0 0

MA0820.1_shift2 (FIGLA)
; oligos_7nt_mkv4_m2 versus MA0820.1 (FIGLA); m=16/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.569127; --wmCACCTGkw-------- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0 0 0 0

MA1100.2_rc_shift2 (ASCL1_rc)
; oligos_7nt_mkv4_m2 versus MA1100.2_rc (ASCL1_rc); m=17/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.567995; --rgCAGCTGyy-------- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0 0 0

MA1648.1_shift2 (TCF12(var.2))
; oligos_7nt_mkv4_m2 versus MA1648.1 (TCF12(var.2)); m=18/33; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.565349; --ssCACCTGCys------- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 0 0 0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 0 0 0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 0 0 0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0 0 0 0 0

MA0522.3_shift2 (TCF3)
; oligos_7nt_mkv4_m2 versus MA0522.3 (TCF3); m=19/33; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.560099; --svCACCTGCss------- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 0 0 0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 0 0 0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 0 0 0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0 0 0 0 0

MA0744.2_rc_shift1 (SCRT2_rc)
; oligos_7nt_mkv4_m2 versus MA0744.2_rc (SCRT2_rc); m=20/33; ncol2=16; w=13; offset=1; strand=R; shift=1; score=0.546238; -waccACCTGTTGmwyy--- ; cor=; Ncor= a 0 21453.0 18751.0 15588.0 11335.0 58889.0 2140.0 1471.0 1184.0 204.0 953.0 4384.0 3732.0 17252.0 16873.0 12071.0 15730.0 0 0 0 c 0 12430.0 14716.0 25288.0 38133.0 1168.0 60636.0 56105.0 252.0 319.0 1878.0 2265.0 1339.0 35769.0 12473.0 17497.0 17680.0 0 0 0 g 0 13846.0 16085.0 11351.0 5661.0 3475.0 972.0 728.0 294.0 64856.0 413.0 5536.0 59161.0 7236.0 6319.0 12732.0 13345.0 0 0 0 t 0 17881.0 16058.0 13383.0 10481.0 2078.0 1862.0 7306.0 63880.0 231.0 62366.0 53425.0 1378.0 5353.0 29945.0 23310.0 18855.0 0 0 0

MA0743.2_rc_shift1 (SCRT1_rc)
; oligos_7nt_mkv4_m2 versus MA0743.2_rc (SCRT1_rc); m=21/33; ncol2=16; w=13; offset=1; strand=R; shift=1; score=0.541842; -wacCACCTGTTGmwtw--- ; cor=; Ncor= a 0 19839.0 18454.0 13726.0 7910.0 57969.0 1579.0 1305.0 1058.0 215.0 1002.0 4017.0 2621.0 31975.0 24326.0 12449.0 15464.0 0 0 0 c 0 11049.0 13470.0 26973.0 41190.0 259.0 56500.0 51330.0 159.0 224.0 1566.0 1835.0 1297.0 16396.0 10154.0 14514.0 14307.0 0 0 0 g 0 12837.0 14903.0 8788.0 3296.0 1098.0 466.0 557.0 234.0 59557.0 370.0 8751.0 54835.0 7425.0 8693.0 10314.0 14118.0 0 0 0 t 0 16484.0 13382.0 10722.0 7813.0 883.0 1664.0 7017.0 58758.0 213.0 57271.0 45606.0 1456.0 4413.0 17036.0 22932.0 16320.0 0 0 0

MA1467.1_shift2 (ATOH1(var.2))
; oligos_7nt_mkv4_m2 versus MA1467.1 (ATOH1(var.2)); m=22/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.538082; --AACAGCTGTY-------- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0 0 0

MA1472.1_shift2 (BHLHA15(var.2))
; oligos_7nt_mkv4_m2 versus MA1472.1 (BHLHA15(var.2)); m=23/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.536827; --avCAGCTGyy-------- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0 0 0 0

MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; oligos_7nt_mkv4_m2 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=24/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.532022; --csCAGCTGsg-------- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0 0 0

MA0816.1_rc_shift2 (Ascl2_rc)
; oligos_7nt_mkv4_m2 versus MA0816.1_rc (Ascl2_rc); m=25/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.51665; --rrCAGCTGyt-------- ; cor=; Ncor= a 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 0 0 0 0 c 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 0 0 0 0 g 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 0 0 0 0 t 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0 0 0 0 0

MA1493.1_shift2 (HES6)
; oligos_7nt_mkv4_m2 versus MA1493.1 (HES6); m=26/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.507492; --GGCACGTGTy-------- ; cor=; Ncor= a 0 0 12.0 16.0 17.0 439.0 2.0 10.0 0.0 0.0 33.0 79.0 0 0 0 0 0 0 0 0 c 0 0 39.0 35.0 439.0 0.0 439.0 12.0 7.0 0.0 21.0 152.0 0 0 0 0 0 0 0 0 g 0 0 439.0 439.0 19.0 9.0 9.0 439.0 29.0 439.0 0.0 0.0 0 0 0 0 0 0 0 0 t 0 0 43.0 13.0 15.0 11.0 16.0 0.0 439.0 0.0 439.0 209.0 0 0 0 0 0 0 0 0

MA0626.1_shift2 (Npas2)
; oligos_7nt_mkv4_m2 versus MA0626.1 (Npas2); m=27/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.50252; --dsCACGTGtm-------- ; cor=; Ncor= a 0 0 273.0 154.0 0.0 999.0 81.0 81.0 0.0 81.0 74.0 297.0 0 0 0 0 0 0 0 0 c 0 0 177.0 377.0 999.0 0.0 918.0 0.0 0.0 0.0 172.0 299.0 0 0 0 0 0 0 0 0 g 0 0 293.0 420.0 0.0 0.0 0.0 918.0 0.0 918.0 188.0 202.0 0 0 0 0 0 0 0 0 t 0 0 257.0 48.0 0.0 0.0 0.0 0.0 999.0 0.0 566.0 202.0 0 0 0 0 0 0 0 0

MA0100.3_shift2 (MYB)
; oligos_7nt_mkv4_m2 versus MA0100.3 (MYB); m=28/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.500371; --mbCAACTGhm-------- ; cor=; Ncor= a 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 0 0 0 0 0 0 c 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 0 0 0 0 0 0 g 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 0 0 0 0 0 0 t 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0 0 0 0 0 0 0

MA0774.1_rc_shift6 (MEIS2_rc)
; oligos_7nt_mkv4_m2 versus MA0774.1_rc (MEIS2_rc); m=29/33; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.495505; ------sCTGTCAa------ ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 0 0 0 0 0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 0 0 0 0 0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 0 0 0 0 0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0 0 0 0 0 0

MA0775.1_rc_shift6 (MEIS3_rc)
; oligos_7nt_mkv4_m2 versus MA0775.1_rc (MEIS3_rc); m=30/33; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.487569; ------scTGTCAw------ ; cor=; Ncor= a 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 0 0 0 0 0 c 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 0 0 0 0 0 g 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 0 0 0 0 0 t 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0 0 0 0 0 0

MA0498.2_rc_shift7 (MEIS1_rc)
; oligos_7nt_mkv4_m2 versus MA0498.2_rc (MEIS1_rc); m=31/33; ncol2=7; w=7; offset=7; strand=R; shift=7; score=0.419131; -------cTGTCAw------ ; cor=; Ncor= a 0 0 0 0 0 0 0 15106.0 3861.0 1155.0 0.0 0.0 77159.0 24921.0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 29965.0 9263.0 0.0 672.0 77159.0 3174.0 9714.0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 14864.0 0.0 77159.0 2903.0 1249.0 5575.0 18797.0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 17224.0 77159.0 0.0 77159.0 0.0 8690.0 23727.0 0 0 0 0 0 0

MA0622.1_shift3 (Mlxip)
; oligos_7nt_mkv4_m2 versus MA0622.1 (Mlxip); m=32/33; ncol2=8; w=8; offset=3; strand=D; shift=3; score=0.414256; ---bCACGTGk--------- ; cor=; Ncor= a 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 0 0 0 0 0 0 0 0 0 c 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 0 0 0 0 0 0 0 0 0 g 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 0 0 0 0 0 0 0 0 0 t 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0 0 0 0 0 0 0 0 0 0

MA1114.1_rc_shift3 (PBX3_rc)
; oligos_7nt_mkv4_m2 versus MA1114.1_rc (PBX3_rc); m=33/33; ncol2=17; w=11; offset=3; strand=R; shift=3; score=0.404432; ---sygcCTGTCACTCAvmc ; cor=; Ncor= a 0 0 0 1508.0 1465.0 1525.0 683.0 549.0 376.0 138.0 145.0 83.0 6290.0 969.0 256.0 160.0 5697.0 1924.0 1853.0 1523.0 c 0 0 0 2217.0 2068.0 1591.0 4077.0 5691.0 425.0 209.0 604.0 6550.0 285.0 4929.0 214.0 6406.0 503.0 1928.0 1934.0 2192.0 g 0 0 0 1801.0 1619.0 2654.0 1377.0 412.0 129.0 6524.0 108.0 242.0 199.0 788.0 125.0 227.0 225.0 1849.0 1724.0 1711.0 t 0 0 0 1495.0 1869.0 1251.0 884.0 369.0 6091.0 150.0 6164.0 146.0 247.0 335.0 6426.0 228.0 596.0 1320.0 1510.0 1595.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m33_shift2 ; 53 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m33_shift2 (oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33)
; oligos_7nt_mkv4_m33 (oligos_7nt_mkv4_m33oligos_7nt_mkv4_m33); m=0 (reference); ncol1=13; shift=2; ncol=16; --gvACACCTGTTsy- ; Alignment reference a 0 0 117 143 369 2 537 19 5 1 0 5 7 103 75 0 c 0 0 116 157 73 535 2 394 522 1 2 23 73 200 224 0 g 0 0 179 163 74 2 0 115 2 0 537 3 25 139 95 0 t 0 0 128 77 24 1 1 12 11 538 1 509 435 98 146 0

MA0499.2_shift2 (MYOD1)
; oligos_7nt_mkv4_m33 versus MA0499.2 (MYOD1); m=1/52; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.889459; --cwgCACCTGTymy- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0745.2_shift2 (SNAI2)
; oligos_7nt_mkv4_m33 versus MA0745.2 (SNAI2); m=2/52; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.883764; --aygCACCTGTmry- ; cor=; Ncor= a 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA1620.1_shift2 (Ptf1a(var.3))
; oligos_7nt_mkv4_m33 versus MA1620.1 (Ptf1a(var.3)); m=3/52; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.871202; --rmaCACCTGtky-- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0

MA1621.1_shift1 (Rbpjl)
; oligos_7nt_mkv4_m33 versus MA1621.1 (Rbpjl); m=4/52; ncol2=14; w=13; offset=-1; strand=D; shift=1; score=0.862844; -svmaCACCTGtsyc- ; cor=; Ncor= a 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0

MA0832.1_rc_shift1 (Tcf21_rc)
; oligos_7nt_mkv4_m33 versus MA0832.1_rc (Tcf21_rc); m=5/52; ncol2=14; w=13; offset=-1; strand=R; shift=1; score=0.789857; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA1641.1_rc_shift2 (MYF5_rc)
; oligos_7nt_mkv4_m33 versus MA1641.1_rc (MYF5_rc); m=6/52; ncol2=12; w=12; offset=0; strand=R; shift=2; score=0.785892; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; oligos_7nt_mkv4_m33 versus MA1619.1 (Ptf1a(var.2)); m=7/52; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.776716; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA0830.2_shift2 (TCF4)
; oligos_7nt_mkv4_m33 versus MA0830.2 (TCF4); m=8/52; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.773689; --cggCACCTGccss- ; cor=; Ncor= a 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 c 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 g 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 t 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0

MA1631.1_shift2 (ASCL1(var.2))
; oligos_7nt_mkv4_m33 versus MA1631.1 (ASCL1(var.2)); m=9/52; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.76262; --cdgCACCTGCysc- ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0

MA1105.2_rc_shift3 (GRHL2_rc)
; oligos_7nt_mkv4_m33 versus MA1105.2_rc (GRHL2_rc); m=10/52; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.727165; ---maAACCTGTTyt- ; cor=; Ncor= a 0 0 0 13946.0 17515.0 36906.0 36921.0 625.0 1247.0 5826.0 320.0 1260.0 1618.0 6264.0 8493.0 0 c 0 0 0 10536.0 7961.0 1220.0 748.0 39624.0 37226.0 485.0 609.0 2841.0 2646.0 10776.0 9161.0 0 g 0 0 0 8528.0 9341.0 2000.0 2331.0 987.0 581.0 1543.0 40446.0 712.0 1147.0 6996.0 9741.0 0 t 0 0 0 8868.0 7061.0 1752.0 1878.0 642.0 2824.0 34024.0 503.0 37065.0 36467.0 17842.0 14483.0 0

MA1642.1_rc_shift2 (NEUROG2(var.2)_rc)
; oligos_7nt_mkv4_m33 versus MA1642.1_rc (NEUROG2(var.2)_rc); m=11/52; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.726073; --brCCATCTGtyyy- ; cor=; Ncor= a 0 0 7184.0 9704.0 4904.0 484.0 32515.0 275.0 2806.0 159.0 237.0 1750.0 4721.0 8378.0 7535.0 0 c 0 0 8709.0 7581.0 24998.0 33422.0 323.0 418.0 30392.0 301.0 317.0 8039.0 11114.0 10123.0 10813.0 0 g 0 0 9034.0 10441.0 2966.0 205.0 904.0 952.0 793.0 211.0 33559.0 8154.0 6467.0 6843.0 7353.0 0 t 0 0 9464.0 6665.0 1523.0 280.0 649.0 32746.0 400.0 33720.0 278.0 16448.0 12089.0 9047.0 8690.0 0

MA1618.1_shift2 (Ptf1a)
; oligos_7nt_mkv4_m33 versus MA1618.1 (Ptf1a); m=12/52; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.722411; --dmaCAGATGttkh- ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0

MA1485.1_shift1 (FERD3L)
; oligos_7nt_mkv4_m33 versus MA1485.1 (FERD3L); m=13/52; ncol2=14; w=13; offset=-1; strand=D; shift=1; score=0.721064; -GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0521.1_rc_shift2 (Tcf12_rc)
; oligos_7nt_mkv4_m33 versus MA0521.1_rc (Tcf12_rc); m=14/52; ncol2=11; w=11; offset=0; strand=R; shift=2; score=0.716159; --cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA0500.2_shift2 (MYOG)
; oligos_7nt_mkv4_m33 versus MA0500.2 (MYOG); m=15/52; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.711845; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA0744.2_rc_shift2 (SCRT2_rc)
; oligos_7nt_mkv4_m33 versus MA0744.2_rc (SCRT2_rc); m=16/52; ncol2=16; w=13; offset=0; strand=R; shift=2; score=0.708189; --waccACCTGTTGmw ; cor=; Ncor= a 0 0 21453.0 18751.0 15588.0 11335.0 58889.0 2140.0 1471.0 1184.0 204.0 953.0 4384.0 3732.0 17252.0 16873.0 c 0 0 12430.0 14716.0 25288.0 38133.0 1168.0 60636.0 56105.0 252.0 319.0 1878.0 2265.0 1339.0 35769.0 12473.0 g 0 0 13846.0 16085.0 11351.0 5661.0 3475.0 972.0 728.0 294.0 64856.0 413.0 5536.0 59161.0 7236.0 6319.0 t 0 0 17881.0 16058.0 13383.0 10481.0 2078.0 1862.0 7306.0 63880.0 231.0 62366.0 53425.0 1378.0 5353.0 29945.0

MA0820.1_shift3 (FIGLA)
; oligos_7nt_mkv4_m33 versus MA0820.1 (FIGLA); m=17/52; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.702628; ---wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

MA0743.2_rc_shift2 (SCRT1_rc)
; oligos_7nt_mkv4_m33 versus MA0743.2_rc (SCRT1_rc); m=18/52; ncol2=16; w=13; offset=0; strand=R; shift=2; score=0.702336; --wacCACCTGTTGmw ; cor=; Ncor= a 0 0 19839.0 18454.0 13726.0 7910.0 57969.0 1579.0 1305.0 1058.0 215.0 1002.0 4017.0 2621.0 31975.0 24326.0 c 0 0 11049.0 13470.0 26973.0 41190.0 259.0 56500.0 51330.0 159.0 224.0 1566.0 1835.0 1297.0 16396.0 10154.0 g 0 0 12837.0 14903.0 8788.0 3296.0 1098.0 466.0 557.0 234.0 59557.0 370.0 8751.0 54835.0 7425.0 8693.0 t 0 0 16484.0 13382.0 10722.0 7813.0 883.0 1664.0 7017.0 58758.0 213.0 57271.0 45606.0 1456.0 4413.0 17036.0

MA0665.1_shift3 (MSC)
; oligos_7nt_mkv4_m33 versus MA0665.1 (MSC); m=19/52; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.689114; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0

MA0103.3_shift3 (ZEB1)
; oligos_7nt_mkv4_m33 versus MA0103.3 (ZEB1); m=20/52; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.68764; ---ssCACCTGsss-- ; cor=; Ncor= a 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 c 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 g 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 t 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0

MA1559.1_rc_shift3 (SNAI3_rc)
; oligos_7nt_mkv4_m33 versus MA1559.1_rc (SNAI3_rc); m=21/52; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.684795; ---trCACCTGyt--- ; cor=; Ncor= a 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 c 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 g 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 t 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0

MA0783.1_rc_shift2 (PKNOX2_rc)
; oligos_7nt_mkv4_m33 versus MA0783.1_rc (PKNOX2_rc); m=22/52; ncol2=12; w=12; offset=0; strand=R; shift=2; score=0.681988; --TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 c 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 g 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 t 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0

MA0667.1_shift3 (MYF6)
; oligos_7nt_mkv4_m33 versus MA0667.1 (MYF6); m=23/52; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.68044; ---AACArCTGTY--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; oligos_7nt_mkv4_m33 versus MA1467.1_rc (ATOH1(var.2)_rc); m=24/52; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.668638; ---RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0

MA1558.1_rc_shift3 (SNAI1_rc)
; oligos_7nt_mkv4_m33 versus MA1558.1_rc (SNAI1_rc); m=25/52; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.653495; ---yrCACCTGyh--- ; cor=; Ncor= a 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 c 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 g 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 t 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0

MA0091.1_rc_shift3 (TAL1::TCF3_rc)
; oligos_7nt_mkv4_m33 versus MA0091.1_rc (TAL1::TCF3_rc); m=26/52; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.652871; ---AmCAKMTGkTck- ; cor=; Ncor= a 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 0 c 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 0 g 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 0 t 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0 0

MA0797.1_rc_shift2 (TGIF2_rc)
; oligos_7nt_mkv4_m33 versus MA0797.1_rc (TGIF2_rc); m=27/52; ncol2=12; w=12; offset=0; strand=R; shift=2; score=0.651775; --TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 c 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 g 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 t 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; oligos_7nt_mkv4_m33 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=28/52; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.643875; ---rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0

MA1648.1_shift3 (TCF12(var.2))
; oligos_7nt_mkv4_m33 versus MA1648.1 (TCF12(var.2)); m=29/52; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.641551; ---ssCACCTGCys-- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0

MA0522.3_shift3 (TCF3)
; oligos_7nt_mkv4_m33 versus MA0522.3 (TCF3); m=30/52; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.635607; ---svCACCTGCss-- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0

MA0691.1_rc_shift3 (TFAP4_rc)
; oligos_7nt_mkv4_m33 versus MA0691.1_rc (TFAP4_rc); m=31/52; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.630345; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA1109.1_rc_shift1 (NEUROD1_rc)
; oligos_7nt_mkv4_m33 versus MA1109.1_rc (NEUROD1_rc); m=32/52; ncol2=13; w=12; offset=-1; strand=R; shift=1; score=0.62354; -syrCCATCTGtyc-- ; cor=; Ncor= a 0 525.0 451.0 580.0 168.0 31.0 2157.0 21.0 90.0 18.0 12.0 47.0 298.0 566.0 0 0 c 0 628.0 599.0 418.0 1962.0 2231.0 19.0 77.0 2152.0 16.0 13.0 494.0 906.0 726.0 0 0 g 0 591.0 540.0 911.0 93.0 7.0 51.0 150.0 24.0 7.0 2240.0 452.0 323.0 429.0 0 0 t 0 538.0 692.0 373.0 59.0 13.0 55.0 2034.0 16.0 2241.0 17.0 1289.0 755.0 561.0 0 0

MA0819.1_rc_shift3 (CLOCK_rc)
; oligos_7nt_mkv4_m33 versus MA0819.1_rc (CLOCK_rc); m=33/52; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.605415; ---raCACGTGTt--- ; cor=; Ncor= a 0 0 0 174.0 429.0 9.0 429.0 0.0 28.0 0.0 2.0 13.0 75.0 0 0 0 c 0 0 0 39.0 110.0 429.0 5.0 429.0 0.0 15.0 2.0 89.0 93.0 0 0 0 g 0 0 0 128.0 152.0 3.0 5.0 0.0 429.0 5.0 429.0 85.0 35.0 0 0 0 t 0 0 0 89.0 1.0 0.0 3.0 40.0 16.0 429.0 11.0 429.0 226.0 0 0 0

MA0816.1_shift3 (Ascl2)
; oligos_7nt_mkv4_m33 versus MA0816.1 (Ascl2); m=34/52; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.602889; ---arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA1570.1_rc_shift3 (TFAP4(var.2)_rc)
; oligos_7nt_mkv4_m33 versus MA1570.1_rc (TFAP4(var.2)_rc); m=35/52; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.595813; ---amCAyrTGdt--- ; cor=; Ncor= a 0 0 0 479.0 206.0 0.0 479.0 0.0 479.0 0.0 0.0 129.0 39.0 0 0 0 c 0 0 0 110.0 156.0 479.0 0.0 287.0 161.0 14.0 0.0 0.0 197.0 0 0 0 g 0 0 0 210.0 14.0 3.0 0.0 149.0 220.0 0.0 479.0 144.0 130.0 0 0 0 t 0 0 0 60.0 103.0 0.0 0.0 479.0 0.0 479.0 0.0 217.0 479.0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; oligos_7nt_mkv4_m33 versus MA1100.2_rc (ASCL1_rc); m=36/52; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.592505; ---rgCAGCTGyy--- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0

MA1635.1_rc_shift3 (BHLHE22(var.2)_rc)
; oligos_7nt_mkv4_m33 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=37/52; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.566359; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA1638.1_rc_shift3 (HAND2_rc)
; oligos_7nt_mkv4_m33 versus MA1638.1_rc (HAND2_rc); m=38/52; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.557855; ---rvCATCTGkt--- ; cor=; Ncor= a 0 0 0 7783.0 8498.0 49.0 27962.0 23.0 85.0 4.0 70.0 3155.0 7120.0 0 0 0 c 0 0 0 6108.0 8878.0 29851.0 31.0 38.0 30144.0 647.0 132.0 6994.0 7463.0 0 0 0 g 0 0 0 10227.0 7690.0 149.0 2276.0 30.0 42.0 410.0 30062.0 11298.0 5564.0 0 0 0 t 0 0 0 6165.0 5217.0 234.0 14.0 30192.0 12.0 29222.0 19.0 8836.0 10136.0 0 0 0

MA0807.1_rc_shift2 (TBX5_rc)
; oligos_7nt_mkv4_m33 versus MA0807.1_rc (TBX5_rc); m=39/52; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.548841; --TmACACCT------ ; cor=; Ncor= a 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 c 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 g 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 t 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0

MA0100.3_shift3 (MYB)
; oligos_7nt_mkv4_m33 versus MA0100.3 (MYB); m=40/52; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.544293; ---mbCAACTGhm--- ; cor=; Ncor= a 0 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 0 c 0 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 0 g 0 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 0 t 0 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0 0

MA0806.1_rc_shift2 (TBX4_rc)
; oligos_7nt_mkv4_m33 versus MA0806.1_rc (TBX4_rc); m=41/52; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.542124; --TcACACCT------ ; cor=; Ncor= a 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 0 0 c 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 0 0 g 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 0 0 t 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0 0 0

MA0803.1_rc_shift2 (TBX15_rc)
; oligos_7nt_mkv4_m33 versus MA0803.1_rc (TBX15_rc); m=42/52; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.527894; --TCACACCT------ ; cor=; Ncor= a 0 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 0 0 0 0 0 c 0 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 0 0 0 0 0 g 0 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 0 0 0 0 0 t 0 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0 0 0 0 0 0

MA0805.1_rc_shift2 (TBX1_rc)
; oligos_7nt_mkv4_m33 versus MA0805.1_rc (TBX1_rc); m=43/52; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.515633; --TCACACCT------ ; cor=; Ncor= a 0 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 0 0 0 c 0 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 0 0 0 g 0 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 0 0 0 t 0 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0 0 0 0

MA0801.1_rc_shift2 (MGA_rc)
; oligos_7nt_mkv4_m33 versus MA0801.1_rc (MGA_rc); m=44/52; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.504011; --TCACACCT------ ; cor=; Ncor= a 0 0 274.0 6465.0 30489.0 11.0 30489.0 104.0 1929.0 4160.0 0 0 0 0 0 0 c 0 0 920.0 30489.0 381.0 30489.0 96.0 30489.0 30489.0 8873.0 0 0 0 0 0 0 g 0 0 110.0 1753.0 3089.0 1.0 3534.0 509.0 3737.0 1151.0 0 0 0 0 0 0 t 0 0 30489.0 689.0 1042.0 14.0 12.0 16.0 4310.0 30489.0 0 0 0 0 0 0

MA1567.1_rc_shift1 (TBX6_rc)
; oligos_7nt_mkv4_m33 versus MA1567.1_rc (TBX6_rc); m=45/52; ncol2=10; w=9; offset=-1; strand=R; shift=1; score=0.486987; -tTmACACcty----- ; cor=; Ncor= a 0 2330.0 713.0 5964.0 11087.0 12.0 11087.0 0.0 1058.0 2157.0 2456.0 0 0 0 0 0 c 0 2141.0 2251.0 11087.0 320.0 11087.0 0.0 11087.0 11087.0 3347.0 4003.0 0 0 0 0 0 g 0 2066.0 652.0 4876.0 3053.0 0.0 1002.0 63.0 2913.0 1173.0 1630.0 0 0 0 0 0 t 0 4550.0 11087.0 1430.0 552.0 14.0 44.0 58.0 1882.0 11087.0 2998.0 0 0 0 0 0

MA1566.1_rc_shift1 (TBX3_rc)
; oligos_7nt_mkv4_m33 versus MA1566.1_rc (TBX3_rc); m=46/52; ncol2=10; w=9; offset=-1; strand=R; shift=1; score=0.478491; -ttsACACcty----- ; cor=; Ncor= a 0 578.0 484.0 1112.0 2544.0 0.0 2544.0 0.0 302.0 760.0 497.0 0 0 0 0 0 c 0 620.0 947.0 2544.0 155.0 2544.0 0.0 2544.0 2544.0 1207.0 1003.0 0 0 0 0 0 g 0 586.0 410.0 1471.0 634.0 0.0 735.0 45.0 862.0 481.0 399.0 0 0 0 0 0 t 0 760.0 2544.0 170.0 115.0 0.0 16.0 6.0 427.0 2544.0 644.0 0 0 0 0 0

MA0690.1_rc_shift1 (TBX21_rc)
; oligos_7nt_mkv4_m33 versus MA0690.1_rc (TBX21_rc); m=47/52; ncol2=10; w=9; offset=-1; strand=R; shift=1; score=0.454751; -TTCACACCTt----- ; cor=; Ncor= a 0 1287.0 0.0 364.0 4395.0 2.0 4395.0 33.0 398.0 146.0 872.0 0 0 0 0 0 c 0 317.0 38.0 4395.0 34.0 4395.0 16.0 4395.0 4395.0 359.0 937.0 0 0 0 0 0 g 0 441.0 0.0 126.0 331.0 0.0 180.0 17.0 239.0 30.0 263.0 0 0 0 0 0 t 0 4395.0 4395.0 80.0 185.0 1.0 6.0 2.0 612.0 4395.0 2322.0 0 0 0 0 0

MA0802.1_rc_shift0 (TBR1_rc)
; oligos_7nt_mkv4_m33 versus MA0802.1_rc (TBR1_rc); m=48/52; ncol2=10; w=8; offset=-2; strand=R; shift=0; score=0.447835; tTTCACACCT------ ; cor=; Ncor= a 5846.0 4576.0 205.0 7001.0 34509.0 4.0 34509.0 213.0 4480.0 1433.0 0 0 0 0 0 0 c 4537.0 1488.0 584.0 34509.0 157.0 34509.0 88.0 34509.0 34509.0 3329.0 0 0 0 0 0 0 g 5619.0 2575.0 90.0 2551.0 4742.0 6.0 1759.0 254.0 3255.0 359.0 0 0 0 0 0 0 t 18507.0 25869.0 34509.0 1175.0 2386.0 0.0 39.0 70.0 6880.0 34509.0 0 0 0 0 0 0

MA0688.1_rc_shift0 (TBX2_rc)
; oligos_7nt_mkv4_m33 versus MA0688.1_rc (TBX2_rc); m=49/52; ncol2=11; w=9; offset=-2; strand=R; shift=0; score=0.442887; ttTcACACCTw----- ; cor=; Ncor= a 667.0 656.0 120.0 1409.0 3181.0 12.0 3181.0 14.0 353.0 442.0 804.0 0 0 0 0 0 c 590.0 527.0 125.0 3181.0 27.0 3181.0 21.0 3181.0 3181.0 716.0 717.0 0 0 0 0 0 g 446.0 491.0 26.0 1289.0 392.0 0.0 329.0 36.0 519.0 59.0 402.0 0 0 0 0 0 t 1477.0 2525.0 3181.0 310.0 307.0 26.0 0.0 9.0 602.0 3181.0 1258.0 0 0 0 0 0

MA1647.1_shift6 (PRDM4)
; oligos_7nt_mkv4_m33 versus MA1647.1 (PRDM4); m=50/52; ncol2=11; w=9; offset=4; strand=D; shift=6; score=0.427983; ------rdCTGTTTCw ; cor=; Ncor= a 0 0 0 0 0 0 1980.0 2041.0 281.0 860.0 293.0 147.0 169.0 195.0 481.0 2111.0 c 0 0 0 0 0 0 1163.0 1012.0 6504.0 286.0 110.0 137.0 405.0 138.0 6353.0 1456.0 g 0 0 0 0 0 0 2553.0 2079.0 316.0 566.0 6813.0 82.0 393.0 111.0 129.0 726.0 t 0 0 0 0 0 0 1559.0 2123.0 154.0 5543.0 39.0 6889.0 6288.0 6811.0 292.0 2962.0

MA0689.1_rc_shift0 (TBX20_rc)
; oligos_7nt_mkv4_m33 versus MA0689.1_rc (TBX20_rc); m=51/52; ncol2=11; w=9; offset=-2; strand=R; shift=0; score=0.42542; yTTCACACCTw----- ; cor=; Ncor= a 59.0 170.0 10.0 82.0 572.0 4.0 572.0 40.0 26.0 24.0 250.0 0 0 0 0 0 c 300.0 53.0 6.0 572.0 11.0 572.0 10.0 572.0 572.0 54.0 121.0 0 0 0 0 0 g 60.0 16.0 1.0 10.0 1.0 1.0 0.0 0.0 34.0 23.0 4.0 0 0 0 0 0 t 154.0 572.0 572.0 48.0 8.0 0.0 0.0 0.0 50.0 572.0 197.0 0 0 0 0 0

MA0480.1_shift6 (Foxo1)
; oligos_7nt_mkv4_m33 versus MA0480.1 (Foxo1); m=52/52; ncol2=11; w=9; offset=4; strand=D; shift=6; score=0.422019; ------tsyTGTTTAC ; cor=; Ncor= a 0 0 0 0 0 0 468.0 127.0 87.0 0.0 0.0 0.0 0.0 0.0 1871.0 0.0 c 0 0 0 0 0 0 277.0 1279.0 1406.0 0.0 0.0 0.0 0.0 0.0 157.0 2007.0 g 0 0 0 0 0 0 478.0 752.0 209.0 0.0 2490.0 0.0 0.0 287.0 0.0 0.0 t 0 0 0 0 0 0 1267.0 332.0 788.0 2490.0 0.0 2490.0 2490.0 2203.0 462.0 483.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m23_shift5 ; 44 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m23_shift5 (oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23)
; oligos_6nt_mkv3_m23 (oligos_6nt_mkv3_m23oligos_6nt_mkv3_m23); m=0 (reference); ncol1=10; shift=5; ncol=16; -----gmCAAGTGks- ; Alignment reference a 0 0 0 0 0 99 128 0 441 441 0 0 0 83 71 0 c 0 0 0 0 0 110 127 441 0 0 0 0 0 102 151 0 g 0 0 0 0 0 150 104 0 0 0 441 0 441 122 124 0 t 0 0 0 0 0 82 82 0 0 0 0 441 0 134 95 0

MA0672.1_rc_shift5 (NKX2-3_rc)
; oligos_6nt_mkv3_m23 versus MA0672.1_rc (NKX2-3_rc); m=1/43; ncol2=10; w=10; offset=0; strand=R; shift=5; score=0.882701; -----btyAAGTGst- ; cor=; Ncor= a 0 0 0 0 0 566.0 2437.0 343.0 9278.0 9278.0 0.0 250.0 132.0 140.0 1535.0 0 c 0 0 0 0 0 2788.0 1831.0 5037.0 0.0 18.0 0.0 16.0 0.0 4499.0 1989.0 0 g 0 0 0 0 0 2754.0 917.0 1451.0 939.0 0.0 9278.0 98.0 9278.0 9278.0 2182.0 0 t 0 0 0 0 0 3170.0 9278.0 4241.0 0.0 0.0 8.0 9278.0 38.0 2025.0 3572.0 0

MA0673.1_rc_shift5 (NKX2-8_rc)
; oligos_6nt_mkv3_m23 versus MA0673.1_rc (NKX2-8_rc); m=2/43; ncol2=9; w=9; offset=0; strand=R; shift=5; score=0.784267; -----yTsRAGTGs-- ; cor=; Ncor= a 0 0 0 0 0 811.0 2158.0 271.0 8562.0 8562.0 110.0 516.0 2155.0 249.0 0 0 c 0 0 0 0 0 2593.0 696.0 4286.0 0.0 0.0 0.0 0.0 0.0 2843.0 0 0 g 0 0 0 0 0 1964.0 908.0 2267.0 3197.0 91.0 8562.0 595.0 8562.0 3529.0 0 0 t 0 0 0 0 0 3194.0 8562.0 1738.0 23.0 0.0 14.0 8562.0 70.0 1942.0 0 0

MA1108.2_rc_shift5 (MXI1_rc)
; oligos_6nt_mkv3_m23 versus MA1108.2_rc (MXI1_rc); m=3/43; ncol2=10; w=10; offset=0; strand=R; shift=5; score=0.782366; -----gmCATGTGby- ; cor=; Ncor= a 0 0 0 0 0 5366.0 6658.0 175.0 21541.0 0.0 468.0 7.0 460.0 3945.0 5212.0 0 c 0 0 0 0 0 5394.0 7228.0 21232.0 0.0 1542.0 18.0 170.0 97.0 6078.0 6326.0 0 g 0 0 0 0 0 6343.0 5329.0 114.0 507.0 0.0 21552.0 1.0 21382.0 5841.0 4724.0 0 t 0 0 0 0 0 4945.0 2833.0 527.0 0.0 20506.0 10.0 21870.0 109.0 6184.0 5786.0 0

MA0626.1_shift5 (Npas2)
; oligos_6nt_mkv3_m23 versus MA0626.1 (Npas2); m=4/43; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.782323; -----dsCACGTGtm- ; cor=; Ncor= a 0 0 0 0 0 273.0 154.0 0.0 999.0 81.0 81.0 0.0 81.0 74.0 297.0 0 c 0 0 0 0 0 177.0 377.0 999.0 0.0 918.0 0.0 0.0 0.0 172.0 299.0 0 g 0 0 0 0 0 293.0 420.0 0.0 0.0 0.0 918.0 0.0 918.0 188.0 202.0 0 t 0 0 0 0 0 257.0 48.0 0.0 0.0 0.0 0.0 999.0 0.0 566.0 202.0 0

MA1558.1_shift5 (SNAI1)
; oligos_6nt_mkv3_m23 versus MA1558.1 (SNAI1); m=5/43; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.779216; -----drCAGGTGyr- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0

MA0058.3_rc_shift5 (MAX_rc)
; oligos_6nt_mkv3_m23 versus MA0058.3_rc (MAX_rc); m=6/43; ncol2=10; w=10; offset=0; strand=R; shift=5; score=0.767058; -----rgCACGTGkt- ; cor=; Ncor= a 0 0 0 0 0 2543.0 1446.0 36.0 6876.0 19.0 229.0 38.0 0.0 637.0 719.0 0 c 0 0 0 0 0 986.0 1638.0 6876.0 20.0 6876.0 7.0 87.0 0.0 1514.0 1295.0 0 g 0 0 0 0 0 2225.0 2450.0 27.0 159.0 39.0 6876.0 0.0 6876.0 2809.0 1556.0 0 t 0 0 0 0 0 1122.0 1341.0 0.0 69.0 329.0 0.0 6876.0 39.0 1915.0 3307.0 0

MA0825.1_shift5 (MNT)
; oligos_6nt_mkv3_m23 versus MA0825.1 (MNT); m=7/43; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.760293; -----avCACGTGcy- ; cor=; Ncor= a 0 0 0 0 0 279.0 187.0 27.0 681.0 0.0 15.0 0.0 0.0 150.0 159.0 0 c 0 0 0 0 0 128.0 228.0 681.0 0.0 681.0 0.0 0.0 0.0 281.0 229.0 0 g 0 0 0 0 0 145.0 203.0 0.0 0.0 7.0 681.0 15.0 681.0 131.0 75.0 0 t 0 0 0 0 0 129.0 63.0 5.0 21.0 16.0 0.0 681.0 25.0 120.0 219.0 0

MA0100.3_shift5 (MYB)
; oligos_6nt_mkv3_m23 versus MA0100.3 (MYB); m=8/43; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.758936; -----mbCAACTGhm- ; cor=; Ncor= a 0 0 0 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 c 0 0 0 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 g 0 0 0 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 t 0 0 0 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0

MA0820.1_rc_shift5 (FIGLA_rc)
; oligos_6nt_mkv3_m23 versus MA0820.1_rc (FIGLA_rc); m=9/43; ncol2=10; w=10; offset=0; strand=R; shift=5; score=0.741325; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0

MA0819.1_shift5 (CLOCK)
; oligos_6nt_mkv3_m23 versus MA0819.1 (CLOCK); m=10/43; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.74028; -----aACACGTGty- ; cor=; Ncor= a 0 0 0 0 0 226.0 429.0 11.0 429.0 16.0 40.0 3.0 0.0 1.0 89.0 0 c 0 0 0 0 0 35.0 85.0 429.0 5.0 429.0 0.0 5.0 3.0 152.0 128.0 0 g 0 0 0 0 0 93.0 89.0 2.0 15.0 0.0 429.0 5.0 429.0 110.0 39.0 0 t 0 0 0 0 0 75.0 13.0 2.0 0.0 28.0 0.0 429.0 9.0 429.0 174.0 0

MA0823.1_rc_shift5 (HEY1_rc)
; oligos_6nt_mkv3_m23 versus MA0823.1_rc (HEY1_rc); m=11/43; ncol2=10; w=10; offset=0; strand=R; shift=5; score=0.740158; -----grCACGTGyc- ; cor=; Ncor= a 0 0 0 0 0 318.0 863.0 22.0 3338.0 0.0 0.0 21.0 15.0 110.0 352.0 0 c 0 0 0 0 0 373.0 380.0 3338.0 10.0 3338.0 0.0 123.0 3.0 1199.0 1788.0 0 g 0 0 0 0 0 2172.0 1762.0 19.0 474.0 18.0 3338.0 30.0 3338.0 656.0 761.0 0 t 0 0 0 0 0 475.0 333.0 32.0 0.0 0.0 0.0 3338.0 1.0 1373.0 437.0 0

MA0692.1_rc_shift5 (TFEB_rc)
; oligos_6nt_mkv3_m23 versus MA0692.1_rc (TFEB_rc); m=12/43; ncol2=10; w=10; offset=0; strand=R; shift=5; score=0.733523; -----rTCACGTGry- ; cor=; Ncor= a 0 0 0 0 0 2826.0 807.0 11.0 8715.0 5.0 1155.0 274.0 3.0 8715.0 343.0 0 c 0 0 0 0 0 558.0 872.0 8715.0 150.0 8715.0 83.0 62.0 0.0 2731.0 3748.0 0 g 0 0 0 0 0 5889.0 2342.0 10.0 169.0 288.0 8715.0 286.0 8715.0 4936.0 1553.0 0 t 0 0 0 0 0 283.0 8715.0 9.0 454.0 2762.0 0.0 8715.0 17.0 2545.0 4967.0 0

MA1464.1_shift5 (ARNT2)
; oligos_6nt_mkv3_m23 versus MA1464.1 (ARNT2); m=13/43; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.729157; -----rtCACGTGms- ; cor=; Ncor= a 0 0 0 0 0 11781.0 9572.0 505.0 40622.0 0.0 84.0 651.0 14.0 18559.0 7892.0 0 c 0 0 0 0 0 4265.0 4901.0 40622.0 122.0 40622.0 0.0 932.0 0.0 22063.0 12448.0 0 g 0 0 0 0 0 28841.0 9525.0 115.0 532.0 0.0 40622.0 111.0 40622.0 3912.0 12031.0 0 t 0 0 0 0 0 1951.0 40622.0 0.0 460.0 148.0 0.0 40622.0 971.0 7159.0 8251.0 0

MA0464.2_rc_shift5 (BHLHE40_rc)
; oligos_6nt_mkv3_m23 versus MA0464.2_rc (BHLHE40_rc); m=14/43; ncol2=10; w=10; offset=0; strand=R; shift=5; score=0.727516; -----gkCACGTGmb- ; cor=; Ncor= a 0 0 0 0 0 2587.0 500.0 72.0 11222.0 0.0 32.0 77.0 14.0 6222.0 1447.0 0 c 0 0 0 0 0 1385.0 129.0 11222.0 87.0 11222.0 2.0 78.0 0.0 5000.0 2926.0 0 g 0 0 0 0 0 5706.0 5295.0 12.0 248.0 30.0 11222.0 130.0 11222.0 481.0 3025.0 0 t 0 0 0 0 0 1544.0 5927.0 4.0 167.0 66.0 23.0 11222.0 59.0 1391.0 3824.0 0

MA0649.1_rc_shift5 (HEY2_rc)
; oligos_6nt_mkv3_m23 versus MA0649.1_rc (HEY2_rc); m=15/43; ncol2=10; w=10; offset=0; strand=R; shift=5; score=0.724964; -----grCACGTGyC- ; cor=; Ncor= a 0 0 0 0 0 264.0 753.0 30.0 1800.0 0.0 0.0 0.0 58.0 224.0 101.0 0 c 0 0 0 0 0 382.0 128.0 1800.0 0.0 1800.0 0.0 128.0 83.0 620.0 1800.0 0 g 0 0 0 0 0 869.0 1047.0 34.0 120.0 72.0 1800.0 0.0 1800.0 305.0 99.0 0 t 0 0 0 0 0 285.0 50.0 0.0 36.0 27.0 7.0 1800.0 84.0 651.0 107.0 0

MA1559.1_shift5 (SNAI3)
; oligos_6nt_mkv3_m23 versus MA1559.1 (SNAI3); m=16/43; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.722652; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0

MA0664.1_shift5 (MLXIPL)
; oligos_6nt_mkv3_m23 versus MA0664.1 (MLXIPL); m=17/43; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.717798; -----rtCACGTGat- ; cor=; Ncor= a 0 0 0 0 0 345.0 126.0 0.0 411.0 2.0 20.0 0.0 0.0 356.0 138.0 0 c 0 0 0 0 0 31.0 28.0 448.0 0.0 452.0 2.0 0.0 0.0 110.0 181.0 0 g 0 0 0 0 0 220.0 133.0 11.0 2.0 12.0 735.0 3.0 727.0 87.0 53.0 0 t 0 0 0 0 0 113.0 468.0 0.0 5.0 0.0 0.0 562.0 0.0 113.0 442.0 0

MA1560.1_rc_shift5 (SOHLH2_rc)
; oligos_6nt_mkv3_m23 versus MA1560.1_rc (SOHLH2_rc); m=18/43; ncol2=10; w=10; offset=0; strand=R; shift=5; score=0.715086; -----ygCACGTGcr- ; cor=; Ncor= a 0 0 0 0 0 224.0 153.0 4.0 1212.0 15.0 7.0 0.0 70.0 276.0 313.0 0 c 0 0 0 0 0 369.0 172.0 1212.0 0.0 1212.0 11.0 41.0 29.0 1212.0 184.0 0 g 0 0 0 0 0 239.0 1212.0 4.0 65.0 0.0 1212.0 0.0 1212.0 264.0 485.0 0 t 0 0 0 0 0 381.0 272.0 41.0 36.0 14.0 0.0 1212.0 45.0 172.0 230.0 0

MA0616.2_shift5 (HES2)
; oligos_6nt_mkv3_m23 versus MA0616.2 (HES2); m=19/43; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.700628; -----GgCACGTGyc- ; cor=; Ncor= a 0 0 0 0 0 775.0 1501.0 118.0 6455.0 0.0 0.0 0.0 53.0 512.0 966.0 0 c 0 0 0 0 0 1193.0 1107.0 8483.0 0.0 8483.0 0.0 1098.0 15.0 4634.0 4464.0 0 g 0 0 0 0 0 8483.0 8483.0 85.0 2028.0 0.0 8483.0 0.0 8483.0 1289.0 1735.0 0 t 0 0 0 0 0 798.0 1581.0 73.0 0.0 129.0 0.0 8483.0 0.0 3849.0 1319.0 0

MA0103.3_rc_shift4 (ZEB1_rc)
; oligos_6nt_mkv3_m23 versus MA0103.3_rc (ZEB1_rc); m=20/43; ncol2=11; w=10; offset=-1; strand=R; shift=4; score=0.698169; ----sssCAGGTGss- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0

MA0124.2_rc_shift6 (Nkx3-1_rc)
; oligos_6nt_mkv3_m23 versus MA0124.2_rc (Nkx3-1_rc); m=21/43; ncol2=9; w=9; offset=1; strand=R; shift=6; score=0.687301; ------tTAAGTGgy- ; cor=; Ncor= a 0 0 0 0 0 0 1509.0 523.0 5335.0 5335.0 9.0 88.0 336.0 275.0 544.0 0 c 0 0 0 0 0 0 2132.0 173.0 0.0 0.0 9.0 10.0 10.0 1776.0 1361.0 0 g 0 0 0 0 0 0 1407.0 273.0 254.0 1.0 5335.0 28.0 5335.0 5335.0 991.0 0 t 0 0 0 0 0 0 5335.0 5335.0 0.0 0.0 59.0 5335.0 0.0 981.0 2438.0 0

MA0522.3_rc_shift4 (TCF3_rc)
; oligos_6nt_mkv3_m23 versus MA0522.3_rc (TCF3_rc); m=22/43; ncol2=11; w=10; offset=-1; strand=R; shift=4; score=0.652244; ----ssGCAGGTGbs- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0

MA0608.1_shift5 (Creb3l2)
; oligos_6nt_mkv3_m23 versus MA0608.1 (Creb3l2); m=23/43; ncol2=9; w=9; offset=0; strand=D; shift=5; score=0.645647; -----KmCACGTGd-- ; cor=; Ncor= a 0 0 0 0 0 2.0 250.0 1.0 996.0 1.0 1.0 1.0 1.0 250.0 0 0 c 0 0 0 0 0 2.0 623.0 872.0 1.0 996.0 1.0 1.0 143.0 2.0 0 0 g 0 0 0 0 0 745.0 1.0 126.0 1.0 1.0 996.0 1.0 854.0 250.0 0 0 t 0 0 0 0 0 250.0 126.0 1.0 1.0 1.0 1.0 996.0 1.0 498.0 0 0

MA1648.1_rc_shift4 (TCF12(var.2)_rc)
; oligos_6nt_mkv3_m23 versus MA1648.1_rc (TCF12(var.2)_rc); m=24/43; ncol2=11; w=10; offset=-1; strand=R; shift=4; score=0.643719; ----srGCAGGTGss- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; oligos_6nt_mkv3_m23 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=25/43; ncol2=12; w=10; offset=-1; strand=R; shift=4; score=0.619146; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0

MA0147.3_shift4 (MYC)
; oligos_6nt_mkv3_m23 versus MA0147.3 (MYC); m=26/43; ncol2=12; w=10; offset=-1; strand=D; shift=4; score=0.617556; ----ssCCACGTGcys ; cor=; Ncor= a 0 0 0 0 1038.0 1019.0 438.0 44.0 4600.0 54.0 169.0 59.0 23.0 419.0 961.0 755.0 c 0 0 0 0 1345.0 1287.0 3746.0 4840.0 59.0 4525.0 157.0 162.0 56.0 2801.0 1524.0 1785.0 g 0 0 0 0 1649.0 1757.0 472.0 31.0 170.0 70.0 4578.0 63.0 4817.0 1198.0 1036.0 1348.0 t 0 0 0 0 910.0 879.0 286.0 27.0 113.0 293.0 38.0 4658.0 46.0 524.0 1421.0 1054.0

MA0622.1_shift6 (Mlxip)
; oligos_6nt_mkv3_m23 versus MA0622.1 (Mlxip); m=27/43; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.611569; ------bCACGTGk-- ; cor=; Ncor= a 0 0 0 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 0 0 c 0 0 0 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 0 0 g 0 0 0 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 0 0 t 0 0 0 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0 0 0

MA0104.4_shift4 (MYCN)
; oligos_6nt_mkv3_m23 versus MA0104.4 (MYCN); m=28/43; ncol2=12; w=10; offset=-1; strand=D; shift=4; score=0.603094; ----sgCCACGTGGcs ; cor=; Ncor= a 0 0 0 0 1488.0 1734.0 480.0 34.0 6369.0 22.0 323.0 274.0 7.0 420.0 1101.0 1148.0 c 0 0 0 0 1894.0 1550.0 5341.0 6929.0 56.0 6517.0 122.0 285.0 14.0 743.0 2599.0 2454.0 g 0 0 0 0 2454.0 2599.0 743.0 14.0 285.0 122.0 6517.0 56.0 6929.0 5341.0 1550.0 1894.0 t 0 0 0 0 1148.0 1101.0 420.0 7.0 274.0 323.0 22.0 6369.0 34.0 480.0 1734.0 1488.0

MA1524.1_shift4 (MSGN1)
; oligos_6nt_mkv3_m23 versus MA1524.1 (MSGN1); m=29/43; ncol2=12; w=10; offset=-1; strand=D; shift=4; score=0.598727; ----srCCAwwTGkys ; cor=; Ncor= a 0 0 0 0 1190.0 3096.0 663.0 0.0 6373.0 2424.0 3766.0 10.0 0.0 412.0 514.0 1388.0 c 0 0 0 0 2080.0 576.0 6373.0 6373.0 0.0 627.0 190.0 287.0 10.0 1132.0 3269.0 1976.0 g 0 0 0 0 1615.0 3277.0 1613.0 17.0 374.0 112.0 814.0 17.0 6373.0 3104.0 1503.0 1781.0 t 0 0 0 0 1488.0 408.0 726.0 0.0 0.0 3950.0 2607.0 6373.0 0.0 3269.0 3104.0 1228.0

MA0603.1_rc_shift6 (Arntl_rc)
; oligos_6nt_mkv3_m23 versus MA0603.1_rc (Arntl_rc); m=30/43; ncol2=10; w=9; offset=1; strand=R; shift=6; score=0.588443; ------dCACGTGAch ; cor=; Ncor= a 0 0 0 0 0 0 268.0 48.0 837.0 3.0 24.0 21.0 0.0 752.0 71.0 259.0 c 0 0 0 0 0 0 146.0 938.0 51.0 946.0 9.0 10.0 0.0 143.0 558.0 261.0 g 0 0 0 0 0 0 331.0 4.0 58.0 3.0 965.0 16.0 997.0 44.0 125.0 229.0 t 0 0 0 0 0 0 255.0 9.0 54.0 48.0 2.0 953.0 3.0 62.0 246.0 251.0

MA0914.1_rc_shift6 (ISL2_rc)
; oligos_6nt_mkv3_m23 versus MA0914.1_rc (ISL2_rc); m=31/43; ncol2=8; w=8; offset=1; strand=R; shift=6; score=0.570029; ------yTAAkTGc-- ; cor=; Ncor= a 0 0 0 0 0 0 1508.0 1354.0 5631.0 5631.0 398.0 248.0 1019.0 1102.0 0 0 c 0 0 0 0 0 0 3258.0 59.0 13.0 169.0 171.0 134.0 126.0 5631.0 0 0 g 0 0 0 0 0 0 1231.0 206.0 718.0 130.0 5631.0 162.0 5631.0 2616.0 0 0 t 0 0 0 0 0 0 5631.0 5631.0 278.0 218.0 3161.0 5631.0 160.0 1585.0 0 0

MA0122.3_rc_shift5 (Nkx3-2_rc)
; oligos_6nt_mkv3_m23 versus MA0122.3_rc (Nkx3-2_rc); m=32/43; ncol2=13; w=10; offset=0; strand=R; shift=5; score=0.566964; -----wtTAAGTGktt ; cor=; Ncor= a 0 0 0 0 0 2890.0 2241.0 325.0 9919.0 10109.0 94.0 212.0 218.0 1033.0 2359.0 2088.0 c 0 0 0 0 0 1850.0 1368.0 68.0 68.0 29.0 10.0 19.0 23.0 1504.0 1154.0 1466.0 g 0 0 0 0 0 2083.0 991.0 147.0 138.0 32.0 9965.0 82.0 9900.0 5079.0 1109.0 952.0 t 0 0 0 0 0 3397.0 5620.0 9680.0 95.0 50.0 151.0 9907.0 79.0 2604.0 5598.0 5714.0

MA0831.2_shift7 (TFE3)
; oligos_6nt_mkv3_m23 versus MA0831.2 (TFE3); m=33/43; ncol2=8; w=8; offset=2; strand=D; shift=7; score=0.564213; -------CACGTGAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 1.0 719.0 1.0 129.0 4.0 1.0 815.0 3.0 0 c 0 0 0 0 0 0 0 996.0 34.0 830.0 9.0 4.0 1.0 77.0 522.0 0 g 0 0 0 0 0 0 0 1.0 109.0 5.0 861.0 4.0 997.0 70.0 37.0 0 t 0 0 0 0 0 0 0 1.0 138.0 164.0 1.0 988.0 1.0 38.0 438.0 0

MA0830.2_rc_shift3 (TCF4_rc)
; oligos_6nt_mkv3_m23 versus MA0830.2_rc (TCF4_rc); m=34/43; ncol2=13; w=10; offset=-2; strand=R; shift=3; score=0.562819; ---ssggCAGGTGccg ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0

MA0745.2_rc_shift3 (SNAI2_rc)
; oligos_6nt_mkv3_m23 versus MA0745.2_rc (SNAI2_rc); m=35/43; ncol2=13; w=10; offset=-2; strand=R; shift=3; score=0.561196; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0

MA1631.1_rc_shift3 (ASCL1(var.2)_rc)
; oligos_6nt_mkv3_m23 versus MA1631.1_rc (ASCL1(var.2)_rc); m=36/43; ncol2=13; w=10; offset=-2; strand=R; shift=3; score=0.54503; ---gsrGCAGGTGchg ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0

MA1621.1_rc_shift3 (Rbpjl_rc)
; oligos_6nt_mkv3_m23 versus MA1621.1_rc (Rbpjl_rc); m=37/43; ncol2=14; w=10; offset=-2; strand=R; shift=3; score=0.537465; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0

MA0526.3_shift3 (USF2)
; oligos_6nt_mkv3_m23 versus MA0526.3 (USF2); m=38/43; ncol2=14; w=10; offset=-2; strand=D; shift=3; score=0.505137; ---krGtCAyGTGACy ; cor=; Ncor= a 0 0 0 9447.0 10547.0 6562.0 2754.0 365.0 36933.0 312.0 1744.0 357.0 336.0 31293.0 1448.0 7698.0 c 0 0 0 7703.0 5509.0 3199.0 6524.0 36957.0 546.0 10979.0 788.0 198.0 560.0 2132.0 28475.0 13806.0 g 0 0 0 9957.0 14329.0 26611.0 3097.0 525.0 329.0 1910.0 35413.0 498.0 36978.0 3248.0 2401.0 4691.0 t 0 0 0 11111.0 7833.0 1846.0 25843.0 371.0 410.0 25017.0 273.0 37165.0 344.0 1545.0 5894.0 12023.0

MA0806.1_shift8 (TBX4)
; oligos_6nt_mkv3_m23 versus MA0806.1 (TBX4); m=39/43; ncol2=8; w=7; offset=3; strand=D; shift=8; score=0.472174; --------AGGTGTgA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0

MA0807.1_shift8 (TBX5)
; oligos_6nt_mkv3_m23 versus MA0807.1 (TBX5); m=40/43; ncol2=8; w=7; offset=3; strand=D; shift=8; score=0.458635; --------AGGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0

MA0004.1_shift7 (Arnt)
; oligos_6nt_mkv3_m23 versus MA0004.1 (Arnt); m=41/43; ncol2=6; w=6; offset=2; strand=D; shift=7; score=0.454812; -------CACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 0 4.0 19.0 0.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0 0 0 0 16.0 0.0 20.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0 0 0 0 0.0 1.0 0.0 20.0 0.0 20.0 0 0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 20.0 0.0 0 0 0

MA0743.2_shift0 (SCRT1)
; oligos_6nt_mkv3_m23 versus MA0743.2 (SCRT1); m=42/43; ncol2=16; w=10; offset=-5; strand=D; shift=0; score=0.438605; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0

MA0161.2_rc_shift2 (NFIC_rc)
; oligos_6nt_mkv3_m23 versus MA0161.2_rc (NFIC_rc); m=43/43; ncol2=11; w=8; offset=-3; strand=R; shift=2; score=0.433471; --tsTGCCAAGwa--- ; cor=; Ncor= a 0 0 2791.0 2844.0 574.0 530.0 290.0 81.0 10745.0 10781.0 324.0 3488.0 3867.0 0 0 0 c 0 0 2760.0 3186.0 478.0 88.0 10973.0 11087.0 177.0 369.0 329.0 2086.0 2478.0 0 0 0 g 0 0 2712.0 2951.0 397.0 10725.0 121.0 129.0 333.0 303.0 10542.0 2137.0 2647.0 0 0 0 t 0 0 3344.0 2626.0 10158.0 264.0 223.0 310.0 352.0 154.0 412.0 3896.0 2615.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m44_shift2 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m44_shift2 (oligos_7nt_mkv4_m44oligos_7nt_mkv4_m44)
; oligos_7nt_mkv4_m44 (oligos_7nt_mkv4_m44oligos_7nt_mkv4_m44); m=0 (reference); ncol1=12; shift=2; ncol=14; --vaAACCACArvc ; Alignment reference a 0 0 89 126 319 306 9 11 312 7 321 182 86 79 c 0 0 100 80 1 12 317 314 8 314 5 43 86 108 g 0 0 84 58 8 6 3 1 8 6 2 88 91 81 t 0 0 60 69 5 9 4 7 5 6 5 20 70 65

MA0684.2_shift2 (RUNX3)
; oligos_7nt_mkv4_m44 versus MA0684.2 (RUNX3); m=1/5; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.875527; --awAACCTCAawh ; cor=; Ncor= a 0 0 7768.0 9558.0 19136.0 26243.0 427.0 495.0 6357.0 611.0 26121.0 16137.0 8778.0 6879.0 c 0 0 6083.0 5007.0 2662.0 315.0 26293.0 26208.0 419.0 26015.0 414.0 3077.0 5994.0 6900.0 g 0 0 6685.0 3547.0 3500.0 431.0 198.0 385.0 1911.0 390.0 338.0 4696.0 5642.0 6372.0 t 0 0 6841.0 9265.0 2079.0 388.0 459.0 289.0 18690.0 361.0 504.0 3467.0 6963.0 7226.0

MA0002.2_rc_shift3 (RUNX1_rc)
; oligos_7nt_mkv4_m44 versus MA0002.2_rc (RUNX1_rc); m=2/5; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.871324; ---waaCCACAram ; cor=; Ncor= a 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 c 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 g 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 t 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0

MA0511.2_shift3 (RUNX2)
; oligos_7nt_mkv4_m44 versus MA0511.2 (RUNX2); m=3/5; ncol2=9; w=9; offset=1; strand=D; shift=3; score=0.662975; ---wAACCRCAa-- ; cor=; Ncor= a 0 0 0 3872.0 6621.0 6621.0 0.0 0.0 1914.0 0.0 6621.0 4202.0 0 0 c 0 0 0 1092.0 556.0 325.0 6621.0 6621.0 36.0 6621.0 476.0 677.0 0 0 g 0 0 0 326.0 1215.0 0.0 0.0 0.0 4707.0 0.0 458.0 1134.0 0 0 t 0 0 0 2748.0 582.0 0.0 0.0 0.0 120.0 0.0 191.0 607.0 0 0

MA0479.1_shift0 (FOXH1)
; oligos_7nt_mkv4_m44 versus MA0479.1 (FOXH1); m=4/5; ncol2=11; w=9; offset=-2; strand=D; shift=0; score=0.470522; ybsAATMCACA--- ; cor=; Ncor= a 939.0 1578.0 973.0 8211.0 7547.0 0.0 2374.0 1414.0 8211.0 0.0 7138.0 0 0 0 c 2840.0 2333.0 3261.0 0.0 0.0 0.0 5773.0 6797.0 0.0 8211.0 0.0 0 0 0 g 1490.0 2137.0 3156.0 0.0 229.0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0 t 2942.0 2163.0 821.0 0.0 435.0 8211.0 64.0 0.0 0.0 0.0 1073.0 0 0 0

MA0130.1_shift4 (ZNF354C)
; oligos_7nt_mkv4_m44 versus MA0130.1 (ZNF354C); m=5/5; ncol2=6; w=6; offset=2; strand=D; shift=4; score=0.400493; ----mTCCAC---- ; cor=; Ncor= a 0 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 c 0 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 g 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 t 0 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m21_shift2 ; 22 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m21_shift2 (oligos_8nt_mkv5_m21oligos_8nt_mkv5_m21)
; oligos_8nt_mkv5_m21 (oligos_8nt_mkv5_m21oligos_8nt_mkv5_m21); m=0 (reference); ncol1=12; shift=2; ncol=18; --vsCCACACCCcs---- ; Alignment reference a 0 0 56 41 3 2 181 4 188 0 0 0 43 48 0 0 0 0 c 0 0 58 51 192 193 14 191 3 198 199 198 63 60 0 0 0 0 g 0 0 55 65 1 8 8 3 12 1 5 6 48 59 0 0 0 0 t 0 0 35 47 8 1 1 6 1 5 0 0 50 37 0 0 0 0

MA0039.4_shift2 (KLF4)
; oligos_8nt_mkv5_m21 versus MA0039.4 (KLF4); m=1/21; ncol2=12; w=12; offset=0; strand=D; shift=2; score= 0.8753; --ssCCCCACCChs---- ; cor=; Ncor= a 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 0 0 c 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 0 0 g 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 0 0 t 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0 0 0

MA0493.1_shift2 (Klf1)
; oligos_8nt_mkv5_m21 versus MA0493.1 (Klf1); m=2/21; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.863515; --rrCCACACCCw----- ; cor=; Ncor= a 0 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 0 0 c 0 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 0 0 g 0 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 0 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0 0 0

MA1511.1_shift3 (KLF10)
; oligos_8nt_mkv5_m21 versus MA1511.1 (KLF10); m=3/21; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.839044; ---gmCACrCCCmy---- ; cor=; Ncor= a 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 0 0 c 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 0 0 g 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 0 0 t 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0 0 0

MA1515.1_shift2 (KLF2)
; oligos_8nt_mkv5_m21 versus MA1515.1 (KLF2); m=4/21; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.823421; --srCCmCrCCCw----- ; cor=; Ncor= a 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 0 0 c 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 0 0 g 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 0 0 t 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0 0 0

MA1517.1_shift2 (KLF6)
; oligos_8nt_mkv5_m21 versus MA1517.1 (KLF6); m=5/21; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.810447; --srcCACRCCCm----- ; cor=; Ncor= a 0 0 443.0 1035.0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 0 0 c 0 0 624.0 490.0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 0 0 g 0 0 626.0 1157.0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 0 0 t 0 0 499.0 136.0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0 0 0

MA1512.1_shift3 (KLF11)
; oligos_8nt_mkv5_m21 versus MA1512.1 (KLF11); m=6/21; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.762644; ---gcCACGCCCmC---- ; cor=; Ncor= a 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 0 c 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 0 g 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 0 t 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0 0

MA0746.2_shift2 (SP3)
; oligos_8nt_mkv5_m21 versus MA0746.2 (SP3); m=7/21; ncol2=13; w=12; offset=0; strand=D; shift=2; score=0.747127; --srCCACGCCCmCy--- ; cor=; Ncor= a 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 0 0 c 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 0 0 g 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 0 0 t 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0 0 0

MA0741.1_shift3 (KLF16)
; oligos_8nt_mkv5_m21 versus MA0741.1 (KLF16); m=8/21; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.746414; ---gmCMCgCCCMC---- ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0 0

MA1516.1_shift2 (KLF3)
; oligos_8nt_mkv5_m21 versus MA1516.1 (KLF3); m=9/21; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.73462; --grCCrCGCCCw----- ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 0 0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 0 0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 0 0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0 0 0 0

MA0599.1_shift3 (KLF5)
; oligos_8nt_mkv5_m21 versus MA0599.1 (KLF5); m=10/21; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.709757; ---gCCMCrCCCh----- ; cor=; Ncor= a 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 0 c 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 0 g 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0 0

MA0747.1_shift3 (SP8)
; oligos_8nt_mkv5_m21 versus MA0747.1 (SP8); m=11/21; ncol2=12; w=11; offset=1; strand=D; shift=3; score=0.689471; ---rmCACgCCCmCy--- ; cor=; Ncor= a 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 0 0 c 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 0 0 g 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 0 0 t 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0 0 0

MA1107.2_shift1 (KLF9)
; oligos_8nt_mkv5_m21 versus MA1107.2 (KLF9); m=12/21; ncol2=16; w=12; offset=-1; strand=D; shift=1; score=0.674021; -crgCCACACCCAChyc- ; cor=; Ncor= a 0 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 5875.0 0 c 0 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 9519.0 0 g 0 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 5681.0 0 t 0 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0 4504.0 0

MA1564.1_shift3 (SP9)
; oligos_8nt_mkv5_m21 versus MA1564.1 (SP9); m=13/21; ncol2=12; w=11; offset=1; strand=D; shift=3; score=0.67079; ---rcCmCGCCCmcy--- ; cor=; Ncor= a 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 0 0 c 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 0 0 g 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 0 0 t 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0 0 0

MA0742.1_shift2 (Klf12)
; oligos_8nt_mkv5_m21 versus MA0742.1 (Klf12); m=14/21; ncol2=15; w=12; offset=0; strand=D; shift=2; score=0.655051; --GrCCACGCCCwthtw- ; cor=; Ncor= a 0 0 167.0 553.0 19.0 5.0 853.0 9.0 215.0 0.0 0.0 0.0 410.0 238.0 308.0 238.0 271.0 0 c 0 0 35.0 11.0 668.0 670.0 27.0 675.0 1.0 687.0 706.0 715.0 120.0 219.0 239.0 186.0 210.0 0 g 0 0 1158.0 531.0 8.0 12.0 2.0 0.0 1348.0 0.0 9.0 0.0 0.0 99.0 84.0 117.0 141.0 0 t 0 0 225.0 0.0 9.0 3.0 0.0 4.0 16.0 4.0 13.0 13.0 483.0 403.0 290.0 429.0 330.0 0

MA0740.1_shift2 (KLF14)
; oligos_8nt_mkv5_m21 versus MA0740.1 (KLF14); m=15/21; ncol2=14; w=12; offset=0; strand=D; shift=2; score=0.647524; --krcCACGCCCmYyt-- ; cor=; Ncor= a 0 0 430.0 1205.0 526.0 0.0 1708.0 2.0 69.0 0.0 0.0 0.0 716.0 32.0 280.0 649.0 0 0 c 0 0 215.0 73.0 1360.0 1599.0 136.0 1596.0 36.0 1602.0 1604.0 1609.0 961.0 1463.0 594.0 741.0 0 0 g 0 0 966.0 2280.0 96.0 10.0 58.0 0.0 2939.0 3.0 3.0 4.0 1.0 15.0 89.0 314.0 0 0 t 0 0 693.0 71.0 404.0 248.0 5.0 2.0 31.0 0.0 6.0 65.0 31.0 559.0 1041.0 1670.0 0 0

MA1566.1_rc_shift3 (TBX3_rc)
; oligos_8nt_mkv5_m21 versus MA1566.1_rc (TBX3_rc); m=16/21; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.623128; ---ttsACACcty----- ; cor=; Ncor= a 0 0 0 578.0 484.0 1112.0 2544.0 0.0 2544.0 0.0 302.0 760.0 497.0 0 0 0 0 0 c 0 0 0 620.0 947.0 2544.0 155.0 2544.0 0.0 2544.0 2544.0 1207.0 1003.0 0 0 0 0 0 g 0 0 0 586.0 410.0 1471.0 634.0 0.0 735.0 45.0 862.0 481.0 399.0 0 0 0 0 0 t 0 0 0 760.0 2544.0 170.0 115.0 0.0 16.0 6.0 427.0 2544.0 644.0 0 0 0 0 0

MA0079.4_shift0 (SP1)
; oligos_8nt_mkv5_m21 versus MA0079.4 (SP1); m=17/21; ncol2=15; w=12; offset=-2; strand=D; shift=0; score=0.620604; ywrRCCACGCCCmCh--- ; cor=; Ncor= a 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 0 0 c 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 0 0 g 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 0 0 t 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0 0 0

MA0685.1_shift0 (SP4)
; oligos_8nt_mkv5_m21 versus MA0685.1 (SP4); m=18/21; ncol2=17; w=12; offset=-2; strand=D; shift=0; score=0.537842; ywrGCCACGCCCmCtyy- ; cor=; Ncor= a 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 967.0 0 c 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 1180.0 0 g 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 556.0 0 t 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0 1509.0 0

MA0657.1_shift1 (KLF13)
; oligos_8nt_mkv5_m21 versus MA0657.1 (KLF13); m=19/21; ncol2=18; w=12; offset=-1; strand=D; shift=1; score=0.486187; -rtRmCACGCCCCYTTtt ; cor=; Ncor= a 0 1508.0 733.0 1891.0 496.0 75.0 2384.0 0.0 24.0 0.0 4.0 1.0 509.0 3.0 156.0 247.0 735.0 404.0 c 0 248.0 46.0 0.0 923.0 924.0 0.0 1353.0 2.0 1596.0 1469.0 1760.0 1766.0 638.0 350.0 235.0 554.0 176.0 g 0 915.0 796.0 4630.0 58.0 2.0 11.0 7.0 3028.0 0.0 0.0 0.0 0.0 3.0 54.0 270.0 841.0 483.0 t 0 590.0 1766.0 59.0 102.0 61.0 0.0 3.0 9.0 7.0 0.0 16.0 10.0 1403.0 2040.0 2968.0 2247.0 1672.0

MA0807.1_rc_shift4 (TBX5_rc)
; oligos_8nt_mkv5_m21 versus MA0807.1_rc (TBX5_rc); m=20/21; ncol2=8; w=8; offset=2; strand=R; shift=4; score=0.468071; ----TmACACCT------ ; cor=; Ncor= a 0 0 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 c 0 0 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 g 0 0 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 t 0 0 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0

MA0130.1_shift2 (ZNF354C)
; oligos_8nt_mkv5_m21 versus MA0130.1 (ZNF354C); m=21/21; ncol2=6; w=6; offset=0; strand=D; shift=2; score=0.467186; --mTCCAC---------- ; cor=; Ncor= a 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 0 0 0 c 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 0 0 0 g 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 0 0 0 t 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m22_shift2 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m22_shift2 (oligos_8nt_mkv5_m22oligos_8nt_mkv5_m22)
; oligos_8nt_mkv5_m22 (oligos_8nt_mkv5_m22oligos_8nt_mkv5_m22); m=0 (reference); ncol1=12; shift=2; ncol=14; --cwAACCACAArm ; Alignment reference a 0 0 54 78 204 192 9 12 198 7 207 184 63 55 c 0 0 58 37 1 12 203 199 8 200 5 14 54 76 g 0 0 54 45 9 6 3 1 8 6 2 14 61 45 t 0 0 53 59 5 9 4 7 5 6 5 7 41 43

MA0684.2_shift2 (RUNX3)
; oligos_8nt_mkv5_m22 versus MA0684.2 (RUNX3); m=1/5; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.875122; --awAACCTCAawh ; cor=; Ncor= a 0 0 7768.0 9558.0 19136.0 26243.0 427.0 495.0 6357.0 611.0 26121.0 16137.0 8778.0 6879.0 c 0 0 6083.0 5007.0 2662.0 315.0 26293.0 26208.0 419.0 26015.0 414.0 3077.0 5994.0 6900.0 g 0 0 6685.0 3547.0 3500.0 431.0 198.0 385.0 1911.0 390.0 338.0 4696.0 5642.0 6372.0 t 0 0 6841.0 9265.0 2079.0 388.0 459.0 289.0 18690.0 361.0 504.0 3467.0 6963.0 7226.0

MA0002.2_rc_shift3 (RUNX1_rc)
; oligos_8nt_mkv5_m22 versus MA0002.2_rc (RUNX1_rc); m=2/5; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.837864; ---waaCCACAram ; cor=; Ncor= a 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 c 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 g 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 t 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0

MA0511.2_shift3 (RUNX2)
; oligos_8nt_mkv5_m22 versus MA0511.2 (RUNX2); m=3/5; ncol2=9; w=9; offset=1; strand=D; shift=3; score=0.664179; ---wAACCRCAa-- ; cor=; Ncor= a 0 0 0 3872.0 6621.0 6621.0 0.0 0.0 1914.0 0.0 6621.0 4202.0 0 0 c 0 0 0 1092.0 556.0 325.0 6621.0 6621.0 36.0 6621.0 476.0 677.0 0 0 g 0 0 0 326.0 1215.0 0.0 0.0 0.0 4707.0 0.0 458.0 1134.0 0 0 t 0 0 0 2748.0 582.0 0.0 0.0 0.0 120.0 0.0 191.0 607.0 0 0

MA0479.1_shift0 (FOXH1)
; oligos_8nt_mkv5_m22 versus MA0479.1 (FOXH1); m=4/5; ncol2=11; w=9; offset=-2; strand=D; shift=0; score=0.469349; ybsAATMCACA--- ; cor=; Ncor= a 939.0 1578.0 973.0 8211.0 7547.0 0.0 2374.0 1414.0 8211.0 0.0 7138.0 0 0 0 c 2840.0 2333.0 3261.0 0.0 0.0 0.0 5773.0 6797.0 0.0 8211.0 0.0 0 0 0 g 1490.0 2137.0 3156.0 0.0 229.0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0 t 2942.0 2163.0 821.0 0.0 435.0 8211.0 64.0 0.0 0.0 0.0 1073.0 0 0 0

MA0130.1_shift4 (ZNF354C)
; oligos_8nt_mkv5_m22 versus MA0130.1 (ZNF354C); m=5/5; ncol2=6; w=6; offset=2; strand=D; shift=4; score=0.401355; ----mTCCAC---- ; cor=; Ncor= a 0 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 c 0 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 g 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 t 0 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m22_shift0 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m22_shift0 (oligos_7nt_mkv4_m22oligos_7nt_mkv4_m22)
; oligos_7nt_mkv4_m22 (oligos_7nt_mkv4_m22oligos_7nt_mkv4_m22); m=0 (reference); ncol1=11; shift=0; ncol=18; ccACATTCCwk------- ; Alignment reference a 60 50 262 6 267 1 7 8 3 82 49 0 0 0 0 0 0 0 c 82 118 2 235 1 1 3 256 253 49 66 0 0 0 0 0 0 0 g 63 54 4 10 2 1 1 0 11 41 86 0 0 0 0 0 0 0 t 65 48 2 19 0 267 259 6 3 98 69 0 0 0 0 0 0 0

MA0809.2_shift0 (TEAD4)
; oligos_7nt_mkv4_m22 versus MA0809.2 (TEAD4); m=1/5; ncol2=12; w=11; offset=0; strand=D; shift=0; score=0.874421; ycACATTCCAgs------ ; cor=; Ncor= a 18932.0 17306.0 61263.0 7543.0 74797.0 965.0 2673.0 1366.0 1314.0 61802.0 16617.0 19272.0 0 0 0 0 0 0 c 22343.0 26577.0 2414.0 66205.0 1218.0 1129.0 1176.0 72555.0 75066.0 3874.0 13864.0 20301.0 0 0 0 0 0 0 g 15111.0 15427.0 11265.0 3295.0 569.0 1025.0 2100.0 1580.0 212.0 1191.0 32220.0 22630.0 0 0 0 0 0 0 t 21700.0 18776.0 3144.0 1043.0 1502.0 74967.0 72137.0 2585.0 1494.0 11219.0 15385.0 15883.0 0 0 0 0 0 0

MA1121.1_shift0 (TEAD2)
; oligos_7nt_mkv4_m22 versus MA1121.1 (TEAD2); m=2/5; ncol2=13; w=11; offset=0; strand=D; shift=0; score=0.835957; hcACATTCCwgsc----- ; cor=; Ncor= a 137.0 88.0 441.0 39.0 517.0 2.0 15.0 8.0 8.0 263.0 112.0 111.0 109.0 0 0 0 0 0 c 145.0 238.0 17.0 478.0 5.0 10.0 8.0 500.0 513.0 60.0 111.0 172.0 221.0 0 0 0 0 0 g 112.0 81.0 70.0 14.0 11.0 6.0 9.0 10.0 3.0 56.0 207.0 147.0 117.0 0 0 0 0 0 t 148.0 135.0 14.0 11.0 9.0 524.0 510.0 24.0 18.0 163.0 112.0 112.0 95.0 0 0 0 0 0

MA0090.3_shift0 (TEAD1)
; oligos_7nt_mkv4_m22 versus MA0090.3 (TEAD1); m=3/5; ncol2=13; w=11; offset=0; strand=D; shift=0; score=0.792394; hyACATTCCAGsm----- ; cor=; Ncor= a 17689.0 16651.0 58030.0 6096.0 68106.0 535.0 4976.0 1348.0 702.0 57190.0 9124.0 13252.0 19194.0 0 0 0 0 0 c 19272.0 22059.0 1248.0 61276.0 646.0 700.0 622.0 66953.0 67635.0 1729.0 6215.0 20002.0 21358.0 0 0 0 0 0 g 14429.0 12053.0 9179.0 1923.0 946.0 646.0 1210.0 765.0 374.0 2051.0 47856.0 26525.0 16344.0 0 0 0 0 0 t 19008.0 19635.0 1941.0 1103.0 700.0 68517.0 63590.0 1332.0 1687.0 9428.0 7203.0 10619.0 13502.0 0 0 0 0 0

MA0808.1_shift2 (TEAD3)
; oligos_7nt_mkv4_m22 versus MA0808.1 (TEAD3); m=4/5; ncol2=8; w=8; offset=2; strand=D; shift=2; score=0.688668; --rCATTCCw-------- ; cor=; Ncor= a 0 0 12530.0 2524.0 21444.0 0.0 4566.0 0.0 0.0 21444.0 0 0 0 0 0 0 0 0 c 0 0 66.0 18920.0 0.0 0.0 23.0 21444.0 21444.0 1039.0 0 0 0 0 0 0 0 0 g 0 0 8913.0 441.0 0.0 0.0 969.0 0.0 0.0 8654.0 0 0 0 0 0 0 0 0 t 0 0 1109.0 0.0 0.0 21444.0 16878.0 0.0 4.0 13663.0 0 0 0 0 0 0 0 0

MA1600.1_shift0 (ZNF684)
; oligos_7nt_mkv4_m22 versus MA1600.1 (ZNF684); m=5/5; ncol2=18; w=11; offset=0; strand=D; shift=0; score=0.446219; ryACAGTCCACCCCTTkr ; cor=; Ncor= a 524.0 82.0 1238.0 9.0 1184.0 60.0 9.0 13.0 40.0 1012.0 3.0 44.0 7.0 0.0 249.0 56.0 216.0 606.0 c 168.0 403.0 24.0 1253.0 11.0 216.0 14.0 1236.0 1221.0 9.0 1226.0 1253.0 1229.0 1263.0 129.0 59.0 168.0 201.0 g 362.0 314.0 68.0 9.0 110.0 1135.0 59.0 25.0 2.0 57.0 63.0 10.0 7.0 0.0 18.0 14.0 514.0 326.0 t 206.0 721.0 19.0 19.0 131.0 74.0 1259.0 10.0 67.0 220.0 61.0 6.0 92.0 3.0 1107.0 1224.0 619.0 127.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m15_shift2 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m15_shift2 (oligos_7nt_mkv4_m15oligos_7nt_mkv4_m15)
; oligos_7nt_mkv4_m15 (oligos_7nt_mkv4_m15oligos_7nt_mkv4_m15); m=0 (reference); ncol1=12; shift=2; ncol=14; --vwAACCACAgcs ; Alignment reference a 0 0 82 103 292 290 5 12 281 7 286 49 71 64 c 0 0 77 71 0 4 290 276 3 281 3 36 96 95 g 0 0 92 46 3 2 2 10 13 8 9 198 74 76 t 0 0 49 80 5 4 3 2 3 4 2 17 59 65

MA0002.2_rc_shift3 (RUNX1_rc)
; oligos_7nt_mkv4_m15 versus MA0002.2_rc (RUNX1_rc); m=1/5; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.873829; ---waaCCACAram ; cor=; Ncor= a 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 c 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 g 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 t 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0

MA0684.2_shift2 (RUNX3)
; oligos_7nt_mkv4_m15 versus MA0684.2 (RUNX3); m=2/5; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.831717; --awAACCTCAawh ; cor=; Ncor= a 0 0 7768.0 9558.0 19136.0 26243.0 427.0 495.0 6357.0 611.0 26121.0 16137.0 8778.0 6879.0 c 0 0 6083.0 5007.0 2662.0 315.0 26293.0 26208.0 419.0 26015.0 414.0 3077.0 5994.0 6900.0 g 0 0 6685.0 3547.0 3500.0 431.0 198.0 385.0 1911.0 390.0 338.0 4696.0 5642.0 6372.0 t 0 0 6841.0 9265.0 2079.0 388.0 459.0 289.0 18690.0 361.0 504.0 3467.0 6963.0 7226.0

MA0483.1_shift3 (Gfi1b)
; oligos_7nt_mkv4_m15 versus MA0483.1 (Gfi1b); m=3/5; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.688751; ---aAATCwCwGCw ; cor=; Ncor= a 0 0 0 1124.0 1761.0 1759.0 0.0 0.0 1033.0 61.0 1116.0 57.0 142.0 740.0 c 0 0 0 438.0 0.0 0.0 338.0 1761.0 21.0 1312.0 0.0 1.0 1328.0 433.0 g 0 0 0 104.0 0.0 2.0 28.0 0.0 0.0 388.0 1.0 1676.0 76.0 130.0 t 0 0 0 95.0 0.0 0.0 1395.0 0.0 707.0 0.0 644.0 27.0 215.0 458.0

MA0511.2_shift3 (RUNX2)
; oligos_7nt_mkv4_m15 versus MA0511.2 (RUNX2); m=4/5; ncol2=9; w=9; offset=1; strand=D; shift=3; score=0.630756; ---wAACCRCAa-- ; cor=; Ncor= a 0 0 0 3872.0 6621.0 6621.0 0.0 0.0 1914.0 0.0 6621.0 4202.0 0 0 c 0 0 0 1092.0 556.0 325.0 6621.0 6621.0 36.0 6621.0 476.0 677.0 0 0 g 0 0 0 326.0 1215.0 0.0 0.0 0.0 4707.0 0.0 458.0 1134.0 0 0 t 0 0 0 2748.0 582.0 0.0 0.0 0.0 120.0 0.0 191.0 607.0 0 0

MA0479.1_shift0 (FOXH1)
; oligos_7nt_mkv4_m15 versus MA0479.1 (FOXH1); m=5/5; ncol2=11; w=9; offset=-2; strand=D; shift=0; score=0.458935; ybsAATMCACA--- ; cor=; Ncor= a 939.0 1578.0 973.0 8211.0 7547.0 0.0 2374.0 1414.0 8211.0 0.0 7138.0 0 0 0 c 2840.0 2333.0 3261.0 0.0 0.0 0.0 5773.0 6797.0 0.0 8211.0 0.0 0 0 0 g 1490.0 2137.0 3156.0 0.0 229.0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0 t 2942.0 2163.0 821.0 0.0 435.0 8211.0 64.0 0.0 0.0 0.0 1073.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m31_shift3 ; 84 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m31_shift3 (oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31)
; oligos_8nt_mkv5_m31 (oligos_8nt_mkv5_m31oligos_8nt_mkv5_m31); m=0 (reference); ncol1=12; shift=3; ncol=19; ---wsATTAGTCAbs---- ; Alignment reference a 0 0 0 45 32 141 4 1 158 4 3 0 167 18 31 0 0 0 0 c 0 0 0 36 58 14 6 8 1 9 11 168 4 58 64 0 0 0 0 g 0 0 0 43 44 11 3 37 1 155 5 5 0 48 47 0 0 0 0 t 0 0 0 49 39 7 160 127 13 5 154 0 2 49 31 0 0 0 0

MA1130.1_shift3 (FOSL2::JUN)
; oligos_8nt_mkv5_m31 versus MA1130.1 (FOSL2::JUN); m=1/83; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.87323; ---kkrTGAGTCAym---- ; cor=; Ncor= a 0 0 0 189.0 214.0 542.0 1.0 1.0 847.0 103.0 1.0 20.0 998.0 19.0 269.0 0 0 0 0 c 0 0 0 248.0 179.0 121.0 1.0 1.0 123.0 141.0 1.0 979.0 0.0 299.0 341.0 0 0 0 0 g 0 0 0 295.0 338.0 282.0 1.0 840.0 1.0 698.0 1.0 1.0 1.0 93.0 180.0 0 0 0 0 t 0 0 0 268.0 269.0 55.0 998.0 158.0 29.0 58.0 998.0 1.0 1.0 589.0 209.0 0 0 0 0

MA1137.1_rc_shift3 (FOSL1::JUNB_rc)
; oligos_8nt_mkv5_m31 versus MA1137.1_rc (FOSL1::JUNB_rc); m=2/83; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.830741; ---gkaTKAgTCAymr--- ; cor=; Ncor= a 0 0 0 230.0 198.0 552.0 37.0 37.0 803.0 113.0 42.0 63.0 945.0 47.0 263.0 300.0 0 0 0 c 0 0 0 223.0 204.0 170.0 38.0 9.0 115.0 198.0 21.0 880.0 16.0 287.0 376.0 195.0 0 0 0 g 0 0 0 300.0 298.0 225.0 21.0 683.0 23.0 626.0 20.0 21.0 16.0 100.0 146.0 269.0 0 0 0 t 0 0 0 247.0 300.0 53.0 904.0 271.0 59.0 63.0 917.0 36.0 23.0 566.0 216.0 237.0 0 0 0

MA1128.1_rc_shift3 (FOSL1::JUN_rc)
; oligos_8nt_mkv5_m31 versus MA1128.1_rc (FOSL1::JUN_rc); m=3/83; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.813919; ---kkaTGAGTCAymm--- ; cor=; Ncor= a 0 0 0 196.0 223.0 579.0 4.0 4.0 826.0 97.0 3.0 38.0 996.0 26.0 289.0 293.0 0 0 0 c 0 0 0 237.0 173.0 119.0 9.0 2.0 140.0 51.0 2.0 957.0 1.0 283.0 380.0 253.0 0 0 0 g 0 0 0 289.0 308.0 245.0 4.0 835.0 2.0 826.0 2.0 2.0 2.0 89.0 159.0 246.0 0 0 0 t 0 0 0 277.0 296.0 57.0 984.0 159.0 33.0 26.0 994.0 3.0 1.0 602.0 172.0 208.0 0 0 0

MA1141.1_shift3 (FOS::JUND)
; oligos_8nt_mkv5_m31 versus MA1141.1 (FOS::JUND); m=4/83; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.811194; ---kkrTGAGTCAymv--- ; cor=; Ncor= a 0 0 0 183.0 182.0 593.0 0.0 0.0 894.0 75.0 0.0 29.0 999.0 21.0 250.0 264.0 0 0 0 c 0 0 0 244.0 167.0 104.0 1.0 0.0 91.0 40.0 0.0 970.0 0.0 290.0 370.0 264.0 0 0 0 g 0 0 0 315.0 389.0 266.0 0.0 871.0 0.0 867.0 0.0 0.0 0.0 77.0 195.0 292.0 0 0 0 t 0 0 0 258.0 263.0 38.0 999.0 129.0 15.0 19.0 999.0 0.0 0.0 612.0 185.0 180.0 0 0 0

MA0477.2_rc_shift3 (FOSL1_rc)
; oligos_8nt_mkv5_m31 versus MA0477.2_rc (FOSL1_rc); m=5/83; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.798956; ---rdaTGAGTCAtyh--- ; cor=; Ncor= a 0 0 0 15023.0 15056.0 38033.0 363.0 559.0 55860.0 2591.0 302.0 2246.0 56778.0 2795.0 13887.0 15363.0 0 0 0 c 0 0 0 11065.0 12314.0 6533.0 566.0 278.0 598.0 8615.0 286.0 54619.0 183.0 13127.0 16855.0 14848.0 0 0 0 g 0 0 0 17637.0 15640.0 10399.0 344.0 53711.0 163.0 43918.0 287.0 301.0 460.0 6703.0 11018.0 12491.0 0 0 0 t 0 0 0 13956.0 14671.0 2716.0 56408.0 3133.0 1060.0 2557.0 56806.0 515.0 260.0 35056.0 15921.0 14979.0 0 0 0

MA0491.2_rc_shift3 (JUND_rc)
; oligos_8nt_mkv5_m31 versus MA0491.2_rc (JUND_rc); m=6/83; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.796199; ---ddATGAGTCAtyw--- ; cor=; Ncor= a 0 0 0 28704.0 27477.0 83216.0 809.0 1449.0 102249.0 4650.0 925.0 3920.0 104101.0 5020.0 25652.0 30507.0 0 0 0 c 0 0 0 19236.0 22249.0 7908.0 965.0 953.0 1147.0 20633.0 573.0 99787.0 443.0 20586.0 31347.0 25006.0 0 0 0 g 0 0 0 29793.0 28250.0 12025.0 751.0 98628.0 496.0 76028.0 650.0 873.0 757.0 10173.0 19712.0 21965.0 0 0 0 t 0 0 0 28212.0 27969.0 2796.0 103420.0 4915.0 2053.0 4634.0 103797.0 1365.0 644.0 70166.0 29234.0 28467.0 0 0 0

MA0490.2_rc_shift3 (JUNB_rc)
; oligos_8nt_mkv5_m31 versus MA0490.2_rc (JUNB_rc); m=7/83; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.795312; ---dwATGAGTCAThw--- ; cor=; Ncor= a 0 0 0 22998.0 22591.0 59750.0 693.0 797.0 76655.0 4798.0 682.0 3779.0 78342.0 3866.0 20085.0 22351.0 0 0 0 c 0 0 0 15068.0 16491.0 7508.0 900.0 617.0 913.0 10519.0 550.0 74757.0 322.0 11566.0 20403.0 18150.0 0 0 0 g 0 0 0 20653.0 19230.0 8876.0 588.0 73199.0 289.0 59784.0 523.0 550.0 654.0 7817.0 15807.0 16583.0 0 0 0 t 0 0 0 21137.0 21544.0 3722.0 77675.0 5243.0 1999.0 4755.0 78101.0 770.0 538.0 56607.0 23561.0 22772.0 0 0 0

MA0462.2_rc_shift4 (BATF::JUN_rc)
; oligos_8nt_mkv5_m31 versus MA0462.2_rc (BATF::JUN_rc); m=8/83; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.78903; ----daTGAGTCAtw---- ; cor=; Ncor= a 0 0 0 0 10156.0 18005.0 558.0 907.0 36619.0 1399.0 320.0 3785.0 37330.0 5376.0 13310.0 0 0 0 0 c 0 0 0 0 4923.0 7745.0 424.0 522.0 539.0 4188.0 350.0 33135.0 182.0 6729.0 9317.0 0 0 0 0 g 0 0 0 0 9668.0 6105.0 318.0 32770.0 241.0 31168.0 204.0 400.0 275.0 7260.0 4762.0 0 0 0 0 t 0 0 0 0 13407.0 6299.0 36854.0 3955.0 755.0 1399.0 37280.0 834.0 367.0 18789.0 10765.0 0 0 0 0

MA1634.1_rc_shift4 (BATF_rc)
; oligos_8nt_mkv5_m31 versus MA1634.1_rc (BATF_rc); m=9/83; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.786636; ----daTGAGTCAtw---- ; cor=; Ncor= a 0 0 0 0 12902.0 21615.0 754.0 1276.0 44736.0 2051.0 471.0 4682.0 45887.0 6875.0 16219.0 0 0 0 0 c 0 0 0 0 5919.0 9681.0 507.0 711.0 836.0 5573.0 341.0 40617.0 283.0 8627.0 11492.0 0 0 0 0 g 0 0 0 0 12048.0 7566.0 431.0 40279.0 306.0 37333.0 250.0 570.0 355.0 8931.0 5742.0 0 0 0 0 t 0 0 0 0 16139.0 8146.0 45316.0 4742.0 1130.0 2051.0 45946.0 1139.0 483.0 22575.0 13555.0 0 0 0 0

MA0835.2_rc_shift4 (BATF3_rc)
; oligos_8nt_mkv5_m31 versus MA0835.2_rc (BATF3_rc); m=10/83; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.784557; ----waTGAGTCAtw---- ; cor=; Ncor= a 0 0 0 0 3456.0 5718.0 235.0 282.0 11502.0 408.0 116.0 1238.0 11737.0 1891.0 4503.0 0 0 0 0 c 0 0 0 0 1255.0 2249.0 117.0 88.0 117.0 560.0 87.0 10420.0 37.0 1831.0 2608.0 0 0 0 0 g 0 0 0 0 2733.0 1664.0 84.0 10347.0 79.0 10589.0 92.0 62.0 59.0 2106.0 1245.0 0 0 0 0 t 0 0 0 0 4521.0 2334.0 11529.0 1248.0 267.0 408.0 11670.0 245.0 132.0 6137.0 3609.0 0 0 0 0

MA1134.1_rc_shift3 (FOS::JUNB_rc)
; oligos_8nt_mkv5_m31 versus MA1134.1_rc (FOS::JUNB_rc); m=11/83; ncol2=12; w=12; offset=0; strand=R; shift=3; score=0.778047; ---bkrTGAsTCAym---- ; cor=; Ncor= a 0 0 0 156.0 184.0 658.0 1.0 1.0 996.0 25.0 4.0 131.0 998.0 36.0 286.0 0 0 0 0 c 0 0 0 256.0 178.0 51.0 1.0 1.0 3.0 618.0 1.0 868.0 1.0 267.0 372.0 0 0 0 0 g 0 0 0 304.0 363.0 284.0 1.0 971.0 1.0 309.0 30.0 1.0 1.0 105.0 168.0 0 0 0 0 t 0 0 0 283.0 275.0 7.0 998.0 27.0 1.0 48.0 965.0 1.0 1.0 593.0 174.0 0 0 0 0

MA0476.1_rc_shift4 (FOS_rc)
; oligos_8nt_mkv5_m31 versus MA0476.1_rc (FOS_rc); m=12/83; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.756134; ----vATGAsTCAbh---- ; cor=; Ncor= a 0 0 0 0 9257.0 21777.0 0.0 0.0 29396.0 3113.0 0.0 2288.0 29396.0 903.0 11119.0 0 0 0 0 c 0 0 0 0 7897.0 1538.0 0.0 0.0 0.0 11206.0 0.0 27108.0 0.0 10841.0 9686.0 0 0 0 0 g 0 0 0 0 8236.0 5823.0 0.0 29396.0 0.0 14079.0 0.0 0.0 0.0 10177.0 712.0 0 0 0 0 t 0 0 0 0 4006.0 258.0 29396.0 0.0 0.0 998.0 29396.0 0.0 0.0 7475.0 7879.0 0 0 0 0

MA0841.1_rc_shift4 (NFE2_rc)
; oligos_8nt_mkv5_m31 versus MA0841.1_rc (NFE2_rc); m=13/83; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.753627; ----sATGAGTCATb---- ; cor=; Ncor= a 0 0 0 0 3417.0 18831.0 5.0 3.0 18831.0 17.0 4.0 2.0 18831.0 5.0 731.0 0 0 0 0 c 0 0 0 0 5067.0 10.0 8.0 0.0 3.0 4472.0 0.0 18831.0 0.0 1306.0 5303.0 0 0 0 0 g 0 0 0 0 9860.0 2689.0 13.0 18831.0 20.0 14360.0 11.0 0.0 8.0 9.0 7208.0 0 0 0 0 t 0 0 0 0 487.0 0.0 18831.0 1.0 0.0 37.0 18831.0 0.0 2.0 18831.0 5589.0 0 0 0 0

MA1622.1_rc_shift3 (Smad2::Smad3_rc)
; oligos_8nt_mkv5_m31 versus MA1622.1_rc (Smad2::Smad3_rc); m=14/83; ncol2=14; w=12; offset=0; strand=R; shift=3; score=0.744927; ---kwaTGAGTCAymay-- ; cor=; Ncor= a 0 0 0 2480.0 2764.0 5636.0 125.0 101.0 9977.0 696.0 102.0 405.0 10151.0 794.0 2725.0 2998.0 2481.0 0 0 c 0 0 0 2524.0 2154.0 1979.0 79.0 90.0 68.0 1542.0 58.0 9768.0 56.0 2888.0 3479.0 2324.0 2615.0 0 0 g 0 0 0 2595.0 2479.0 2047.0 85.0 9443.0 53.0 7480.0 44.0 82.0 59.0 2212.0 1642.0 2515.0 2254.0 0 0 t 0 0 0 2746.0 2948.0 683.0 10056.0 711.0 247.0 627.0 10141.0 90.0 79.0 4451.0 2499.0 2508.0 2995.0 0 0

MA1142.1_rc_shift5 (FOSL1::JUND_rc)
; oligos_8nt_mkv5_m31 versus MA1142.1_rc (FOSL1::JUND_rc); m=15/83; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.738955; -----aTkagTCAyy---- ; cor=; Ncor= a 0 0 0 0 0 470.0 31.0 64.0 669.0 180.0 41.0 140.0 913.0 40.0 235.0 0 0 0 0 c 0 0 0 0 0 144.0 17.0 25.0 187.0 191.0 82.0 777.0 34.0 282.0 279.0 0 0 0 0 g 0 0 0 0 0 212.0 40.0 641.0 45.0 581.0 12.0 61.0 23.0 127.0 221.0 0 0 0 0 t 0 0 0 0 0 174.0 912.0 270.0 98.0 49.0 864.0 22.0 30.0 551.0 265.0 0 0 0 0

MA0099.3_shift5 (FOS::JUN)
; oligos_8nt_mkv5_m31 versus MA0099.3 (FOS::JUN); m=16/83; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.736486; -----rTGAGTCAym---- ; cor=; Ncor= a 0 0 0 0 0 592.0 3.0 7.0 820.0 78.0 5.0 30.0 992.0 24.0 277.0 0 0 0 0 c 0 0 0 0 0 111.0 5.0 1.0 131.0 180.0 2.0 963.0 2.0 313.0 397.0 0 0 0 0 g 0 0 0 0 0 257.0 2.0 824.0 4.0 688.0 2.0 3.0 2.0 95.0 164.0 0 0 0 0 t 0 0 0 0 0 40.0 990.0 168.0 45.0 54.0 991.0 4.0 4.0 568.0 162.0 0 0 0 0

MA1135.1_rc_shift5 (FOSB::JUNB_rc)
; oligos_8nt_mkv5_m31 versus MA1135.1_rc (FOSB::JUNB_rc); m=17/83; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.732458; -----rTGAsTCAym---- ; cor=; Ncor= a 0 0 0 0 0 578.0 1.0 1.0 958.0 61.0 1.0 19.0 998.0 20.0 270.0 0 0 0 0 c 0 0 0 0 0 126.0 1.0 1.0 39.0 309.0 1.0 980.0 1.0 321.0 429.0 0 0 0 0 g 0 0 0 0 0 259.0 0.0 808.0 1.0 596.0 1.0 0.0 0.0 61.0 182.0 0 0 0 0 t 0 0 0 0 0 37.0 998.0 191.0 2.0 34.0 997.0 1.0 1.0 598.0 119.0 0 0 0 0

MA1138.1_rc_shift5 (FOSL2::JUNB_rc)
; oligos_8nt_mkv5_m31 versus MA1138.1_rc (FOSL2::JUNB_rc); m=18/83; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.726824; -----rTGAsTCAym---- ; cor=; Ncor= a 0 0 0 0 0 602.0 0.0 0.0 973.0 85.0 0.0 14.0 999.0 13.0 277.0 0 0 0 0 c 0 0 0 0 0 112.0 0.0 0.0 26.0 292.0 0.0 985.0 0.0 314.0 407.0 0 0 0 0 g 0 0 0 0 0 251.0 0.0 831.0 0.0 568.0 0.0 0.0 0.0 53.0 164.0 0 0 0 0 t 0 0 0 0 0 35.0 999.0 168.0 1.0 54.0 999.0 0.0 0.0 621.0 151.0 0 0 0 0

MA1144.1_rc_shift5 (FOSL2::JUND_rc)
; oligos_8nt_mkv5_m31 versus MA1144.1_rc (FOSL2::JUND_rc); m=19/83; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.720498; -----rTGAsTCAym---- ; cor=; Ncor= a 0 0 0 0 0 583.0 0.0 0.0 934.0 58.0 0.0 10.0 999.0 14.0 275.0 0 0 0 0 c 0 0 0 0 0 113.0 0.0 0.0 60.0 292.0 0.0 990.0 0.0 291.0 446.0 0 0 0 0 g 0 0 0 0 0 266.0 0.0 860.0 0.0 604.0 1.0 0.0 0.0 60.0 143.0 0 0 0 0 t 0 0 0 0 0 38.0 999.0 140.0 6.0 46.0 998.0 0.0 0.0 634.0 137.0 0 0 0 0

MA1132.1_rc_shift5 (JUN::JUNB_rc)
; oligos_8nt_mkv5_m31 versus MA1132.1_rc (JUN::JUNB_rc); m=20/83; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.715628; -----aTGmGTCAtm---- ; cor=; Ncor= a 0 0 0 0 0 500.0 27.0 122.0 565.0 33.0 18.0 47.0 946.0 50.0 261.0 0 0 0 0 c 0 0 0 0 0 64.0 18.0 10.0 353.0 115.0 28.0 921.0 34.0 189.0 408.0 0 0 0 0 g 0 0 0 0 0 248.0 24.0 707.0 24.0 826.0 10.0 21.0 10.0 134.0 128.0 0 0 0 0 t 0 0 0 0 0 188.0 931.0 161.0 58.0 27.0 944.0 10.0 11.0 627.0 203.0 0 0 0 0

MA0478.1_shift3 (FOSL2)
; oligos_8nt_mkv5_m31 versus MA0478.1 (FOSL2); m=21/83; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.701905; ---krrTGAsTCAb----- ; cor=; Ncor= a 0 0 0 833.0 1525.0 2861.0 0.0 0.0 5075.0 0.0 0.0 205.0 5318.0 0.0 0 0 0 0 0 c 0 0 0 994.0 592.0 55.0 0.0 0.0 51.0 3286.0 0.0 5113.0 0.0 1399.0 0 0 0 0 0 g 0 0 0 2086.0 2707.0 2328.0 0.0 5318.0 192.0 1838.0 0.0 0.0 0.0 1933.0 0 0 0 0 0 t 0 0 0 1405.0 494.0 74.0 5318.0 0.0 0.0 194.0 5318.0 0.0 0.0 1986.0 0 0 0 0 0

MA1633.1_rc_shift2 (BACH1_rc)
; oligos_8nt_mkv5_m31 versus MA1633.1_rc (BACH1_rc); m=22/83; ncol2=13; w=12; offset=-1; strand=R; shift=2; score=0.671389; --wtGCTGAGTCAts---- ; cor=; Ncor= a 0 0 3938.0 2620.0 548.0 1545.0 275.0 240.0 14421.0 434.0 114.0 480.0 15036.0 947.0 3519.0 0 0 0 0 c 0 0 3553.0 1971.0 858.0 13050.0 310.0 178.0 266.0 2083.0 167.0 14831.0 149.0 3848.0 4835.0 0 0 0 0 g 0 0 3574.0 2167.0 13382.0 623.0 194.0 14563.0 220.0 12597.0 230.0 149.0 267.0 3833.0 3946.0 0 0 0 0 t 0 0 4492.0 8799.0 769.0 339.0 14778.0 576.0 650.0 443.0 15046.0 97.0 105.0 6929.0 3257.0 0 0 0 0

MA1639.1_shift2 (MEIS1(var.2))
; oligos_8nt_mkv5_m31 versus MA1639.1 (MEIS1(var.2)); m=23/83; ncol2=13; w=12; offset=-1; strand=D; shift=2; score=0.649229; --rhcATmAATCAww---- ; cor=; Ncor= a 0 0 1824.0 1864.0 970.0 6383.0 80.0 2295.0 6063.0 6112.0 127.0 156.0 5433.0 1735.0 1872.0 0 0 0 0 c 0 0 1425.0 1979.0 4571.0 61.0 69.0 3580.0 336.0 214.0 87.0 6367.0 279.0 1504.0 1542.0 0 0 0 0 g 0 0 1902.0 762.0 183.0 218.0 83.0 252.0 33.0 192.0 63.0 61.0 152.0 934.0 1261.0 0 0 0 0 t 0 0 1585.0 2131.0 1012.0 74.0 6504.0 609.0 304.0 218.0 6459.0 152.0 872.0 2563.0 2061.0 0 0 0 0

MA0655.1_rc_shift5 (JDP2_rc)
; oligos_8nt_mkv5_m31 versus MA0655.1_rc (JDP2_rc); m=24/83; ncol2=9; w=9; offset=2; strand=R; shift=5; score=0.623288; -----ATGASTCAT----- ; cor=; Ncor= a 0 0 0 0 0 1634.0 7.0 9.0 1634.0 13.0 25.0 22.0 1634.0 8.0 0 0 0 0 0 c 0 0 0 0 0 5.0 0.0 3.0 6.0 434.0 2.0 1634.0 1.0 140.0 0 0 0 0 0 g 0 0 0 0 0 404.0 0.0 1634.0 0.0 1200.0 1.0 3.0 6.0 19.0 0 0 0 0 0 t 0 0 0 0 0 22.0 1634.0 22.0 6.0 14.0 1634.0 0.0 5.0 1634.0 0 0 0 0 0

MA0489.1_shift0 (JUN(var.2))
; oligos_8nt_mkv5_m31 versus MA0489.1 (JUN(var.2)); m=25/83; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.568594; rrrrrrTGAsTCAt----- ; cor=; Ncor= a 4852.0 3927.0 3726.0 4396.0 4146.0 5930.0 0.0 0.0 10953.0 382.0 199.0 956.0 10956.0 376.0 0 0 0 0 0 c 1250.0 1324.0 1127.0 1122.0 593.0 993.0 0.0 0.0 0.0 5704.0 0.0 10000.0 0.0 2509.0 0 0 0 0 0 g 2818.0 4110.0 4330.0 3461.0 4213.0 4033.0 0.0 10956.0 0.0 4090.0 0.0 0.0 0.0 2645.0 0 0 0 0 0 t 2036.0 1595.0 1773.0 1977.0 2004.0 0.0 10956.0 0.0 3.0 780.0 10757.0 0.0 0.0 5426.0 0 0 0 0 0

MA0496.3_rc_shift1 (MAFK_rc)
; oligos_8nt_mkv5_m31 versus MA0496.3_rc (MAFK_rc); m=26/83; ncol2=15; w=12; offset=-2; strand=R; shift=1; score=0.566869; -wwkGCTGAGTCAkca--- ; cor=; Ncor= a 0 18619.0 14552.0 8204.0 2285.0 4361.0 1910.0 1087.0 46798.0 2544.0 1274.0 2565.0 47492.0 3939.0 9573.0 19030.0 0 0 0 c 0 8541.0 10512.0 4590.0 3327.0 44013.0 1267.0 957.0 1081.0 7573.0 1306.0 46695.0 1058.0 6706.0 21904.0 9969.0 0 0 0 g 0 9756.0 10737.0 14138.0 43458.0 1921.0 882.0 47872.0 1133.0 39125.0 1670.0 1366.0 1568.0 27000.0 10655.0 10789.0 0 0 0 t 0 14818.0 15933.0 24802.0 2664.0 1439.0 47675.0 1818.0 2722.0 2492.0 47484.0 1108.0 1616.0 14089.0 9602.0 11946.0 0 0 0

MA1101.2_rc_shift0 (BACH2_rc)
; oligos_8nt_mkv5_m31 versus MA1101.2_rc (BACH2_rc); m=27/83; ncol2=19; w=12; offset=-3; strand=R; shift=0; score=0.501252; awabsATGAsTCATGstwt ; cor=; Ncor= a 26118.0 39012.0 54749.0 11783.0 5274.0 63746.0 0.0 3.0 67975.0 18.0 6.0 54.0 68266.0 0.0 8116.0 13391.0 15405.0 24469.0 15601.0 c 11268.0 8221.0 7650.0 19155.0 30498.0 2028.0 11.0 0.0 856.0 30785.0 13.0 68240.0 1.0 15304.0 6727.0 21257.0 8490.0 9605.0 13720.0 g 15623.0 10703.0 13438.0 17682.0 35220.0 11634.0 2.0 68215.0 20.0 37438.0 1088.0 0.0 7.0 260.0 61580.0 21218.0 5534.0 8823.0 12203.0 t 15261.0 23586.0 18457.0 19650.0 4522.0 47.0 68264.0 115.0 3.0 50.0 67846.0 6.0 1.0 62993.0 9369.0 12404.0 59307.0 38327.0 26746.0

MA0912.2_rc_shift2 (HOXD3_rc)
; oligos_8nt_mkv5_m31 versus MA0912.2_rc (HOXD3_rc); m=28/83; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.460557; --gTAATTAG--------- ; cor=; Ncor= a 0 0 1674.0 0.0 14562.0 14562.0 0.0 0.0 14562.0 2947.0 0 0 0 0 0 0 0 0 0 c 0 0 3187.0 2198.0 4453.0 0.0 0.0 0.0 0.0 827.0 0 0 0 0 0 0 0 0 0 g 0 0 8987.0 0.0 0.0 0.0 0.0 742.0 94.0 11615.0 0 0 0 0 0 0 0 0 0 t 0 0 714.0 14562.0 0.0 0.0 14562.0 14562.0 0.0 276.0 0 0 0 0 0 0 0 0 0

MA0902.2_shift2 (HOXB2)
; oligos_8nt_mkv5_m31 versus MA0902.2 (HOXB2); m=29/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.452235; --symATTAs--------- ; cor=; Ncor= a 0 0 807.0 51.0 6827.0 6827.0 0.0 0.0 6827.0 1273.0 0 0 0 0 0 0 0 0 0 c 0 0 2038.0 2834.0 3276.0 0.0 0.0 0.0 0.0 2031.0 0 0 0 0 0 0 0 0 0 g 0 0 2925.0 0.0 199.0 0.0 0.0 1876.0 0.0 2933.0 0 0 0 0 0 0 0 0 0 t 0 0 1056.0 3993.0 0.0 0.0 6827.0 6827.0 0.0 589.0 0 0 0 0 0 0 0 0 0

MA0893.2_shift2 (GSX2)
; oligos_8nt_mkv5_m31 versus MA0893.2 (GSX2); m=30/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.449925; --symATTAr--------- ; cor=; Ncor= a 0 0 816.0 503.0 2775.0 4998.0 0.0 0.0 4998.0 2158.0 0 0 0 0 0 0 0 0 0 c 0 0 2277.0 2611.0 2223.0 0.0 121.0 0.0 0.0 659.0 0 0 0 0 0 0 0 0 0 g 0 0 2721.0 400.0 95.0 708.0 0.0 77.0 1005.0 2840.0 0 0 0 0 0 0 0 0 0 t 0 0 0.0 4998.0 29.0 0.0 4998.0 4998.0 20.0 918.0 0 0 0 0 0 0 0 0 0

MA0875.1_shift2 (BARX1)
; oligos_8nt_mkv5_m31 versus MA0875.1 (BARX1); m=31/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.449466; --vcmATTAr--------- ; cor=; Ncor= a 0 0 1872.0 590.0 3339.0 6805.0 0.0 0.0 6805.0 1917.0 0 0 0 0 0 0 0 0 0 c 0 0 1821.0 5138.0 1992.0 207.0 0.0 0.0 0.0 1391.0 0 0 0 0 0 0 0 0 0 g 0 0 2236.0 246.0 1386.0 192.0 0.0 0.0 0.0 2420.0 0 0 0 0 0 0 0 0 0 t 0 0 877.0 1667.0 87.0 0.0 6805.0 6805.0 0.0 1077.0 0 0 0 0 0 0 0 0 0

MA0132.2_shift2 (PDX1)
; oligos_8nt_mkv5_m31 versus MA0132.2 (PDX1); m=32/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.448655; --symATTAr--------- ; cor=; Ncor= a 0 0 1483.0 292.0 4839.0 7130.0 0.0 0.0 7130.0 2181.0 0 0 0 0 0 0 0 0 0 c 0 0 2206.0 2469.0 2291.0 45.0 0.0 0.0 0.0 1216.0 0 0 0 0 0 0 0 0 0 g 0 0 2441.0 0.0 185.0 0.0 0.0 0.0 0.0 2881.0 0 0 0 0 0 0 0 0 0 t 0 0 999.0 4661.0 78.0 0.0 7130.0 7130.0 0.0 852.0 0 0 0 0 0 0 0 0 0

MA1499.1_shift2 (HOXB4)
; oligos_8nt_mkv5_m31 versus MA1499.1 (HOXB4); m=33/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.444032; --rTmATTAr--------- ; cor=; Ncor= a 0 0 4683.0 0.0 3621.0 9080.0 0.0 0.0 9080.0 4397.0 0 0 0 0 0 0 0 0 0 c 0 0 1377.0 2103.0 5459.0 0.0 0.0 0.0 0.0 1409.0 0 0 0 0 0 0 0 0 0 g 0 0 4397.0 0.0 0.0 265.0 0.0 271.0 55.0 4683.0 0 0 0 0 0 0 0 0 0 t 0 0 1021.0 9080.0 0.0 0.0 9080.0 9080.0 0.0 1388.0 0 0 0 0 0 0 0 0 0

MA0067.1_shift8 (Pax2)
; oligos_8nt_mkv5_m31 versus MA0067.1 (Pax2); m=34/83; ncol2=8; w=7; offset=5; strand=D; shift=8; score=0.443909; --------wgTCAykb--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10.0 7.0 3.0 0.0 26.0 2.0 2.0 1.0 0 0 0 c 0 0 0 0 0 0 0 0 7.0 1.0 2.0 28.0 1.0 17.0 0.0 11.0 0 0 0 g 0 0 0 0 0 0 0 0 5.0 21.0 0.0 1.0 3.0 1.0 19.0 11.0 0 0 0 t 0 0 0 0 0 0 0 0 9.0 2.0 26.0 2.0 1.0 11.0 10.0 8.0 0 0 0

MA0876.1_shift2 (BSX)
; oligos_8nt_mkv5_m31 versus MA0876.1 (BSX); m=35/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.44132; --symATTAv--------- ; cor=; Ncor= a 0 0 1449.0 688.0 4036.0 8832.0 0.0 96.0 8832.0 2770.0 0 0 0 0 0 0 0 0 0 c 0 0 3929.0 5585.0 2483.0 194.0 0.0 0.0 0.0 2369.0 0 0 0 0 0 0 0 0 0 g 0 0 2290.0 103.0 2197.0 1078.0 0.0 0.0 0.0 2417.0 0 0 0 0 0 0 0 0 0 t 0 0 1164.0 3247.0 116.0 66.0 8832.0 8832.0 0.0 1276.0 0 0 0 0 0 0 0 0 0

MA1507.1_shift2 (HOXD4)
; oligos_8nt_mkv5_m31 versus MA1507.1 (HOXD4); m=36/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.437989; --rYmATTAr--------- ; cor=; Ncor= a 0 0 1186.0 0.0 1542.0 3405.0 0.0 0.0 3405.0 1102.0 0 0 0 0 0 0 0 0 0 c 0 0 705.0 1184.0 1862.0 0.0 0.0 0.0 0.0 525.0 0 0 0 0 0 0 0 0 0 g 0 0 1155.0 0.0 0.0 176.0 0.0 0.0 194.0 1147.0 0 0 0 0 0 0 0 0 0 t 0 0 359.0 3405.0 0.0 0.0 3405.0 3405.0 0.0 631.0 0 0 0 0 0 0 0 0 0

MA0158.2_shift2 (HOXA5)
; oligos_8nt_mkv5_m31 versus MA0158.2 (HOXA5); m=37/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.437176; --symATTAs--------- ; cor=; Ncor= a 0 0 142.0 0.0 3130.0 3130.0 0.0 0.0 3130.0 480.0 0 0 0 0 0 0 0 0 0 c 0 0 832.0 1052.0 1632.0 0.0 0.0 0.0 0.0 1463.0 0 0 0 0 0 0 0 0 0 g 0 0 1759.0 0.0 81.0 0.0 0.0 885.0 0.0 1133.0 0 0 0 0 0 0 0 0 0 t 0 0 397.0 2078.0 0.0 0.0 3130.0 3130.0 0.0 54.0 0 0 0 0 0 0 0 0 0

MA0723.1_rc_shift2 (VAX2_rc)
; oligos_8nt_mkv5_m31 versus MA0723.1_rc (VAX2_rc); m=38/83; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.436412; --gTmATTAr--------- ; cor=; Ncor= a 0 0 3069.0 562.0 14297.0 14297.0 218.0 565.0 14297.0 6482.0 0 0 0 0 0 0 0 0 0 c 0 0 2869.0 3818.0 5673.0 564.0 94.0 414.0 221.0 1384.0 0 0 0 0 0 0 0 0 0 g 0 0 5648.0 179.0 987.0 161.0 213.0 2781.0 2823.0 7816.0 0 0 0 0 0 0 0 0 0 t 0 0 2711.0 14297.0 1341.0 576.0 14297.0 14297.0 1410.0 921.0 0 0 0 0 0 0 0 0 0

MA1496.1_shift2 (HOXA4)
; oligos_8nt_mkv5_m31 versus MA1496.1 (HOXA4); m=39/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.435048; --rYmATTAr--------- ; cor=; Ncor= a 0 0 1089.0 0.0 893.0 2454.0 0.0 0.0 2454.0 636.0 0 0 0 0 0 0 0 0 0 c 0 0 397.0 967.0 1561.0 0.0 0.0 173.0 146.0 593.0 0 0 0 0 0 0 0 0 0 g 0 0 1365.0 0.0 176.0 684.0 39.0 171.0 260.0 840.0 0 0 0 0 0 0 0 0 0 t 0 0 94.0 2454.0 0.0 0.0 2454.0 2454.0 0.0 385.0 0 0 0 0 0 0 0 0 0

MA1504.1_shift2 (HOXC4)
; oligos_8nt_mkv5_m31 versus MA1504.1 (HOXC4); m=40/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.434171; --rYmATTAr--------- ; cor=; Ncor= a 0 0 2731.0 188.0 3607.0 8759.0 0.0 0.0 8759.0 2776.0 0 0 0 0 0 0 0 0 0 c 0 0 1867.0 3111.0 5152.0 0.0 0.0 0.0 0.0 1679.0 0 0 0 0 0 0 0 0 0 g 0 0 2809.0 0.0 0.0 583.0 0.0 0.0 825.0 2713.0 0 0 0 0 0 0 0 0 0 t 0 0 1353.0 8759.0 0.0 0.0 8759.0 8759.0 0.0 1592.0 0 0 0 0 0 0 0 0 0

MA0903.1_shift1 (HOXB3)
; oligos_8nt_mkv5_m31 versus MA0903.1 (HOXB3); m=41/83; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.43291; -asymATTArc-------- ; cor=; Ncor= a 0 4500.0 2554.0 1744.0 7793.0 12899.0 0.0 441.0 12899.0 4542.0 3199.0 0 0 0 0 0 0 0 0 c 0 2526.0 4145.0 4979.0 5106.0 545.0 150.0 839.0 119.0 2119.0 3995.0 0 0 0 0 0 0 0 0 g 0 3151.0 4005.0 604.0 838.0 640.0 0.0 0.0 0.0 4732.0 2981.0 0 0 0 0 0 0 0 0 t 0 2722.0 2194.0 7920.0 697.0 242.0 12899.0 12899.0 574.0 1506.0 2724.0 0 0 0 0 0 0 0 0

MA0722.1_rc_shift2 (VAX1_rc)
; oligos_8nt_mkv5_m31 versus MA0722.1_rc (VAX1_rc); m=42/83; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.431891; --rTaATTAr--------- ; cor=; Ncor= a 0 0 1433.0 398.0 5253.0 5253.0 133.0 302.0 5253.0 2479.0 0 0 0 0 0 0 0 0 0 c 0 0 933.0 1332.0 1951.0 213.0 46.0 189.0 101.0 455.0 0 0 0 0 0 0 0 0 0 g 0 0 1911.0 87.0 321.0 86.0 153.0 863.0 995.0 2775.0 0 0 0 0 0 0 0 0 0 t 0 0 977.0 5253.0 508.0 297.0 5253.0 5253.0 679.0 447.0 0 0 0 0 0 0 0 0 0

MA0612.2_shift2 (EMX1)
; oligos_8nt_mkv5_m31 versus MA0612.2 (EMX1); m=43/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.431548; --sTAATTAs--------- ; cor=; Ncor= a 0 0 1276.0 19.0 9544.0 9544.0 0.0 0.0 9544.0 1333.0 0 0 0 0 0 0 0 0 0 c 0 0 3425.0 2263.0 1235.0 0.0 0.0 0.0 0.0 2633.0 0 0 0 0 0 0 0 0 0 g 0 0 3066.0 0.0 0.0 0.0 0.0 933.0 0.0 4516.0 0 0 0 0 0 0 0 0 0 t 0 0 1777.0 7281.0 0.0 0.0 9544.0 9544.0 0.0 1062.0 0 0 0 0 0 0 0 0 0

MA1498.1_shift2 (HOXA7)
; oligos_8nt_mkv5_m31 versus MA1498.1 (HOXA7); m=44/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.430345; --gymATTAc--------- ; cor=; Ncor= a 0 0 481.0 0.0 4227.0 4227.0 0.0 159.0 4227.0 828.0 0 0 0 0 0 0 0 0 0 c 0 0 839.0 2319.0 3335.0 83.0 0.0 0.0 0.0 1720.0 0 0 0 0 0 0 0 0 0 g 0 0 2302.0 9.0 417.0 25.0 0.0 815.0 0.0 977.0 0 0 0 0 0 0 0 0 0 t 0 0 605.0 1908.0 226.0 148.0 4227.0 4227.0 0.0 702.0 0 0 0 0 0 0 0 0 0

MA0888.1_shift1 (EVX2)
; oligos_8nt_mkv5_m31 versus MA0888.1 (EVX2); m=45/83; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.428623; -svTaATTAgc-------- ; cor=; Ncor= a 0 4411.0 5143.0 2541.0 10108.0 20419.0 5.0 303.0 20419.0 4090.0 3778.0 0 0 0 0 0 0 0 0 c 0 5113.0 6306.0 5669.0 5018.0 156.0 166.0 863.0 0.0 4858.0 7715.0 0 0 0 0 0 0 0 0 g 0 7814.0 7041.0 969.0 4541.0 881.0 702.0 445.0 1559.0 7789.0 4997.0 0 0 0 0 0 0 0 0 t 0 3082.0 1929.0 20419.0 752.0 0.0 20419.0 20419.0 446.0 3682.0 3930.0 0 0 0 0 0 0 0 0

MA0726.1_rc_shift2 (VSX2_rc)
; oligos_8nt_mkv5_m31 versus MA0726.1_rc (VSX2_rc); m=46/83; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.428057; --cTAATTAr--------- ; cor=; Ncor= a 0 0 3387.0 1014.0 13809.0 13809.0 63.0 402.0 13809.0 4255.0 0 0 0 0 0 0 0 0 0 c 0 0 4288.0 2109.0 447.0 92.0 123.0 343.0 363.0 445.0 0 0 0 0 0 0 0 0 0 g 0 0 3243.0 321.0 567.0 186.0 124.0 397.0 2725.0 9554.0 0 0 0 0 0 0 0 0 0 t 0 0 2891.0 13809.0 626.0 118.0 13809.0 13809.0 1080.0 427.0 0 0 0 0 0 0 0 0 0

MA0658.1_rc_shift1 (LHX6_rc)
; oligos_8nt_mkv5_m31 versus MA0658.1_rc (LHX6_rc); m=47/83; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.426326; -ryTAATTAgy-------- ; cor=; Ncor= a 0 1507.0 194.0 2.0 4438.0 4438.0 0.0 0.0 4438.0 1422.0 264.0 0 0 0 0 0 0 0 0 c 0 728.0 2769.0 243.0 108.0 15.0 0.0 487.0 28.0 791.0 1548.0 0 0 0 0 0 0 0 0 g 0 1654.0 637.0 0.0 766.0 98.0 14.0 90.0 253.0 3015.0 769.0 0 0 0 0 0 0 0 0 t 0 548.0 1668.0 4438.0 0.0 0.0 4438.0 4438.0 0.0 529.0 1857.0 0 0 0 0 0 0 0 0

MA0725.1_rc_shift2 (VSX1_rc)
; oligos_8nt_mkv5_m31 versus MA0725.1_rc (VSX1_rc); m=48/83; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.426234; --vTAATTAr--------- ; cor=; Ncor= a 0 0 3732.0 1372.0 13572.0 13572.0 90.0 554.0 13572.0 5119.0 0 0 0 0 0 0 0 0 0 c 0 0 3658.0 3337.0 984.0 103.0 172.0 553.0 572.0 561.0 0 0 0 0 0 0 0 0 0 g 0 0 3555.0 516.0 761.0 199.0 154.0 626.0 3131.0 8453.0 0 0 0 0 0 0 0 0 0 t 0 0 2626.0 13572.0 898.0 172.0 13572.0 13572.0 1836.0 756.0 0 0 0 0 0 0 0 0 0

MA1500.1_rc_shift2 (HOXB6_rc)
; oligos_8nt_mkv5_m31 versus MA1500.1_rc (HOXB6_rc); m=49/83; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.425587; --gymATTAa--------- ; cor=; Ncor= a 0 0 1324.0 0.0 6192.0 6192.0 0.0 564.0 6192.0 3724.0 0 0 0 0 0 0 0 0 0 c 0 0 996.0 3064.0 4139.0 727.0 0.0 0.0 0.0 2395.0 0 0 0 0 0 0 0 0 0 g 0 0 4868.0 0.0 926.0 436.0 0.0 647.0 710.0 2468.0 0 0 0 0 0 0 0 0 0 t 0 0 691.0 3128.0 403.0 0.0 6192.0 6192.0 0.0 1357.0 0 0 0 0 0 0 0 0 0

MA0900.2_shift2 (HOXA2)
; oligos_8nt_mkv5_m31 versus MA0900.2 (HOXA2); m=50/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.42472; --sTMATTAs--------- ; cor=; Ncor= a 0 0 8880.0 0.0 39674.0 56949.0 0.0 0.0 56949.0 10641.0 0 0 0 0 0 0 0 0 0 c 0 0 19452.0 3636.0 17275.0 0.0 0.0 0.0 0.0 16330.0 0 0 0 0 0 0 0 0 0 g 0 0 22686.0 0.0 290.0 0.0 0.0 0.0 2052.0 22246.0 0 0 0 0 0 0 0 0 0 t 0 0 5931.0 56949.0 0.0 0.0 56949.0 56949.0 0.0 7731.0 0 0 0 0 0 0 0 0 0

MA0630.1_rc_shift2 (SHOX_rc)
; oligos_8nt_mkv5_m31 versus MA0630.1_rc (SHOX_rc); m=51/83; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.424473; --yyAATTAr--------- ; cor=; Ncor= a 0 0 133.0 111.0 768.0 943.0 2.0 45.0 886.0 357.0 0 0 0 0 0 0 0 0 0 c 0 0 379.0 424.0 84.0 27.0 5.0 55.0 9.0 162.0 0 0 0 0 0 0 0 0 0 g 0 0 187.0 48.0 50.0 15.0 2.0 48.0 30.0 301.0 0 0 0 0 0 0 0 0 0 t 0 0 301.0 416.0 98.0 15.0 991.0 852.0 74.0 179.0 0 0 0 0 0 0 0 0 0

MA1577.1_shift2 (TLX2)
; oligos_8nt_mkv5_m31 versus MA1577.1 (TLX2); m=52/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.424275; --yyAATTAr--------- ; cor=; Ncor= a 0 0 997.0 1435.0 7799.0 7799.0 0.0 0.0 7799.0 2184.0 0 0 0 0 0 0 0 0 0 c 0 0 2572.0 7799.0 0.0 0.0 0.0 0.0 0.0 1323.0 0 0 0 0 0 0 0 0 0 g 0 0 1851.0 1112.0 80.0 0.0 0.0 0.0 0.0 3439.0 0 0 0 0 0 0 0 0 0 t 0 0 2379.0 8156.0 0.0 0.0 7799.0 7799.0 0.0 852.0 0 0 0 0 0 0 0 0 0

MA0648.1_rc_shift1 (GSC_rc)
; oligos_8nt_mkv5_m31 versus MA0648.1_rc (GSC_rc); m=53/83; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.423324; -rsGGATTArs-------- ; cor=; Ncor= a 0 2168.0 1115.0 1099.0 787.0 6081.0 0.0 89.0 6081.0 1688.0 882.0 0 0 0 0 0 0 0 0 c 0 619.0 1732.0 828.0 452.0 144.0 0.0 176.0 0.0 553.0 2039.0 0 0 0 0 0 0 0 0 g 0 2197.0 2398.0 6081.0 6081.0 25.0 0.0 71.0 54.0 2885.0 1912.0 0 0 0 0 0 0 0 0 t 0 1097.0 836.0 315.0 416.0 0.0 6081.0 6081.0 0.0 955.0 1249.0 0 0 0 0 0 0 0 0

MA0724.1_shift1 (VENTX)
; oligos_8nt_mkv5_m31 versus MA0724.1 (VENTX); m=54/83; ncol2=9; w=7; offset=-2; strand=D; shift=1; score=0.422958; -AmCrATTAr--------- ; cor=; Ncor= a 0 17344.0 9981.0 562.0 7795.0 23923.0 0.0 0.0 23923.0 8820.0 0 0 0 0 0 0 0 0 0 c 0 983.0 13942.0 23923.0 5650.0 203.0 0.0 0.0 0.0 706.0 0 0 0 0 0 0 0 0 0 g 0 1934.0 6941.0 0.0 16128.0 0.0 0.0 0.0 0.0 15103.0 0 0 0 0 0 0 0 0 0 t 0 3662.0 5912.0 3964.0 626.0 74.0 23923.0 23923.0 0.0 2189.0 0 0 0 0 0 0 0 0 0

MA1518.1_shift2 (LHX1)
; oligos_8nt_mkv5_m31 versus MA1518.1 (LHX1); m=55/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.421869; --syaATtAs--------- ; cor=; Ncor= a 0 0 2684.0 949.0 14954.0 14954.0 0.0 1101.0 14954.0 3023.0 0 0 0 0 0 0 0 0 0 c 0 0 4118.0 9230.0 4878.0 270.0 0.0 5413.0 495.0 5037.0 0 0 0 0 0 0 0 0 0 g 0 0 5234.0 572.0 4035.0 39.0 0.0 3100.0 617.0 3908.0 0 0 0 0 0 0 0 0 0 t 0 0 2918.0 5724.0 2084.0 569.0 14954.0 14954.0 2105.0 2986.0 0 0 0 0 0 0 0 0 0

MA0705.1_rc_shift2 (Lhx8_rc)
; oligos_8nt_mkv5_m31 versus MA0705.1_rc (Lhx8_rc); m=56/83; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.421394; --yYRATTRg--------- ; cor=; Ncor= a 0 0 414.0 0.0 5092.0 5092.0 0.0 0.0 5092.0 1108.0 0 0 0 0 0 0 0 0 0 c 0 0 2156.0 1929.0 88.0 0.0 0.0 1670.0 0.0 925.0 0 0 0 0 0 0 0 0 0 g 0 0 1156.0 0.0 2083.0 0.0 0.0 160.0 1996.0 2588.0 0 0 0 0 0 0 0 0 0 t 0 0 1366.0 5092.0 0.0 0.0 5092.0 5092.0 0.0 472.0 0 0 0 0 0 0 0 0 0

MA0891.1_rc_shift1 (GSC2_rc)
; oligos_8nt_mkv5_m31 versus MA0891.1_rc (GSC2_rc); m=57/83; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.421345; -dsgGATTArg-------- ; cor=; Ncor= a 0 525.0 444.0 439.0 204.0 2016.0 132.0 201.0 2016.0 630.0 427.0 0 0 0 0 0 0 0 0 c 0 168.0 698.0 422.0 179.0 145.0 0.0 56.0 0.0 190.0 442.0 0 0 0 0 0 0 0 0 g 0 814.0 668.0 2016.0 2016.0 41.0 11.0 87.0 0.0 839.0 686.0 0 0 0 0 0 0 0 0 t 0 509.0 205.0 182.0 255.0 0.0 2016.0 2016.0 116.0 356.0 461.0 0 0 0 0 0 0 0 0

MA0068.2_rc_shift2 (PAX4_rc)
; oligos_8nt_mkv5_m31 versus MA0068.2_rc (PAX4_rc); m=58/83; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.42046; --cTAATTag--------- ; cor=; Ncor= a 0 0 41.0 12.0 333.0 333.0 0.0 3.0 333.0 105.0 0 0 0 0 0 0 0 0 0 c 0 0 333.0 11.0 10.0 5.0 0.0 0.0 120.0 47.0 0 0 0 0 0 0 0 0 0 g 0 0 93.0 89.0 11.0 0.0 0.0 2.0 30.0 333.0 0 0 0 0 0 0 0 0 0 t 0 0 150.0 333.0 18.0 0.0 333.0 333.0 58.0 37.0 0 0 0 0 0 0 0 0 0

MA1502.1_shift2 (HOXB8)
; oligos_8nt_mkv5_m31 versus MA1502.1 (HOXB8); m=59/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.418114; --gymATTAm--------- ; cor=; Ncor= a 0 0 522.0 0.0 4474.0 4474.0 0.0 284.0 4474.0 1174.0 0 0 0 0 0 0 0 0 0 c 0 0 536.0 2560.0 3374.0 0.0 0.0 0.0 0.0 1704.0 0 0 0 0 0 0 0 0 0 g 0 0 2779.0 0.0 89.0 0.0 0.0 542.0 0.0 830.0 0 0 0 0 0 0 0 0 0 t 0 0 637.0 1914.0 0.0 0.0 4474.0 4474.0 0.0 766.0 0 0 0 0 0 0 0 0 0

MA0027.2_shift2 (EN1)
; oligos_8nt_mkv5_m31 versus MA0027.2 (EN1); m=60/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.417635; --syAATTAg--------- ; cor=; Ncor= a 0 0 427.0 104.0 2891.0 2891.0 0.0 57.0 2891.0 689.0 0 0 0 0 0 0 0 0 0 c 0 0 1174.0 1328.0 99.0 28.0 0.0 483.0 0.0 683.0 0 0 0 0 0 0 0 0 0 g 0 0 765.0 5.0 71.0 0.0 0.0 162.0 30.0 1216.0 0 0 0 0 0 0 0 0 0 t 0 0 525.0 1562.0 0.0 0.0 2891.0 2891.0 132.0 302.0 0 0 0 0 0 0 0 0 0

MA0717.1_shift2 (RAX2)
; oligos_8nt_mkv5_m31 versus MA0717.1 (RAX2); m=61/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.417532; --yyAATTAr--------- ; cor=; Ncor= a 0 0 5334.0 3558.0 38860.0 38860.0 270.0 2167.0 38860.0 13411.0 0 0 0 0 0 0 0 0 0 c 0 0 15810.0 19645.0 3060.0 1523.0 738.0 4232.0 2644.0 7487.0 0 0 0 0 0 0 0 0 0 g 0 0 7049.0 1688.0 4490.0 757.0 125.0 2513.0 360.0 12362.0 0 0 0 0 0 0 0 0 0 t 0 0 10666.0 19215.0 2421.0 1030.0 38860.0 38860.0 4258.0 5601.0 0 0 0 0 0 0 0 0 0

MA0892.1_shift1 (GSX1)
; oligos_8nt_mkv5_m31 versus MA0892.1 (GSX1); m=62/83; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.416578; -mcymATTArh-------- ; cor=; Ncor= a 0 331.0 164.0 124.0 781.0 1183.0 90.0 106.0 1183.0 448.0 350.0 0 0 0 0 0 0 0 0 c 0 391.0 535.0 450.0 402.0 106.0 79.0 106.0 0.0 249.0 305.0 0 0 0 0 0 0 0 0 g 0 209.0 258.0 48.0 60.0 123.0 3.0 0.0 9.0 313.0 214.0 0 0 0 0 0 0 0 0 t 0 252.0 226.0 733.0 177.0 50.0 1183.0 1183.0 103.0 173.0 315.0 0 0 0 0 0 0 0 0

MA0887.1_shift1 (EVX1)
; oligos_8nt_mkv5_m31 versus MA0887.1 (EVX1); m=63/83; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.415232; -gvtaATTAsc-------- ; cor=; Ncor= a 0 1959.0 2045.0 1196.0 3899.0 7894.0 0.0 232.0 7894.0 1333.0 1432.0 0 0 0 0 0 0 0 0 c 0 1806.0 2506.0 2343.0 1752.0 29.0 67.0 463.0 14.0 2098.0 3318.0 0 0 0 0 0 0 0 0 g 0 3092.0 2629.0 269.0 1885.0 236.0 267.0 171.0 725.0 2720.0 1958.0 0 0 0 0 0 0 0 0 t 0 1037.0 714.0 7894.0 358.0 0.0 7894.0 7894.0 172.0 1743.0 1186.0 0 0 0 0 0 0 0 0

MA0720.1_shift2 (Shox2)
; oligos_8nt_mkv5_m31 versus MA0720.1 (Shox2); m=64/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.41406; --yyAATTAr--------- ; cor=; Ncor= a 0 0 2390.0 979.0 18179.0 18179.0 29.0 597.0 18179.0 6542.0 0 0 0 0 0 0 0 0 0 c 0 0 7695.0 9027.0 626.0 138.0 12.0 545.0 193.0 3021.0 0 0 0 0 0 0 0 0 0 g 0 0 3292.0 228.0 426.0 3.0 0.0 870.0 36.0 6337.0 0 0 0 0 0 0 0 0 0 t 0 0 4802.0 9152.0 766.0 79.0 18179.0 18179.0 895.0 2278.0 0 0 0 0 0 0 0 0 0

MA0886.1_shift1 (EMX2)
; oligos_8nt_mkv5_m31 versus MA0886.1 (EMX2); m=65/83; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.414025; -rsTAATTAgs-------- ; cor=; Ncor= a 0 10479.0 5704.0 834.0 37262.0 37262.0 0.0 0.0 37262.0 9139.0 5970.0 0 0 0 0 0 0 0 0 c 0 8412.0 13337.0 7761.0 4938.0 0.0 0.0 0.0 0.0 7124.0 13054.0 0 0 0 0 0 0 0 0 g 0 12802.0 10582.0 0.0 678.0 0.0 0.0 4025.0 0.0 17672.0 10195.0 0 0 0 0 0 0 0 0 t 0 5569.0 7639.0 29501.0 1236.0 0.0 37262.0 37262.0 0.0 3328.0 8043.0 0 0 0 0 0 0 0 0

MA0904.2_rc_shift2 (HOXB5_rc)
; oligos_8nt_mkv5_m31 versus MA0904.2_rc (HOXB5_rc); m=66/83; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.413938; --sTMATKAs--------- ; cor=; Ncor= a 0 0 450.0 0.0 3067.0 3067.0 0.0 0.0 3067.0 294.0 0 0 0 0 0 0 0 0 0 c 0 0 1146.0 564.0 1061.0 0.0 0.0 0.0 0.0 1273.0 0 0 0 0 0 0 0 0 0 g 0 0 1219.0 0.0 26.0 0.0 0.0 1031.0 537.0 1120.0 0 0 0 0 0 0 0 0 0 t 0 0 253.0 3067.0 6.0 0.0 3067.0 3067.0 0.0 381.0 0 0 0 0 0 0 0 0 0

MA1481.1_shift2 (DRGX)
; oligos_8nt_mkv5_m31 versus MA1481.1 (DRGX); m=67/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.412953; --yyAATTAs--------- ; cor=; Ncor= a 0 0 1172.0 1079.0 14867.0 14867.0 0.0 0.0 14867.0 3117.0 0 0 0 0 0 0 0 0 0 c 0 0 8180.0 5997.0 501.0 0.0 0.0 813.0 17.0 4651.0 0 0 0 0 0 0 0 0 0 g 0 0 2692.0 1111.0 2037.0 0.0 0.0 209.0 962.0 3995.0 0 0 0 0 0 0 0 0 0 t 0 0 6687.0 8870.0 0.0 0.0 14867.0 14867.0 144.0 3105.0 0 0 0 0 0 0 0 0 0

MA0721.1_shift2 (UNCX)
; oligos_8nt_mkv5_m31 versus MA0721.1 (UNCX); m=68/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.412459; --yyAATTAr--------- ; cor=; Ncor= a 0 0 4980.0 3975.0 36926.0 36926.0 481.0 3111.0 36926.0 13811.0 0 0 0 0 0 0 0 0 0 c 0 0 13363.0 16800.0 2540.0 1302.0 806.0 3958.0 2211.0 7825.0 0 0 0 0 0 0 0 0 0 g 0 0 5711.0 2086.0 4582.0 420.0 117.0 1782.0 731.0 10480.0 0 0 0 0 0 0 0 0 0 t 0 0 12871.0 20126.0 2629.0 890.0 36926.0 36926.0 3885.0 4810.0 0 0 0 0 0 0 0 0 0

MA0498.2_rc_shift7 (MEIS1_rc)
; oligos_8nt_mkv5_m31 versus MA0498.2_rc (MEIS1_rc); m=69/83; ncol2=7; w=7; offset=4; strand=R; shift=7; score=0.410676; -------cTGTCAw----- ; cor=; Ncor= a 0 0 0 0 0 0 0 15106.0 3861.0 1155.0 0.0 0.0 77159.0 24921.0 0 0 0 0 0 c 0 0 0 0 0 0 0 29965.0 9263.0 0.0 672.0 77159.0 3174.0 9714.0 0 0 0 0 0 g 0 0 0 0 0 0 0 14864.0 0.0 77159.0 2903.0 1249.0 5575.0 18797.0 0 0 0 0 0 t 0 0 0 0 0 0 0 17224.0 77159.0 0.0 77159.0 0.0 8690.0 23727.0 0 0 0 0 0

MA0910.2_shift2 (HOXD8)
; oligos_8nt_mkv5_m31 versus MA0910.2 (HOXD8); m=70/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.410664; --gymATTAm--------- ; cor=; Ncor= a 0 0 537.0 0.0 3629.0 3629.0 0.0 178.0 3629.0 943.0 0 0 0 0 0 0 0 0 0 c 0 0 405.0 2150.0 3006.0 0.0 0.0 0.0 0.0 1683.0 0 0 0 0 0 0 0 0 0 g 0 0 2287.0 0.0 47.0 0.0 0.0 507.0 0.0 551.0 0 0 0 0 0 0 0 0 0 t 0 0 399.0 1480.0 0.0 0.0 3629.0 3629.0 0.0 452.0 0 0 0 0 0 0 0 0 0

MA0628.1_shift1 (POU6F1)
; oligos_8nt_mkv5_m31 versus MA0628.1 (POU6F1); m=71/83; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.409922; -ayTAATTArt-------- ; cor=; Ncor= a 0 507.0 151.0 32.0 905.0 938.0 14.0 18.0 950.0 353.0 89.0 0 0 0 0 0 0 0 0 c 0 193.0 351.0 10.0 70.0 34.0 14.0 8.0 8.0 145.0 211.0 0 0 0 0 0 0 0 0 g 0 211.0 145.0 8.0 8.0 14.0 34.0 70.0 10.0 351.0 193.0 0 0 0 0 0 0 0 0 t 0 89.0 353.0 950.0 18.0 14.0 938.0 905.0 32.0 151.0 507.0 0 0 0 0 0 0 0 0

MA0710.1_shift1 (NOTO)
; oligos_8nt_mkv5_m31 versus MA0710.1 (NOTO); m=72/83; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.409603; -vytMATTArs-------- ; cor=; Ncor= a 0 5631.0 774.0 7097.0 15096.0 21405.0 0.0 374.0 21405.0 7038.0 4078.0 0 0 0 0 0 0 0 0 c 0 5682.0 13986.0 4001.0 6310.0 0.0 0.0 62.0 0.0 3856.0 7711.0 0 0 0 0 0 0 0 0 g 0 6529.0 617.0 573.0 0.0 0.0 0.0 422.0 2057.0 7679.0 5493.0 0 0 0 0 0 0 0 0 t 0 3563.0 7419.0 21405.0 139.0 0.0 21405.0 21405.0 1904.0 2832.0 4124.0 0 0 0 0 0 0 0 0

MA1495.1_rc_shift2 (HOXA1_rc)
; oligos_8nt_mkv5_m31 versus MA1495.1_rc (HOXA1_rc); m=73/83; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.409422; --sTaATTAs--------- ; cor=; Ncor= a 0 0 1182.0 0.0 7406.0 7406.0 0.0 0.0 7406.0 1328.0 0 0 0 0 0 0 0 0 0 c 0 0 2237.0 1576.0 2265.0 0.0 0.0 1244.0 0.0 2667.0 0 0 0 0 0 0 0 0 0 g 0 0 2811.0 0.0 1310.0 0.0 0.0 2083.0 1546.0 2244.0 0 0 0 0 0 0 0 0 0 t 0 0 1175.0 7406.0 0.0 0.0 7406.0 7406.0 0.0 1167.0 0 0 0 0 0 0 0 0 0

MA0704.1_shift2 (Lhx4)
; oligos_8nt_mkv5_m31 versus MA0704.1 (Lhx4); m=74/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.408645; --yTAATTAr--------- ; cor=; Ncor= a 0 0 422.0 217.0 2896.0 2896.0 0.0 0.0 2896.0 1314.0 0 0 0 0 0 0 0 0 0 c 0 0 817.0 912.0 428.0 0.0 0.0 446.0 39.0 449.0 0 0 0 0 0 0 0 0 0 g 0 0 495.0 0.0 309.0 0.0 0.0 57.0 316.0 857.0 0 0 0 0 0 0 0 0 0 t 0 0 1161.0 2896.0 255.0 155.0 2896.0 2896.0 135.0 275.0 0 0 0 0 0 0 0 0 0

MA1463.1_rc_shift1 (ARGFX_rc)
; oligos_8nt_mkv5_m31 versus MA1463.1_rc (ARGFX_rc); m=75/83; ncol2=10; w=8; offset=-2; strand=R; shift=1; score= 0.408; -tyTAATTAgm-------- ; cor=; Ncor= a 0 3158.0 900.0 1048.0 16589.0 16589.0 0.0 4.0 16589.0 4423.0 6479.0 0 0 0 0 0 0 0 0 c 0 2351.0 6249.0 1492.0 0.0 0.0 0.0 0.0 96.0 1748.0 4467.0 0 0 0 0 0 0 0 0 g 0 4098.0 563.0 499.0 44.0 0.0 0.0 46.0 1130.0 16589.0 1750.0 0 0 0 0 0 0 0 0 t 0 6983.0 10340.0 16589.0 0.0 0.0 16589.0 16589.0 270.0 2558.0 3893.0 0 0 0 0 0 0 0 0

MA0661.1_rc_shift1 (MEOX1_rc)
; oligos_8nt_mkv5_m31 versus MA0661.1_rc (MEOX1_rc); m=76/83; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.407093; -gkTAATTAsy-------- ; cor=; Ncor= a 0 506.0 683.0 6.0 3000.0 3000.0 3.0 39.0 3000.0 115.0 405.0 0 0 0 0 0 0 0 0 c 0 614.0 449.0 338.0 328.0 0.0 2.0 151.0 53.0 1363.0 986.0 0 0 0 0 0 0 0 0 g 0 1309.0 911.0 0.0 242.0 29.0 0.0 848.0 406.0 1637.0 704.0 0 0 0 0 0 0 0 0 t 0 572.0 956.0 3000.0 14.0 8.0 3000.0 3000.0 64.0 150.0 906.0 0 0 0 0 0 0 0 0

MA0701.2_shift2 (LHX9)
; oligos_8nt_mkv5_m31 versus MA0701.2 (LHX9); m=77/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.406721; --CyAATTAr--------- ; cor=; Ncor= a 0 0 390.0 0.0 6075.0 6075.0 0.0 0.0 6075.0 2261.0 0 0 0 0 0 0 0 0 0 c 0 0 6075.0 2093.0 505.0 0.0 0.0 0.0 0.0 1013.0 0 0 0 0 0 0 0 0 0 g 0 0 1056.0 0.0 0.0 0.0 0.0 170.0 305.0 1946.0 0 0 0 0 0 0 0 0 0 t 0 0 1219.0 3983.0 20.0 0.0 6075.0 6075.0 0.0 856.0 0 0 0 0 0 0 0 0 0

MA0716.1_shift2 (PRRX1)
; oligos_8nt_mkv5_m31 versus MA0716.1 (PRRX1); m=78/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.406697; --yyAATTAr--------- ; cor=; Ncor= a 0 0 4132.0 2373.0 23897.0 23897.0 0.0 1264.0 23897.0 9498.0 0 0 0 0 0 0 0 0 0 c 0 0 9063.0 11122.0 1088.0 503.0 3.0 2302.0 644.0 4269.0 0 0 0 0 0 0 0 0 0 g 0 0 4339.0 1121.0 1776.0 202.0 0.0 1004.0 136.0 6366.0 0 0 0 0 0 0 0 0 0 t 0 0 6364.0 12775.0 810.0 209.0 23897.0 23897.0 1229.0 3765.0 0 0 0 0 0 0 0 0 0

MA0711.1_rc_shift2 (OTX1_rc)
; oligos_8nt_mkv5_m31 versus MA0711.1_rc (OTX1_rc); m=79/83; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.406428; --sgGATTAr--------- ; cor=; Ncor= a 0 0 4787.0 3363.0 378.0 23441.0 0.0 544.0 23441.0 8636.0 0 0 0 0 0 0 0 0 0 c 0 0 10599.0 8662.0 659.0 3160.0 0.0 254.0 0.0 3186.0 0 0 0 0 0 0 0 0 0 g 0 0 6182.0 23441.0 23441.0 0.0 0.0 0.0 90.0 6501.0 0 0 0 0 0 0 0 0 0 t 0 0 1873.0 789.0 647.0 243.0 23441.0 23441.0 745.0 5118.0 0 0 0 0 0 0 0 0 0

MA0654.1_shift2 (ISX)
; oligos_8nt_mkv5_m31 versus MA0654.1 (ISX); m=80/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.406152; --yyAATTAr--------- ; cor=; Ncor= a 0 0 318.0 10.0 2065.0 2065.0 0.0 0.0 2065.0 770.0 0 0 0 0 0 0 0 0 0 c 0 0 863.0 1003.0 48.0 16.0 0.0 0.0 0.0 307.0 0 0 0 0 0 0 0 0 0 g 0 0 364.0 0.0 5.0 0.0 0.0 24.0 0.0 704.0 0 0 0 0 0 0 0 0 0 t 0 0 520.0 1061.0 24.0 10.0 2065.0 2065.0 49.0 283.0 0 0 0 0 0 0 0 0 0

MA0889.1_shift1 (GBX1)
; oligos_8nt_mkv5_m31 versus MA0889.1 (GBX1); m=81/83; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.405095; -rsyAATTAgc-------- ; cor=; Ncor= a 0 10001.0 1674.0 243.0 27339.0 27339.0 45.0 312.0 27339.0 5720.0 3526.0 0 0 0 0 0 0 0 0 c 0 6727.0 14978.0 13543.0 589.0 172.0 128.0 438.0 50.0 6377.0 11717.0 0 0 0 0 0 0 0 0 g 0 7838.0 6964.0 15.0 758.0 29.0 1.0 246.0 8.0 12203.0 5441.0 0 0 0 0 0 0 0 0 t 0 2774.0 3723.0 13796.0 157.0 23.0 27339.0 27339.0 321.0 3039.0 6655.0 0 0 0 0 0 0 0 0

MA0666.1_shift2 (MSX1)
; oligos_8nt_mkv5_m31 versus MA0666.1 (MSX1); m=82/83; ncol2=8; w=7; offset=-1; strand=D; shift=2; score=0.404693; --syAATTAv--------- ; cor=; Ncor= a 0 0 461.0 82.0 3073.0 3073.0 0.0 63.0 3073.0 855.0 0 0 0 0 0 0 0 0 0 c 0 0 1324.0 2117.0 332.0 107.0 0.0 205.0 118.0 814.0 0 0 0 0 0 0 0 0 0 g 0 0 787.0 33.0 139.0 0.0 31.0 251.0 105.0 945.0 0 0 0 0 0 0 0 0 0 t 0 0 501.0 956.0 16.0 0.0 3073.0 3073.0 91.0 460.0 0 0 0 0 0 0 0 0 0

MA0682.2_rc_shift2 (PITX1_rc)
; oligos_8nt_mkv5_m31 versus MA0682.2_rc (PITX1_rc); m=83/83; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.402949; --gGGATTAr--------- ; cor=; Ncor= a 0 0 2113.0 547.0 141.0 10531.0 0.0 0.0 10531.0 4432.0 0 0 0 0 0 0 0 0 0 c 0 0 1876.0 134.0 0.0 1039.0 0.0 0.0 0.0 2382.0 0 0 0 0 0 0 0 0 0 g 0 0 4194.0 10531.0 10531.0 0.0 0.0 0.0 0.0 6099.0 0 0 0 0 0 0 0 0 0 t 0 0 2348.0 68.0 143.0 0.0 10531.0 10531.0 0.0 2898.0 0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m26_shift3 ; 35 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m26_shift3 (dyads_m26dyads_m26)
; dyads_m26 (dyads_m26dyads_m26); m=0 (reference); ncol1=10; shift=3; ncol=16; ---scCACACChs--- ; Alignment reference a 0 0 0 107 153 0 672 0 672 0 0 174 138 0 0 0 c 0 0 0 238 261 672 0 672 0 672 672 261 186 0 0 0 g 0 0 0 198 124 0 0 0 0 0 0 43 227 0 0 0 t 0 0 0 129 134 0 0 0 0 0 0 194 121 0 0 0

MA1566.1_rc_shift3 (TBX3_rc)
; dyads_m26 versus MA1566.1_rc (TBX3_rc); m=1/34; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.869181; ---ttsACACcty--- ; cor=; Ncor= a 0 0 0 578.0 484.0 1112.0 2544.0 0.0 2544.0 0.0 302.0 760.0 497.0 0 0 0 c 0 0 0 620.0 947.0 2544.0 155.0 2544.0 0.0 2544.0 2544.0 1207.0 1003.0 0 0 0 g 0 0 0 586.0 410.0 1471.0 634.0 0.0 735.0 45.0 862.0 481.0 399.0 0 0 0 t 0 0 0 760.0 2544.0 170.0 115.0 0.0 16.0 6.0 427.0 2544.0 644.0 0 0 0

MA1567.1_rc_shift3 (TBX6_rc)
; dyads_m26 versus MA1567.1_rc (TBX6_rc); m=2/34; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.834262; ---tTmACACcty--- ; cor=; Ncor= a 0 0 0 2330.0 713.0 5964.0 11087.0 12.0 11087.0 0.0 1058.0 2157.0 2456.0 0 0 0 c 0 0 0 2141.0 2251.0 11087.0 320.0 11087.0 0.0 11087.0 11087.0 3347.0 4003.0 0 0 0 g 0 0 0 2066.0 652.0 4876.0 3053.0 0.0 1002.0 63.0 2913.0 1173.0 1630.0 0 0 0 t 0 0 0 4550.0 11087.0 1430.0 552.0 14.0 44.0 58.0 1882.0 11087.0 2998.0 0 0 0

MA1511.1_shift3 (KLF10)
; dyads_m26 versus MA1511.1 (KLF10); m=3/34; ncol2=11; w=10; offset=0; strand=D; shift=3; score=0.806462; ---gmCACrCCCmy-- ; cor=; Ncor= a 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 c 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 g 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 t 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0

MA0690.1_rc_shift3 (TBX21_rc)
; dyads_m26 versus MA0690.1_rc (TBX21_rc); m=4/34; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.791893; ---TTCACACCTt--- ; cor=; Ncor= a 0 0 0 1287.0 0.0 364.0 4395.0 2.0 4395.0 33.0 398.0 146.0 872.0 0 0 0 c 0 0 0 317.0 38.0 4395.0 34.0 4395.0 16.0 4395.0 4395.0 359.0 937.0 0 0 0 g 0 0 0 441.0 0.0 126.0 331.0 0.0 180.0 17.0 239.0 30.0 263.0 0 0 0 t 0 0 0 4395.0 4395.0 80.0 185.0 1.0 6.0 2.0 612.0 4395.0 2322.0 0 0 0

MA0493.1_shift2 (Klf1)
; dyads_m26 versus MA0493.1 (Klf1); m=5/34; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.776907; --rrCCACACCCw--- ; cor=; Ncor= a 0 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 c 0 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 g 0 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0

MA0689.1_rc_shift2 (TBX20_rc)
; dyads_m26 versus MA0689.1_rc (TBX20_rc); m=6/34; ncol2=11; w=10; offset=-1; strand=R; shift=2; score=0.725561; --yTTCACACCTw--- ; cor=; Ncor= a 0 0 59.0 170.0 10.0 82.0 572.0 4.0 572.0 40.0 26.0 24.0 250.0 0 0 0 c 0 0 300.0 53.0 6.0 572.0 11.0 572.0 10.0 572.0 572.0 54.0 121.0 0 0 0 g 0 0 60.0 16.0 1.0 10.0 1.0 1.0 0.0 0.0 34.0 23.0 4.0 0 0 0 t 0 0 154.0 572.0 572.0 48.0 8.0 0.0 0.0 0.0 50.0 572.0 197.0 0 0 0

MA1517.1_shift2 (KLF6)
; dyads_m26 versus MA1517.1 (KLF6); m=7/34; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.718161; --srcCACRCCCm--- ; cor=; Ncor= a 0 0 443.0 1035.0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 c 0 0 624.0 490.0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 g 0 0 626.0 1157.0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 t 0 0 499.0 136.0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0

MA1512.1_shift3 (KLF11)
; dyads_m26 versus MA1512.1 (KLF11); m=8/34; ncol2=11; w=10; offset=0; strand=D; shift=3; score=0.717199; ---gcCACGCCCmC-- ; cor=; Ncor= a 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 c 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 g 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 t 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0

MA1515.1_shift2 (KLF2)
; dyads_m26 versus MA1515.1 (KLF2); m=9/34; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.714686; --srCCmCrCCCw--- ; cor=; Ncor= a 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0

MA0688.1_rc_shift2 (TBX2_rc)
; dyads_m26 versus MA0688.1_rc (TBX2_rc); m=10/34; ncol2=11; w=10; offset=-1; strand=R; shift=2; score=0.712652; --ttTcACACCTw--- ; cor=; Ncor= a 0 0 667.0 656.0 120.0 1409.0 3181.0 12.0 3181.0 14.0 353.0 442.0 804.0 0 0 0 c 0 0 590.0 527.0 125.0 3181.0 27.0 3181.0 21.0 3181.0 3181.0 716.0 717.0 0 0 0 g 0 0 446.0 491.0 26.0 1289.0 392.0 0.0 329.0 36.0 519.0 59.0 402.0 0 0 0 t 0 0 1477.0 2525.0 3181.0 310.0 307.0 26.0 0.0 9.0 602.0 3181.0 1258.0 0 0 0

MA0599.1_shift3 (KLF5)
; dyads_m26 versus MA0599.1 (KLF5); m=11/34; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.70358; ---gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA0741.1_shift3 (KLF16)
; dyads_m26 versus MA0741.1 (KLF16); m=12/34; ncol2=11; w=10; offset=0; strand=D; shift=3; score=0.692816; ---gmCMCgCCCMC-- ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0

MA0807.1_rc_shift4 (TBX5_rc)
; dyads_m26 versus MA0807.1_rc (TBX5_rc); m=13/34; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.691028; ----TmACACCT---- ; cor=; Ncor= a 0 0 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 c 0 0 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 g 0 0 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 t 0 0 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0

MA0801.1_rc_shift4 (MGA_rc)
; dyads_m26 versus MA0801.1_rc (MGA_rc); m=14/34; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.689546; ----TCACACCT---- ; cor=; Ncor= a 0 0 0 0 274.0 6465.0 30489.0 11.0 30489.0 104.0 1929.0 4160.0 0 0 0 0 c 0 0 0 0 920.0 30489.0 381.0 30489.0 96.0 30489.0 30489.0 8873.0 0 0 0 0 g 0 0 0 0 110.0 1753.0 3089.0 1.0 3534.0 509.0 3737.0 1151.0 0 0 0 0 t 0 0 0 0 30489.0 689.0 1042.0 14.0 12.0 16.0 4310.0 30489.0 0 0 0 0

MA0803.1_rc_shift4 (TBX15_rc)
; dyads_m26 versus MA0803.1_rc (TBX15_rc); m=15/34; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.686823; ----TCACACCT---- ; cor=; Ncor= a 0 0 0 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 0 0 0 c 0 0 0 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 0 0 0 g 0 0 0 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 0 0 0 t 0 0 0 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0 0 0 0

MA0805.1_rc_shift4 (TBX1_rc)
; dyads_m26 versus MA0805.1_rc (TBX1_rc); m=16/34; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.679117; ----TCACACCT---- ; cor=; Ncor= a 0 0 0 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 0 c 0 0 0 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 0 g 0 0 0 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 0 t 0 0 0 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0 0

MA1565.1_rc_shift2 (TBX18_rc)
; dyads_m26 versus MA1565.1_rc (TBX18_rc); m=17/34; ncol2=12; w=10; offset=-1; strand=R; shift=2; score=0.672011; --ytTCACACCTyy-- ; cor=; Ncor= a 0 0 90.0 95.0 34.0 32.0 778.0 2.0 778.0 0.0 47.0 59.0 148.0 160.0 0 0 c 0 0 246.0 265.0 5.0 778.0 109.0 778.0 0.0 778.0 778.0 159.0 435.0 316.0 0 0 g 0 0 137.0 62.0 1.0 161.0 98.0 6.0 80.0 0.0 57.0 62.0 103.0 86.0 0 0 t 0 0 305.0 778.0 778.0 52.0 100.0 21.0 7.0 14.0 73.0 778.0 343.0 216.0 0 0

MA0806.1_rc_shift4 (TBX4_rc)
; dyads_m26 versus MA0806.1_rc (TBX4_rc); m=18/34; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.665595; ----TcACACCT---- ; cor=; Ncor= a 0 0 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 c 0 0 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 g 0 0 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 t 0 0 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0

MA0802.1_rc_shift2 (TBR1_rc)
; dyads_m26 versus MA0802.1_rc (TBR1_rc); m=19/34; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.641773; --tTTCACACCT---- ; cor=; Ncor= a 0 0 5846.0 4576.0 205.0 7001.0 34509.0 4.0 34509.0 213.0 4480.0 1433.0 0 0 0 0 c 0 0 4537.0 1488.0 584.0 34509.0 157.0 34509.0 88.0 34509.0 34509.0 3329.0 0 0 0 0 g 0 0 5619.0 2575.0 90.0 2551.0 4742.0 6.0 1759.0 254.0 3255.0 359.0 0 0 0 0 t 0 0 18507.0 25869.0 34509.0 1175.0 2386.0 0.0 39.0 70.0 6880.0 34509.0 0 0 0 0

MA0039.4_shift2 (KLF4)
; dyads_m26 versus MA0039.4 (KLF4); m=20/34; ncol2=12; w=10; offset=-1; strand=D; shift=2; score=0.618148; --ssCCCCACCChs-- ; cor=; Ncor= a 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0

MA0747.1_shift3 (SP8)
; dyads_m26 versus MA0747.1 (SP8); m=21/34; ncol2=12; w=10; offset=0; strand=D; shift=3; score=0.617648; ---rmCACgCCCmCy- ; cor=; Ncor= a 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 c 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 g 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 t 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0

MA0800.1_rc_shift0 (EOMES_rc)
; dyads_m26 versus MA0800.1_rc (EOMES_rc); m=22/34; ncol2=13; w=10; offset=-3; strand=R; shift=0; score=0.613024; dwttTCACACCTt--- ; cor=; Ncor= a 2800.0 4183.0 3781.0 3351.0 24.0 980.0 9832.0 3.0 9832.0 94.0 1305.0 653.0 2122.0 0 0 0 c 1954.0 1966.0 2941.0 1022.0 99.0 9832.0 98.0 9832.0 50.0 9832.0 9832.0 1259.0 2274.0 0 0 0 g 2577.0 1960.0 4337.0 1956.0 28.0 550.0 1540.0 8.0 600.0 92.0 1004.0 158.0 911.0 0 0 0 t 2501.0 5649.0 9832.0 9832.0 9832.0 210.0 495.0 9.0 19.0 23.0 1775.0 9832.0 4526.0 0 0 0

MA1564.1_shift3 (SP9)
; dyads_m26 versus MA1564.1 (SP9); m=23/34; ncol2=12; w=10; offset=0; strand=D; shift=3; score=0.601142; ---rcCmCGCCCmcy- ; cor=; Ncor= a 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 c 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 g 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 t 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0

MA0746.2_shift2 (SP3)
; dyads_m26 versus MA0746.2 (SP3); m=24/34; ncol2=13; w=10; offset=-1; strand=D; shift=2; score=0.551408; --srCCACGCCCmCy- ; cor=; Ncor= a 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0

MA1621.1_shift3 (Rbpjl)
; dyads_m26 versus MA1621.1 (Rbpjl); m=25/34; ncol2=14; w=10; offset=0; strand=D; shift=3; score=0.544913; ---svmaCACCTGtsy ; cor=; Ncor= a 0 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 c 0 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 g 0 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 t 0 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0

MA1107.2_shift1 (KLF9)
; dyads_m26 versus MA1107.2 (KLF9); m=26/34; ncol2=16; w=10; offset=-2; strand=D; shift=1; score=0.536519; -crgCCACACCCAChy ; cor=; Ncor= a 0 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 c 0 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 g 0 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 t 0 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0

MA1620.1_shift4 (Ptf1a(var.3))
; dyads_m26 versus MA1620.1 (Ptf1a(var.3)); m=27/34; ncol2=12; w=9; offset=1; strand=D; shift=4; score=0.534089; ----rmaCACCTGtky ; cor=; Ncor= a 0 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 c 0 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 g 0 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 t 0 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0

MA0740.1_shift2 (KLF14)
; dyads_m26 versus MA0740.1 (KLF14); m=28/34; ncol2=14; w=10; offset=-1; strand=D; shift=2; score=0.500055; --krcCACGCCCmYyt ; cor=; Ncor= a 0 0 430.0 1205.0 526.0 0.0 1708.0 2.0 69.0 0.0 0.0 0.0 716.0 32.0 280.0 649.0 c 0 0 215.0 73.0 1360.0 1599.0 136.0 1596.0 36.0 1602.0 1604.0 1609.0 961.0 1463.0 594.0 741.0 g 0 0 966.0 2280.0 96.0 10.0 58.0 0.0 2939.0 3.0 3.0 4.0 1.0 15.0 89.0 314.0 t 0 0 693.0 71.0 404.0 248.0 5.0 2.0 31.0 0.0 6.0 65.0 31.0 559.0 1041.0 1670.0

MA0742.1_shift2 (Klf12)
; dyads_m26 versus MA0742.1 (Klf12); m=29/34; ncol2=15; w=10; offset=-1; strand=D; shift=2; score=0.479042; --GrCCACGCCCwtht ; cor=; Ncor= a 0 0 167.0 553.0 19.0 5.0 853.0 9.0 215.0 0.0 0.0 0.0 410.0 238.0 308.0 238.0 c 0 0 35.0 11.0 668.0 670.0 27.0 675.0 1.0 687.0 706.0 715.0 120.0 219.0 239.0 186.0 g 0 0 1158.0 531.0 8.0 12.0 2.0 0.0 1348.0 0.0 9.0 0.0 0.0 99.0 84.0 117.0 t 0 0 225.0 0.0 9.0 3.0 0.0 4.0 16.0 4.0 13.0 13.0 483.0 403.0 290.0 429.0

MA1558.1_rc_shift5 (SNAI1_rc)
; dyads_m26 versus MA1558.1_rc (SNAI1_rc); m=30/34; ncol2=10; w=8; offset=2; strand=R; shift=5; score=0.478194; -----yrCACCTGyh- ; cor=; Ncor= a 0 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 c 0 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 g 0 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 t 0 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0

MA1155.1_shift3 (ZSCAN4)
; dyads_m26 versus MA1155.1 (ZSCAN4); m=31/34; ncol2=15; w=10; offset=0; strand=D; shift=3; score=0.471533; ---tGCACACmCTGaA ; cor=; Ncor= a 0 0 0 257.0 290.0 0.0 1292.0 0.0 1281.0 3.0 772.0 7.0 8.0 3.0 1118.0 1225.0 c 0 0 0 383.0 2.0 1676.0 0.0 1665.0 0.0 1702.0 374.0 1684.0 11.0 50.0 107.0 279.0 g 0 0 0 112.0 1737.0 1.0 0.0 0.0 2.0 0.0 320.0 0.0 75.0 1873.0 230.0 0.0 t 0 0 0 1373.0 0.0 0.0 2.0 0.0 2.0 73.0 8.0 2.0 1699.0 218.0 362.0 6.0

MA0103.3_shift5 (ZEB1)
; dyads_m26 versus MA0103.3 (ZEB1); m=32/34; ncol2=11; w=8; offset=2; strand=D; shift=5; score=0.442718; -----ssCACCTGsss ; cor=; Ncor= a 0 0 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 c 0 0 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 g 0 0 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 t 0 0 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0

MA0522.3_shift5 (TCF3)
; dyads_m26 versus MA0522.3 (TCF3); m=33/34; ncol2=11; w=8; offset=2; strand=D; shift=5; score=0.438108; -----svCACCTGCss ; cor=; Ncor= a 0 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 c 0 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 g 0 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 t 0 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0

MA1648.1_shift5 (TCF12(var.2))
; dyads_m26 versus MA1648.1 (TCF12(var.2)); m=34/34; ncol2=11; w=8; offset=2; strand=D; shift=5; score=0.432873; -----ssCACCTGCys ; cor=; Ncor= a 0 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 c 0 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 g 0 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 t 0 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m1_shift3 ; 40 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m1_shift3 (oligos_7nt_mkv4_m1oligos_7nt_mkv4_m1)
; oligos_7nt_mkv4_m1 (oligos_7nt_mkv4_m1oligos_7nt_mkv4_m1); m=0 (reference); ncol1=14; shift=3; ncol=17; ---rsAACAGSTGCags ; Alignment reference a 0 0 0 120 70 375 423 1 455 2 10 5 0 18 275 94 99 c 0 0 0 85 143 16 3 452 0 2 116 0 0 342 65 86 129 g 0 0 0 193 167 62 31 2 0 449 321 3 456 46 56 207 144 t 0 0 0 59 77 4 0 2 2 4 10 449 1 51 61 70 85

MA0499.2_rc_shift3 (MYOD1_rc)
; oligos_7nt_mkv4_m1 versus MA0499.2_rc (MYOD1_rc); m=1/39; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.865221; ---rkrACAGGTGcwg- ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0

MA0745.2_rc_shift3 (SNAI2_rc)
; oligos_7nt_mkv4_m1 versus MA0745.2_rc (SNAI2_rc); m=2/39; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.843684; ---rykACAGGTGcrt- ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0

MA1621.1_rc_shift3 (Rbpjl_rc)
; oligos_7nt_mkv4_m1 versus MA1621.1_rc (Rbpjl_rc); m=3/39; ncol2=14; w=14; offset=0; strand=R; shift=3; score=0.834015; ---grsaCAGGTGtkbs ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0

MA0830.2_rc_shift3 (TCF4_rc)
; oligos_7nt_mkv4_m1 versus MA0830.2_rc (TCF4_rc); m=4/39; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.760969; ---ssggCAGGTGccg- ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0

MA0832.1_shift3 (Tcf21)
; oligos_7nt_mkv4_m1 versus MA0832.1 (Tcf21); m=5/39; ncol2=14; w=14; offset=0; strand=D; shift=3; score=0.749664; ---ryAACAGCTGTTry ; cor=; Ncor= a 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0

MA1631.1_rc_shift3 (ASCL1(var.2)_rc)
; oligos_7nt_mkv4_m1 versus MA1631.1_rc (ASCL1(var.2)_rc); m=6/39; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.739738; ---gsrGCAGGTGchg- ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; oligos_7nt_mkv4_m1 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=7/39; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.721473; ----rmaCAGGTGtky- ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0

MA0521.1_shift5 (Tcf12)
; oligos_7nt_mkv4_m1 versus MA0521.1 (Tcf12); m=8/39; ncol2=11; w=11; offset=2; strand=D; shift=5; score=0.693037; -----rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA1559.1_shift5 (SNAI3)
; oligos_7nt_mkv4_m1 versus MA1559.1 (SNAI3); m=9/39; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.674862; -----arCAGGTGya-- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0

MA0500.2_rc_shift4 (MYOG_rc)
; oligos_7nt_mkv4_m1 versus MA0500.2_rc (MYOG_rc); m=10/39; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.671144; ----sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA1618.1_shift4 (Ptf1a)
; oligos_7nt_mkv4_m1 versus MA1618.1 (Ptf1a); m=11/39; ncol2=13; w=13; offset=1; strand=D; shift=4; score=0.668774; ----dmaCAGATGttkh ; cor=; Ncor= a 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 c 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 g 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 t 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0

MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)
; oligos_7nt_mkv4_m1 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=12/39; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.659489; ----rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0

MA1641.1_shift4 (MYF5)
; oligos_7nt_mkv4_m1 versus MA1641.1 (MYF5); m=13/39; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.657139; ----gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0

MA0744.2_shift0 (SCRT2)
; oligos_7nt_mkv4_m1 versus MA0744.2 (SCRT2); m=14/39; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.644381; rrwkCAACAGGTggtw- ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0 0

MA0743.2_shift0 (SCRT1)
; oligos_7nt_mkv4_m1 versus MA0743.2 (SCRT1); m=15/39; ncol2=16; w=13; offset=-3; strand=D; shift=0; score= 0.6343; wawkCAACAGGTGgtw- ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0 0

MA1105.2_shift3 (GRHL2)
; oligos_7nt_mkv4_m1 versus MA1105.2 (GRHL2); m=16/39; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.632732; ---arAACAGGTTtk-- ; cor=; Ncor= a 0 0 0 14483.0 17842.0 36467.0 37065.0 503.0 34024.0 2824.0 642.0 1878.0 1752.0 7061.0 8868.0 0 0 c 0 0 0 9741.0 6996.0 1147.0 712.0 40446.0 1543.0 581.0 987.0 2331.0 2000.0 9341.0 8528.0 0 0 g 0 0 0 9161.0 10776.0 2646.0 2841.0 609.0 485.0 37226.0 39624.0 748.0 1220.0 7961.0 10536.0 0 0 t 0 0 0 8493.0 6264.0 1618.0 1260.0 320.0 5826.0 1247.0 625.0 36921.0 36906.0 17515.0 13946.0 0 0

MA0103.3_rc_shift4 (ZEB1_rc)
; oligos_7nt_mkv4_m1 versus MA0103.3_rc (ZEB1_rc); m=17/39; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.618812; ----sssCAGGTGss-- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0 0

MA0820.1_rc_shift5 (FIGLA_rc)
; oligos_7nt_mkv4_m1 versus MA0820.1_rc (FIGLA_rc); m=18/39; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.611907; -----wmCAGGTGkw-- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0

MA1558.1_shift5 (SNAI1)
; oligos_7nt_mkv4_m1 versus MA1558.1 (SNAI1); m=19/39; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.606631; -----drCAGGTGyr-- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0

MA1648.1_rc_shift4 (TCF12(var.2)_rc)
; oligos_7nt_mkv4_m1 versus MA1648.1_rc (TCF12(var.2)_rc); m=20/39; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.586456; ----srGCAGGTGss-- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0

MA0522.3_rc_shift4 (TCF3_rc)
; oligos_7nt_mkv4_m1 versus MA0522.3_rc (TCF3_rc); m=21/39; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.57852; ----ssGCAGGTGbs-- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0

MA0816.1_shift5 (Ascl2)
; oligos_7nt_mkv4_m1 versus MA0816.1 (Ascl2); m=22/39; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.572565; -----arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA1100.2_shift5 (ASCL1)
; oligos_7nt_mkv4_m1 versus MA1100.2 (ASCL1); m=23/39; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.571347; -----rrCAGCTGcy-- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA1472.1_shift5 (BHLHA15(var.2))
; oligos_7nt_mkv4_m1 versus MA1472.1 (BHLHA15(var.2)); m=24/39; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.564597; -----avCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0

MA0665.1_rc_shift5 (MSC_rc)
; oligos_7nt_mkv4_m1 versus MA0665.1_rc (MSC_rc); m=25/39; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.562153; -----AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0

MA1467.1_shift5 (ATOH1(var.2))
; oligos_7nt_mkv4_m1 versus MA1467.1 (ATOH1(var.2)); m=26/39; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.558701; -----AACAGCTGTY-- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0

MA0667.1_rc_shift5 (MYF6_rc)
; oligos_7nt_mkv4_m1 versus MA0667.1_rc (MYF6_rc); m=27/39; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.540786; -----RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0

MA0691.1_shift5 (TFAP4)
; oligos_7nt_mkv4_m1 versus MA0691.1 (TFAP4); m=28/39; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.536482; -----AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA1635.1_shift5 (BHLHE22(var.2))
; oligos_7nt_mkv4_m1 versus MA1635.1 (BHLHE22(var.2)); m=29/39; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.535027; -----csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA1493.1_rc_shift5 (HES6_rc)
; oligos_7nt_mkv4_m1 versus MA1493.1_rc (HES6_rc); m=30/39; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.524741; -----rACACGTGCC-- ; cor=; Ncor= a 0 0 0 0 0 209.0 439.0 0.0 439.0 0.0 16.0 11.0 15.0 13.0 43.0 0 0 c 0 0 0 0 0 0.0 0.0 439.0 29.0 439.0 9.0 9.0 19.0 439.0 439.0 0 0 g 0 0 0 0 0 152.0 21.0 0.0 7.0 12.0 439.0 0.0 439.0 35.0 39.0 0 0 t 0 0 0 0 0 79.0 33.0 0.0 0.0 10.0 2.0 439.0 17.0 16.0 12.0 0 0

MA0048.2_rc_shift5 (NHLH1_rc)
; oligos_7nt_mkv4_m1 versus MA0048.2_rc (NHLH1_rc); m=31/39; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.51867; -----mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA0819.1_shift5 (CLOCK)
; oligos_7nt_mkv4_m1 versus MA0819.1 (CLOCK); m=32/39; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.510875; -----aACACGTGty-- ; cor=; Ncor= a 0 0 0 0 0 226.0 429.0 11.0 429.0 16.0 40.0 3.0 0.0 1.0 89.0 0 0 c 0 0 0 0 0 35.0 85.0 429.0 5.0 429.0 0.0 5.0 3.0 152.0 128.0 0 0 g 0 0 0 0 0 93.0 89.0 2.0 15.0 0.0 429.0 5.0 429.0 110.0 39.0 0 0 t 0 0 0 0 0 75.0 13.0 2.0 0.0 28.0 0.0 429.0 9.0 429.0 174.0 0 0

MA1638.1_shift5 (HAND2)
; oligos_7nt_mkv4_m1 versus MA1638.1 (HAND2); m=33/39; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.502656; -----amCAGATGby-- ; cor=; Ncor= a 0 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 0 c 0 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 0 g 0 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 0 t 0 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0 0

MA0626.1_rc_shift5 (Npas2_rc)
; oligos_7nt_mkv4_m1 versus MA0626.1_rc (Npas2_rc); m=34/39; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.501005; -----kaCACGTGsh-- ; cor=; Ncor= a 0 0 0 0 0 202.0 566.0 0.0 999.0 0.0 0.0 0.0 0.0 48.0 257.0 0 0 c 0 0 0 0 0 202.0 188.0 918.0 0.0 918.0 0.0 0.0 0.0 420.0 293.0 0 0 g 0 0 0 0 0 299.0 172.0 0.0 0.0 0.0 918.0 0.0 999.0 377.0 177.0 0 0 t 0 0 0 0 0 297.0 74.0 81.0 0.0 81.0 81.0 999.0 0.0 154.0 273.0 0 0

MA0100.3_rc_shift5 (MYB_rc)
; oligos_7nt_mkv4_m1 versus MA0100.3_rc (MYB_rc); m=35/39; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.500283; -----kdCAGTTGvk-- ; cor=; Ncor= a 0 0 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 0 c 0 0 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 0 g 0 0 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 0 t 0 0 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0 0

MA0622.1_rc_shift6 (Mlxip_rc)
; oligos_7nt_mkv4_m1 versus MA0622.1_rc (Mlxip_rc); m=36/39; ncol2=8; w=8; offset=3; strand=R; shift=6; score=0.417798; ------mCACGTGv--- ; cor=; Ncor= a 0 0 0 0 0 0 499.0 0.0 999.0 0.0 0.0 0.0 0.0 263.0 0 0 0 c 0 0 0 0 0 0 250.0 999.0 0.0 999.0 0.0 0.0 0.0 421.0 0 0 0 g 0 0 0 0 0 0 63.0 0.0 0.0 0.0 999.0 0.0 999.0 263.0 0 0 0 t 0 0 0 0 0 0 188.0 0.0 0.0 0.0 0.0 999.0 0.0 53.0 0 0 0

MA0807.1_shift8 (TBX5)
; oligos_7nt_mkv4_m1 versus MA0807.1 (TBX5); m=37/39; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.405123; --------AGGTGTkA- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0 0

MA0806.1_shift8 (TBX4)
; oligos_7nt_mkv4_m1 versus MA0806.1 (TBX4); m=38/39; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.402446; --------AGGTGTgA- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0 0

MA1647.1_rc_shift1 (PRDM4_rc)
; oligos_7nt_mkv4_m1 versus MA1647.1_rc (PRDM4_rc); m=39/39; ncol2=11; w=9; offset=-2; strand=R; shift=1; score=0.400372; -twGAAACAGhy----- ; cor=; Ncor= a 0 1799.0 2962.0 292.0 6811.0 6288.0 6889.0 39.0 5543.0 154.0 2123.0 1559.0 0 0 0 0 0 c 0 1344.0 726.0 129.0 111.0 393.0 82.0 6813.0 566.0 316.0 2079.0 2553.0 0 0 0 0 0 g 0 1532.0 1456.0 6353.0 138.0 405.0 137.0 110.0 286.0 6504.0 1012.0 1163.0 0 0 0 0 0 t 0 2580.0 2111.0 481.0 195.0 169.0 147.0 293.0 860.0 281.0 2041.0 1980.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m48_shift0 ; 45 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m48_shift0 (oligos_7nt_mkv4_m48oligos_7nt_mkv4_m48)
; oligos_7nt_mkv4_m48 (oligos_7nt_mkv4_m48oligos_7nt_mkv4_m48); m=0 (reference); ncol1=14; shift=0; ncol=17; ssaGCASCTGTTsy--- ; Alignment reference a 99 74 244 54 1 426 12 2 2 0 0 2 58 60 0 0 0 c 122 155 60 46 429 2 295 423 0 0 31 45 160 183 0 0 0 g 132 120 67 311 0 0 116 3 0 430 3 14 131 79 0 0 0 t 77 81 59 19 0 2 7 2 428 0 396 369 81 108 0 0 0

MA0499.2_shift1 (MYOD1)
; oligos_7nt_mkv4_m48 versus MA0499.2 (MYOD1); m=1/44; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.862705; -cwgCACCTGTymy--- ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0

MA1621.1_shift0 (Rbpjl)
; oligos_7nt_mkv4_m48 versus MA1621.1 (Rbpjl); m=2/44; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.856216; svmaCACCTGtsyc--- ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0

MA0745.2_shift1 (SNAI2)
; oligos_7nt_mkv4_m48 versus MA0745.2 (SNAI2); m=3/44; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.82706; -aygCACCTGTmry--- ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0 0

MA0832.1_rc_shift0 (Tcf21_rc)
; oligos_7nt_mkv4_m48 versus MA0832.1_rc (Tcf21_rc); m=4/44; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.816227; ryAACAGCTGTTry--- ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0

MA0830.2_shift1 (TCF4)
; oligos_7nt_mkv4_m48 versus MA0830.2 (TCF4); m=5/44; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.758396; -cggCACCTGccss--- ; cor=; Ncor= a 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 0 c 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 0 g 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 0 t 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0 0

MA1631.1_shift1 (ASCL1(var.2))
; oligos_7nt_mkv4_m48 versus MA1631.1 (ASCL1(var.2)); m=6/44; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.738555; -cdgCACCTGCysc--- ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0

MA1620.1_shift1 (Ptf1a(var.3))
; oligos_7nt_mkv4_m48 versus MA1620.1 (Ptf1a(var.3)); m=7/44; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.734234; -rmaCACCTGtky---- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0 0

MA1485.1_shift0 (FERD3L)
; oligos_7nt_mkv4_m48 versus MA1485.1 (FERD3L); m=8/44; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.726167; GyrmCAGCTGTyAC--- ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0 0

MA1618.1_rc_shift0 (Ptf1a_rc)
; oligos_7nt_mkv4_m48 versus MA1618.1_rc (Ptf1a_rc); m=9/44; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.713741; dmaaCATCTGtkh---- ; cor=; Ncor= a 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 0 c 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 0 g 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 0 t 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; oligos_7nt_mkv4_m48 versus MA0521.1_rc (Tcf12_rc); m=10/44; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.694787; -cwsCAGCTGYy----- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0

MA0500.2_shift1 (MYOG)
; oligos_7nt_mkv4_m48 versus MA0500.2 (MYOG); m=11/44; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.690155; -sarCAGCTGyts---- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0

MA1641.1_rc_shift1 (MYF5_rc)
; oligos_7nt_mkv4_m48 versus MA1641.1_rc (MYF5_rc); m=12/44; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.679375; -gvaCAGCTGtbc---- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0 0

MA1619.1_shift1 (Ptf1a(var.2))
; oligos_7nt_mkv4_m48 versus MA1619.1 (Ptf1a(var.2)); m=13/44; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.676552; -rmaCAGCTGtky---- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0

MA1642.1_rc_shift1 (NEUROG2(var.2)_rc)
; oligos_7nt_mkv4_m48 versus MA1642.1_rc (NEUROG2(var.2)_rc); m=14/44; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.654493; -brCCATCTGtyyy--- ; cor=; Ncor= a 0 7184.0 9704.0 4904.0 484.0 32515.0 275.0 2806.0 159.0 237.0 1750.0 4721.0 8378.0 7535.0 0 0 0 c 0 8709.0 7581.0 24998.0 33422.0 323.0 418.0 30392.0 301.0 317.0 8039.0 11114.0 10123.0 10813.0 0 0 0 g 0 9034.0 10441.0 2966.0 205.0 904.0 952.0 793.0 211.0 33559.0 8154.0 6467.0 6843.0 7353.0 0 0 0 t 0 9464.0 6665.0 1523.0 280.0 649.0 32746.0 400.0 33720.0 278.0 16448.0 12089.0 9047.0 8690.0 0 0 0

MA1109.1_rc_shift0 (NEUROD1_rc)
; oligos_7nt_mkv4_m48 versus MA1109.1_rc (NEUROD1_rc); m=15/44; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.65396; syrCCATCTGtyc---- ; cor=; Ncor= a 525.0 451.0 580.0 168.0 31.0 2157.0 21.0 90.0 18.0 12.0 47.0 298.0 566.0 0 0 0 0 c 628.0 599.0 418.0 1962.0 2231.0 19.0 77.0 2152.0 16.0 13.0 494.0 906.0 726.0 0 0 0 0 g 591.0 540.0 911.0 93.0 7.0 51.0 150.0 24.0 7.0 2240.0 452.0 323.0 429.0 0 0 0 0 t 538.0 692.0 373.0 59.0 13.0 55.0 2034.0 16.0 2241.0 17.0 1289.0 755.0 561.0 0 0 0 0

MA0091.1_shift0 (TAL1::TCF3)
; oligos_7nt_mkv4_m48 versus MA0091.1 (TAL1::TCF3); m=16/44; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.652367; mgAmCAKMTGkT----- ; cor=; Ncor= a 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 0 c 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 0 g 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 0 t 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0 0

MA0744.2_rc_shift1 (SCRT2_rc)
; oligos_7nt_mkv4_m48 versus MA0744.2_rc (SCRT2_rc); m=17/44; ncol2=16; w=13; offset=1; strand=R; shift=1; score=0.652338; -waccACCTGTTGmwyy ; cor=; Ncor= a 0 21453.0 18751.0 15588.0 11335.0 58889.0 2140.0 1471.0 1184.0 204.0 953.0 4384.0 3732.0 17252.0 16873.0 12071.0 15730.0 c 0 12430.0 14716.0 25288.0 38133.0 1168.0 60636.0 56105.0 252.0 319.0 1878.0 2265.0 1339.0 35769.0 12473.0 17497.0 17680.0 g 0 13846.0 16085.0 11351.0 5661.0 3475.0 972.0 728.0 294.0 64856.0 413.0 5536.0 59161.0 7236.0 6319.0 12732.0 13345.0 t 0 17881.0 16058.0 13383.0 10481.0 2078.0 1862.0 7306.0 63880.0 231.0 62366.0 53425.0 1378.0 5353.0 29945.0 23310.0 18855.0

MA1105.2_rc_shift2 (GRHL2_rc)
; oligos_7nt_mkv4_m48 versus MA1105.2_rc (GRHL2_rc); m=18/44; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.648132; --maAACCTGTTyt--- ; cor=; Ncor= a 0 0 13946.0 17515.0 36906.0 36921.0 625.0 1247.0 5826.0 320.0 1260.0 1618.0 6264.0 8493.0 0 0 0 c 0 0 10536.0 7961.0 1220.0 748.0 39624.0 37226.0 485.0 609.0 2841.0 2646.0 10776.0 9161.0 0 0 0 g 0 0 8528.0 9341.0 2000.0 2331.0 987.0 581.0 1543.0 40446.0 712.0 1147.0 6996.0 9741.0 0 0 0 t 0 0 8868.0 7061.0 1752.0 1878.0 642.0 2824.0 34024.0 503.0 37065.0 36467.0 17842.0 14483.0 0 0 0

MA0743.2_rc_shift1 (SCRT1_rc)
; oligos_7nt_mkv4_m48 versus MA0743.2_rc (SCRT1_rc); m=19/44; ncol2=16; w=13; offset=1; strand=R; shift=1; score=0.645134; -wacCACCTGTTGmwtw ; cor=; Ncor= a 0 19839.0 18454.0 13726.0 7910.0 57969.0 1579.0 1305.0 1058.0 215.0 1002.0 4017.0 2621.0 31975.0 24326.0 12449.0 15464.0 c 0 11049.0 13470.0 26973.0 41190.0 259.0 56500.0 51330.0 159.0 224.0 1566.0 1835.0 1297.0 16396.0 10154.0 14514.0 14307.0 g 0 12837.0 14903.0 8788.0 3296.0 1098.0 466.0 557.0 234.0 59557.0 370.0 8751.0 54835.0 7425.0 8693.0 10314.0 14118.0 t 0 16484.0 13382.0 10722.0 7813.0 883.0 1664.0 7017.0 58758.0 213.0 57271.0 45606.0 1456.0 4413.0 17036.0 22932.0 16320.0

MA1559.1_rc_shift2 (SNAI3_rc)
; oligos_7nt_mkv4_m48 versus MA1559.1_rc (SNAI3_rc); m=20/44; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.640243; --trCACCTGyt----- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0 0

MA0820.1_shift2 (FIGLA)
; oligos_7nt_mkv4_m48 versus MA0820.1 (FIGLA); m=21/44; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.630895; --wmCACCTGkw----- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0

MA0103.3_shift2 (ZEB1)
; oligos_7nt_mkv4_m48 versus MA0103.3 (ZEB1); m=22/44; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.617222; --ssCACCTGsss---- ; cor=; Ncor= a 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 0 c 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 0 g 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 0 t 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0 0

MA0665.1_shift2 (MSC)
; oligos_7nt_mkv4_m48 versus MA0665.1 (MSC); m=23/44; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.606969; --AACAGCTGTT----- ; cor=; Ncor= a 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 0 c 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 0 g 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 0 t 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0 0

MA0816.1_rc_shift2 (Ascl2_rc)
; oligos_7nt_mkv4_m48 versus MA0816.1_rc (Ascl2_rc); m=24/44; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.605607; --rrCAGCTGyt----- ; cor=; Ncor= a 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 0 c 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 0 g 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 0 t 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0 0

MA1558.1_rc_shift2 (SNAI1_rc)
; oligos_7nt_mkv4_m48 versus MA1558.1_rc (SNAI1_rc); m=25/44; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.597744; --yrCACCTGyh----- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0 0

MA0667.1_shift2 (MYF6)
; oligos_7nt_mkv4_m48 versus MA0667.1 (MYF6); m=26/44; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.593893; --AACArCTGTY----- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0 0

MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)
; oligos_7nt_mkv4_m48 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=27/44; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.587883; --rrCAGCTGbt----- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0

MA1648.1_shift2 (TCF12(var.2))
; oligos_7nt_mkv4_m48 versus MA1648.1 (TCF12(var.2)); m=28/44; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.58777; --ssCACCTGCys---- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0 0

MA1467.1_rc_shift2 (ATOH1(var.2)_rc)
; oligos_7nt_mkv4_m48 versus MA1467.1_rc (ATOH1(var.2)_rc); m=29/44; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.58454; --RACAGCTGTT----- ; cor=; Ncor= a 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 c 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 g 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 t 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0

MA0691.1_rc_shift2 (TFAP4_rc)
; oligos_7nt_mkv4_m48 versus MA0691.1_rc (TFAP4_rc); m=30/44; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.58186; --AwCAGCTGwT----- ; cor=; Ncor= a 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 0 c 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 0 g 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 0 t 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0 0

MA1100.2_rc_shift2 (ASCL1_rc)
; oligos_7nt_mkv4_m48 versus MA1100.2_rc (ASCL1_rc); m=31/44; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.579419; --rgCAGCTGyy----- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0

MA0522.3_shift2 (TCF3)
; oligos_7nt_mkv4_m48 versus MA0522.3 (TCF3); m=32/44; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.579392; --svCACCTGCss---- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0 0

MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; oligos_7nt_mkv4_m48 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=33/44; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.537357; --csCAGCTGsg----- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0

MA0048.2_shift2 (NHLH1)
; oligos_7nt_mkv4_m48 versus MA0048.2 (NHLH1); m=34/44; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.535176; --cGCAGCTGCk----- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0

MA0819.1_rc_shift2 (CLOCK_rc)
; oligos_7nt_mkv4_m48 versus MA0819.1_rc (CLOCK_rc); m=35/44; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.525149; --raCACGTGTt----- ; cor=; Ncor= a 0 0 174.0 429.0 9.0 429.0 0.0 28.0 0.0 2.0 13.0 75.0 0 0 0 0 0 c 0 0 39.0 110.0 429.0 5.0 429.0 0.0 15.0 2.0 89.0 93.0 0 0 0 0 0 g 0 0 128.0 152.0 3.0 5.0 0.0 429.0 5.0 429.0 85.0 35.0 0 0 0 0 0 t 0 0 89.0 1.0 0.0 3.0 40.0 16.0 429.0 11.0 429.0 226.0 0 0 0 0 0

MA1570.1_rc_shift2 (TFAP4(var.2)_rc)
; oligos_7nt_mkv4_m48 versus MA1570.1_rc (TFAP4(var.2)_rc); m=36/44; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.525028; --amCAyrTGdt----- ; cor=; Ncor= a 0 0 479.0 206.0 0.0 479.0 0.0 479.0 0.0 0.0 129.0 39.0 0 0 0 0 0 c 0 0 110.0 156.0 479.0 0.0 287.0 161.0 14.0 0.0 0.0 197.0 0 0 0 0 0 g 0 0 210.0 14.0 3.0 0.0 149.0 220.0 0.0 479.0 144.0 130.0 0 0 0 0 0 t 0 0 60.0 103.0 0.0 0.0 479.0 0.0 479.0 0.0 217.0 479.0 0 0 0 0 0

MA1493.1_shift2 (HES6)
; oligos_7nt_mkv4_m48 versus MA1493.1 (HES6); m=37/44; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.520598; --GGCACGTGTy----- ; cor=; Ncor= a 0 0 12.0 16.0 17.0 439.0 2.0 10.0 0.0 0.0 33.0 79.0 0 0 0 0 0 c 0 0 39.0 35.0 439.0 0.0 439.0 12.0 7.0 0.0 21.0 152.0 0 0 0 0 0 g 0 0 439.0 439.0 19.0 9.0 9.0 439.0 29.0 439.0 0.0 0.0 0 0 0 0 0 t 0 0 43.0 13.0 15.0 11.0 16.0 0.0 439.0 0.0 439.0 209.0 0 0 0 0 0

MA1638.1_rc_shift2 (HAND2_rc)
; oligos_7nt_mkv4_m48 versus MA1638.1_rc (HAND2_rc); m=38/44; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.508377; --rvCATCTGkt----- ; cor=; Ncor= a 0 0 7783.0 8498.0 49.0 27962.0 23.0 85.0 4.0 70.0 3155.0 7120.0 0 0 0 0 0 c 0 0 6108.0 8878.0 29851.0 31.0 38.0 30144.0 647.0 132.0 6994.0 7463.0 0 0 0 0 0 g 0 0 10227.0 7690.0 149.0 2276.0 30.0 42.0 410.0 30062.0 11298.0 5564.0 0 0 0 0 0 t 0 0 6165.0 5217.0 234.0 14.0 30192.0 12.0 29222.0 19.0 8836.0 10136.0 0 0 0 0 0

MA0100.3_shift2 (MYB)
; oligos_7nt_mkv4_m48 versus MA0100.3 (MYB); m=39/44; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.504757; --mbCAACTGhm----- ; cor=; Ncor= a 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 0 0 0 c 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 0 0 0 g 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 0 0 0 t 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0 0 0 0

MA0626.1_shift2 (Npas2)
; oligos_7nt_mkv4_m48 versus MA0626.1 (Npas2); m=40/44; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.500563; --dsCACGTGtm----- ; cor=; Ncor= a 0 0 273.0 154.0 0.0 999.0 81.0 81.0 0.0 81.0 74.0 297.0 0 0 0 0 0 c 0 0 177.0 377.0 999.0 0.0 918.0 0.0 0.0 0.0 172.0 299.0 0 0 0 0 0 g 0 0 293.0 420.0 0.0 0.0 0.0 918.0 0.0 918.0 188.0 202.0 0 0 0 0 0 t 0 0 257.0 48.0 0.0 0.0 0.0 0.0 999.0 0.0 566.0 202.0 0 0 0 0 0

MA0807.1_rc_shift1 (TBX5_rc)
; oligos_7nt_mkv4_m48 versus MA0807.1_rc (TBX5_rc); m=41/44; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.424713; -TmACACCT-------- ; cor=; Ncor= a 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 0 0 c 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 0 0 g 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 0 0 t 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0 0 0

MA0806.1_rc_shift1 (TBX4_rc)
; oligos_7nt_mkv4_m48 versus MA0806.1_rc (TBX4_rc); m=42/44; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.419967; -TcACACCT-------- ; cor=; Ncor= a 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 0 0 0 0 c 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 0 0 0 0 g 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 0 0 0 0 t 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0 0 0 0 0

MA0622.1_shift3 (Mlxip)
; oligos_7nt_mkv4_m48 versus MA0622.1 (Mlxip); m=43/44; ncol2=8; w=8; offset=3; strand=D; shift=3; score=0.417968; ---bCACGTGk------ ; cor=; Ncor= a 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 0 0 0 0 0 0 c 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 0 0 0 0 0 0 g 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 0 0 0 0 0 0 t 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0 0 0 0 0 0 0

MA1647.1_shift5 (PRDM4)
; oligos_7nt_mkv4_m48 versus MA1647.1 (PRDM4); m=44/44; ncol2=11; w=9; offset=5; strand=D; shift=5; score=0.407241; -----rdCTGTTTCwa- ; cor=; Ncor= a 0 0 0 0 0 1980.0 2041.0 281.0 860.0 293.0 147.0 169.0 195.0 481.0 2111.0 2580.0 0 c 0 0 0 0 0 1163.0 1012.0 6504.0 286.0 110.0 137.0 405.0 138.0 6353.0 1456.0 1532.0 0 g 0 0 0 0 0 2553.0 2079.0 316.0 566.0 6813.0 82.0 393.0 111.0 129.0 726.0 1344.0 0 t 0 0 0 0 0 1559.0 2123.0 154.0 5543.0 39.0 6889.0 6288.0 6811.0 292.0 2962.0 1799.0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m39_shift3 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m39_shift3 (oligos_8nt_mkv5_m39oligos_8nt_mkv5_m39)
; oligos_8nt_mkv5_m39 (oligos_8nt_mkv5_m39oligos_8nt_mkv5_m39); m=0 (reference); ncol1=12; shift=3; ncol=18; ---syCTCCACCCss--- ; Alignment reference a 0 0 0 46 23 3 3 1 1 180 1 3 2 38 35 0 0 0 c 0 0 0 63 70 184 14 197 195 2 196 186 191 62 64 0 0 0 g 0 0 0 53 49 8 13 2 3 16 0 5 5 65 66 0 0 0 t 0 0 0 38 58 5 170 0 1 2 3 6 2 35 35 0 0 0

MA0039.4_shift3 (KLF4)
; oligos_8nt_mkv5_m39 versus MA0039.4 (KLF4); m=1/7; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.85778; ---ssCCCCACCChs--- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0 0

MA0528.2_rc_shift4 (ZNF263_rc)
; oligos_8nt_mkv5_m39 versus MA0528.2_rc (ZNF263_rc); m=2/7; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.660013; ----csTCCTCCCcsc-- ; cor=; Ncor= a 0 0 0 0 11103.0 6566.0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 8247.0 12535.0 9733.0 0 0 c 0 0 0 0 25115.0 24825.0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 28912.0 17883.0 20283.0 0 0 g 0 0 0 0 11689.0 15413.0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 6183.0 14909.0 13040.0 0 0 t 0 0 0 0 8436.0 9539.0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 13001.0 11016.0 13287.0 0 0

MA0599.1_shift4 (KLF5)
; oligos_8nt_mkv5_m39 versus MA0599.1 (KLF5); m=3/7; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.65579; ----gCCMCrCCCh---- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0

MA1600.1_shift0 (ZNF684)
; oligos_8nt_mkv5_m39 versus MA1600.1 (ZNF684); m=4/7; ncol2=18; w=12; offset=-3; strand=D; shift=0; score=0.469082; ryACAGTCCACCCCTTkr ; cor=; Ncor= a 524.0 82.0 1238.0 9.0 1184.0 60.0 9.0 13.0 40.0 1012.0 3.0 44.0 7.0 0.0 249.0 56.0 216.0 606.0 c 168.0 403.0 24.0 1253.0 11.0 216.0 14.0 1236.0 1221.0 9.0 1226.0 1253.0 1229.0 1263.0 129.0 59.0 168.0 201.0 g 362.0 314.0 68.0 9.0 110.0 1135.0 59.0 25.0 2.0 57.0 63.0 10.0 7.0 0.0 18.0 14.0 514.0 326.0 t 206.0 721.0 19.0 19.0 131.0 74.0 1259.0 10.0 67.0 220.0 61.0 6.0 92.0 3.0 1107.0 1224.0 619.0 127.0

MA0130.1_shift5 (ZNF354C)
; oligos_8nt_mkv5_m39 versus MA0130.1 (ZNF354C); m=5/7; ncol2=6; w=6; offset=2; strand=D; shift=5; score= 0.4597; -----mTCCAC------- ; cor=; Ncor= a 0 0 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 c 0 0 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 g 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 t 0 0 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0

MA1578.1_shift7 (VEZF1)
; oligos_8nt_mkv5_m39 versus MA1578.1 (VEZF1); m=6/7; ncol2=10; w=8; offset=4; strand=D; shift=7; score=0.427213; -------CCCCCCmytw- ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0

MA1653.1_shift0 (ZNF148)
; oligos_8nt_mkv5_m39 versus MA1653.1 (ZNF148); m=7/7; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.420962; ysCCCCTCCCcc------ ; cor=; Ncor= a 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 0 0 0 0 c 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 0 0 0 0 g 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 0 0 0 0 t 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m21_shift3 ; 42 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m21_shift3 (local_words_8nt_m21local_words_8nt_m21)
; local_words_8nt_m21 (local_words_8nt_m21local_words_8nt_m21); m=0 (reference); ncol1=12; shift=3; ncol=16; ---rsAGCAGGTGbc- ; Alignment reference a 0 0 0 116 57 361 14 1 359 0 2 0 0 43 85 0 c 0 0 0 55 127 3 0 359 3 10 0 5 2 130 105 0 g 0 0 0 149 129 2 349 4 4 356 363 0 363 100 88 0 t 0 0 0 46 53 0 3 2 0 0 1 361 1 93 88 0

MA1648.1_rc_shift4 (TCF12(var.2)_rc)
; local_words_8nt_m21 versus MA1648.1_rc (TCF12(var.2)_rc); m=1/41; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.856141; ----srGCAGGTGss- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0

MA0522.3_rc_shift4 (TCF3_rc)
; local_words_8nt_m21 versus MA0522.3_rc (TCF3_rc); m=2/41; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.850991; ----ssGCAGGTGbs- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0

MA1631.1_rc_shift3 (ASCL1(var.2)_rc)
; local_words_8nt_m21 versus MA1631.1_rc (ASCL1(var.2)_rc); m=3/41; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.844702; ---gsrGCAGGTGchg ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0

MA0830.2_rc_shift3 (TCF4_rc)
; local_words_8nt_m21 versus MA0830.2_rc (TCF4_rc); m=4/41; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.826717; ---ssggCAGGTGccg ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0

MA0103.3_rc_shift4 (ZEB1_rc)
; local_words_8nt_m21 versus MA0103.3_rc (ZEB1_rc); m=5/41; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.805752; ----sssCAGGTGss- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0

MA1558.1_shift5 (SNAI1)
; local_words_8nt_m21 versus MA1558.1 (SNAI1); m=6/41; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.755008; -----drCAGGTGyr- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0

MA1559.1_shift5 (SNAI3)
; local_words_8nt_m21 versus MA1559.1 (SNAI3); m=7/41; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.732738; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0

MA0745.2_rc_shift3 (SNAI2_rc)
; local_words_8nt_m21 versus MA0745.2_rc (SNAI2_rc); m=8/41; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.727889; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0

MA0499.2_rc_shift3 (MYOD1_rc)
; local_words_8nt_m21 versus MA0499.2_rc (MYOD1_rc); m=9/41; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.697586; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0

MA0820.1_rc_shift5 (FIGLA_rc)
; local_words_8nt_m21 versus MA0820.1_rc (FIGLA_rc); m=10/41; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.693898; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0

MA1621.1_rc_shift3 (Rbpjl_rc)
; local_words_8nt_m21 versus MA1621.1_rc (Rbpjl_rc); m=11/41; ncol2=14; w=12; offset=0; strand=R; shift=3; score=0.690566; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; local_words_8nt_m21 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=12/41; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.678581; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0

MA1100.2_shift5 (ASCL1)
; local_words_8nt_m21 versus MA1100.2 (ASCL1); m=13/41; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.656947; -----rrCAGCTGcy- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0

MA0059.1_shift4 (MAX::MYC)
; local_words_8nt_m21 versus MA0059.1 (MAX::MYC); m=14/41; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.652212; ----rAsCACGTGGt- ; cor=; Ncor= a 0 0 0 0 7.0 15.0 2.0 1.0 21.0 0.0 1.0 0.0 0.0 1.0 3.0 0 c 0 0 0 0 1.0 1.0 9.0 20.0 0.0 20.0 0.0 1.0 0.0 1.0 5.0 0 g 0 0 0 0 9.0 4.0 9.0 0.0 0.0 0.0 20.0 0.0 21.0 18.0 0.0 0 t 0 0 0 0 4.0 1.0 1.0 0.0 0.0 1.0 0.0 20.0 0.0 1.0 13.0 0

MA0816.1_rc_shift5 (Ascl2_rc)
; local_words_8nt_m21 versus MA0816.1_rc (Ascl2_rc); m=15/41; ncol2=10; w=10; offset=2; strand=R; shift=5; score= 0.6483; -----rrCAGCTGyt- ; cor=; Ncor= a 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 c 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 g 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 t 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0

MA1628.1_shift2 (Zic1::Zic2)
; local_words_8nt_m21 versus MA1628.1 (Zic1::Zic2); m=16/41; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.630753; --cvCAGCAGGsr--- ; cor=; Ncor= a 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 0 0 c 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 0 0 g 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 0 0 t 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0 0 0

MA0048.2_rc_shift5 (NHLH1_rc)
; local_words_8nt_m21 versus MA0048.2_rc (NHLH1_rc); m=17/41; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.625518; -----mGCAGCTGCg- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0

MA0500.2_rc_shift4 (MYOG_rc)
; local_words_8nt_m21 versus MA0500.2_rc (MYOG_rc); m=18/41; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.616146; ----sarCAGCTGyts ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0

MA0147.3_rc_shift4 (MYC_rc)
; local_words_8nt_m21 versus MA0147.3_rc (MYC_rc); m=19/41; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.60726; ----srgCACGTGGss ; cor=; Ncor= a 0 0 0 0 1054.0 1421.0 524.0 46.0 4658.0 38.0 293.0 113.0 27.0 286.0 879.0 910.0 c 0 0 0 0 1348.0 1036.0 1198.0 4817.0 63.0 4578.0 70.0 170.0 31.0 472.0 1757.0 1649.0 g 0 0 0 0 1785.0 1524.0 2801.0 56.0 162.0 157.0 4525.0 59.0 4840.0 3746.0 1287.0 1345.0 t 0 0 0 0 755.0 961.0 419.0 23.0 59.0 169.0 54.0 4600.0 44.0 438.0 1019.0 1038.0

MA1472.1_shift5 (BHLHA15(var.2))
; local_words_8nt_m21 versus MA1472.1 (BHLHA15(var.2)); m=20/41; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.600466; -----avCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0

MA0058.3_rc_shift5 (MAX_rc)
; local_words_8nt_m21 versus MA0058.3_rc (MAX_rc); m=21/41; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.598749; -----rgCACGTGkt- ; cor=; Ncor= a 0 0 0 0 0 2543.0 1446.0 36.0 6876.0 19.0 229.0 38.0 0.0 637.0 719.0 0 c 0 0 0 0 0 986.0 1638.0 6876.0 20.0 6876.0 7.0 87.0 0.0 1514.0 1295.0 0 g 0 0 0 0 0 2225.0 2450.0 27.0 159.0 39.0 6876.0 0.0 6876.0 2809.0 1556.0 0 t 0 0 0 0 0 1122.0 1341.0 0.0 69.0 329.0 0.0 6876.0 39.0 1915.0 3307.0 0

MA0825.1_rc_shift5 (MNT_rc)
; local_words_8nt_m21 versus MA0825.1_rc (MNT_rc); m=22/41; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.596798; -----rgCACGTGbt- ; cor=; Ncor= a 0 0 0 0 0 219.0 120.0 25.0 681.0 0.0 16.0 21.0 5.0 63.0 129.0 0 c 0 0 0 0 0 75.0 131.0 681.0 15.0 681.0 7.0 0.0 0.0 203.0 145.0 0 g 0 0 0 0 0 229.0 281.0 0.0 0.0 0.0 681.0 0.0 681.0 228.0 128.0 0 t 0 0 0 0 0 159.0 150.0 0.0 0.0 15.0 0.0 681.0 27.0 187.0 279.0 0

MA1585.1_shift3 (ZKSCAN1)
; local_words_8nt_m21 versus MA1585.1 (ZKSCAN1); m=23/41; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.595599; ---AyAGTAGGtg--- ; cor=; Ncor= a 0 0 0 4633.0 187.0 6054.0 18.0 0.0 6079.0 12.0 13.0 605.0 1273.0 0 0 0 c 0 0 0 456.0 2268.0 53.0 5.0 0.0 48.0 101.0 12.0 1303.0 1480.0 0 0 0 g 0 0 0 584.0 364.0 20.0 6092.0 0.0 0.0 5980.0 6075.0 750.0 2880.0 0 0 0 t 0 0 0 454.0 3308.0 0.0 12.0 6127.0 0.0 34.0 27.0 3469.0 494.0 0 0 0

MA1560.1_rc_shift5 (SOHLH2_rc)
; local_words_8nt_m21 versus MA1560.1_rc (SOHLH2_rc); m=24/41; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.59075; -----ygCACGTGcr- ; cor=; Ncor= a 0 0 0 0 0 224.0 153.0 4.0 1212.0 15.0 7.0 0.0 70.0 276.0 313.0 0 c 0 0 0 0 0 369.0 172.0 1212.0 0.0 1212.0 11.0 41.0 29.0 1212.0 184.0 0 g 0 0 0 0 0 239.0 1212.0 4.0 65.0 0.0 1212.0 0.0 1212.0 264.0 485.0 0 t 0 0 0 0 0 381.0 272.0 41.0 36.0 14.0 0.0 1212.0 45.0 172.0 230.0 0

MA1629.1_shift0 (Zic2)
; local_words_8nt_m21 versus MA1629.1 (Zic2); m=25/41; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.588873; mkCaCAGCAGGrrg-- ; cor=; Ncor= a 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0 0 0 c 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0 0 0 g 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0 0 0 t 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0 0 0

MA0626.1_shift5 (Npas2)
; local_words_8nt_m21 versus MA0626.1 (Npas2); m=26/41; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.586145; -----dsCACGTGtm- ; cor=; Ncor= a 0 0 0 0 0 273.0 154.0 0.0 999.0 81.0 81.0 0.0 81.0 74.0 297.0 0 c 0 0 0 0 0 177.0 377.0 999.0 0.0 918.0 0.0 0.0 0.0 172.0 299.0 0 g 0 0 0 0 0 293.0 420.0 0.0 0.0 0.0 918.0 0.0 918.0 188.0 202.0 0 t 0 0 0 0 0 257.0 48.0 0.0 0.0 0.0 0.0 999.0 0.0 566.0 202.0 0

MA0744.2_shift0 (SCRT2)
; local_words_8nt_m21 versus MA0744.2 (SCRT2); m=27/41; ncol2=16; w=12; offset=-3; strand=D; shift=0; score=0.572099; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0

MA0521.1_shift5 (Tcf12)
; local_words_8nt_m21 versus MA0521.1 (Tcf12); m=28/41; ncol2=11; w=10; offset=2; strand=D; shift=5; score=0.57199; -----rRCAGCTGswg ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0

MA0743.2_shift0 (SCRT1)
; local_words_8nt_m21 versus MA0743.2 (SCRT1); m=29/41; ncol2=16; w=12; offset=-3; strand=D; shift=0; score=0.56685; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0

MA0622.1_shift6 (Mlxip)
; local_words_8nt_m21 versus MA0622.1 (Mlxip); m=30/41; ncol2=8; w=8; offset=3; strand=D; shift=6; score= 0.4972; ------bCACGTGk-- ; cor=; Ncor= a 0 0 0 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 0 0 c 0 0 0 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 0 0 g 0 0 0 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 0 0 t 0 0 0 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0 0 0

MA0807.1_shift8 (TBX5)
; local_words_8nt_m21 versus MA0807.1 (TBX5); m=31/41; ncol2=8; w=7; offset=5; strand=D; shift=8; score=0.485837; --------AGGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0

MA0806.1_shift8 (TBX4)
; local_words_8nt_m21 versus MA0806.1 (TBX4); m=32/41; ncol2=8; w=7; offset=5; strand=D; shift=8; score=0.485369; --------AGGTGTgA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0

MA0803.1_shift8 (TBX15)
; local_words_8nt_m21 versus MA0803.1 (TBX15); m=33/41; ncol2=8; w=7; offset=5; strand=D; shift=8; score=0.463817; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10502.0 458.0 19.0 61.0 0.0 140.0 44.0 10502.0 c 0 0 0 0 0 0 0 0 74.0 101.0 7.0 175.0 8.0 435.0 454.0 71.0 g 0 0 0 0 0 0 0 0 664.0 10502.0 10502.0 245.0 10502.0 324.0 10502.0 306.0 t 0 0 0 0 0 0 0 0 112.0 103.0 0.0 10502.0 0.0 10502.0 937.0 96.0

MA0805.1_shift8 (TBX1)
; local_words_8nt_m21 versus MA0805.1 (TBX1); m=34/41; ncol2=8; w=7; offset=5; strand=D; shift=8; score=0.456839; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 11931.0 1560.0 0.0 28.0 0.0 142.0 141.0 11931.0 c 0 0 0 0 0 0 0 0 113.0 711.0 0.0 214.0 5.0 613.0 720.0 33.0 g 0 0 0 0 0 0 0 0 1007.0 11931.0 11931.0 141.0 11931.0 109.0 11931.0 18.0 t 0 0 0 0 0 0 0 0 564.0 669.0 0.0 11931.0 0.0 11931.0 1039.0 0.0

MA0801.1_shift8 (MGA)
; local_words_8nt_m21 versus MA0801.1 (MGA); m=35/41; ncol2=8; w=7; offset=5; strand=D; shift=8; score=0.452632; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 30489.0 4310.0 16.0 12.0 14.0 1042.0 689.0 30489.0 c 0 0 0 0 0 0 0 0 1151.0 3737.0 509.0 3534.0 1.0 3089.0 1753.0 110.0 g 0 0 0 0 0 0 0 0 8873.0 30489.0 30489.0 96.0 30489.0 381.0 30489.0 920.0 t 0 0 0 0 0 0 0 0 4160.0 1929.0 104.0 30489.0 11.0 30489.0 6465.0 274.0

MA1567.1_shift7 (TBX6)
; local_words_8nt_m21 versus MA1567.1 (TBX6); m=36/41; ncol2=10; w=8; offset=4; strand=D; shift=7; score=0.448001; -------ragGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 2998.0 11087.0 1882.0 58.0 44.0 14.0 552.0 1430.0 11087.0 c 0 0 0 0 0 0 0 1630.0 1173.0 2913.0 63.0 1002.0 0.0 3053.0 4876.0 652.0 g 0 0 0 0 0 0 0 4003.0 3347.0 11087.0 11087.0 0.0 11087.0 320.0 11087.0 2251.0 t 0 0 0 0 0 0 0 2456.0 2157.0 1058.0 0.0 11087.0 12.0 11087.0 5964.0 713.0

MA1565.1_shift6 (TBX18)
; local_words_8nt_m21 versus MA1565.1 (TBX18); m=37/41; ncol2=12; w=9; offset=3; strand=D; shift=6; score=0.444799; ------rrAGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 216.0 343.0 778.0 73.0 14.0 7.0 21.0 100.0 52.0 778.0 c 0 0 0 0 0 0 86.0 103.0 62.0 57.0 0.0 80.0 6.0 98.0 161.0 1.0 g 0 0 0 0 0 0 316.0 435.0 159.0 778.0 778.0 0.0 778.0 109.0 778.0 5.0 t 0 0 0 0 0 0 160.0 148.0 59.0 47.0 0.0 778.0 2.0 778.0 32.0 34.0

MA1566.1_shift7 (TBX3)
; local_words_8nt_m21 versus MA1566.1 (TBX3); m=38/41; ncol2=10; w=8; offset=4; strand=D; shift=7; score=0.427188; -------ragGTGTsa ; cor=; Ncor= a 0 0 0 0 0 0 0 644.0 2544.0 427.0 6.0 16.0 0.0 115.0 170.0 2544.0 c 0 0 0 0 0 0 0 399.0 481.0 862.0 45.0 735.0 0.0 634.0 1471.0 410.0 g 0 0 0 0 0 0 0 1003.0 1207.0 2544.0 2544.0 0.0 2544.0 155.0 2544.0 947.0 t 0 0 0 0 0 0 0 497.0 760.0 302.0 0.0 2544.0 0.0 2544.0 1112.0 484.0

MA0690.1_shift7 (TBX21)
; local_words_8nt_m21 versus MA0690.1 (TBX21); m=39/41; ncol2=10; w=8; offset=4; strand=D; shift=7; score=0.412627; -------aAGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 2322.0 4395.0 612.0 2.0 6.0 1.0 185.0 80.0 4395.0 c 0 0 0 0 0 0 0 263.0 30.0 239.0 17.0 180.0 0.0 331.0 126.0 0.0 g 0 0 0 0 0 0 0 937.0 359.0 4395.0 4395.0 16.0 4395.0 34.0 4395.0 38.0 t 0 0 0 0 0 0 0 872.0 146.0 398.0 33.0 4395.0 2.0 4395.0 364.0 0.0

MA0688.1_shift7 (TBX2)
; local_words_8nt_m21 versus MA0688.1 (TBX2); m=40/41; ncol2=11; w=8; offset=4; strand=D; shift=7; score=0.411621; -------wAGGTGTgA ; cor=; Ncor= a 0 0 0 0 0 0 0 1258.0 3181.0 602.0 9.0 0.0 26.0 307.0 310.0 3181.0 c 0 0 0 0 0 0 0 402.0 59.0 519.0 36.0 329.0 0.0 392.0 1289.0 26.0 g 0 0 0 0 0 0 0 717.0 716.0 3181.0 3181.0 21.0 3181.0 27.0 3181.0 125.0 t 0 0 0 0 0 0 0 804.0 442.0 353.0 14.0 3181.0 12.0 3181.0 1409.0 120.0

MA0802.1_shift8 (TBR1)
; local_words_8nt_m21 versus MA0802.1 (TBR1); m=41/41; ncol2=10; w=7; offset=5; strand=D; shift=8; score=0.405663; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 34509.0 6880.0 70.0 39.0 0.0 2386.0 1175.0 34509.0 c 0 0 0 0 0 0 0 0 359.0 3255.0 254.0 1759.0 6.0 4742.0 2551.0 90.0 g 0 0 0 0 0 0 0 0 3329.0 34509.0 34509.0 88.0 34509.0 157.0 34509.0 584.0 t 0 0 0 0 0 0 0 0 1433.0 4480.0 213.0 34509.0 4.0 34509.0 7001.0 205.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m19_shift4 ; 36 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m19_shift4 (oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19)
; oligos_7nt_mkv4_m19 (oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19); m=0 (reference); ncol1=12; shift=4; ncol=16; ----krACAGTTGTyh ; Alignment reference a 0 0 0 0 45 84 221 3 220 2 7 5 8 5 40 64 c 0 0 0 0 56 49 6 227 2 12 12 3 7 8 73 72 g 0 0 0 0 71 64 4 3 3 200 39 3 212 12 37 37 t 0 0 0 0 61 36 2 0 8 19 175 222 6 208 83 60

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; oligos_7nt_mkv4_m19 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=1/35; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.855861; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0

MA1641.1_shift4 (MYF5)
; oligos_7nt_mkv4_m19 versus MA1641.1 (MYF5); m=2/35; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.826657; ----gvaCAGCTGtbc ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0

MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)
; oligos_7nt_mkv4_m19 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=3/35; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.811381; ----rmaCAGCTGtky ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0

MA0667.1_rc_shift5 (MYF6_rc)
; oligos_7nt_mkv4_m19 versus MA0667.1_rc (MYF6_rc); m=4/35; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.75609; -----RACAGyTGTT- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 c 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 g 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 t 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0

MA1618.1_shift4 (Ptf1a)
; oligos_7nt_mkv4_m19 versus MA1618.1 (Ptf1a); m=5/35; ncol2=13; w=12; offset=0; strand=D; shift=4; score=0.754425; ----dmaCAGATGttk ; cor=; Ncor= a 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 c 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 g 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 t 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0

MA0783.1_shift4 (PKNOX2)
; oligos_7nt_mkv4_m19 versus MA0783.1 (PKNOX2); m=6/35; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.746063; ----TGACAGsTGTCA ; cor=; Ncor= a 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 c 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 g 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 t 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0

MA0797.1_shift4 (TGIF2)
; oligos_7nt_mkv4_m19 versus MA0797.1 (TGIF2); m=7/35; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.735814; ----TGACAGsTGTCA ; cor=; Ncor= a 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 c 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 g 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 t 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0

MA0796.1_shift4 (TGIF1)
; oligos_7nt_mkv4_m19 versus MA0796.1 (TGIF1); m=8/35; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.731315; ----TGACAGCTGTCA ; cor=; Ncor= a 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 c 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 g 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 t 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0

MA1571.1_rc_shift4 (TGIF2LX_rc)
; oligos_7nt_mkv4_m19 versus MA1571.1_rc (TGIF2LX_rc); m=9/35; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.724582; ----TGACAgcTGTCA ; cor=; Ncor= a 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 c 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 g 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 t 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0

MA1621.1_rc_shift3 (Rbpjl_rc)
; oligos_7nt_mkv4_m19 versus MA1621.1_rc (Rbpjl_rc); m=10/35; ncol2=14; w=12; offset=-1; strand=R; shift=3; score=0.720777; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0

MA0499.2_rc_shift3 (MYOD1_rc)
; oligos_7nt_mkv4_m19 versus MA0499.2_rc (MYOD1_rc); m=11/35; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.718739; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0

MA1572.1_rc_shift4 (TGIF2LY_rc)
; oligos_7nt_mkv4_m19 versus MA1572.1_rc (TGIF2LY_rc); m=12/35; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.715456; ----TGACAgcTGTCA ; cor=; Ncor= a 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 c 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 g 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 t 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0

MA0745.2_rc_shift3 (SNAI2_rc)
; oligos_7nt_mkv4_m19 versus MA0745.2_rc (SNAI2_rc); m=13/35; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.70991; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0

MA0500.2_rc_shift4 (MYOG_rc)
; oligos_7nt_mkv4_m19 versus MA0500.2_rc (MYOG_rc); m=14/35; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.709012; ----sarCAGCTGyts ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0

MA0100.3_rc_shift5 (MYB_rc)
; oligos_7nt_mkv4_m19 versus MA0100.3_rc (MYB_rc); m=15/35; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.70242; -----kdCAGTTGvk- ; cor=; Ncor= a 0 0 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 c 0 0 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 g 0 0 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 t 0 0 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0

MA0665.1_rc_shift5 (MSC_rc)
; oligos_7nt_mkv4_m19 versus MA0665.1_rc (MSC_rc); m=16/35; ncol2=10; w=10; offset=1; strand=R; shift=5; score= 0.692; -----AACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0

MA0832.1_shift3 (Tcf21)
; oligos_7nt_mkv4_m19 versus MA0832.1 (Tcf21); m=17/35; ncol2=14; w=12; offset=-1; strand=D; shift=3; score=0.688641; ---ryAACAGCTGTTr ; cor=; Ncor= a 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 c 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 g 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 t 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0

MA0521.1_shift5 (Tcf12)
; oligos_7nt_mkv4_m19 versus MA0521.1 (Tcf12); m=18/35; ncol2=11; w=11; offset=1; strand=D; shift=5; score=0.687713; -----rRCAGCTGswg ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0

MA1467.1_shift5 (ATOH1(var.2))
; oligos_7nt_mkv4_m19 versus MA1467.1 (ATOH1(var.2)); m=19/35; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.683464; -----AACAGCTGTY- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0

MA0820.1_rc_shift5 (FIGLA_rc)
; oligos_7nt_mkv4_m19 versus MA0820.1_rc (FIGLA_rc); m=20/35; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.660035; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0

MA1485.1_rc_shift3 (FERD3L_rc)
; oligos_7nt_mkv4_m19 versus MA1485.1_rc (FERD3L_rc); m=21/35; ncol2=14; w=12; offset=-1; strand=R; shift=3; score=0.655784; ---GTrACAGCTGkyr ; cor=; Ncor= a 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 c 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 g 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 t 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0

MA1123.2_shift3 (TWIST1)
; oligos_7nt_mkv4_m19 versus MA1123.2 (TWIST1); m=22/35; ncol2=13; w=12; offset=-1; strand=D; shift=3; score=0.653851; ---awwCCAGATGtbt ; cor=; Ncor= a 0 0 0 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 6823.0 c 0 0 0 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 6561.0 g 0 0 0 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 6213.0 t 0 0 0 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0 7736.0

MA1472.1_shift5 (BHLHA15(var.2))
; oligos_7nt_mkv4_m19 versus MA1472.1 (BHLHA15(var.2)); m=23/35; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.652755; -----avCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0

MA0698.1_shift3 (ZBTB18)
; oligos_7nt_mkv4_m19 versus MA0698.1 (ZBTB18); m=24/35; ncol2=13; w=12; offset=-1; strand=D; shift=3; score=0.649414; ---hatCCAGATGTkb ; cor=; Ncor= a 0 0 0 3561.0 7064.0 1177.0 3618.0 21.0 13670.0 3.0 13670.0 14.0 3.0 48.0 210.0 1725.0 c 0 0 0 4188.0 753.0 1937.0 13670.0 13670.0 5.0 245.0 1048.0 15.0 1.0 314.0 177.0 4042.0 g 0 0 0 2499.0 2535.0 5212.0 1899.0 3.0 33.0 13670.0 278.0 94.0 13670.0 36.0 5530.0 3876.0 t 0 0 0 3423.0 3319.0 13670.0 60.0 8.0 206.0 6.0 297.0 13670.0 1.0 13670.0 8140.0 4027.0

MA0691.1_shift5 (TFAP4)
; oligos_7nt_mkv4_m19 versus MA0691.1 (TFAP4); m=25/35; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.620204; -----AwCAGCTGwT- ; cor=; Ncor= a 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 c 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 g 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 t 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0

MA1559.1_shift5 (SNAI3)
; oligos_7nt_mkv4_m19 versus MA1559.1 (SNAI3); m=26/35; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.615882; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0

MA0091.1_rc_shift5 (TAL1::TCF3_rc)
; oligos_7nt_mkv4_m19 versus MA0091.1_rc (TAL1::TCF3_rc); m=27/35; ncol2=12; w=11; offset=1; strand=R; shift=5; score=0.611326; -----AmCAKMTGkTc ; cor=; Ncor= a 0 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 c 0 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 g 0 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 t 0 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0

MA1570.1_shift5 (TFAP4(var.2))
; oligos_7nt_mkv4_m19 versus MA1570.1 (TFAP4(var.2)); m=28/35; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.598155; -----ahCAyrTGkt- ; cor=; Ncor= a 0 0 0 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 c 0 0 0 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 g 0 0 0 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 t 0 0 0 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0

MA0816.1_rc_shift5 (Ascl2_rc)
; oligos_7nt_mkv4_m19 versus MA0816.1_rc (Ascl2_rc); m=29/35; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.593372; -----rrCAGCTGyt- ; cor=; Ncor= a 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 c 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 g 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 t 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0

MA1558.1_shift5 (SNAI1)
; oligos_7nt_mkv4_m19 versus MA1558.1 (SNAI1); m=30/35; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.592466; -----drCAGGTGyr- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0

MA0743.2_shift0 (SCRT1)
; oligos_7nt_mkv4_m19 versus MA0743.2 (SCRT1); m=31/35; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.543924; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0

MA0744.2_shift0 (SCRT2)
; oligos_7nt_mkv4_m19 versus MA0744.2 (SCRT2); m=32/35; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.534522; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0

MA0807.1_shift8 (TBX5)
; oligos_7nt_mkv4_m19 versus MA0807.1 (TBX5); m=33/35; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.482617; --------AGGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0

MA0806.1_shift8 (TBX4)
; oligos_7nt_mkv4_m19 versus MA0806.1 (TBX4); m=34/35; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.48231; --------AGGTGTgA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0

MA0803.1_shift8 (TBX15)
; oligos_7nt_mkv4_m19 versus MA0803.1 (TBX15); m=35/35; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.473122; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10502.0 458.0 19.0 61.0 0.0 140.0 44.0 10502.0 c 0 0 0 0 0 0 0 0 74.0 101.0 7.0 175.0 8.0 435.0 454.0 71.0 g 0 0 0 0 0 0 0 0 664.0 10502.0 10502.0 245.0 10502.0 324.0 10502.0 306.0 t 0 0 0 0 0 0 0 0 112.0 103.0 0.0 10502.0 0.0 10502.0 937.0 96.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m46_shift4 ; 28 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m46_shift4 (oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46)
; oligos_7nt_mkv4_m46 (oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46); m=0 (reference); ncol1=12; shift=4; ncol=16; ----gvACAAGTGTky ; Alignment reference a 0 0 0 0 52 70 210 3 212 161 18 2 3 2 42 47 c 0 0 0 0 52 58 4 217 6 16 25 4 3 7 56 70 g 0 0 0 0 72 62 3 2 2 40 180 2 215 8 63 49 t 0 0 0 0 49 35 8 3 5 8 2 217 4 208 64 59

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; oligos_7nt_mkv4_m46 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=1/27; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.854974; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0

MA1621.1_rc_shift3 (Rbpjl_rc)
; oligos_7nt_mkv4_m46 versus MA1621.1_rc (Rbpjl_rc); m=2/27; ncol2=14; w=12; offset=-1; strand=R; shift=3; score=0.723844; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0

MA1641.1_shift4 (MYF5)
; oligos_7nt_mkv4_m46 versus MA1641.1 (MYF5); m=3/27; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.717432; ----gvaCAGCTGtbc ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0

MA0745.2_rc_shift3 (SNAI2_rc)
; oligos_7nt_mkv4_m46 versus MA0745.2_rc (SNAI2_rc); m=4/27; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.715199; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0

MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)
; oligos_7nt_mkv4_m46 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=5/27; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.711246; ----rmaCAGCTGtky ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0

MA0783.1_shift4 (PKNOX2)
; oligos_7nt_mkv4_m46 versus MA0783.1 (PKNOX2); m=6/27; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.704948; ----TGACAGsTGTCA ; cor=; Ncor= a 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 c 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 g 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 t 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0

MA0499.2_rc_shift3 (MYOD1_rc)
; oligos_7nt_mkv4_m46 versus MA0499.2_rc (MYOD1_rc); m=7/27; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.694341; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0

MA0819.1_shift5 (CLOCK)
; oligos_7nt_mkv4_m46 versus MA0819.1 (CLOCK); m=8/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.689041; -----aACACGTGty- ; cor=; Ncor= a 0 0 0 0 0 226.0 429.0 11.0 429.0 16.0 40.0 3.0 0.0 1.0 89.0 0 c 0 0 0 0 0 35.0 85.0 429.0 5.0 429.0 0.0 5.0 3.0 152.0 128.0 0 g 0 0 0 0 0 93.0 89.0 2.0 15.0 0.0 429.0 5.0 429.0 110.0 39.0 0 t 0 0 0 0 0 75.0 13.0 2.0 0.0 28.0 0.0 429.0 9.0 429.0 174.0 0

MA0667.1_shift5 (MYF6)
; oligos_7nt_mkv4_m46 versus MA0667.1 (MYF6); m=9/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.675947; -----AACArCTGTY- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 c 0 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 g 0 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 t 0 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0

MA0820.1_rc_shift5 (FIGLA_rc)
; oligos_7nt_mkv4_m46 versus MA0820.1_rc (FIGLA_rc); m=10/27; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.651472; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0

MA1618.1_shift4 (Ptf1a)
; oligos_7nt_mkv4_m46 versus MA1618.1 (Ptf1a); m=11/27; ncol2=13; w=12; offset=0; strand=D; shift=4; score=0.649962; ----dmaCAGATGttk ; cor=; Ncor= a 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 c 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 g 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 t 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0

MA1559.1_shift5 (SNAI3)
; oligos_7nt_mkv4_m46 versus MA1559.1 (SNAI3); m=12/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.624394; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0

MA1558.1_shift5 (SNAI1)
; oligos_7nt_mkv4_m46 versus MA1558.1 (SNAI1); m=13/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.622662; -----drCAGGTGyr- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0

MA0626.1_shift5 (Npas2)
; oligos_7nt_mkv4_m46 versus MA0626.1 (Npas2); m=14/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.617218; -----dsCACGTGtm- ; cor=; Ncor= a 0 0 0 0 0 273.0 154.0 0.0 999.0 81.0 81.0 0.0 81.0 74.0 297.0 0 c 0 0 0 0 0 177.0 377.0 999.0 0.0 918.0 0.0 0.0 0.0 172.0 299.0 0 g 0 0 0 0 0 293.0 420.0 0.0 0.0 0.0 918.0 0.0 918.0 188.0 202.0 0 t 0 0 0 0 0 257.0 48.0 0.0 0.0 0.0 0.0 999.0 0.0 566.0 202.0 0

MA1570.1_shift5 (TFAP4(var.2))
; oligos_7nt_mkv4_m46 versus MA1570.1 (TFAP4(var.2)); m=15/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.616954; -----ahCAyrTGkt- ; cor=; Ncor= a 0 0 0 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 c 0 0 0 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 g 0 0 0 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 t 0 0 0 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0

MA0665.1_rc_shift5 (MSC_rc)
; oligos_7nt_mkv4_m46 versus MA0665.1_rc (MSC_rc); m=16/27; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.605362; -----AACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0

MA1108.2_rc_shift5 (MXI1_rc)
; oligos_7nt_mkv4_m46 versus MA1108.2_rc (MXI1_rc); m=17/27; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.594767; -----gmCATGTGby- ; cor=; Ncor= a 0 0 0 0 0 5366.0 6658.0 175.0 21541.0 0.0 468.0 7.0 460.0 3945.0 5212.0 0 c 0 0 0 0 0 5394.0 7228.0 21232.0 0.0 1542.0 18.0 170.0 97.0 6078.0 6326.0 0 g 0 0 0 0 0 6343.0 5329.0 114.0 507.0 0.0 21552.0 1.0 21382.0 5841.0 4724.0 0 t 0 0 0 0 0 4945.0 2833.0 527.0 0.0 20506.0 10.0 21870.0 109.0 6184.0 5786.0 0

MA1467.1_rc_shift5 (ATOH1(var.2)_rc)
; oligos_7nt_mkv4_m46 versus MA1467.1_rc (ATOH1(var.2)_rc); m=18/27; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.58718; -----RACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 c 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 g 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 t 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0

MA0743.2_shift0 (SCRT1)
; oligos_7nt_mkv4_m46 versus MA0743.2 (SCRT1); m=19/27; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.552842; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0

MA0744.2_shift0 (SCRT2)
; oligos_7nt_mkv4_m46 versus MA0744.2 (SCRT2); m=20/27; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.538975; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0

MA0806.1_shift8 (TBX4)
; oligos_7nt_mkv4_m46 versus MA0806.1 (TBX4); m=21/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.533639; --------AGGTGTgA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0

MA0807.1_shift8 (TBX5)
; oligos_7nt_mkv4_m46 versus MA0807.1 (TBX5); m=22/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.529008; --------AGGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0

MA0805.1_shift8 (TBX1)
; oligos_7nt_mkv4_m46 versus MA0805.1 (TBX1); m=23/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.506982; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 11931.0 1560.0 0.0 28.0 0.0 142.0 141.0 11931.0 c 0 0 0 0 0 0 0 0 113.0 711.0 0.0 214.0 5.0 613.0 720.0 33.0 g 0 0 0 0 0 0 0 0 1007.0 11931.0 11931.0 141.0 11931.0 109.0 11931.0 18.0 t 0 0 0 0 0 0 0 0 564.0 669.0 0.0 11931.0 0.0 11931.0 1039.0 0.0

MA0803.1_shift8 (TBX15)
; oligos_7nt_mkv4_m46 versus MA0803.1 (TBX15); m=24/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.496034; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10502.0 458.0 19.0 61.0 0.0 140.0 44.0 10502.0 c 0 0 0 0 0 0 0 0 74.0 101.0 7.0 175.0 8.0 435.0 454.0 71.0 g 0 0 0 0 0 0 0 0 664.0 10502.0 10502.0 245.0 10502.0 324.0 10502.0 306.0 t 0 0 0 0 0 0 0 0 112.0 103.0 0.0 10502.0 0.0 10502.0 937.0 96.0

MA0801.1_shift8 (MGA)
; oligos_7nt_mkv4_m46 versus MA0801.1 (MGA); m=25/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.495173; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 30489.0 4310.0 16.0 12.0 14.0 1042.0 689.0 30489.0 c 0 0 0 0 0 0 0 0 1151.0 3737.0 509.0 3534.0 1.0 3089.0 1753.0 110.0 g 0 0 0 0 0 0 0 0 8873.0 30489.0 30489.0 96.0 30489.0 381.0 30489.0 920.0 t 0 0 0 0 0 0 0 0 4160.0 1929.0 104.0 30489.0 11.0 30489.0 6465.0 274.0

MA0622.1_rc_shift6 (Mlxip_rc)
; oligos_7nt_mkv4_m46 versus MA0622.1_rc (Mlxip_rc); m=26/27; ncol2=8; w=8; offset=2; strand=R; shift=6; score=0.467273; ------mCACGTGv-- ; cor=; Ncor= a 0 0 0 0 0 0 499.0 0.0 999.0 0.0 0.0 0.0 0.0 263.0 0 0 c 0 0 0 0 0 0 250.0 999.0 0.0 999.0 0.0 0.0 0.0 421.0 0 0 g 0 0 0 0 0 0 63.0 0.0 0.0 0.0 999.0 0.0 999.0 263.0 0 0 t 0 0 0 0 0 0 188.0 0.0 0.0 0.0 0.0 999.0 0.0 53.0 0 0

MA0802.1_shift8 (TBR1)
; oligos_7nt_mkv4_m46 versus MA0802.1 (TBR1); m=27/27; ncol2=10; w=8; offset=4; strand=D; shift=8; score=0.443231; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 34509.0 6880.0 70.0 39.0 0.0 2386.0 1175.0 34509.0 c 0 0 0 0 0 0 0 0 359.0 3255.0 254.0 1759.0 6.0 4742.0 2551.0 90.0 g 0 0 0 0 0 0 0 0 3329.0 34509.0 34509.0 88.0 34509.0 157.0 34509.0 584.0 t 0 0 0 0 0 0 0 0 1433.0 4480.0 213.0 34509.0 4.0 34509.0 7001.0 205.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m28_shift5 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m28_shift5 (oligos_6nt_mkv3_m28oligos_6nt_mkv3_m28)
; oligos_6nt_mkv3_m28 (oligos_6nt_mkv3_m28oligos_6nt_mkv3_m28); m=0 (reference); ncol1=10; shift=5; ncol=21; -----ssCTTGGChs------ ; Alignment reference a 0 0 0 0 0 96 111 0 0 0 0 0 0 214 94 0 0 0 0 0 0 c 0 0 0 0 0 167 210 624 0 0 0 0 624 184 167 0 0 0 0 0 0 g 0 0 0 0 0 209 192 0 0 0 624 624 0 40 214 0 0 0 0 0 0 t 0 0 0 0 0 152 111 0 624 624 0 0 0 186 149 0 0 0 0 0 0

MA0161.2_shift5 (NFIC)
; oligos_6nt_mkv3_m28 versus MA0161.2 (NFIC); m=1/9; ncol2=11; w=10; offset=0; strand=D; shift=5; score=0.850862; -----twCTTGGCAsa----- ; cor=; Ncor= a 0 0 0 0 0 2615.0 3896.0 412.0 154.0 352.0 310.0 223.0 264.0 10158.0 2626.0 3344.0 0 0 0 0 0 c 0 0 0 0 0 2647.0 2137.0 10542.0 303.0 333.0 129.0 121.0 10725.0 397.0 2951.0 2712.0 0 0 0 0 0 g 0 0 0 0 0 2478.0 2086.0 329.0 369.0 177.0 11087.0 10973.0 88.0 478.0 3186.0 2760.0 0 0 0 0 0 t 0 0 0 0 0 3867.0 3488.0 324.0 10781.0 10745.0 81.0 290.0 530.0 574.0 2844.0 2791.0 0 0 0 0 0

MA0670.1_rc_shift6 (NFIA_rc)
; oligos_6nt_mkv3_m28 versus MA0670.1_rc (NFIA_rc); m=2/9; ncol2=10; w=9; offset=1; strand=R; shift=6; score=0.694397; ------wyTTGGCAcc----- ; cor=; Ncor= a 0 0 0 0 0 0 32052.0 17410.0 0.0 0.0 0.0 0.0 0.0 95496.0 23019.0 22282.0 0 0 0 0 0 c 0 0 0 0 0 0 16505.0 29423.0 0.0 0.0 0.0 0.0 98253.0 0.0 35089.0 24321.0 0 0 0 0 0 g 0 0 0 0 0 0 14439.0 21852.0 0.0 0.0 93394.0 93597.0 0.0 0.0 14274.0 22347.0 0 0 0 0 0 t 0 0 0 0 0 0 27709.0 23752.0 89418.0 89071.0 0.0 0.0 0.0 0.0 20706.0 22969.0 0 0 0 0 0

MA0671.1_rc_shift7 (NFIX_rc)
; oligos_6nt_mkv3_m28 versus MA0671.1_rc (NFIX_rc); m=3/9; ncol2=9; w=8; offset=2; strand=R; shift=7; score=0.640024; -------byTGGCacs----- ; cor=; Ncor= a 0 0 0 0 0 0 0 6439.0 2399.0 110.0 0.0 29.0 2539.0 32864.0 8043.0 7378.0 0 0 0 0 0 c 0 0 0 0 0 0 0 9135.0 12688.0 180.0 0.0 3257.0 32864.0 5911.0 10855.0 8725.0 0 0 0 0 0 g 0 0 0 0 0 0 0 9039.0 1356.0 2230.0 32864.0 32864.0 186.0 9695.0 6134.0 8810.0 0 0 0 0 0 t 0 0 0 0 0 0 0 8251.0 32864.0 32864.0 0.0 3.0 132.0 11279.0 7832.0 7951.0 0 0 0 0 0

MA0739.1_rc_shift6 (Hic1_rc)
; oligos_6nt_mkv3_m28 versus MA0739.1_rc (Hic1_rc); m=4/9; ncol2=9; w=9; offset=1; strand=R; shift=6; score=0.634356; ------gGtTGGCAy------ ; cor=; Ncor= a 0 0 0 0 0 0 2692.0 1488.0 614.0 317.0 68.0 0.0 183.0 11007.0 666.0 0 0 0 0 0 0 c 0 0 0 0 0 0 1884.0 1629.0 2267.0 3.0 31.0 121.0 11007.0 73.0 4670.0 0 0 0 0 0 0 g 0 0 0 0 0 0 4822.0 11007.0 1986.0 1999.0 11007.0 11007.0 588.0 422.0 719.0 0 0 0 0 0 0 t 0 0 0 0 0 0 1610.0 1220.0 6140.0 9008.0 88.0 50.0 950.0 62.0 6337.0 0 0 0 0 0 0

MA0502.2_shift4 (NFYB)
; oligos_6nt_mkv3_m28 versus MA0502.2 (NFYB); m=5/9; ncol2=12; w=10; offset=-1; strand=D; shift=4; score=0.596895; ----cyCATTGGCCar----- ; cor=; Ncor= a 0 0 0 0 813.0 438.0 193.0 6983.0 134.0 84.0 53.0 63.0 154.0 154.0 3121.0 2317.0 0 0 0 0 0 c 0 0 0 0 3803.0 2705.0 5447.0 181.0 241.0 37.0 41.0 58.0 6488.0 5823.0 1670.0 1489.0 0 0 0 0 0 g 0 0 0 0 1421.0 901.0 1481.0 57.0 227.0 102.0 7250.0 7272.0 173.0 139.0 1635.0 2663.0 0 0 0 0 0 t 0 0 0 0 1417.0 3410.0 333.0 233.0 6852.0 7231.0 110.0 61.0 639.0 1338.0 1028.0 985.0 0 0 0 0 0

MA1599.1_rc_shift0 (ZNF682_rc)
; oligos_6nt_mkv3_m28 versus MA1599.1_rc (ZNF682_rc); m=6/9; ncol2=16; w=10; offset=-5; strand=R; shift=0; score=0.496466; aywGGGGCTTrGCCyg----- ; cor=; Ncor= a 412.0 180.0 456.0 64.0 7.0 11.0 33.0 7.0 6.0 13.0 358.0 58.0 36.0 89.0 171.0 216.0 0 0 0 0 0 c 194.0 300.0 118.0 32.0 10.0 9.0 13.0 1038.0 22.0 20.0 55.0 105.0 877.0 774.0 349.0 214.0 0 0 0 0 0 g 260.0 254.0 117.0 896.0 1034.0 1033.0 999.0 7.0 31.0 72.0 597.0 795.0 42.0 85.0 234.0 423.0 0 0 0 0 0 t 192.0 324.0 367.0 66.0 7.0 5.0 13.0 6.0 999.0 953.0 48.0 100.0 103.0 110.0 304.0 205.0 0 0 0 0 0

MA1540.1_rc_shift2 (NR5A1_rc)
; oligos_6nt_mkv3_m28 versus MA1540.1_rc (NR5A1_rc); m=7/9; ncol2=11; w=8; offset=-3; strand=R; shift=2; score=0.443243; --ryGrCCTTGrm-------- ; cor=; Ncor= a 0 0 1126.0 287.0 651.0 4118.0 0.0 86.0 143.0 4.0 135.0 2428.0 1093.0 0 0 0 0 0 0 0 0 c 0 0 820.0 1684.0 218.0 381.0 4118.0 4118.0 137.0 287.0 716.0 902.0 1268.0 0 0 0 0 0 0 0 0 g 0 0 1323.0 242.0 4118.0 2021.0 0.0 0.0 128.0 0.0 4118.0 1690.0 991.0 0 0 0 0 0 0 0 0 t 0 0 849.0 4118.0 70.0 951.0 0.0 0.0 4118.0 4118.0 84.0 906.0 767.0 0 0 0 0 0 0 0 0

MA1643.1_rc_shift5 (NFIB_rc)
; oligos_6nt_mkv3_m28 versus MA1643.1_rc (NFIB_rc); m=8/9; ncol2=21; w=10; offset=0; strand=R; shift=5; score=0.434288; -----tdctTGGCAcmrTGCC ; cor=; Ncor= a 0 0 0 0 0 1050.0 1193.0 428.0 211.0 70.0 15.0 20.0 180.0 3083.0 468.0 1388.0 2175.0 544.0 18.0 16.0 11.0 c 0 0 0 0 0 984.0 874.0 2969.0 1055.0 36.0 11.0 23.0 4191.0 451.0 2822.0 1149.0 608.0 175.0 27.0 4372.0 4389.0 g 0 0 0 0 0 1015.0 1193.0 467.0 161.0 373.0 4382.0 4357.0 31.0 181.0 532.0 792.0 1190.0 519.0 4223.0 12.0 11.0 t 0 0 0 0 0 1367.0 1156.0 552.0 2989.0 3937.0 8.0 16.0 14.0 701.0 594.0 1087.0 443.0 3178.0 148.0 16.0 5.0

MA0119.1_rc_shift8 (NFIC::TLX1_rc)
; oligos_6nt_mkv3_m28 versus MA0119.1_rc (NFIC::TLX1_rc); m=9/9; ncol2=14; w=7; offset=3; strand=R; shift=8; score=0.400821; --------TTGGCwyssTGCC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 7.0 3.0 2.0 1.0 1.0 0.0 0.0 0.0 c 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 16.0 2.0 5.0 4.0 5.0 0.0 0.0 16.0 16.0 g 0 0 0 0 0 0 0 0 0.0 0.0 16.0 16.0 0.0 3.0 1.0 8.0 8.0 1.0 16.0 0.0 0.0 t 0 0 0 0 0 0 0 0 14.0 16.0 0.0 0.0 0.0 4.0 7.0 2.0 2.0 14.0 0.0 0.0 0.0

One-to-n matrix alignment; reference matrix: dyads_m11_shift1 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m11_shift1 (dyads_m11dyads_m11)
; dyads_m11 (dyads_m11dyads_m11); m=0 (reference); ncol1=10; shift=1; ncol=16; -wvACCACAgs----- ; Alignment reference a 0 197 213 751 0 0 751 0 751 123 175 0 0 0 0 0 c 0 180 241 0 751 749 0 751 0 163 237 0 0 0 0 0 g 0 140 221 0 0 2 0 0 0 365 212 0 0 0 0 0 t 0 234 76 0 0 0 0 0 0 100 127 0 0 0 0 0

MA0002.2_rc_shift1 (RUNX1_rc)
; dyads_m11 versus MA0002.2_rc (RUNX1_rc); m=1/6; ncol2=11; w=10; offset=0; strand=R; shift=1; score=0.845237; -waaCCACAram---- ; cor=; Ncor= a 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 0 0 0 c 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 0 0 0 g 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 0 0 0 t 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0 0 0 0

MA0511.2_shift1 (RUNX2)
; dyads_m11 versus MA0511.2 (RUNX2); m=2/6; ncol2=9; w=9; offset=0; strand=D; shift=1; score=0.724813; -wAACCRCAa------ ; cor=; Ncor= a 0 3872.0 6621.0 6621.0 0.0 0.0 1914.0 0.0 6621.0 4202.0 0 0 0 0 0 0 c 0 1092.0 556.0 325.0 6621.0 6621.0 36.0 6621.0 476.0 677.0 0 0 0 0 0 0 g 0 326.0 1215.0 0.0 0.0 0.0 4707.0 0.0 458.0 1134.0 0 0 0 0 0 0 t 0 2748.0 582.0 0.0 0.0 0.0 120.0 0.0 191.0 607.0 0 0 0 0 0 0

MA0684.2_shift0 (RUNX3)
; dyads_m11 versus MA0684.2 (RUNX3); m=3/6; ncol2=12; w=10; offset=-1; strand=D; shift=0; score=0.675545; awAACCTCAawh---- ; cor=; Ncor= a 7768.0 9558.0 19136.0 26243.0 427.0 495.0 6357.0 611.0 26121.0 16137.0 8778.0 6879.0 0 0 0 0 c 6083.0 5007.0 2662.0 315.0 26293.0 26208.0 419.0 26015.0 414.0 3077.0 5994.0 6900.0 0 0 0 0 g 6685.0 3547.0 3500.0 431.0 198.0 385.0 1911.0 390.0 338.0 4696.0 5642.0 6372.0 0 0 0 0 t 6841.0 9265.0 2079.0 388.0 459.0 289.0 18690.0 361.0 504.0 3467.0 6963.0 7226.0 0 0 0 0

MA0695.1_shift0 (ZBTB7C)
; dyads_m11 versus MA0695.1 (ZBTB7C); m=4/6; ncol2=12; w=10; offset=-1; strand=D; shift=0; score=0.616246; rcgACCACCgam---- ; cor=; Ncor= a 272.0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 253.0 1018.0 333.0 0 0 0 0 c 118.0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 138.0 444.0 315.0 0 0 0 0 g 463.0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 527.0 251.0 196.0 0 0 0 0 t 164.0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 100.0 419.0 174.0 0 0 0 0

MA0130.1_shift2 (ZNF354C)
; dyads_m11 versus MA0130.1 (ZNF354C); m=5/6; ncol2=6; w=6; offset=1; strand=D; shift=2; score=0.498729; --mTCCAC-------- ; cor=; Ncor= a 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 0 c 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 0 g 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 0 t 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0 0

MA1514.1_shift2 (KLF17)
; dyads_m11 versus MA1514.1 (KLF17); m=6/6; ncol2=15; w=9; offset=1; strand=D; shift=2; score=0.412075; --mmCCACgCaCCCmt ; cor=; Ncor= a 0 0 8969.0 19057.0 221.0 144.0 28922.0 85.0 7236.0 4563.0 19142.0 827.0 132.0 221.0 12266.0 3892.0 c 0 0 14366.0 9728.0 30181.0 30201.0 197.0 30107.0 6958.0 29153.0 1076.0 29551.0 30200.0 30199.0 14825.0 4873.0 g 0 0 3318.0 2102.0 122.0 105.0 84.0 53.0 24407.0 104.0 5176.0 1410.0 201.0 80.0 3845.0 2368.0 t 0 0 3579.0 2132.0 114.0 87.0 2495.0 423.0 1243.0 373.0 8373.0 220.0 57.0 233.0 3318.0 23588.0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m6_shift1 ; 36 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m6_shift1 (oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6)
; oligos_8nt_mkv5_m6 (oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6); m=0 (reference); ncol1=13; shift=1; ncol=18; -sctCAGCTGTCmc---- ; Alignment reference a 0 155 187 156 3 832 6 5 4 2 4 11 224 121 0 0 0 0 c 0 240 292 161 830 1 18 820 2 3 10 747 280 354 0 0 0 0 g 0 259 204 145 3 5 806 11 3 823 8 16 143 170 0 0 0 0 t 0 186 157 378 4 2 10 4 831 12 818 66 193 195 0 0 0 0

MA0499.2_shift1 (MYOD1)
; oligos_8nt_mkv5_m6 versus MA0499.2 (MYOD1); m=1/35; ncol2=13; w=13; offset=0; strand=D; shift=1; score=0.841981; -cwgCACCTGTymy---- ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0 0

MA1641.1_rc_shift1 (MYF5_rc)
; oligos_8nt_mkv5_m6 versus MA1641.1_rc (MYF5_rc); m=2/35; ncol2=12; w=12; offset=0; strand=R; shift=1; score=0.831026; -gvaCAGCTGtbc----- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0 0 0

MA1619.1_rc_shift1 (Ptf1a(var.2)_rc)
; oligos_8nt_mkv5_m6 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=3/35; ncol2=12; w=12; offset=0; strand=R; shift=1; score=0.823899; -rmaCAGCTGtky----- ; cor=; Ncor= a 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 0 0 c 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 0 0 g 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 0 0 t 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0 0 0

MA0500.2_shift1 (MYOG)
; oligos_8nt_mkv5_m6 versus MA0500.2 (MYOG); m=4/35; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.78421; -sarCAGCTGyts----- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; oligos_8nt_mkv5_m6 versus MA0521.1_rc (Tcf12_rc); m=5/35; ncol2=11; w=11; offset=0; strand=R; shift=1; score=0.780335; -cwsCAGCTGYy------ ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0

MA0745.2_shift1 (SNAI2)
; oligos_8nt_mkv5_m6 versus MA0745.2 (SNAI2); m=6/35; ncol2=13; w=13; offset=0; strand=D; shift=1; score=0.751582; -aygCACCTGTmry---- ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0 0 0

MA1485.1_shift0 (FERD3L)
; oligos_8nt_mkv5_m6 versus MA1485.1 (FERD3L); m=7/35; ncol2=14; w=13; offset=-1; strand=D; shift=0; score=0.748579; GyrmCAGCTGTyAC---- ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 0 0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 0 0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 0 0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0 0 0

MA0832.1_rc_shift0 (Tcf21_rc)
; oligos_8nt_mkv5_m6 versus MA0832.1_rc (Tcf21_rc); m=8/35; ncol2=14; w=13; offset=-1; strand=R; shift=0; score=0.730642; ryAACAGCTGTTry---- ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0

MA1571.1_shift1 (TGIF2LX)
; oligos_8nt_mkv5_m6 versus MA1571.1 (TGIF2LX); m=9/35; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.725257; -TGACAgcTGTCA----- ; cor=; Ncor= a 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 0 0 0 c 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 0 0 0 g 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 0 0 0 t 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0 0 0 0

MA0796.1_rc_shift1 (TGIF1_rc)
; oligos_8nt_mkv5_m6 versus MA0796.1_rc (TGIF1_rc); m=10/35; ncol2=12; w=12; offset=0; strand=R; shift=1; score=0.72103; -TGACAGCTGTCA----- ; cor=; Ncor= a 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 0 0 c 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 0 0 g 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 0 0 t 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0 0 0

MA1618.1_shift1 (Ptf1a)
; oligos_8nt_mkv5_m6 versus MA1618.1 (Ptf1a); m=11/35; ncol2=13; w=13; offset=0; strand=D; shift=1; score=0.718922; -dmaCAGATGttkh---- ; cor=; Ncor= a 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 0 0 0 c 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 0 0 0 g 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 0 0 0 t 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0 0 0 0

MA1572.1_shift1 (TGIF2LY)
; oligos_8nt_mkv5_m6 versus MA1572.1 (TGIF2LY); m=12/35; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.714385; -TGACAgcTGTCA----- ; cor=; Ncor= a 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 0 0 c 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 0 0 g 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 0 0 t 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0 0 0

MA0797.1_rc_shift1 (TGIF2_rc)
; oligos_8nt_mkv5_m6 versus MA0797.1_rc (TGIF2_rc); m=13/35; ncol2=12; w=12; offset=0; strand=R; shift=1; score=0.708317; -TGACAsCTGTCA----- ; cor=; Ncor= a 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 0 0 c 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 0 0 g 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 0 0 t 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0 0 0

MA1593.1_rc_shift1 (ZNF317_rc)
; oligos_8nt_mkv5_m6 versus MA1593.1_rc (ZNF317_rc); m=14/35; ncol2=12; w=12; offset=0; strand=R; shift=1; score=0.704552; -wrTCTGCTGTyw----- ; cor=; Ncor= a 0 4421.0 3658.0 224.0 263.0 1601.0 237.0 206.0 717.0 178.0 1245.0 1378.0 5318.0 0 0 0 0 0 c 0 1481.0 1334.0 206.0 10730.0 289.0 223.0 10374.0 317.0 183.0 480.0 3670.0 1985.0 0 0 0 0 0 g 0 1709.0 4399.0 208.0 186.0 250.0 10608.0 192.0 85.0 10821.0 357.0 2141.0 1201.0 0 0 0 0 0 t 0 3852.0 2072.0 10825.0 284.0 9323.0 395.0 691.0 10344.0 281.0 9381.0 4274.0 2959.0 0 0 0 0 0

MA1642.1_rc_shift1 (NEUROG2(var.2)_rc)
; oligos_8nt_mkv5_m6 versus MA1642.1_rc (NEUROG2(var.2)_rc); m=15/35; ncol2=13; w=13; offset=0; strand=R; shift=1; score=0.700098; -brCCATCTGtyyy---- ; cor=; Ncor= a 0 7184.0 9704.0 4904.0 484.0 32515.0 275.0 2806.0 159.0 237.0 1750.0 4721.0 8378.0 7535.0 0 0 0 0 c 0 8709.0 7581.0 24998.0 33422.0 323.0 418.0 30392.0 301.0 317.0 8039.0 11114.0 10123.0 10813.0 0 0 0 0 g 0 9034.0 10441.0 2966.0 205.0 904.0 952.0 793.0 211.0 33559.0 8154.0 6467.0 6843.0 7353.0 0 0 0 0 t 0 9464.0 6665.0 1523.0 280.0 649.0 32746.0 400.0 33720.0 278.0 16448.0 12089.0 9047.0 8690.0 0 0 0 0

MA1621.1_shift0 (Rbpjl)
; oligos_8nt_mkv5_m6 versus MA1621.1 (Rbpjl); m=16/35; ncol2=14; w=13; offset=-1; strand=D; shift=0; score=0.698601; svmaCACCTGtsyc---- ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0 0

MA1620.1_shift1 (Ptf1a(var.3))
; oligos_8nt_mkv5_m6 versus MA1620.1 (Ptf1a(var.3)); m=17/35; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.697552; -rmaCACCTGtky----- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0 0 0

MA1467.1_shift2 (ATOH1(var.2))
; oligos_8nt_mkv5_m6 versus MA1467.1 (ATOH1(var.2)); m=18/35; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.691289; --AACAGCTGTY------ ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0

MA0783.1_rc_shift1 (PKNOX2_rc)
; oligos_8nt_mkv5_m6 versus MA0783.1_rc (PKNOX2_rc); m=19/35; ncol2=12; w=12; offset=0; strand=R; shift=1; score=0.668787; -TGACAsCTGTCA----- ; cor=; Ncor= a 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 0 0 c 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 0 0 g 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 0 0 t 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0 0 0

MA1472.1_shift2 (BHLHA15(var.2))
; oligos_8nt_mkv5_m6 versus MA1472.1 (BHLHA15(var.2)); m=20/35; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.663793; --avCAGCTGyy------ ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0 0

MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; oligos_8nt_mkv5_m6 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=21/35; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.656324; --csCAGCTGsg------ ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0

MA0691.1_rc_shift2 (TFAP4_rc)
; oligos_8nt_mkv5_m6 versus MA0691.1_rc (TFAP4_rc); m=22/35; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.638463; --AwCAGCTGwT------ ; cor=; Ncor= a 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 0 0 c 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 0 0 g 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 0 0 t 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0 0 0

MA1100.2_shift2 (ASCL1)
; oligos_8nt_mkv5_m6 versus MA1100.2 (ASCL1); m=23/35; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.626419; --rrCAGCTGcy------ ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0 0 0

MA0665.1_rc_shift2 (MSC_rc)
; oligos_8nt_mkv5_m6 versus MA0665.1_rc (MSC_rc); m=24/35; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.624649; --AACAGCTGTT------ ; cor=; Ncor= a 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 0 0 c 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 0 0 g 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 0 0 t 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0 0 0

MA1109.1_rc_shift0 (NEUROD1_rc)
; oligos_8nt_mkv5_m6 versus MA1109.1_rc (NEUROD1_rc); m=25/35; ncol2=13; w=12; offset=-1; strand=R; shift=0; score=0.620493; syrCCATCTGtyc----- ; cor=; Ncor= a 525.0 451.0 580.0 168.0 31.0 2157.0 21.0 90.0 18.0 12.0 47.0 298.0 566.0 0 0 0 0 0 c 628.0 599.0 418.0 1962.0 2231.0 19.0 77.0 2152.0 16.0 13.0 494.0 906.0 726.0 0 0 0 0 0 g 591.0 540.0 911.0 93.0 7.0 51.0 150.0 24.0 7.0 2240.0 452.0 323.0 429.0 0 0 0 0 0 t 538.0 692.0 373.0 59.0 13.0 55.0 2034.0 16.0 2241.0 17.0 1289.0 755.0 561.0 0 0 0 0 0

MA1123.2_shift0 (TWIST1)
; oligos_8nt_mkv5_m6 versus MA1123.2 (TWIST1); m=26/35; ncol2=13; w=12; offset=-1; strand=D; shift=0; score=0.615723; awwCCAGATGtbt----- ; cor=; Ncor= a 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 6823.0 0 0 0 0 0 c 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 6561.0 0 0 0 0 0 g 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 6213.0 0 0 0 0 0 t 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0 7736.0 0 0 0 0 0

MA0816.1_shift2 (Ascl2)
; oligos_8nt_mkv5_m6 versus MA0816.1 (Ascl2); m=27/35; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.614427; --arCAGCTGyy------ ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0

MA0667.1_shift2 (MYF6)
; oligos_8nt_mkv5_m6 versus MA0667.1 (MYF6); m=28/35; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.599686; --AACArCTGTY------ ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0 0 0

MA0048.2_shift2 (NHLH1)
; oligos_8nt_mkv5_m6 versus MA0048.2 (NHLH1); m=29/35; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.570345; --cGCAGCTGCk------ ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0 0

MA0820.1_shift2 (FIGLA)
; oligos_8nt_mkv5_m6 versus MA0820.1 (FIGLA); m=30/35; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.569947; --wmCACCTGkw------ ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0 0

MA0100.3_shift2 (MYB)
; oligos_8nt_mkv5_m6 versus MA0100.3 (MYB); m=31/35; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.543445; --mbCAACTGhm------ ; cor=; Ncor= a 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 0 0 0 0 c 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 0 0 0 0 g 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 0 0 0 0 t 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0 0 0 0 0

MA0774.1_rc_shift6 (MEIS2_rc)
; oligos_8nt_mkv5_m6 versus MA0774.1_rc (MEIS2_rc); m=32/35; ncol2=8; w=8; offset=5; strand=R; shift=6; score=0.513324; ------sCTGTCAa---- ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 0 0 0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 0 0 0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 0 0 0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0 0 0 0

MA0775.1_rc_shift6 (MEIS3_rc)
; oligos_8nt_mkv5_m6 versus MA0775.1_rc (MEIS3_rc); m=33/35; ncol2=8; w=8; offset=5; strand=R; shift=6; score=0.493776; ------scTGTCAw---- ; cor=; Ncor= a 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 0 0 0 c 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 0 0 0 g 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 0 0 0 t 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0 0 0 0

MA0498.2_rc_shift7 (MEIS1_rc)
; oligos_8nt_mkv5_m6 versus MA0498.2_rc (MEIS1_rc); m=34/35; ncol2=7; w=7; offset=6; strand=R; shift=7; score=0.451877; -------cTGTCAw---- ; cor=; Ncor= a 0 0 0 0 0 0 0 15106.0 3861.0 1155.0 0.0 0.0 77159.0 24921.0 0 0 0 0 c 0 0 0 0 0 0 0 29965.0 9263.0 0.0 672.0 77159.0 3174.0 9714.0 0 0 0 0 g 0 0 0 0 0 0 0 14864.0 0.0 77159.0 2903.0 1249.0 5575.0 18797.0 0 0 0 0 t 0 0 0 0 0 0 0 17224.0 77159.0 0.0 77159.0 0.0 8690.0 23727.0 0 0 0 0

MA0782.2_rc_shift4 (PKNOX1_rc)
; oligos_8nt_mkv5_m6 versus MA0782.2_rc (PKNOX1_rc); m=35/35; ncol2=15; w=10; offset=3; strand=R; shift=4; score=0.409887; ----yagCTGTCAcTCAw ; cor=; Ncor= a 0 0 0 0 9877.0 12900.0 6042.0 5092.0 2629.0 886.0 720.0 691.0 36918.0 7333.0 1196.0 1043.0 29794.0 10355.0 c 0 0 0 0 10296.0 9060.0 9128.0 27367.0 2408.0 580.0 2459.0 37713.0 1027.0 26182.0 1330.0 36106.0 3322.0 9535.0 g 0 0 0 0 9268.0 9386.0 16341.0 4759.0 944.0 37846.0 410.0 1004.0 878.0 4123.0 678.0 1160.0 1625.0 9828.0 t 0 0 0 0 10522.0 8617.0 8452.0 2745.0 33982.0 651.0 36374.0 555.0 1140.0 2325.0 36759.0 1654.0 5222.0 10245.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m25_shift2 ; 32 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m25_shift2 (oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25)
; oligos_6nt_mkv3_m25 (oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25); m=0 (reference); ncol1=11; shift=2; ncol=14; --rrCAGATGGcv- ; Alignment reference a 0 0 71 106 0 260 0 265 0 0 0 48 79 0 c 0 0 61 46 264 2 0 0 3 2 2 104 70 0 g 0 0 93 94 0 3 264 0 0 263 262 58 71 0 t 0 0 40 19 1 0 1 0 262 0 1 55 45 0

MA1638.1_shift2 (HAND2)
; oligos_6nt_mkv3_m25 versus MA1638.1 (HAND2); m=1/31; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.841177; --amCAGATGby-- ; cor=; Ncor= a 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 0 c 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 0 g 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 0 t 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0 0

MA1109.1_shift1 (NEUROD1)
; oligos_6nt_mkv3_m25 versus MA1109.1 (NEUROD1); m=2/31; ncol2=13; w=11; offset=-1; strand=D; shift=1; score=0.837455; -graCAGATGGyrs ; cor=; Ncor= a 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 c 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 g 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 t 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0

MA1642.1_shift0 (NEUROG2(var.2))
; oligos_6nt_mkv3_m25 versus MA1642.1 (NEUROG2(var.2)); m=3/31; ncol2=13; w=11; offset=-2; strand=D; shift=0; score=0.834399; rrraCAGATGGyv- ; cor=; Ncor= a 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 9464.0 0 c 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 9034.0 0 g 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 8709.0 0 t 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0 7184.0 0

MA0091.1_rc_shift2 (TAL1::TCF3_rc)
; oligos_6nt_mkv3_m25 versus MA0091.1_rc (TAL1::TCF3_rc); m=4/31; ncol2=12; w=11; offset=0; strand=R; shift=2; score=0.745653; --AmCAKMTGkTck ; cor=; Ncor= a 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 c 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 g 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 t 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0

MA0521.1_shift2 (Tcf12)
; oligos_6nt_mkv3_m25 versus MA0521.1 (Tcf12); m=5/31; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.735126; --rRCAGCTGswg- ; cor=; Ncor= a 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA1618.1_shift1 (Ptf1a)
; oligos_6nt_mkv3_m25 versus MA1618.1 (Ptf1a); m=6/31; ncol2=13; w=11; offset=-1; strand=D; shift=1; score=0.730717; -dmaCAGATGttkh ; cor=; Ncor= a 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 c 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 g 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 t 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0

MA1524.1_rc_shift1 (MSGN1_rc)
; oligos_6nt_mkv3_m25 versus MA1524.1_rc (MSGN1_rc); m=7/31; ncol2=12; w=11; offset=-1; strand=R; shift=1; score=0.722928; -srmCAwwTGGys- ; cor=; Ncor= a 0 1228.0 3104.0 3269.0 0.0 6373.0 2607.0 3950.0 0.0 0.0 726.0 408.0 1488.0 0 c 0 1781.0 1503.0 3104.0 6373.0 17.0 814.0 112.0 374.0 17.0 1613.0 3277.0 1615.0 0 g 0 1976.0 3269.0 1132.0 10.0 287.0 190.0 627.0 0.0 6373.0 6373.0 576.0 2080.0 0 t 0 1388.0 514.0 412.0 0.0 10.0 3766.0 2424.0 6373.0 0.0 663.0 3096.0 1190.0 0

MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)
; oligos_6nt_mkv3_m25 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=8/31; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.699983; --rrCAGCTGbt-- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0

MA0633.1_rc_shift2 (Twist2_rc)
; oligos_6nt_mkv3_m25 versus MA0633.1_rc (Twist2_rc); m=9/31; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.697346; --mACATATGky-- ; cor=; Ncor= a 0 0 365.0 745.0 0.0 1000.0 0.0 783.0 0.0 0.0 69.0 200.0 0 0 c 0 0 272.0 155.0 1000.0 0.0 211.0 0.0 0.0 0.0 69.0 298.0 0 0 g 0 0 181.0 50.0 0.0 0.0 0.0 217.0 0.0 1000.0 580.0 200.0 0 0 t 0 0 181.0 50.0 0.0 0.0 789.0 0.0 1000.0 0.0 282.0 302.0 0 0

MA1123.2_shift0 (TWIST1)
; oligos_6nt_mkv3_m25 versus MA1123.2 (TWIST1); m=10/31; ncol2=13; w=11; offset=-2; strand=D; shift=0; score=0.692527; awwCCAGATGtbt- ; cor=; Ncor= a 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 6823.0 0 c 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 6561.0 0 g 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 6213.0 0 t 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0 7736.0 0

MA0461.2_shift2 (Atoh1)
; oligos_6nt_mkv3_m25 versus MA0461.2 (Atoh1); m=11/31; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.687623; --rmCATATGky-- ; cor=; Ncor= a 0 0 655.0 523.0 42.0 1027.0 17.0 1027.0 22.0 2.0 34.0 128.0 0 0 c 0 0 108.0 334.0 1027.0 20.0 10.0 74.0 4.0 1.0 234.0 494.0 0 0 g 0 0 372.0 149.0 8.0 34.0 136.0 0.0 5.0 1027.0 376.0 126.0 0 0 t 0 0 59.0 21.0 0.0 0.0 1027.0 0.0 1027.0 31.0 384.0 533.0 0 0

MA1568.1_rc_shift1 (TCF21(var.2)_rc)
; oligos_6nt_mkv3_m25 versus MA1568.1_rc (TCF21(var.2)_rc); m=12/31; ncol2=12; w=11; offset=-1; strand=R; shift=1; score=0.685516; -yrmCATATGGtg- ; cor=; Ncor= a 0 105.0 431.0 339.0 18.0 872.0 0.0 872.0 14.0 2.0 28.0 194.0 186.0 0 c 0 315.0 6.0 533.0 872.0 0.0 71.0 67.0 164.0 12.0 205.0 352.0 175.0 0 g 0 150.0 441.0 86.0 0.0 107.0 43.0 54.0 0.0 872.0 872.0 20.0 398.0 0 t 0 301.0 87.0 19.0 4.0 21.0 872.0 0.0 872.0 4.0 89.0 872.0 113.0 0

MA0668.1_rc_shift2 (NEUROD2_rc)
; oligos_6nt_mkv3_m25 versus MA0668.1_rc (NEUROD2_rc); m=13/31; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.681899; --rmCATATGky-- ; cor=; Ncor= a 0 0 685.0 548.0 112.0 1587.0 4.0 1587.0 52.0 0.0 0.0 95.0 0 0 c 0 0 101.0 705.0 1587.0 0.0 38.0 0.0 308.0 95.0 240.0 769.0 0 0 g 0 0 592.0 373.0 0.0 328.0 120.0 156.0 0.0 1587.0 875.0 119.0 0 0 t 0 0 209.0 0.0 0.0 0.0 1587.0 0.0 1587.0 0.0 527.0 604.0 0 0

MA1468.1_rc_shift2 (ATOH7_rc)
; oligos_6nt_mkv3_m25 versus MA1468.1_rc (ATOH7_rc); m=14/31; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.665463; --rmCATATGkT-- ; cor=; Ncor= a 0 0 312.0 291.0 0.0 712.0 0.0 712.0 58.0 0.0 45.0 62.0 0 0 c 0 0 2.0 261.0 712.0 25.0 78.0 59.0 102.0 0.0 154.0 142.0 0 0 g 0 0 400.0 155.0 0.0 25.0 180.0 106.0 0.0 712.0 211.0 97.0 0 0 t 0 0 17.0 5.0 0.0 0.0 712.0 15.0 712.0 0.0 302.0 712.0 0 0

MA1570.1_shift2 (TFAP4(var.2))
; oligos_6nt_mkv3_m25 versus MA1570.1 (TFAP4(var.2)); m=15/31; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.664753; --ahCAyrTGkt-- ; cor=; Ncor= a 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 0 c 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 0 g 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 0 t 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0 0

MA0820.1_rc_shift2 (FIGLA_rc)
; oligos_6nt_mkv3_m25 versus MA0820.1_rc (FIGLA_rc); m=16/31; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.661516; --wmCAGGTGkw-- ; cor=; Ncor= a 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0

MA1108.2_shift2 (MXI1)
; oligos_6nt_mkv3_m25 versus MA1108.2 (MXI1); m=17/31; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.660533; --rvCACATGkc-- ; cor=; Ncor= a 0 0 5786.0 6184.0 109.0 21870.0 10.0 20506.0 0.0 527.0 2833.0 4945.0 0 0 c 0 0 4724.0 5841.0 21382.0 1.0 21552.0 0.0 507.0 114.0 5329.0 6343.0 0 0 g 0 0 6326.0 6078.0 97.0 170.0 18.0 1542.0 0.0 21232.0 7228.0 5394.0 0 0 t 0 0 5212.0 3945.0 460.0 7.0 468.0 0.0 21541.0 175.0 6658.0 5366.0 0 0

MA1100.2_shift2 (ASCL1)
; oligos_6nt_mkv3_m25 versus MA1100.2 (ASCL1); m=18/31; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.651989; --rrCAGCTGcy-- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA1635.1_shift2 (BHLHE22(var.2))
; oligos_6nt_mkv3_m25 versus MA1635.1 (BHLHE22(var.2)); m=19/31; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.650684; --csCAGCTGsg-- ; cor=; Ncor= a 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA0827.1_rc_shift2 (OLIG3_rc)
; oligos_6nt_mkv3_m25 versus MA0827.1_rc (OLIG3_rc); m=20/31; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.650128; --rvCATATGkT-- ; cor=; Ncor= a 0 0 1915.0 1010.0 275.0 1915.0 0.0 1915.0 22.0 3.0 6.0 132.0 0 0 c 0 0 176.0 904.0 1915.0 2.0 11.0 72.0 99.0 0.0 208.0 427.0 0 0 g 0 0 964.0 662.0 4.0 224.0 103.0 26.0 10.0 1915.0 1115.0 204.0 0 0 t 0 0 265.0 28.0 4.0 56.0 1915.0 0.0 1915.0 222.0 800.0 1915.0 0 0

MA0100.3_rc_shift2 (MYB_rc)
; oligos_6nt_mkv3_m25 versus MA0100.3_rc (MYB_rc); m=21/31; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.647301; --kdCAGTTGvk-- ; cor=; Ncor= a 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 0 c 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 0 g 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 0 t 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0 0

MA0818.1_rc_shift2 (BHLHE22_rc)
; oligos_6nt_mkv3_m25 versus MA0818.1_rc (BHLHE22_rc); m=22/31; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.644857; --rrCATATGkT-- ; cor=; Ncor= a 0 0 520.0 201.0 4.0 520.0 2.0 520.0 8.0 0.0 4.0 21.0 0 0 c 0 0 21.0 123.0 520.0 0.0 2.0 0.0 24.0 0.0 99.0 172.0 0 0 g 0 0 254.0 193.0 2.0 48.0 4.0 2.0 6.0 520.0 229.0 26.0 0 0 t 0 0 36.0 4.0 0.0 11.0 520.0 0.0 520.0 6.0 189.0 520.0 0 0

MA0678.1_rc_shift2 (OLIG2_rc)
; oligos_6nt_mkv3_m25 versus MA0678.1_rc (OLIG2_rc); m=23/31; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.63765; --rmCATATGkT-- ; cor=; Ncor= a 0 0 1609.0 744.0 117.0 1609.0 4.0 1609.0 22.0 0.0 16.0 108.0 0 0 c 0 0 57.0 866.0 1609.0 0.0 18.0 0.0 53.0 4.0 142.0 283.0 0 0 g 0 0 689.0 396.0 3.0 159.0 22.0 0.0 2.0 1609.0 929.0 90.0 0 0 t 0 0 146.0 4.0 10.0 21.0 1609.0 0.0 1609.0 74.0 680.0 1609.0 0 0

MA0623.2_shift2 (NEUROG1)
; oligos_6nt_mkv3_m25 versus MA0623.2 (NEUROG1); m=24/31; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.636787; --raCATATGky-- ; cor=; Ncor= a 0 0 1658.0 1898.0 0.0 3518.0 4.0 3518.0 0.0 0.0 23.0 68.0 0 0 c 0 0 118.0 876.0 3518.0 0.0 114.0 0.0 86.0 0.0 655.0 1844.0 0 0 g 0 0 1860.0 729.0 8.0 63.0 0.0 80.0 0.0 3518.0 907.0 187.0 0 0 t 0 0 33.0 14.0 0.0 0.0 3518.0 0.0 3518.0 0.0 1933.0 1673.0 0 0

MA0698.1_shift0 (ZBTB18)
; oligos_6nt_mkv3_m25 versus MA0698.1 (ZBTB18); m=25/31; ncol2=13; w=11; offset=-2; strand=D; shift=0; score=0.613061; hatCCAGATGTkb- ; cor=; Ncor= a 3561.0 7064.0 1177.0 3618.0 21.0 13670.0 3.0 13670.0 14.0 3.0 48.0 210.0 1725.0 0 c 4188.0 753.0 1937.0 13670.0 13670.0 5.0 245.0 1048.0 15.0 1.0 314.0 177.0 4042.0 0 g 2499.0 2535.0 5212.0 1899.0 3.0 33.0 13670.0 278.0 94.0 13670.0 36.0 5530.0 3876.0 0 t 3423.0 3319.0 13670.0 60.0 8.0 206.0 6.0 297.0 13670.0 1.0 13670.0 8140.0 4027.0 0

MA0607.1_rc_shift3 (Bhlha15_rc)
; oligos_6nt_mkv3_m25 versus MA0607.1_rc (Bhlha15_rc); m=26/31; ncol2=8; w=8; offset=1; strand=R; shift=3; score=0.600636; ---aCATATGs--- ; cor=; Ncor= a 0 0 0 614.0 0.0 999.0 0.0 799.0 0.0 0.0 1.0 0 0 0 c 0 0 0 154.0 999.0 0.0 0.0 200.0 0.0 0.0 286.0 0 0 0 g 0 0 0 231.0 0.0 0.0 200.0 0.0 0.0 999.0 571.0 0 0 0 t 0 0 0 1.0 0.0 0.0 799.0 0.0 999.0 0.0 143.0 0 0 0

MA0103.3_rc_shift1 (ZEB1_rc)
; oligos_6nt_mkv3_m25 versus MA0103.3_rc (ZEB1_rc); m=27/31; ncol2=11; w=10; offset=-1; strand=R; shift=1; score=0.591097; -sssCAGGTGss-- ; cor=; Ncor= a 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 0 c 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 0 g 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 0 t 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0 0

MA1485.1_rc_shift0 (FERD3L_rc)
; oligos_6nt_mkv3_m25 versus MA1485.1_rc (FERD3L_rc); m=28/31; ncol2=14; w=11; offset=-2; strand=R; shift=0; score=0.569324; GTrACAGCTGkyrC ; cor=; Ncor= a 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0

MA0095.2_shift3 (YY1)
; oligos_6nt_mkv3_m25 versus MA0095.2 (YY1); m=29/31; ncol2=12; w=10; offset=1; strand=D; shift=3; score=0.546367; ---cAArATGGCkg ; cor=; Ncor= a 0 0 0 1126.0 6975.0 6741.0 2506.0 7171.0 0.0 11.0 13.0 812.0 867.0 899.0 c 0 0 0 4583.0 0.0 99.0 1117.0 0.0 12.0 0.0 0.0 5637.0 1681.0 875.0 g 0 0 0 801.0 181.0 268.0 3282.0 0.0 0.0 7160.0 7158.0 38.0 2765.0 4655.0 t 0 0 0 661.0 15.0 63.0 266.0 0.0 7159.0 0.0 0.0 684.0 1858.0 742.0

MA0092.1_rc_shift0 (Hand1::Tcf3_rc)
; oligos_6nt_mkv3_m25 versus MA0092.1_rc (Hand1::Tcf3_rc); m=30/31; ncol2=10; w=8; offset=-2; strand=R; shift=0; score=0.448466; awkCCAGAys---- ; cor=; Ncor= a 16.0 10.0 5.0 1.0 0.0 29.0 1.0 24.0 4.0 7.0 0 0 0 0 c 4.0 3.0 1.0 25.0 29.0 0.0 0.0 1.0 15.0 10.0 0 0 0 0 g 4.0 0.0 14.0 3.0 0.0 0.0 28.0 2.0 0.0 8.0 0 0 0 0 t 5.0 16.0 9.0 0.0 0.0 0.0 0.0 2.0 10.0 4.0 0 0 0 0

MA0748.2_shift5 (YY2)
; oligos_6nt_mkv3_m25 versus MA0748.2 (YY2); m=31/31; ncol2=11; w=8; offset=3; strand=D; shift=5; score=0.429285; -----msATGGCGG ; cor=; Ncor= a 0 0 0 0 0 1973.0 1280.0 5263.0 58.0 48.0 126.0 109.0 64.0 411.0 c 0 0 0 0 0 1591.0 1607.0 46.0 273.0 120.0 101.0 5384.0 330.0 516.0 g 0 0 0 0 0 1068.0 2143.0 359.0 125.0 5509.0 5376.0 25.0 5231.0 4474.0 t 0 0 0 0 0 1072.0 674.0 36.0 5248.0 27.0 101.0 186.0 79.0 303.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m18_shift6 ; 45 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m18_shift6 (oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18)
; oligos_7nt_mkv4_m18 (oligos_7nt_mkv4_m18oligos_7nt_mkv4_m18); m=0 (reference); ncol1=12; shift=6; ncol=20; ------gvTGACCTCAsc-- ; Alignment reference a 0 0 0 0 0 0 45 57 22 9 218 2 10 2 6 206 30 44 0 0 c 0 0 0 0 0 0 50 58 4 4 0 212 174 2 204 2 58 84 0 0 g 0 0 0 0 0 0 81 84 22 202 1 2 30 4 3 12 80 50 0 0 t 0 0 0 0 0 0 44 21 172 5 1 4 6 212 7 0 52 42 0 0

MA0605.2_shift6 (ATF3)
; oligos_7nt_mkv4_m18 versus MA0605.2 (ATF3); m=1/44; ncol2=12; w=12; offset=0; strand=D; shift=6; score=0.840409; ------grTGACGTCAyc-- ; cor=; Ncor= a 0 0 0 0 0 0 8505.0 24741.0 0.0 0.0 40546.0 0.0 891.0 0.0 1520.0 40546.0 0.0 6919.0 0 0 c 0 0 0 0 0 0 8220.0 1354.0 0.0 0.0 0.0 40546.0 0.0 0.0 40546.0 0.0 15737.0 16820.0 0 0 g 0 0 0 0 0 0 16894.0 15805.0 1.0 40546.0 0.0 0.0 40546.0 0.0 0.0 0.0 1094.0 8242.0 0 0 t 0 0 0 0 0 0 6926.0 0.0 40546.0 1366.0 0.0 556.0 0.0 40546.0 0.0 0.0 24808.0 8564.0 0 0

MA1632.1_rc_shift6 (ATF2_rc)
; oligos_7nt_mkv4_m18 versus MA1632.1_rc (ATF2_rc); m=2/44; ncol2=13; w=12; offset=0; strand=R; shift=6; score=0.833109; ------raTGACvTCATyw- ; cor=; Ncor= a 0 0 0 0 0 0 18336.0 36321.0 509.0 909.0 57832.0 261.0 18166.0 975.0 2498.0 57651.0 1438.0 11021.0 16567.0 0 c 0 0 0 0 0 0 11553.0 5971.0 768.0 649.0 283.0 56882.0 23207.0 262.0 55318.0 328.0 6229.0 18924.0 11910.0 0 g 0 0 0 0 0 0 15785.0 14153.0 218.0 53464.0 316.0 886.0 16970.0 396.0 408.0 899.0 3145.0 10292.0 10795.0 0 t 0 0 0 0 0 0 13720.0 2949.0 57899.0 4372.0 963.0 1365.0 1051.0 57761.0 1170.0 516.0 48582.0 19157.0 20122.0 0

MA1475.1_shift6 (CREB3L4(var.2))
; oligos_7nt_mkv4_m18 versus MA1475.1 (CREB3L4(var.2)); m=3/44; ncol2=12; w=12; offset=0; strand=D; shift=6; score=0.827147; ------grTGACGTCAyc-- ; cor=; Ncor= a 0 0 0 0 0 0 229.0 504.0 0.0 35.0 1293.0 0.0 81.0 16.0 176.0 1293.0 116.0 234.0 0 0 c 0 0 0 0 0 0 224.0 221.0 138.0 265.0 27.0 1293.0 3.0 100.0 1293.0 35.0 748.0 582.0 0 0 g 0 0 0 0 0 0 570.0 790.0 48.0 1293.0 83.0 6.0 1293.0 36.0 227.0 153.0 282.0 265.0 0 0 t 0 0 0 0 0 0 270.0 75.0 1293.0 258.0 39.0 43.0 0.0 1293.0 59.0 40.0 546.0 212.0 0 0

MA1139.1_rc_shift6 (FOSL2::JUNB(var.2)_rc)
; oligos_7nt_mkv4_m18 versus MA1139.1_rc (FOSL2::JUNB(var.2)_rc); m=4/44; ncol2=12; w=12; offset=0; strand=R; shift=6; score=0.818353; ------krTGACGTCAym-- ; cor=; Ncor= a 0 0 0 0 0 0 228.0 639.0 8.0 13.0 972.0 10.0 74.0 10.0 187.0 969.0 29.0 263.0 0 0 c 0 0 0 0 0 0 151.0 67.0 19.0 23.0 6.0 900.0 17.0 13.0 780.0 6.0 268.0 359.0 0 0 g 0 0 0 0 0 0 358.0 266.0 5.0 778.0 12.0 16.0 899.0 5.0 21.0 17.0 65.0 150.0 0 0 t 0 0 0 0 0 0 263.0 28.0 968.0 186.0 10.0 74.0 10.0 972.0 12.0 8.0 638.0 227.0 0 0

MA0656.1_rc_shift6 (JDP2(var.2)_rc)
; oligos_7nt_mkv4_m18 versus MA0656.1_rc (JDP2(var.2)_rc); m=5/44; ncol2=12; w=12; offset=0; strand=R; shift=6; score=0.817662; ------grTGACGTCATc-- ; cor=; Ncor= a 0 0 0 0 0 0 3778.0 12283.0 0.0 1.0 24403.0 2.0 338.0 6.0 1939.0 24403.0 17.0 3623.0 0 0 c 0 0 0 0 0 0 4124.0 835.0 9.0 4.0 7.0 24403.0 6.0 6.0 24403.0 3.0 1403.0 11036.0 0 0 g 0 0 0 0 0 0 12117.0 12119.0 10.0 24403.0 24.0 5.0 24403.0 7.0 0.0 9.0 1319.0 5483.0 0 0 t 0 0 0 0 0 0 4383.0 47.0 24403.0 1777.0 15.0 587.0 5.0 24403.0 11.0 3.0 24403.0 4260.0 0 0

MA1140.2_rc_shift6 (JUNB(var.2)_rc)
; oligos_7nt_mkv4_m18 versus MA1140.2_rc (JUNB(var.2)_rc); m=6/44; ncol2=12; w=12; offset=0; strand=R; shift=6; score=0.807561; ------grTGACGTCATc-- ; cor=; Ncor= a 0 0 0 0 0 0 35.0 191.0 1.0 1.0 305.0 0.0 2.0 0.0 13.0 305.0 6.0 47.0 0 0 c 0 0 0 0 0 0 43.0 10.0 1.0 3.0 1.0 305.0 0.0 1.0 305.0 4.0 15.0 162.0 0 0 g 0 0 0 0 0 0 187.0 114.0 2.0 305.0 3.0 1.0 305.0 1.0 0.0 1.0 7.0 46.0 0 0 t 0 0 0 0 0 0 40.0 0.0 305.0 17.0 1.0 0.0 0.0 305.0 0.0 1.0 305.0 50.0 0 0

MA1133.1_shift6 (JUN::JUNB(var.2))
; oligos_7nt_mkv4_m18 versus MA1133.1 (JUN::JUNB(var.2)); m=7/44; ncol2=12; w=12; offset=0; strand=D; shift=6; score=0.806548; ------krTGACGTCATb-- ; cor=; Ncor= a 0 0 0 0 0 0 54.0 376.0 58.0 51.0 787.0 23.0 55.0 30.0 91.0 919.0 33.0 212.0 0 0 c 0 0 0 0 0 0 132.0 108.0 43.0 28.0 22.0 862.0 36.0 27.0 834.0 19.0 125.0 254.0 0 0 g 0 0 0 0 0 0 358.0 486.0 25.0 703.0 63.0 47.0 867.0 40.0 35.0 35.0 130.0 255.0 0 0 t 0 0 0 0 0 0 457.0 30.0 875.0 218.0 129.0 68.0 42.0 903.0 40.0 26.0 712.0 278.0 0 0

MA0018.4_rc_shift6 (CREB1_rc)
; oligos_7nt_mkv4_m18 versus MA0018.4_rc (CREB1_rc); m=8/44; ncol2=13; w=12; offset=0; strand=R; shift=6; score=0.806412; ------drTGACATCAyhw- ; cor=; Ncor= a 0 0 0 0 0 0 21630.0 32873.0 1485.0 1852.0 68217.0 1831.0 56875.0 2279.0 2963.0 75554.0 10149.0 22306.0 24750.0 0 c 0 0 0 0 0 0 13550.0 14802.0 1222.0 2177.0 1207.0 74401.0 6339.0 2012.0 72555.0 1109.0 27796.0 21104.0 15570.0 0 g 0 0 0 0 0 0 21876.0 21582.0 1018.0 71982.0 1231.0 1895.0 14144.0 1748.0 2298.0 970.0 13032.0 15046.0 17829.0 0 t 0 0 0 0 0 0 22488.0 10287.0 75819.0 3533.0 8889.0 1417.0 2186.0 73505.0 1728.0 1911.0 28567.0 21088.0 21395.0 0

MA0840.1_rc_shift6 (Creb5_rc)
; oligos_7nt_mkv4_m18 versus MA0840.1_rc (Creb5_rc); m=9/44; ncol2=12; w=12; offset=0; strand=R; shift=6; score=0.796422; ------rrTGACGTCATy-- ; cor=; Ncor= a 0 0 0 0 0 0 1126.0 1843.0 2.0 4.0 3704.0 0.0 57.0 10.0 918.0 3704.0 40.0 695.0 0 0 c 0 0 0 0 0 0 372.0 77.0 0.0 0.0 0.0 3704.0 0.0 1.0 3704.0 0.0 256.0 1066.0 0 0 g 0 0 0 0 0 0 1466.0 1861.0 0.0 3704.0 6.0 0.0 3704.0 0.0 6.0 16.0 227.0 740.0 0 0 t 0 0 0 0 0 0 740.0 25.0 3704.0 917.0 18.0 151.0 0.0 3704.0 13.0 6.0 3704.0 1202.0 0 0

MA1131.1_shift6 (FOSL2::JUN(var.2))
; oligos_7nt_mkv4_m18 versus MA1131.1 (FOSL2::JUN(var.2)); m=10/44; ncol2=11; w=11; offset=0; strand=D; shift=6; score=0.755311; ------grTGACGTmAt--- ; cor=; Ncor= a 0 0 0 0 0 0 222.0 633.0 6.0 7.0 963.0 11.0 92.0 14.0 351.0 961.0 38.0 0 0 0 c 0 0 0 0 0 0 94.0 30.0 8.0 14.0 6.0 906.0 45.0 70.0 625.0 10.0 218.0 0 0 0 g 0 0 0 0 0 0 459.0 323.0 8.0 917.0 9.0 22.0 845.0 9.0 16.0 13.0 166.0 0 0 0 t 0 0 0 0 0 0 224.0 15.0 978.0 62.0 23.0 61.0 17.0 908.0 8.0 15.0 578.0 0 0 0

MA1127.1_rc_shift7 (FOSB::JUN_rc)
; oligos_7nt_mkv4_m18 versus MA1127.1_rc (FOSB::JUN_rc); m=11/44; ncol2=11; w=11; offset=1; strand=R; shift=7; score=0.748381; -------rTGACGTCAtc-- ; cor=; Ncor= a 0 0 0 0 0 0 0 593.0 21.0 36.0 904.0 14.0 42.0 20.0 100.0 965.0 48.0 162.0 0 0 c 0 0 0 0 0 0 0 53.0 14.0 20.0 14.0 897.0 25.0 17.0 872.0 12.0 216.0 575.0 0 0 g 0 0 0 0 0 0 0 261.0 16.0 697.0 57.0 14.0 886.0 8.0 10.0 10.0 87.0 70.0 0 0 t 0 0 0 0 0 0 0 92.0 949.0 247.0 25.0 75.0 48.0 954.0 17.0 12.0 649.0 193.0 0 0

MA0834.1_rc_shift5 (ATF7_rc)
; oligos_7nt_mkv4_m18 versus MA0834.1_rc (ATF7_rc); m=12/44; ncol2=14; w=12; offset=-1; strand=R; shift=5; score=0.690959; -----bkRTGACGTCATyg- ; cor=; Ncor= a 0 0 0 0 0 2839.0 3456.0 19329.0 11.0 22.0 19329.0 4.0 68.0 12.0 1759.0 19329.0 41.0 4461.0 4641.0 0 c 0 0 0 0 0 5892.0 2129.0 440.0 49.0 51.0 77.0 19329.0 33.0 58.0 19329.0 43.0 3772.0 7299.0 4161.0 0 g 0 0 0 0 0 4920.0 8116.0 7305.0 2.0 19329.0 16.0 9.0 19329.0 8.0 7.0 4.0 368.0 2440.0 6606.0 0 t 0 0 0 0 0 5680.0 5628.0 82.0 19329.0 2698.0 25.0 79.0 20.0 19329.0 26.0 11.0 19329.0 5130.0 3922.0 0

MA1111.1_rc_shift6 (NR2F2_rc)
; oligos_7nt_mkv4_m18 versus MA1111.1_rc (NR2F2_rc); m=13/44; ncol2=11; w=11; offset=0; strand=R; shift=6; score=0.677212; ------ytTGACCTTtr--- ; cor=; Ncor= a 0 0 0 0 0 0 401.0 524.0 34.0 170.0 2135.0 27.0 43.0 23.0 206.0 401.0 606.0 0 0 0 c 0 0 0 0 0 0 572.0 544.0 43.0 26.0 30.0 2132.0 2108.0 82.0 173.0 320.0 418.0 0 0 0 g 0 0 0 0 0 0 384.0 503.0 16.0 1978.0 22.0 12.0 16.0 15.0 37.0 456.0 692.0 0 0 0 t 0 0 0 0 0 0 847.0 633.0 2111.0 30.0 17.0 33.0 37.0 2084.0 1788.0 1027.0 488.0 0 0 0

MA0492.1_rc_shift6 (JUND(var.2)_rc)
; oligos_7nt_mkv4_m18 versus MA0492.1_rc (JUND(var.2)_rc); m=14/44; ncol2=15; w=12; offset=0; strand=R; shift=6; score=0.673681; ------kATKACrTCATywy ; cor=; Ncor= a 0 0 0 0 0 0 6184.0 25487.0 0.0 0.0 29696.0 0.0 14938.0 0.0 120.0 33631.0 0.0 1802.0 9424.0 8246.0 c 0 0 0 0 0 0 6351.0 2407.0 0.0 141.0 0.0 26683.0 8287.0 0.0 33511.0 0.0 8115.0 15761.0 8110.0 8721.0 g 0 0 0 0 0 0 10841.0 5470.0 0.0 24697.0 3935.0 1824.0 10406.0 0.0 0.0 0.0 169.0 2452.0 4836.0 3228.0 t 0 0 0 0 0 0 10255.0 267.0 33631.0 8793.0 0.0 5124.0 0.0 33631.0 0.0 0.0 25347.0 13616.0 11261.0 13436.0

MA1136.1_rc_shift7 (FOSB::JUNB(var.2)_rc)
; oligos_7nt_mkv4_m18 versus MA1136.1_rc (FOSB::JUNB(var.2)_rc); m=15/44; ncol2=10; w=10; offset=1; strand=R; shift=7; score=0.672812; -------rTGACGTCAy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 664.0 31.0 15.0 836.0 20.0 101.0 28.0 242.0 917.0 12.0 0 0 0 c 0 0 0 0 0 0 0 65.0 30.0 36.0 28.0 893.0 27.0 60.0 700.0 16.0 368.0 0 0 0 g 0 0 0 0 0 0 0 260.0 16.0 776.0 80.0 35.0 842.0 44.0 46.0 36.0 59.0 0 0 0 t 0 0 0 0 0 0 0 11.0 923.0 173.0 56.0 52.0 30.0 869.0 13.0 30.0 561.0 0 0 0

MA0684.2_shift7 (RUNX3)
; oligos_7nt_mkv4_m18 versus MA0684.2 (RUNX3); m=16/44; ncol2=12; w=11; offset=1; strand=D; shift=7; score=0.667016; -------awAACCTCAawh- ; cor=; Ncor= a 0 0 0 0 0 0 0 7768.0 9558.0 19136.0 26243.0 427.0 495.0 6357.0 611.0 26121.0 16137.0 8778.0 6879.0 0 c 0 0 0 0 0 0 0 6083.0 5007.0 2662.0 315.0 26293.0 26208.0 419.0 26015.0 414.0 3077.0 5994.0 6900.0 0 g 0 0 0 0 0 0 0 6685.0 3547.0 3500.0 431.0 198.0 385.0 1911.0 390.0 338.0 4696.0 5642.0 6372.0 0 t 0 0 0 0 0 0 0 6841.0 9265.0 2079.0 388.0 459.0 289.0 18690.0 361.0 504.0 3467.0 6963.0 7226.0 0

MA1145.1_shift5 (FOSL2::JUND(var.2))
; oligos_7nt_mkv4_m18 versus MA1145.1 (FOSL2::JUND(var.2)); m=17/44; ncol2=15; w=12; offset=-1; strand=D; shift=5; score=0.666287; -----kkrTkACGTCAycgc ; cor=; Ncor= a 0 0 0 0 0 198.0 219.0 559.0 26.0 7.0 943.0 12.0 135.0 28.0 33.0 972.0 23.0 217.0 162.0 248.0 c 0 0 0 0 0 177.0 189.0 45.0 27.0 46.0 6.0 911.0 15.0 12.0 942.0 6.0 345.0 434.0 222.0 288.0 g 0 0 0 0 0 286.0 340.0 340.0 10.0 678.0 31.0 35.0 823.0 10.0 15.0 11.0 55.0 104.0 416.0 241.0 t 0 0 0 0 0 339.0 252.0 57.0 937.0 268.0 20.0 41.0 28.0 950.0 11.0 11.0 577.0 245.0 200.0 223.0

MA1129.1_rc_shift7 (FOSL1::JUN(var.2)_rc)
; oligos_7nt_mkv4_m18 versus MA1129.1_rc (FOSL1::JUN(var.2)_rc); m=18/44; ncol2=10; w=10; offset=1; strand=R; shift=7; score=0.657931; -------rTgACGTcAy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 641.0 30.0 35.0 827.0 24.0 95.0 43.0 240.0 919.0 26.0 0 0 0 c 0 0 0 0 0 0 0 71.0 31.0 58.0 27.0 847.0 38.0 106.0 672.0 24.0 266.0 0 0 0 g 0 0 0 0 0 0 0 264.0 22.0 670.0 105.0 36.0 845.0 26.0 56.0 30.0 69.0 0 0 0 t 0 0 0 0 0 0 0 24.0 917.0 238.0 41.0 93.0 22.0 825.0 33.0 28.0 639.0 0 0 0

MA1150.1_rc_shift7 (RORB_rc)
; oligos_7nt_mkv4_m18 versus MA1150.1_rc (RORB_rc); m=19/44; ncol2=11; w=11; offset=1; strand=R; shift=7; score=0.653297; -------rTGACCyaawT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 324.0 26.0 155.0 776.0 27.0 52.0 26.0 547.0 403.0 425.0 172.0 0 0 c 0 0 0 0 0 0 0 145.0 63.0 17.0 50.0 928.0 907.0 358.0 235.0 201.0 24.0 29.0 0 0 g 0 0 0 0 0 0 0 326.0 15.0 781.0 146.0 13.0 25.0 14.0 165.0 162.0 26.0 14.0 0 0 t 0 0 0 0 0 0 0 205.0 896.0 47.0 28.0 32.0 16.0 602.0 53.0 233.0 526.0 785.0 0 0

MA0488.1_rc_shift7 (JUN_rc)
; oligos_7nt_mkv4_m18 versus MA0488.1_rc (JUN_rc); m=20/44; ncol2=13; w=11; offset=1; strand=R; shift=7; score=0.648476; -------ATkACaTCATywt ; cor=; Ncor= a 0 0 0 0 0 0 0 16045.0 0.0 0.0 16499.0 0.0 13018.0 1.0 119.0 20968.0 0.0 2887.0 5929.0 5141.0 c 0 0 0 0 0 0 0 1016.0 0.0 0.0 0.0 20360.0 4512.0 0.0 20849.0 0.0 3713.0 9682.0 4985.0 4894.0 g 0 0 0 0 0 0 0 3704.0 0.0 14064.0 3531.0 608.0 3438.0 0.0 0.0 0.0 729.0 1903.0 2938.0 2792.0 t 0 0 0 0 0 0 0 203.0 20968.0 6904.0 938.0 0.0 0.0 20967.0 0.0 0.0 16526.0 6496.0 7116.0 8141.0

MA0609.2_shift4 (CREM)
; oligos_7nt_mkv4_m18 versus MA0609.2 (CREM); m=21/44; ncol2=16; w=12; offset=-2; strand=D; shift=4; score=0.632648; ----gcrgTGACGTCAcygc ; cor=; Ncor= a 0 0 0 0 3865.0 3966.0 5881.0 2936.0 559.0 434.0 15694.0 517.0 1582.0 400.0 672.0 15228.0 789.0 3757.0 3582.0 3801.0 c 0 0 0 0 4230.0 5521.0 2908.0 2159.0 730.0 1038.0 313.0 14031.0 901.0 622.0 14883.0 508.0 11146.0 4473.0 3957.0 5132.0 g 0 0 0 0 5132.0 3956.0 4474.0 11144.0 506.0 14883.0 619.0 897.0 14026.0 314.0 1039.0 730.0 2156.0 2910.0 5523.0 4230.0 t 0 0 0 0 3800.0 3584.0 3764.0 788.0 15232.0 672.0 401.0 1582.0 518.0 15691.0 433.0 561.0 2936.0 5887.0 3965.0 3864.0

MA1126.1_shift6 (FOS::JUN(var.2))
; oligos_7nt_mkv4_m18 versus MA1126.1 (FOS::JUN(var.2)); m=22/44; ncol2=16; w=12; offset=0; strand=D; shift=6; score= 0.6213; ------drTgACGTCAtmmk ; cor=; Ncor= a 0 0 0 0 0 0 266.0 556.0 47.0 42.0 748.0 80.0 131.0 40.0 53.0 907.0 30.0 299.0 322.0 190.0 c 0 0 0 0 0 0 63.0 45.0 74.0 112.0 31.0 838.0 114.0 23.0 846.0 24.0 234.0 322.0 313.0 178.0 g 0 0 0 0 0 0 419.0 369.0 62.0 655.0 135.0 41.0 722.0 32.0 44.0 36.0 60.0 160.0 161.0 261.0 t 0 0 0 0 0 0 252.0 30.0 816.0 191.0 86.0 41.0 34.0 905.0 57.0 33.0 676.0 220.0 204.0 371.0

MA1143.1_shift7 (FOSL1::JUND(var.2))
; oligos_7nt_mkv4_m18 versus MA1143.1 (FOSL1::JUND(var.2)); m=23/44; ncol2=10; w=10; offset=1; strand=D; shift=7; score=0.61881; -------rTGACgymay--- ; cor=; Ncor= a 0 0 0 0 0 0 0 561.0 36.0 39.0 870.0 32.0 116.0 117.0 546.0 645.0 123.0 0 0 0 c 0 0 0 0 0 0 0 75.0 50.0 101.0 45.0 835.0 59.0 262.0 330.0 66.0 401.0 0 0 0 g 0 0 0 0 0 0 0 324.0 44.0 777.0 41.0 64.0 649.0 39.0 83.0 100.0 82.0 0 0 0 t 0 0 0 0 0 0 0 40.0 870.0 82.0 44.0 68.0 176.0 582.0 41.0 188.0 394.0 0 0 0

MA0017.2_rc_shift4 (NR2F1_rc)
; oligos_7nt_mkv4_m18 versus MA0017.2_rc (NR2F1_rc); m=24/44; ncol2=13; w=11; offset=-2; strand=R; shift=4; score=0.616008; ----CyykTGACCYytg--- ; cor=; Ncor= a 0 0 0 0 3466.0 2427.0 1469.0 2270.0 0.0 0.0 12059.0 0.0 0.0 0.0 469.0 1948.0 3980.0 0 0 0 c 0 0 0 0 36863.0 3886.0 4395.0 1618.0 91.0 0.0 0.0 12059.0 12059.0 3791.0 4869.0 1153.0 3276.0 0 0 0 g 0 0 0 0 2912.0 2470.0 2966.0 3055.0 0.0 12059.0 0.0 0.0 30.0 0.0 387.0 1692.0 11446.0 0 0 0 t 0 0 0 0 5681.0 3276.0 3229.0 5116.0 12059.0 0.0 0.0 0.0 0.0 8496.0 6333.0 7266.0 4802.0 0 0 0

MA1535.1_rc_shift7 (NR2C1_rc)
; oligos_7nt_mkv4_m18 versus MA1535.1_rc (NR2C1_rc); m=25/44; ncol2=9; w=9; offset=1; strand=R; shift=7; score=0.615301; -------rTGACCyyk---- ; cor=; Ncor= a 0 0 0 0 0 0 0 2499.0 0.0 0.0 9622.0 0.0 297.0 55.0 1316.0 2225.0 0 0 0 0 c 0 0 0 0 0 0 0 2039.0 1716.0 321.0 271.0 9622.0 9622.0 4756.0 5587.0 1997.0 0 0 0 0 g 0 0 0 0 0 0 0 2786.0 0.0 9622.0 0.0 0.0 0.0 227.0 1225.0 2848.0 0 0 0 0 t 0 0 0 0 0 0 0 2298.0 9622.0 0.0 0.0 0.0 0.0 4866.0 4035.0 2552.0 0 0 0 0

MA0071.1_rc_shift8 (RORA_rc)
; oligos_7nt_mkv4_m18 versus MA0071.1_rc (RORA_rc); m=26/44; ncol2=10; w=10; offset=2; strand=R; shift=8; score=0.60882; --------TGACCTwgww-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 0.0 25.0 0.0 0.0 0.0 7.0 3.0 15.0 7.0 0 0 c 0 0 0 0 0 0 0 0 0.0 0.0 0.0 25.0 25.0 4.0 5.0 4.0 0.0 2.0 0 0 g 0 0 0 0 0 0 0 0 0.0 25.0 0.0 0.0 0.0 0.0 2.0 12.0 1.0 1.0 0 0 t 0 0 0 0 0 0 0 0 25.0 0.0 0.0 0.0 0.0 21.0 11.0 6.0 9.0 15.0 0 0

MA1536.1_rc_shift7 (NR2C2(var.2)_rc)
; oligos_7nt_mkv4_m18 versus MA1536.1_rc (NR2C2(var.2)_rc); m=27/44; ncol2=8; w=8; offset=1; strand=R; shift=7; score=0.568717; -------dYGACCyy----- ; cor=; Ncor= a 0 0 0 0 0 0 0 5122.0 0.0 4406.0 18628.0 4790.0 1341.0 0.0 2861.0 0 0 0 0 0 c 0 0 0 0 0 0 0 3684.0 6639.0 1643.0 1588.0 18628.0 18628.0 8395.0 6420.0 0 0 0 0 0 g 0 0 0 0 0 0 0 4757.0 0.0 18628.0 0.0 0.0 236.0 719.0 3111.0 0 0 0 0 0 t 0 0 0 0 0 0 0 5065.0 18628.0 0.0 0.0 0.0 0.0 10232.0 6236.0 0 0 0 0 0

MA0160.1_rc_shift7 (NR4A2_rc)
; oligos_7nt_mkv4_m18 versus MA0160.1_rc (NR4A2_rc); m=28/44; ncol2=8; w=8; offset=1; strand=R; shift=7; score=0.558162; -------gTGACCTt----- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 0.0 1.0 10.0 0.0 1.0 0.0 1.0 0 0 0 0 0 c 0 0 0 0 0 0 0 2.0 0.0 0.0 0.0 11.0 13.0 1.0 3.0 0 0 0 0 0 g 0 0 0 0 0 0 0 8.0 0.0 13.0 2.0 0.0 0.0 0.0 1.0 0 0 0 0 0 t 0 0 0 0 0 0 0 3.0 14.0 0.0 2.0 3.0 0.0 13.0 8.0 0 0 0 0 0

MA1576.1_shift7 (THRB(var.3))
; oligos_7nt_mkv4_m18 versus MA1576.1 (THRB(var.3)); m=29/44; ncol2=19; w=11; offset=1; strand=D; shift=7; score=0.474811; -------rTGACCTyacrTG ; cor=; Ncor= a 0 0 0 0 0 0 0 119.0 0.0 28.0 389.0 0.0 0.0 13.0 11.0 263.0 42.0 102.0 0.0 0.0 c 0 0 0 0 0 0 0 31.0 8.0 89.0 19.0 389.0 389.0 75.0 134.0 28.0 221.0 86.0 0.0 0.0 g 0 0 0 0 0 0 0 157.0 0.0 389.0 17.0 4.0 59.0 38.0 93.0 89.0 71.0 205.0 6.0 389.0 t 0 0 0 0 0 0 0 82.0 381.0 45.0 71.0 17.0 20.0 389.0 151.0 9.0 54.0 0.0 393.0 3.0

MA1110.1_shift4 (NR1H4)
; oligos_7nt_mkv4_m18 versus MA1110.1 (NR1H4); m=30/44; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.469838; ----tcAATGACCyh----- ; cor=; Ncor= a 0 0 0 0 76.0 68.0 461.0 413.0 3.0 24.0 455.0 26.0 12.0 72.0 135.0 0 0 0 0 0 c 0 0 0 0 83.0 240.0 10.0 28.0 15.0 7.0 22.0 468.0 476.0 135.0 131.0 0 0 0 0 0 g 0 0 0 0 117.0 87.0 12.0 36.0 6.0 462.0 14.0 0.0 6.0 81.0 105.0 0 0 0 0 0 t 0 0 0 0 229.0 110.0 22.0 28.0 481.0 12.0 14.0 11.0 11.0 217.0 134.0 0 0 0 0 0

MA1575.1_shift7 (THRB(var.2))
; oligos_7nt_mkv4_m18 versus MA1575.1 (THRB(var.2)); m=31/44; ncol2=19; w=11; offset=1; strand=D; shift=7; score=0.464949; -------gTGwCCTyrhyrA ; cor=; Ncor= a 0 0 0 0 0 0 0 1010.0 26.0 252.0 4111.0 29.0 1.0 0.0 286.0 2454.0 1060.0 63.0 1469.0 4111.0 c 0 0 0 0 0 0 0 624.0 618.0 642.0 351.0 4111.0 4111.0 1178.0 1512.0 241.0 1033.0 1266.0 904.0 106.0 g 0 0 0 0 0 0 0 1640.0 15.0 4111.0 432.0 2.0 2.0 77.0 872.0 1353.0 939.0 312.0 1488.0 1233.0 t 0 0 0 0 0 0 0 837.0 4111.0 230.0 1787.0 0.0 8.0 4111.0 1441.0 63.0 1079.0 2470.0 251.0 2.0

MA1470.1_rc_shift2 (BACH2(var.2)_rc)
; oligos_7nt_mkv4_m18 versus MA1470.1_rc (BACH2(var.2)_rc); m=32/44; ncol2=20; w=12; offset=-4; strand=R; shift=2; score=0.441708; --aWAksATSACGTCATsvT ; cor=; Ncor= a 0 0 166.0 224.0 236.0 54.0 31.0 259.0 0.0 0.0 323.0 0.0 0.0 0.0 0.0 317.0 3.0 0.0 93.0 46.0 c 0 0 46.0 3.0 1.0 68.0 189.0 0.0 0.0 116.0 0.0 327.0 0.0 1.0 326.0 0.0 0.0 114.0 93.0 27.0 g 0 0 33.0 9.0 25.0 94.0 100.0 63.0 15.0 320.0 0.0 0.0 324.0 0.0 0.0 0.0 0.0 196.0 85.0 11.0 t 0 0 76.0 79.0 65.0 106.0 2.0 0.0 322.0 0.0 0.0 0.0 0.0 323.0 96.0 4.0 324.0 15.0 50.0 250.0

MA1556.1_rc_shift1 (RXRG(var.2)_rc)
; oligos_7nt_mkv4_m18 versus MA1556.1_rc (RXRG(var.2)_rc); m=33/44; ncol2=14; w=9; offset=-5; strand=R; shift=1; score=0.436414; -rrGGTCrTGACCyy----- ; cor=; Ncor= a 0 761.0 1235.0 37.0 64.0 119.0 26.0 1279.0 0.0 16.0 2117.0 99.0 0.0 0.0 79.0 0 0 0 0 0 c 0 226.0 57.0 176.0 63.0 78.0 2117.0 0.0 0.0 1.0 33.0 2117.0 2117.0 853.0 1071.0 0 0 0 0 0 g 0 996.0 882.0 2117.0 2117.0 214.0 55.0 838.0 15.0 2117.0 5.0 31.0 107.0 7.0 164.0 0 0 0 0 0 t 0 135.0 23.0 144.0 144.0 2117.0 64.0 0.0 2117.0 0.0 12.0 7.0 0.0 1264.0 803.0 0 0 0 0 0

MA1538.1_shift0 (NR2F1(var.3))
; oligos_7nt_mkv4_m18 versus MA1538.1 (NR2F1(var.3)); m=34/44; ncol2=15; w=9; offset=-6; strand=D; shift=0; score=0.428406; rrGGTCRtTGACCYy----- ; cor=; Ncor= a 1651.0 2466.0 44.0 75.0 22.0 20.0 2473.0 813.0 0.0 81.0 3515.0 0.0 131.0 57.0 308.0 0 0 0 0 0 c 280.0 75.0 121.0 45.0 87.0 3515.0 58.0 855.0 89.0 15.0 95.0 3515.0 3515.0 949.0 1177.0 0 0 0 0 0 g 1271.0 1049.0 3515.0 3515.0 232.0 58.0 1041.0 858.0 52.0 3515.0 0.0 1.0 75.0 32.0 205.0 0 0 0 0 0 t 312.0 79.0 356.0 67.0 3515.0 171.0 4.0 990.0 3515.0 12.0 0.0 45.0 50.0 2566.0 1825.0 0 0 0 0 0

MA0014.3_shift3 (PAX5)
; oligos_7nt_mkv4_m18 versus MA0014.3 (PAX5); m=35/44; ncol2=12; w=9; offset=-3; strand=D; shift=3; score=0.425217; ---rrGCGTGACCmb----- ; cor=; Ncor= a 0 0 0 540.0 625.0 18.0 18.0 111.0 94.0 16.0 1243.0 32.0 69.0 377.0 263.0 0 0 0 0 0 c 0 0 0 179.0 148.0 151.0 1276.0 35.0 88.0 37.0 39.0 1305.0 1081.0 405.0 403.0 0 0 0 0 0 g 0 0 0 578.0 354.0 1231.0 34.0 1243.0 30.0 1355.0 70.0 57.0 118.0 312.0 359.0 0 0 0 0 0 t 0 0 0 115.0 285.0 12.0 84.0 23.0 1200.0 4.0 60.0 18.0 144.0 318.0 387.0 0 0 0 0 0

MA1539.1_shift0 (NR2F6(var.3))
; oligos_7nt_mkv4_m18 versus MA1539.1 (NR2F6(var.3)); m=36/44; ncol2=15; w=9; offset=-6; strand=D; shift=0; score=0.422835; rAGGTCAbTGACCTy----- ; cor=; Ncor= a 6349.0 8959.0 31.0 38.0 26.0 4.0 9114.0 2492.0 66.0 387.0 11749.0 159.0 82.0 23.0 910.0 0 0 0 0 0 c 727.0 26.0 1.0 12.0 78.0 11749.0 39.0 3333.0 333.0 206.0 255.0 11749.0 11749.0 2844.0 3745.0 0 0 0 0 0 g 3736.0 2789.0 11749.0 11749.0 253.0 216.0 2634.0 2972.0 67.0 11749.0 107.0 0.0 9.0 26.0 718.0 0 0 0 0 0 t 937.0 20.0 124.0 145.0 11749.0 443.0 46.0 2952.0 11749.0 9.0 3.0 36.0 24.0 8905.0 6376.0 0 0 0 0 0

MA1555.1_shift1 (RXRB(var.2))
; oligos_7nt_mkv4_m18 versus MA1555.1 (RXRB(var.2)); m=37/44; ncol2=14; w=9; offset=-5; strand=D; shift=1; score=0.420518; -rrGGTCrTGACCyy----- ; cor=; Ncor= a 0 614.0 934.0 59.0 27.0 35.0 23.0 1207.0 11.0 92.0 1803.0 309.0 58.0 18.0 124.0 0 0 0 0 0 c 0 190.0 59.0 29.0 39.0 85.0 1803.0 15.0 59.0 35.0 53.0 1803.0 1803.0 866.0 868.0 0 0 0 0 0 g 0 851.0 870.0 1803.0 1803.0 157.0 41.0 596.0 0.0 1803.0 41.0 11.0 32.0 14.0 194.0 0 0 0 0 0 t 0 148.0 15.0 103.0 270.0 1803.0 123.0 7.0 1803.0 8.0 14.0 23.0 58.0 937.0 617.0 0 0 0 0 0

MA0067.1_rc_shift5 (Pax2_rc)
; oligos_7nt_mkv4_m18 versus MA0067.1_rc (Pax2_rc); m=38/44; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=0.419867; -----vmrTGAcw------- ; cor=; Ncor= a 0 0 0 0 0 8.0 10.0 11.0 1.0 2.0 26.0 2.0 9.0 0 0 0 0 0 0 0 c 0 0 0 0 0 11.0 19.0 1.0 3.0 1.0 0.0 21.0 5.0 0 0 0 0 0 0 0 g 0 0 0 0 0 11.0 0.0 17.0 1.0 28.0 2.0 1.0 7.0 0 0 0 0 0 0 0 t 0 0 0 0 0 1.0 2.0 2.0 26.0 0.0 3.0 7.0 10.0 0 0 0 0 0 0 0

MA0858.1_rc_shift8 (Rarb(var.2)_rc)
; oligos_7nt_mkv4_m18 versus MA0858.1_rc (Rarb(var.2)_rc); m=39/44; ncol2=17; w=10; offset=2; strand=R; shift=8; score=0.419146; --------TGACCTytrkdT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1.0 4.0 674.0 26.0 0.0 1.0 4.0 158.0 281.0 64.0 204.0 0.0 c 0 0 0 0 0 0 0 0 2.0 0.0 4.0 663.0 682.0 37.0 218.0 41.0 116.0 140.0 15.0 4.0 g 0 0 0 0 0 0 0 0 0.0 765.0 3.0 2.0 1.0 0.0 4.0 34.0 239.0 252.0 210.0 0.0 t 0 0 0 0 0 0 0 0 693.0 0.0 0.0 0.0 1.0 639.0 398.0 438.0 38.0 249.0 293.0 728.0

MA0728.1_rc_shift0 (Nr2f6(var.2)_rc)
; oligos_7nt_mkv4_m18 versus MA0728.1_rc (Nr2f6(var.2)_rc); m=40/44; ncol2=15; w=9; offset=-6; strand=R; shift=0; score=0.414308; TGACCTyTTGACCTy----- ; cor=; Ncor= a 0.0 3.0 369.0 5.0 0.0 0.0 59.0 9.0 1.0 51.0 378.0 0.0 0.0 3.0 0.0 0 0 0 0 0 c 9.0 0.0 0.0 155.0 324.0 0.0 94.0 7.0 0.0 1.0 1.0 183.0 210.0 53.0 172.0 0 0 0 0 0 g 0.0 678.0 0.0 0.0 0.0 0.0 0.0 4.0 30.0 667.0 0.0 0.0 0.0 0.0 16.0 0 0 0 0 0 t 446.0 0.0 2.0 0.0 0.0 258.0 165.0 406.0 494.0 0.0 0.0 1.0 0.0 265.0 100.0 0 0 0 0 0

MA1552.1_shift1 (RARB(var.3))
; oligos_7nt_mkv4_m18 versus MA1552.1 (RARB(var.3)); m=41/44; ncol2=14; w=9; offset=-5; strand=D; shift=1; score=0.413585; -rAGGTCrTGACCTy----- ; cor=; Ncor= a 0 217.0 361.0 3.0 10.0 21.0 5.0 322.0 3.0 16.0 472.0 76.0 12.0 10.0 63.0 0 0 0 0 0 c 0 30.0 45.0 17.0 4.0 64.0 472.0 0.0 5.0 8.0 26.0 472.0 472.0 101.0 128.0 0 0 0 0 0 g 0 169.0 111.0 472.0 472.0 52.0 7.0 150.0 0.0 472.0 18.0 0.0 8.0 45.0 55.0 0 0 0 0 0 t 0 56.0 0.0 31.0 76.0 472.0 16.0 3.0 472.0 4.0 13.0 7.0 16.0 371.0 226.0 0 0 0 0 0

MA1553.1_shift1 (RARG(var.3))
; oligos_7nt_mkv4_m18 versus MA1553.1 (RARG(var.3)); m=42/44; ncol2=14; w=9; offset=-5; strand=D; shift=1; score=0.407322; -rAGGTCATGACCTy----- ; cor=; Ncor= a 0 1689.0 2761.0 111.0 39.0 344.0 28.0 2607.0 33.0 91.0 3442.0 997.0 106.0 54.0 427.0 0 0 0 0 0 c 0 296.0 332.0 37.0 28.0 293.0 3442.0 9.0 50.0 46.0 196.0 3442.0 3442.0 687.0 998.0 0 0 0 0 0 g 0 978.0 681.0 3442.0 3442.0 323.0 58.0 835.0 13.0 3442.0 128.0 5.0 18.0 275.0 282.0 0 0 0 0 0 t 0 479.0 108.0 156.0 1109.0 3442.0 150.0 22.0 3442.0 12.0 200.0 12.0 48.0 2756.0 1736.0 0 0 0 0 0

MA0159.1_rc_shift8 (RARA::RXRA_rc)
; oligos_7nt_mkv4_m18 versus MA0159.1_rc (RARA::RXRA_rc); m=43/44; ncol2=17; w=10; offset=2; strand=R; shift=8; score=0.407288; --------TGAMCTsycsrT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1.0 2.0 17.0 6.0 1.0 0.0 0.0 2.0 3.0 1.0 7.0 0.0 c 0 0 0 0 0 0 0 0 1.0 3.0 3.0 16.0 20.0 3.0 12.0 7.0 11.0 9.0 5.0 1.0 g 0 0 0 0 0 0 0 0 0.0 17.0 1.0 1.0 1.0 3.0 6.0 1.0 4.0 8.0 7.0 0.0 t 0 0 0 0 0 0 0 0 21.0 1.0 2.0 0.0 1.0 17.0 5.0 13.0 5.0 5.0 4.0 22.0

MA0860.1_rc_shift8 (Rarg(var.2)_rc)
; oligos_7nt_mkv4_m18 versus MA0860.1_rc (Rarg(var.2)_rc); m=44/44; ncol2=17; w=10; offset=2; strand=R; shift=8; score=0.406976; --------TGACCTyTskTG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 22.0 4540.0 319.0 1.0 2.0 57.0 479.0 595.0 780.0 0.0 0.0 c 0 0 0 0 0 0 0 0 6.0 2.0 0.0 5040.0 5891.0 838.0 2133.0 558.0 2442.0 386.0 12.0 0.0 g 0 0 0 0 0 0 0 0 5.0 5340.0 2.0 8.0 0.0 32.0 58.0 482.0 1778.0 2677.0 3.0 6256.0 t 0 0 0 0 0 0 0 0 4764.0 7.0 14.0 0.0 0.0 3603.0 2745.0 3248.0 314.0 1394.0 4044.0 2.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m10_shift0 ; 24 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m10_shift0 (oligos_7nt_mkv4_m10oligos_7nt_mkv4_m10)
; oligos_7nt_mkv4_m10 (oligos_7nt_mkv4_m10oligos_7nt_mkv4_m10); m=0 (reference); ncol1=14; shift=0; ncol=17; scTGCACCTGCTsy--- ; Alignment reference a 43 44 42 5 0 271 4 3 3 0 0 1 49 37 0 0 0 c 73 127 12 20 274 3 231 271 1 3 241 20 83 115 0 0 0 g 97 52 24 246 3 1 33 2 0 274 3 2 102 46 0 0 0 t 64 54 199 6 0 2 9 1 273 0 33 254 43 79 0 0 0

MA1631.1_shift1 (ASCL1(var.2))
; oligos_7nt_mkv4_m10 versus MA1631.1 (ASCL1(var.2)); m=1/23; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.836145; -cdgCACCTGCysc--- ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0

MA0830.2_shift1 (TCF4)
; oligos_7nt_mkv4_m10 versus MA0830.2 (TCF4); m=2/23; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.82943; -cggCACCTGccss--- ; cor=; Ncor= a 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 0 c 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 0 g 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 0 t 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0 0

MA0745.2_shift1 (SNAI2)
; oligos_7nt_mkv4_m10 versus MA0745.2 (SNAI2); m=3/23; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.74467; -aygCACCTGTmry--- ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0 0

MA0499.2_shift1 (MYOD1)
; oligos_7nt_mkv4_m10 versus MA0499.2 (MYOD1); m=4/23; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.735107; -cwgCACCTGTymy--- ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0

MA1621.1_shift0 (Rbpjl)
; oligos_7nt_mkv4_m10 versus MA1621.1 (Rbpjl); m=5/23; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.734727; svmaCACCTGtsyc--- ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0

MA1648.1_shift2 (TCF12(var.2))
; oligos_7nt_mkv4_m10 versus MA1648.1 (TCF12(var.2)); m=6/23; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.68318; --ssCACCTGCys---- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0 0

MA0522.3_shift2 (TCF3)
; oligos_7nt_mkv4_m10 versus MA0522.3 (TCF3); m=7/23; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.677302; --svCACCTGCss---- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0 0

MA1559.1_rc_shift2 (SNAI3_rc)
; oligos_7nt_mkv4_m10 versus MA1559.1_rc (SNAI3_rc); m=8/23; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.649444; --trCACCTGyt----- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0 0

MA0500.2_shift1 (MYOG)
; oligos_7nt_mkv4_m10 versus MA0500.2 (MYOG); m=9/23; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.646776; -sarCAGCTGyts---- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0

MA0103.3_shift2 (ZEB1)
; oligos_7nt_mkv4_m10 versus MA0103.3 (ZEB1); m=10/23; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.640453; --ssCACCTGsss---- ; cor=; Ncor= a 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 0 c 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 0 g 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 0 t 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0 0

MA1558.1_rc_shift2 (SNAI1_rc)
; oligos_7nt_mkv4_m10 versus MA1558.1_rc (SNAI1_rc); m=11/23; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.627293; --yrCACCTGyh----- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0 0

MA1620.1_shift1 (Ptf1a(var.3))
; oligos_7nt_mkv4_m10 versus MA1620.1 (Ptf1a(var.3)); m=12/23; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.624997; -rmaCACCTGtky---- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; oligos_7nt_mkv4_m10 versus MA0521.1_rc (Tcf12_rc); m=13/23; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.610971; -cwsCAGCTGYy----- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0

MA1100.2_rc_shift2 (ASCL1_rc)
; oligos_7nt_mkv4_m10 versus MA1100.2_rc (ASCL1_rc); m=14/23; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.580681; --rgCAGCTGyy----- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0

MA0816.1_shift2 (Ascl2)
; oligos_7nt_mkv4_m10 versus MA0816.1 (Ascl2); m=15/23; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.557461; --arCAGCTGyy----- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0

MA0820.1_shift2 (FIGLA)
; oligos_7nt_mkv4_m10 versus MA0820.1 (FIGLA); m=16/23; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.553169; --wmCACCTGkw----- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0

MA0048.2_shift2 (NHLH1)
; oligos_7nt_mkv4_m10 versus MA0048.2 (NHLH1); m=17/23; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.551115; --cGCAGCTGCk----- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0

MA0744.2_rc_shift1 (SCRT2_rc)
; oligos_7nt_mkv4_m10 versus MA0744.2_rc (SCRT2_rc); m=18/23; ncol2=16; w=13; offset=1; strand=R; shift=1; score=0.543835; -waccACCTGTTGmwyy ; cor=; Ncor= a 0 21453.0 18751.0 15588.0 11335.0 58889.0 2140.0 1471.0 1184.0 204.0 953.0 4384.0 3732.0 17252.0 16873.0 12071.0 15730.0 c 0 12430.0 14716.0 25288.0 38133.0 1168.0 60636.0 56105.0 252.0 319.0 1878.0 2265.0 1339.0 35769.0 12473.0 17497.0 17680.0 g 0 13846.0 16085.0 11351.0 5661.0 3475.0 972.0 728.0 294.0 64856.0 413.0 5536.0 59161.0 7236.0 6319.0 12732.0 13345.0 t 0 17881.0 16058.0 13383.0 10481.0 2078.0 1862.0 7306.0 63880.0 231.0 62366.0 53425.0 1378.0 5353.0 29945.0 23310.0 18855.0

MA1628.1_rc_shift4 (Zic1::Zic2_rc)
; oligos_7nt_mkv4_m10 versus MA1628.1_rc (Zic1::Zic2_rc); m=19/23; ncol2=11; w=10; offset=4; strand=R; shift=4; score=0.538494; ----ysCCTGCTGbg-- ; cor=; Ncor= a 0 0 0 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 0 0 c 0 0 0 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 0 0 g 0 0 0 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 0 0 t 0 0 0 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0 0 0

MA1635.1_shift2 (BHLHE22(var.2))
; oligos_7nt_mkv4_m10 versus MA1635.1 (BHLHE22(var.2)); m=20/23; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.508653; --csCAGCTGsg----- ; cor=; Ncor= a 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 c 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 g 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 t 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0

MA1560.1_rc_shift2 (SOHLH2_rc)
; oligos_7nt_mkv4_m10 versus MA1560.1_rc (SOHLH2_rc); m=21/23; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.506971; --ygCACGTGcr----- ; cor=; Ncor= a 0 0 224.0 153.0 4.0 1212.0 15.0 7.0 0.0 70.0 276.0 313.0 0 0 0 0 0 c 0 0 369.0 172.0 1212.0 0.0 1212.0 11.0 41.0 29.0 1212.0 184.0 0 0 0 0 0 g 0 0 239.0 1212.0 4.0 65.0 0.0 1212.0 0.0 1212.0 264.0 485.0 0 0 0 0 0 t 0 0 381.0 272.0 41.0 36.0 14.0 0.0 1212.0 45.0 172.0 230.0 0 0 0 0 0

MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)
; oligos_7nt_mkv4_m10 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=22/23; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.505519; --rrCAGCTGbt----- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0

MA1629.1_rc_shift3 (Zic2_rc)
; oligos_7nt_mkv4_m10 versus MA1629.1_rc (Zic2_rc); m=23/23; ncol2=14; w=11; offset=3; strand=R; shift=3; score=0.481378; ---cyyCCTGCTGtGmk ; cor=; Ncor= a 0 0 0 2104.0 1641.0 2472.0 154.0 410.0 441.0 298.0 67.0 268.0 120.0 2437.0 240.0 3893.0 2506.0 c 0 0 0 5314.0 4979.0 4911.0 11465.0 11184.0 735.0 269.0 11484.0 186.0 188.0 829.0 585.0 3821.0 2761.0 g 0 0 0 2168.0 1661.0 1476.0 204.0 133.0 118.0 11272.0 228.0 391.0 11476.0 1765.0 9933.0 1755.0 3507.0 t 0 0 0 2333.0 3638.0 3060.0 96.0 192.0 10625.0 80.0 140.0 11074.0 135.0 6888.0 1161.0 2450.0 3145.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m42_shift4 ; 38 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m42_shift4 (oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42)
; oligos_7nt_mkv4_m42 (oligos_7nt_mkv4_m42oligos_7nt_mkv4_m42); m=0 (reference); ncol1=11; shift=4; ncol=19; ----srTGAATCAys---- ; Alignment reference a 0 0 0 0 28 46 2 13 130 128 1 17 128 22 31 0 0 0 0 c 0 0 0 0 44 30 3 1 0 1 0 100 2 42 39 0 0 0 0 g 0 0 0 0 37 37 2 115 2 1 0 5 3 30 40 0 0 0 0 t 0 0 0 0 26 22 128 6 3 5 134 13 2 41 25 0 0 0 0

MA0476.1_rc_shift4 (FOS_rc)
; oligos_7nt_mkv4_m42 versus MA0476.1_rc (FOS_rc); m=1/37; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.836023; ----vATGAsTCAbh---- ; cor=; Ncor= a 0 0 0 0 9257.0 21777.0 0.0 0.0 29396.0 3113.0 0.0 2288.0 29396.0 903.0 11119.0 0 0 0 0 c 0 0 0 0 7897.0 1538.0 0.0 0.0 0.0 11206.0 0.0 27108.0 0.0 10841.0 9686.0 0 0 0 0 g 0 0 0 0 8236.0 5823.0 0.0 29396.0 0.0 14079.0 0.0 0.0 0.0 10177.0 712.0 0 0 0 0 t 0 0 0 0 4006.0 258.0 29396.0 0.0 0.0 998.0 29396.0 0.0 0.0 7475.0 7879.0 0 0 0 0

MA1634.1_shift4 (BATF)
; oligos_7nt_mkv4_m42 versus MA1634.1 (BATF); m=2/37; ncol2=11; w=11; offset=0; strand=D; shift=4; score=0.803601; ----waTGACTCAth---- ; cor=; Ncor= a 0 0 0 0 13555.0 22575.0 483.0 1139.0 45946.0 2051.0 1130.0 4742.0 45316.0 8146.0 16139.0 0 0 0 0 c 0 0 0 0 5742.0 8931.0 355.0 570.0 250.0 37333.0 306.0 40279.0 431.0 7566.0 12048.0 0 0 0 0 g 0 0 0 0 11492.0 8627.0 283.0 40617.0 341.0 5573.0 836.0 711.0 507.0 9681.0 5919.0 0 0 0 0 t 0 0 0 0 16219.0 6875.0 45887.0 4682.0 471.0 2051.0 44736.0 1276.0 754.0 21615.0 12902.0 0 0 0 0

MA0462.2_shift4 (BATF::JUN)
; oligos_7nt_mkv4_m42 versus MA0462.2 (BATF::JUN); m=3/37; ncol2=11; w=11; offset=0; strand=D; shift=4; score=0.799138; ----waTGACTCAth---- ; cor=; Ncor= a 0 0 0 0 10765.0 18789.0 367.0 834.0 37280.0 1399.0 755.0 3955.0 36854.0 6299.0 13407.0 0 0 0 0 c 0 0 0 0 4762.0 7260.0 275.0 400.0 204.0 31168.0 241.0 32770.0 318.0 6105.0 9668.0 0 0 0 0 g 0 0 0 0 9317.0 6729.0 182.0 33135.0 350.0 4188.0 539.0 522.0 424.0 7745.0 4923.0 0 0 0 0 t 0 0 0 0 13310.0 5376.0 37330.0 3785.0 320.0 1399.0 36619.0 907.0 558.0 18005.0 10156.0 0 0 0 0

MA0835.2_shift4 (BATF3)
; oligos_7nt_mkv4_m42 versus MA0835.2 (BATF3); m=4/37; ncol2=11; w=11; offset=0; strand=D; shift=4; score=0.782669; ----waTGACTCAtw---- ; cor=; Ncor= a 0 0 0 0 3609.0 6137.0 132.0 245.0 11670.0 408.0 267.0 1248.0 11529.0 2334.0 4521.0 0 0 0 0 c 0 0 0 0 1245.0 2106.0 59.0 62.0 92.0 10589.0 79.0 10347.0 84.0 1664.0 2733.0 0 0 0 0 g 0 0 0 0 2608.0 1831.0 37.0 10420.0 87.0 560.0 117.0 88.0 117.0 2249.0 1255.0 0 0 0 0 t 0 0 0 0 4503.0 1891.0 11737.0 1238.0 116.0 408.0 11502.0 282.0 235.0 5718.0 3456.0 0 0 0 0

MA0841.1_shift4 (NFE2)
; oligos_7nt_mkv4_m42 versus MA0841.1 (NFE2); m=5/37; ncol2=11; w=11; offset=0; strand=D; shift=4; score=0.756492; ----vATGACTCATs---- ; cor=; Ncor= a 0 0 0 0 5589.0 18831.0 2.0 0.0 18831.0 37.0 0.0 1.0 18831.0 0.0 487.0 0 0 0 0 c 0 0 0 0 7208.0 9.0 8.0 0.0 11.0 14360.0 20.0 18831.0 13.0 2689.0 9860.0 0 0 0 0 g 0 0 0 0 5303.0 1306.0 0.0 18831.0 0.0 4472.0 3.0 0.0 8.0 10.0 5067.0 0 0 0 0 t 0 0 0 0 731.0 5.0 18831.0 2.0 4.0 17.0 18831.0 3.0 5.0 18831.0 3417.0 0 0 0 0

MA1138.1_rc_shift5 (FOSL2::JUNB_rc)
; oligos_7nt_mkv4_m42 versus MA1138.1_rc (FOSL2::JUNB_rc); m=6/37; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.754676; -----rTGAsTCAym---- ; cor=; Ncor= a 0 0 0 0 0 602.0 0.0 0.0 973.0 85.0 0.0 14.0 999.0 13.0 277.0 0 0 0 0 c 0 0 0 0 0 112.0 0.0 0.0 26.0 292.0 0.0 985.0 0.0 314.0 407.0 0 0 0 0 g 0 0 0 0 0 251.0 0.0 831.0 0.0 568.0 0.0 0.0 0.0 53.0 164.0 0 0 0 0 t 0 0 0 0 0 35.0 999.0 168.0 1.0 54.0 999.0 0.0 0.0 621.0 151.0 0 0 0 0

MA1130.1_shift3 (FOSL2::JUN)
; oligos_7nt_mkv4_m42 versus MA1130.1 (FOSL2::JUN); m=7/37; ncol2=12; w=11; offset=-1; strand=D; shift=3; score=0.752376; ---kkrTGAGTCAym---- ; cor=; Ncor= a 0 0 0 189.0 214.0 542.0 1.0 1.0 847.0 103.0 1.0 20.0 998.0 19.0 269.0 0 0 0 0 c 0 0 0 248.0 179.0 121.0 1.0 1.0 123.0 141.0 1.0 979.0 0.0 299.0 341.0 0 0 0 0 g 0 0 0 295.0 338.0 282.0 1.0 840.0 1.0 698.0 1.0 1.0 1.0 93.0 180.0 0 0 0 0 t 0 0 0 268.0 269.0 55.0 998.0 158.0 29.0 58.0 998.0 1.0 1.0 589.0 209.0 0 0 0 0

MA1142.1_rc_shift5 (FOSL1::JUND_rc)
; oligos_7nt_mkv4_m42 versus MA1142.1_rc (FOSL1::JUND_rc); m=8/37; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.751128; -----aTkagTCAyy---- ; cor=; Ncor= a 0 0 0 0 0 470.0 31.0 64.0 669.0 180.0 41.0 140.0 913.0 40.0 235.0 0 0 0 0 c 0 0 0 0 0 144.0 17.0 25.0 187.0 191.0 82.0 777.0 34.0 282.0 279.0 0 0 0 0 g 0 0 0 0 0 212.0 40.0 641.0 45.0 581.0 12.0 61.0 23.0 127.0 221.0 0 0 0 0 t 0 0 0 0 0 174.0 912.0 270.0 98.0 49.0 864.0 22.0 30.0 551.0 265.0 0 0 0 0

MA1135.1_rc_shift5 (FOSB::JUNB_rc)
; oligos_7nt_mkv4_m42 versus MA1135.1_rc (FOSB::JUNB_rc); m=9/37; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.74714; -----rTGAsTCAym---- ; cor=; Ncor= a 0 0 0 0 0 578.0 1.0 1.0 958.0 61.0 1.0 19.0 998.0 20.0 270.0 0 0 0 0 c 0 0 0 0 0 126.0 1.0 1.0 39.0 309.0 1.0 980.0 1.0 321.0 429.0 0 0 0 0 g 0 0 0 0 0 259.0 0.0 808.0 1.0 596.0 1.0 0.0 0.0 61.0 182.0 0 0 0 0 t 0 0 0 0 0 37.0 998.0 191.0 2.0 34.0 997.0 1.0 1.0 598.0 119.0 0 0 0 0

MA1134.1_rc_shift3 (FOS::JUNB_rc)
; oligos_7nt_mkv4_m42 versus MA1134.1_rc (FOS::JUNB_rc); m=10/37; ncol2=12; w=11; offset=-1; strand=R; shift=3; score=0.745947; ---bkrTGAsTCAym---- ; cor=; Ncor= a 0 0 0 156.0 184.0 658.0 1.0 1.0 996.0 25.0 4.0 131.0 998.0 36.0 286.0 0 0 0 0 c 0 0 0 256.0 178.0 51.0 1.0 1.0 3.0 618.0 1.0 868.0 1.0 267.0 372.0 0 0 0 0 g 0 0 0 304.0 363.0 284.0 1.0 971.0 1.0 309.0 30.0 1.0 1.0 105.0 168.0 0 0 0 0 t 0 0 0 283.0 275.0 7.0 998.0 27.0 1.0 48.0 965.0 1.0 1.0 593.0 174.0 0 0 0 0

MA1144.1_shift4 (FOSL2::JUND)
; oligos_7nt_mkv4_m42 versus MA1144.1 (FOSL2::JUND); m=11/37; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.745342; ----krTGAsTCAy----- ; cor=; Ncor= a 0 0 0 0 137.0 634.0 0.0 0.0 998.0 46.0 6.0 140.0 999.0 38.0 0 0 0 0 0 c 0 0 0 0 143.0 60.0 0.0 0.0 1.0 604.0 0.0 860.0 0.0 266.0 0 0 0 0 0 g 0 0 0 0 446.0 291.0 0.0 990.0 0.0 292.0 60.0 0.0 0.0 113.0 0 0 0 0 0 t 0 0 0 0 275.0 14.0 999.0 10.0 0.0 58.0 934.0 0.0 0.0 583.0 0 0 0 0 0

MA0099.3_shift5 (FOS::JUN)
; oligos_7nt_mkv4_m42 versus MA0099.3 (FOS::JUN); m=12/37; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.739728; -----rTGAGTCAym---- ; cor=; Ncor= a 0 0 0 0 0 592.0 3.0 7.0 820.0 78.0 5.0 30.0 992.0 24.0 277.0 0 0 0 0 c 0 0 0 0 0 111.0 5.0 1.0 131.0 180.0 2.0 963.0 2.0 313.0 397.0 0 0 0 0 g 0 0 0 0 0 257.0 2.0 824.0 4.0 688.0 2.0 3.0 2.0 95.0 164.0 0 0 0 0 t 0 0 0 0 0 40.0 990.0 168.0 45.0 54.0 991.0 4.0 4.0 568.0 162.0 0 0 0 0

MA1137.1_rc_shift3 (FOSL1::JUNB_rc)
; oligos_7nt_mkv4_m42 versus MA1137.1_rc (FOSL1::JUNB_rc); m=13/37; ncol2=13; w=11; offset=-1; strand=R; shift=3; score=0.686219; ---gkaTKAgTCAymr--- ; cor=; Ncor= a 0 0 0 230.0 198.0 552.0 37.0 37.0 803.0 113.0 42.0 63.0 945.0 47.0 263.0 300.0 0 0 0 c 0 0 0 223.0 204.0 170.0 38.0 9.0 115.0 198.0 21.0 880.0 16.0 287.0 376.0 195.0 0 0 0 g 0 0 0 300.0 298.0 225.0 21.0 683.0 23.0 626.0 20.0 21.0 16.0 100.0 146.0 269.0 0 0 0 t 0 0 0 247.0 300.0 53.0 904.0 271.0 59.0 63.0 917.0 36.0 23.0 566.0 216.0 237.0 0 0 0

MA0477.2_rc_shift3 (FOSL1_rc)
; oligos_7nt_mkv4_m42 versus MA0477.2_rc (FOSL1_rc); m=14/37; ncol2=13; w=11; offset=-1; strand=R; shift=3; score=0.682783; ---rdaTGAGTCAtyh--- ; cor=; Ncor= a 0 0 0 15023.0 15056.0 38033.0 363.0 559.0 55860.0 2591.0 302.0 2246.0 56778.0 2795.0 13887.0 15363.0 0 0 0 c 0 0 0 11065.0 12314.0 6533.0 566.0 278.0 598.0 8615.0 286.0 54619.0 183.0 13127.0 16855.0 14848.0 0 0 0 g 0 0 0 17637.0 15640.0 10399.0 344.0 53711.0 163.0 43918.0 287.0 301.0 460.0 6703.0 11018.0 12491.0 0 0 0 t 0 0 0 13956.0 14671.0 2716.0 56408.0 3133.0 1060.0 2557.0 56806.0 515.0 260.0 35056.0 15921.0 14979.0 0 0 0

MA0478.1_rc_shift5 (FOSL2_rc)
; oligos_7nt_mkv4_m42 versus MA0478.1_rc (FOSL2_rc); m=15/37; ncol2=11; w=10; offset=1; strand=R; shift=5; score=0.678639; -----vTGAsTCAyym--- ; cor=; Ncor= a 0 0 0 0 0 1986.0 0.0 0.0 5318.0 194.0 0.0 0.0 5318.0 74.0 494.0 1405.0 0 0 0 c 0 0 0 0 0 1933.0 0.0 0.0 0.0 1838.0 192.0 5318.0 0.0 2328.0 2707.0 2086.0 0 0 0 g 0 0 0 0 0 1399.0 0.0 5113.0 0.0 3286.0 51.0 0.0 0.0 55.0 592.0 994.0 0 0 0 t 0 0 0 0 0 0.0 5318.0 205.0 0.0 0.0 5075.0 0.0 0.0 2861.0 1525.0 833.0 0 0 0

MA1128.1_rc_shift3 (FOSL1::JUN_rc)
; oligos_7nt_mkv4_m42 versus MA1128.1_rc (FOSL1::JUN_rc); m=16/37; ncol2=13; w=11; offset=-1; strand=R; shift=3; score=0.67525; ---kkaTGAGTCAymm--- ; cor=; Ncor= a 0 0 0 196.0 223.0 579.0 4.0 4.0 826.0 97.0 3.0 38.0 996.0 26.0 289.0 293.0 0 0 0 c 0 0 0 237.0 173.0 119.0 9.0 2.0 140.0 51.0 2.0 957.0 1.0 283.0 380.0 253.0 0 0 0 g 0 0 0 289.0 308.0 245.0 4.0 835.0 2.0 826.0 2.0 2.0 2.0 89.0 159.0 246.0 0 0 0 t 0 0 0 277.0 296.0 57.0 984.0 159.0 33.0 26.0 994.0 3.0 1.0 602.0 172.0 208.0 0 0 0

MA0491.2_rc_shift3 (JUND_rc)
; oligos_7nt_mkv4_m42 versus MA0491.2_rc (JUND_rc); m=17/37; ncol2=13; w=11; offset=-1; strand=R; shift=3; score=0.673854; ---ddATGAGTCAtyw--- ; cor=; Ncor= a 0 0 0 28704.0 27477.0 83216.0 809.0 1449.0 102249.0 4650.0 925.0 3920.0 104101.0 5020.0 25652.0 30507.0 0 0 0 c 0 0 0 19236.0 22249.0 7908.0 965.0 953.0 1147.0 20633.0 573.0 99787.0 443.0 20586.0 31347.0 25006.0 0 0 0 g 0 0 0 29793.0 28250.0 12025.0 751.0 98628.0 496.0 76028.0 650.0 873.0 757.0 10173.0 19712.0 21965.0 0 0 0 t 0 0 0 28212.0 27969.0 2796.0 103420.0 4915.0 2053.0 4634.0 103797.0 1365.0 644.0 70166.0 29234.0 28467.0 0 0 0

MA1141.1_shift3 (FOS::JUND)
; oligos_7nt_mkv4_m42 versus MA1141.1 (FOS::JUND); m=18/37; ncol2=13; w=11; offset=-1; strand=D; shift=3; score=0.673644; ---kkrTGAGTCAymv--- ; cor=; Ncor= a 0 0 0 183.0 182.0 593.0 0.0 0.0 894.0 75.0 0.0 29.0 999.0 21.0 250.0 264.0 0 0 0 c 0 0 0 244.0 167.0 104.0 1.0 0.0 91.0 40.0 0.0 970.0 0.0 290.0 370.0 264.0 0 0 0 g 0 0 0 315.0 389.0 266.0 0.0 871.0 0.0 867.0 0.0 0.0 0.0 77.0 195.0 292.0 0 0 0 t 0 0 0 258.0 263.0 38.0 999.0 129.0 15.0 19.0 999.0 0.0 0.0 612.0 185.0 180.0 0 0 0

MA0490.2_shift3 (JUNB)
; oligos_7nt_mkv4_m42 versus MA0490.2 (JUNB); m=19/37; ncol2=13; w=11; offset=-1; strand=D; shift=3; score=0.672283; ---wdATGACTCATwh--- ; cor=; Ncor= a 0 0 0 22772.0 23561.0 56607.0 538.0 770.0 78101.0 4755.0 1999.0 5243.0 77675.0 3722.0 21544.0 21137.0 0 0 0 c 0 0 0 16583.0 15807.0 7817.0 654.0 550.0 523.0 59784.0 289.0 73199.0 588.0 8876.0 19230.0 20653.0 0 0 0 g 0 0 0 18150.0 20403.0 11566.0 322.0 74757.0 550.0 10519.0 913.0 617.0 900.0 7508.0 16491.0 15068.0 0 0 0 t 0 0 0 22351.0 20085.0 3866.0 78342.0 3779.0 682.0 4798.0 76655.0 797.0 693.0 59750.0 22591.0 22998.0 0 0 0

MA1132.1_shift4 (JUN::JUNB)
; oligos_7nt_mkv4_m42 versus MA1132.1 (JUN::JUNB); m=20/37; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.671886; ----kaTGACkCAt----- ; cor=; Ncor= a 0 0 0 0 203.0 627.0 11.0 10.0 944.0 27.0 58.0 161.0 931.0 188.0 0 0 0 0 0 c 0 0 0 0 128.0 134.0 10.0 21.0 10.0 826.0 24.0 707.0 24.0 248.0 0 0 0 0 0 g 0 0 0 0 408.0 189.0 34.0 921.0 28.0 115.0 353.0 10.0 18.0 64.0 0 0 0 0 0 t 0 0 0 0 261.0 50.0 946.0 47.0 18.0 33.0 565.0 122.0 27.0 500.0 0 0 0 0 0

MA1639.1_shift2 (MEIS1(var.2))
; oligos_7nt_mkv4_m42 versus MA1639.1 (MEIS1(var.2)); m=21/37; ncol2=13; w=11; offset=-2; strand=D; shift=2; score=0.670542; --rhcATmAATCAww---- ; cor=; Ncor= a 0 0 1824.0 1864.0 970.0 6383.0 80.0 2295.0 6063.0 6112.0 127.0 156.0 5433.0 1735.0 1872.0 0 0 0 0 c 0 0 1425.0 1979.0 4571.0 61.0 69.0 3580.0 336.0 214.0 87.0 6367.0 279.0 1504.0 1542.0 0 0 0 0 g 0 0 1902.0 762.0 183.0 218.0 83.0 252.0 33.0 192.0 63.0 61.0 152.0 934.0 1261.0 0 0 0 0 t 0 0 1585.0 2131.0 1012.0 74.0 6504.0 609.0 304.0 218.0 6459.0 152.0 872.0 2563.0 2061.0 0 0 0 0

MA1113.2_shift2 (PBX2)
; oligos_7nt_mkv4_m42 versus MA1113.2 (PBX2); m=22/37; ncol2=13; w=11; offset=-2; strand=D; shift=2; score=0.669839; --rhcATAAATCAtw---- ; cor=; Ncor= a 0 0 8363.0 8307.0 4925.0 26620.0 225.0 24368.0 27245.0 27259.0 704.0 2298.0 25945.0 6993.0 7897.0 0 0 0 0 c 0 0 5863.0 8859.0 19645.0 629.0 588.0 2266.0 574.0 754.0 453.0 23894.0 848.0 7057.0 7086.0 0 0 0 0 g 0 0 9625.0 3047.0 1585.0 1710.0 317.0 817.0 343.0 569.0 327.0 555.0 352.0 3952.0 5574.0 0 0 0 0 t 0 0 5745.0 9383.0 3441.0 637.0 28466.0 2145.0 1434.0 1014.0 28112.0 2849.0 2451.0 11594.0 9039.0 0 0 0 0

MA0070.1_shift3 (PBX1)
; oligos_7nt_mkv4_m42 versus MA0070.1 (PBX1); m=23/37; ncol2=12; w=11; offset=-1; strand=D; shift=3; score=0.659068; ---hcATCAATCAww---- ; cor=; Ncor= a 0 0 0 5.0 3.0 16.0 1.0 0.0 17.0 17.0 0.0 0.0 16.0 12.0 8.0 0 0 0 0 c 0 0 0 6.0 9.0 1.0 1.0 18.0 1.0 0.0 0.0 18.0 1.0 0.0 2.0 0 0 0 0 g 0 0 0 2.0 3.0 1.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 1.0 2.0 0 0 0 0 t 0 0 0 5.0 3.0 0.0 16.0 0.0 0.0 1.0 17.0 0.0 1.0 5.0 6.0 0 0 0 0

MA1622.1_rc_shift3 (Smad2::Smad3_rc)
; oligos_7nt_mkv4_m42 versus MA1622.1_rc (Smad2::Smad3_rc); m=24/37; ncol2=14; w=11; offset=-1; strand=R; shift=3; score=0.650404; ---kwaTGAGTCAymay-- ; cor=; Ncor= a 0 0 0 2480.0 2764.0 5636.0 125.0 101.0 9977.0 696.0 102.0 405.0 10151.0 794.0 2725.0 2998.0 2481.0 0 0 c 0 0 0 2524.0 2154.0 1979.0 79.0 90.0 68.0 1542.0 58.0 9768.0 56.0 2888.0 3479.0 2324.0 2615.0 0 0 g 0 0 0 2595.0 2479.0 2047.0 85.0 9443.0 53.0 7480.0 44.0 82.0 59.0 2212.0 1642.0 2515.0 2254.0 0 0 t 0 0 0 2746.0 2948.0 683.0 10056.0 711.0 247.0 627.0 10141.0 90.0 79.0 4451.0 2499.0 2508.0 2995.0 0 0

MA0655.1_shift5 (JDP2)
; oligos_7nt_mkv4_m42 versus MA0655.1 (JDP2); m=25/37; ncol2=9; w=9; offset=1; strand=D; shift=5; score=0.633199; -----ATGASTCAT----- ; cor=; Ncor= a 0 0 0 0 0 1634.0 5.0 0.0 1634.0 14.0 6.0 22.0 1634.0 22.0 0 0 0 0 0 c 0 0 0 0 0 19.0 6.0 3.0 1.0 1200.0 0.0 1634.0 0.0 404.0 0 0 0 0 0 g 0 0 0 0 0 140.0 1.0 1634.0 2.0 434.0 6.0 3.0 0.0 5.0 0 0 0 0 0 t 0 0 0 0 0 8.0 1634.0 22.0 25.0 13.0 1634.0 9.0 7.0 1634.0 0 0 0 0 0

MA1633.1_shift4 (BACH1)
; oligos_7nt_mkv4_m42 versus MA1633.1 (BACH1); m=26/37; ncol2=13; w=11; offset=0; strand=D; shift=4; score=0.624665; ----saTGACTCAGCaw-- ; cor=; Ncor= a 0 0 0 0 3257.0 6929.0 105.0 97.0 15046.0 443.0 650.0 576.0 14778.0 339.0 769.0 8799.0 4492.0 0 0 c 0 0 0 0 3946.0 3833.0 267.0 149.0 230.0 12597.0 220.0 14563.0 194.0 623.0 13382.0 2167.0 3574.0 0 0 g 0 0 0 0 4835.0 3848.0 149.0 14831.0 167.0 2083.0 266.0 178.0 310.0 13050.0 858.0 1971.0 3553.0 0 0 t 0 0 0 0 3519.0 947.0 15036.0 480.0 114.0 434.0 14421.0 240.0 275.0 1545.0 548.0 2620.0 3938.0 0 0

MA1640.1_rc_shift1 (MEIS2(var.2)_rc)
; oligos_7nt_mkv4_m42 versus MA1640.1_rc (MEIS2(var.2)_rc); m=27/37; ncol2=15; w=11; offset=-3; strand=R; shift=1; score=0.572697; -rrycATAAATCAtty--- ; cor=; Ncor= a 0 7008.0 5597.0 4603.0 3599.0 18144.0 157.0 16167.0 18982.0 18830.0 381.0 1067.0 14420.0 3983.0 5004.0 4882.0 0 0 0 c 0 3361.0 4176.0 8199.0 12862.0 502.0 495.0 1801.0 278.0 499.0 224.0 17326.0 1400.0 3896.0 4683.0 5768.0 0 0 0 g 0 5248.0 6518.0 1609.0 1089.0 1053.0 177.0 582.0 201.0 268.0 207.0 302.0 468.0 2365.0 4041.0 3311.0 0 0 0 t 0 4556.0 3882.0 5762.0 2623.0 474.0 19344.0 1623.0 712.0 576.0 19361.0 1478.0 3885.0 9929.0 6445.0 6212.0 0 0 0

MA0489.1_rc_shift5 (JUN(var.2)_rc)
; oligos_7nt_mkv4_m42 versus MA0489.1_rc (JUN(var.2)_rc); m=28/37; ncol2=14; w=10; offset=1; strand=R; shift=5; score=0.554913; -----aTGAsTCAyyyyyy ; cor=; Ncor= a 0 0 0 0 0 5426.0 0.0 0.0 10757.0 780.0 3.0 0.0 10956.0 0.0 2004.0 1977.0 1773.0 1595.0 2036.0 c 0 0 0 0 0 2645.0 0.0 0.0 0.0 4090.0 0.0 10956.0 0.0 4033.0 4213.0 3461.0 4330.0 4110.0 2818.0 g 0 0 0 0 0 2509.0 0.0 10000.0 0.0 5704.0 0.0 0.0 0.0 993.0 593.0 1122.0 1127.0 1324.0 1250.0 t 0 0 0 0 0 376.0 10956.0 956.0 199.0 382.0 10953.0 0.0 0.0 5930.0 4146.0 4396.0 3726.0 3927.0 4852.0

MA0496.3_shift3 (MAFK)
; oligos_7nt_mkv4_m42 versus MA0496.3 (MAFK); m=29/37; ncol2=15; w=11; offset=-1; strand=D; shift=3; score=0.530872; ---tgmTGACTCAGCmww- ; cor=; Ncor= a 0 0 0 11946.0 9602.0 14089.0 1616.0 1108.0 47484.0 2492.0 2722.0 1818.0 47675.0 1439.0 2664.0 24802.0 15933.0 14818.0 0 c 0 0 0 10789.0 10655.0 27000.0 1568.0 1366.0 1670.0 39125.0 1133.0 47872.0 882.0 1921.0 43458.0 14138.0 10737.0 9756.0 0 g 0 0 0 9969.0 21904.0 6706.0 1058.0 46695.0 1306.0 7573.0 1081.0 957.0 1267.0 44013.0 3327.0 4590.0 10512.0 8541.0 0 t 0 0 0 19030.0 9573.0 3939.0 47492.0 2565.0 1274.0 2544.0 46798.0 1087.0 1910.0 4361.0 2285.0 8204.0 14552.0 18619.0 0

MA0611.1_shift6 (Dux)
; oligos_7nt_mkv4_m42 versus MA0611.1 (Dux); m=30/37; ncol2=8; w=8; offset=2; strand=D; shift=6; score=0.51636; ------sCAATCAa----- ; cor=; Ncor= a 0 0 0 0 0 0 219.0 0.0 999.0 999.0 0.0 0.0 999.0 485.0 0 0 0 0 0 c 0 0 0 0 0 0 312.0 869.0 0.0 0.0 0.0 999.0 0.0 31.0 0 0 0 0 0 g 0 0 0 0 0 0 250.0 0.0 0.0 0.0 0.0 0.0 0.0 242.0 0 0 0 0 0 t 0 0 0 0 0 0 219.0 131.0 0.0 0.0 999.0 0.0 0.0 242.0 0 0 0 0 0

MA0468.1_shift2 (DUX4)
; oligos_7nt_mkv4_m42 versus MA0468.1 (DUX4); m=31/37; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.501247; --TAAyyyAATCA------ ; cor=; Ncor= a 0 0 7297.0 37001.0 38217.0 5228.0 0.0 0.0 35278.0 38217.0 0.0 0.0 33798.0 0 0 0 0 0 0 c 0 0 2495.0 0.0 0.0 11675.0 16478.0 13951.0 2889.0 0.0 0.0 37408.0 0.0 0 0 0 0 0 0 g 0 0 979.0 1216.0 0.0 2002.0 4981.0 6127.0 0.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 t 0 0 27446.0 0.0 0.0 19312.0 16758.0 18139.0 50.0 0.0 38217.0 809.0 4419.0 0 0 0 0 0 0

MA0089.2_shift2 (NFE2L1)
; oligos_7nt_mkv4_m42 versus MA0089.2 (NFE2L1); m=32/37; ncol2=16; w=11; offset=-2; strand=D; shift=2; score=0.483901; --avmATGACTCAGCAaw- ; cor=; Ncor= a 0 0 1244.0 878.0 992.0 2582.0 12.0 17.0 3336.0 51.0 218.0 185.0 3171.0 57.0 16.0 2857.0 1362.0 1145.0 0 c 0 0 703.0 946.0 853.0 57.0 5.0 7.0 4.0 2864.0 12.0 3049.0 9.0 18.0 3281.0 64.0 517.0 224.0 0 g 0 0 671.0 1050.0 742.0 706.0 2.0 3308.0 10.0 358.0 35.0 25.0 78.0 3018.0 33.0 142.0 694.0 305.0 0 t 0 0 738.0 482.0 769.0 11.0 3337.0 24.0 6.0 83.0 3091.0 97.0 98.0 263.0 26.0 293.0 783.0 1682.0 0

MA0790.1_shift5 (POU4F1)
; oligos_7nt_mkv4_m42 versus MA0790.1 (POU4F1); m=33/37; ncol2=14; w=10; offset=1; strand=D; shift=5; score=0.472457; -----aTgmATwATTaATg ; cor=; Ncor= a 0 0 0 0 0 2418.0 153.0 1032.0 1720.0 2950.0 91.0 2811.0 2915.0 465.0 390.0 2825.0 3181.0 276.0 1054.0 c 0 0 0 0 0 1035.0 236.0 376.0 1661.0 47.0 15.0 102.0 124.0 106.0 72.0 668.0 36.0 359.0 652.0 g 0 0 0 0 0 1085.0 125.0 3857.0 29.0 25.0 15.0 145.0 144.0 129.0 262.0 696.0 54.0 220.0 3454.0 t 0 0 0 0 0 949.0 3553.0 750.0 76.0 139.0 3511.0 1316.0 638.0 3201.0 3218.0 1116.0 15.0 3102.0 1576.0

MA0038.2_shift6 (GFI1)
; oligos_7nt_mkv4_m42 versus MA0038.2 (GFI1); m=34/37; ncol2=12; w=9; offset=2; strand=D; shift=6; score=0.464558; ------cmAATCACdGCa- ; cor=; Ncor= a 0 0 0 0 0 0 3668.0 19146.0 30168.0 30150.0 0.0 15.0 29255.0 838.0 7748.0 2294.0 292.0 16713.0 0 c 0 0 0 0 0 0 11575.0 10155.0 2.0 0.0 0.0 30139.0 0.0 27769.0 54.0 266.0 27891.0 5221.0 0 g 0 0 0 0 0 0 7376.0 812.0 0.0 0.0 0.0 0.0 0.0 3888.0 8349.0 27514.0 0.0 4079.0 0 t 0 0 0 0 0 0 7527.0 565.0 0.0 1.0 30161.0 10.0 1594.0 0.0 13996.0 888.0 3702.0 4134.0 0

MA1101.2_shift0 (BACH2)
; oligos_7nt_mkv4_m42 versus MA1101.2 (BACH2); m=35/37; ncol2=19; w=11; offset=-4; strand=D; shift=0; score=0.445831; awasCATGAsTCATsvtwt ; cor=; Ncor= a 26746.0 38327.0 59307.0 12404.0 9369.0 62993.0 1.0 6.0 67846.0 50.0 3.0 115.0 68264.0 47.0 4522.0 19650.0 18457.0 23586.0 15261.0 c 12203.0 8823.0 5534.0 21218.0 61580.0 260.0 7.0 0.0 1088.0 37438.0 20.0 68215.0 2.0 11634.0 35220.0 17682.0 13438.0 10703.0 15623.0 g 13720.0 9605.0 8490.0 21257.0 6727.0 15304.0 1.0 68240.0 13.0 30785.0 856.0 0.0 11.0 2028.0 30498.0 19155.0 7650.0 8221.0 11268.0 t 15601.0 24469.0 15405.0 13391.0 8116.0 0.0 68266.0 54.0 6.0 18.0 67975.0 3.0 0.0 63746.0 5274.0 11783.0 54749.0 39012.0 26118.0

MA0501.1_shift5 (MAF::NFE2)
; oligos_7nt_mkv4_m42 versus MA0501.1 (MAF::NFE2); m=36/37; ncol2=15; w=10; offset=1; strand=D; shift=5; score=0.437705; -----rTGACTCAGCArww ; cor=; Ncor= a 0 0 0 0 0 726.0 0.0 0.0 1090.0 16.0 110.0 80.0 978.0 8.0 0.0 931.0 383.0 361.0 292.0 c 0 0 0 0 0 26.0 0.0 0.0 0.0 871.0 1.0 937.0 0.0 4.0 1063.0 17.0 203.0 100.0 102.0 g 0 0 0 0 0 334.0 0.0 1082.0 0.0 166.0 12.0 22.0 51.0 1041.0 22.0 73.0 283.0 130.0 91.0 t 0 0 0 0 0 4.0 1090.0 8.0 0.0 37.0 967.0 51.0 61.0 37.0 5.0 69.0 221.0 499.0 605.0

MA0483.1_shift7 (Gfi1b)
; oligos_7nt_mkv4_m42 versus MA0483.1 (Gfi1b); m=37/37; ncol2=11; w=8; offset=3; strand=D; shift=7; score=0.40781; -------aAATCwCwGCw- ; cor=; Ncor= a 0 0 0 0 0 0 0 1124.0 1761.0 1759.0 0.0 0.0 1033.0 61.0 1116.0 57.0 142.0 740.0 0 c 0 0 0 0 0 0 0 438.0 0.0 0.0 338.0 1761.0 21.0 1312.0 0.0 1.0 1328.0 433.0 0 g 0 0 0 0 0 0 0 104.0 0.0 2.0 28.0 0.0 0.0 388.0 1.0 1676.0 76.0 130.0 0 t 0 0 0 0 0 0 0 95.0 0.0 0.0 1395.0 0.0 707.0 0.0 644.0 27.0 215.0 458.0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m13_shift4 ; 37 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m13_shift4 (oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13)
; oligos_7nt_mkv4_m13 (oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13); m=0 (reference); ncol1=11; shift=4; ncol=16; ----rvACAGATGsc- ; Alignment reference a 0 0 0 0 78 77 283 6 275 4 283 0 4 47 68 0 c 0 0 0 0 59 85 0 269 2 0 0 5 0 82 101 0 g 0 0 0 0 84 91 0 0 6 274 0 0 278 112 50 0 t 0 0 0 0 62 30 0 8 0 5 0 278 1 42 64 0

MA1638.1_shift5 (HAND2)
; oligos_7nt_mkv4_m13 versus MA1638.1 (HAND2); m=1/36; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.835192; -----amCAGATGby- ; cor=; Ncor= a 0 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 c 0 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 g 0 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 t 0 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0

MA1642.1_shift3 (NEUROG2(var.2))
; oligos_7nt_mkv4_m13 versus MA1642.1 (NEUROG2(var.2)); m=2/36; ncol2=13; w=11; offset=-1; strand=D; shift=3; score=0.794319; ---rrraCAGATGGyv ; cor=; Ncor= a 0 0 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 9464.0 c 0 0 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 9034.0 g 0 0 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 8709.0 t 0 0 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0 7184.0

MA1109.1_shift4 (NEUROD1)
; oligos_7nt_mkv4_m13 versus MA1109.1 (NEUROD1); m=3/36; ncol2=13; w=11; offset=0; strand=D; shift=4; score=0.790608; ----graCAGATGGyr ; cor=; Ncor= a 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 c 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 g 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 t 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0

MA1618.1_shift4 (Ptf1a)
; oligos_7nt_mkv4_m13 versus MA1618.1 (Ptf1a); m=4/36; ncol2=13; w=11; offset=0; strand=D; shift=4; score=0.781177; ----dmaCAGATGttk ; cor=; Ncor= a 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 c 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 g 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 t 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0

MA0633.1_rc_shift5 (Twist2_rc)
; oligos_7nt_mkv4_m13 versus MA0633.1_rc (Twist2_rc); m=5/36; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.725064; -----mACATATGky- ; cor=; Ncor= a 0 0 0 0 0 365.0 745.0 0.0 1000.0 0.0 783.0 0.0 0.0 69.0 200.0 0 c 0 0 0 0 0 272.0 155.0 1000.0 0.0 211.0 0.0 0.0 0.0 69.0 298.0 0 g 0 0 0 0 0 181.0 50.0 0.0 0.0 0.0 217.0 0.0 1000.0 580.0 200.0 0 t 0 0 0 0 0 181.0 50.0 0.0 0.0 789.0 0.0 1000.0 0.0 282.0 302.0 0

MA1472.1_rc_shift5 (BHLHA15(var.2)_rc)
; oligos_7nt_mkv4_m13 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=6/36; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.720624; -----rrCAGCTGbt- ; cor=; Ncor= a 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 c 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 g 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 t 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0

MA0461.2_shift5 (Atoh1)
; oligos_7nt_mkv4_m13 versus MA0461.2 (Atoh1); m=7/36; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.708703; -----rmCATATGky- ; cor=; Ncor= a 0 0 0 0 0 655.0 523.0 42.0 1027.0 17.0 1027.0 22.0 2.0 34.0 128.0 0 c 0 0 0 0 0 108.0 334.0 1027.0 20.0 10.0 74.0 4.0 1.0 234.0 494.0 0 g 0 0 0 0 0 372.0 149.0 8.0 34.0 136.0 0.0 5.0 1027.0 376.0 126.0 0 t 0 0 0 0 0 59.0 21.0 0.0 0.0 1027.0 0.0 1027.0 31.0 384.0 533.0 0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; oligos_7nt_mkv4_m13 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=8/36; ncol2=12; w=11; offset=0; strand=R; shift=4; score=0.699104; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0

MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)
; oligos_7nt_mkv4_m13 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=9/36; ncol2=12; w=11; offset=0; strand=R; shift=4; score=0.689437; ----rmaCAGCTGtky ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0

MA1570.1_shift5 (TFAP4(var.2))
; oligos_7nt_mkv4_m13 versus MA1570.1 (TFAP4(var.2)); m=10/36; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.68741; -----ahCAyrTGkt- ; cor=; Ncor= a 0 0 0 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 c 0 0 0 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 g 0 0 0 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 t 0 0 0 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0

MA1641.1_shift4 (MYF5)
; oligos_7nt_mkv4_m13 versus MA1641.1 (MYF5); m=11/36; ncol2=12; w=11; offset=0; strand=D; shift=4; score= 0.687; ----gvaCAGCTGtbc ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0

MA0499.2_rc_shift3 (MYOD1_rc)
; oligos_7nt_mkv4_m13 versus MA0499.2_rc (MYOD1_rc); m=12/36; ncol2=13; w=11; offset=-1; strand=R; shift=3; score=0.684998; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0

MA0669.1_shift5 (NEUROG2)
; oligos_7nt_mkv4_m13 versus MA0669.1 (NEUROG2); m=13/36; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.684488; -----raCATATGtY- ; cor=; Ncor= a 0 0 0 0 0 246.0 426.0 1.0 426.0 4.0 426.0 5.0 0.0 3.0 0.0 0 c 0 0 0 0 0 2.0 150.0 426.0 0.0 5.0 8.0 3.0 0.0 170.0 307.0 0 g 0 0 0 0 0 180.0 65.0 0.0 3.0 20.0 5.0 0.0 426.0 147.0 0.0 0 t 0 0 0 0 0 0.0 0.0 5.0 0.0 426.0 0.0 426.0 0.0 426.0 119.0 0

MA1467.1_shift5 (ATOH1(var.2))
; oligos_7nt_mkv4_m13 versus MA1467.1 (ATOH1(var.2)); m=14/36; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.684181; -----AACAGCTGTY- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0

MA1123.2_shift3 (TWIST1)
; oligos_7nt_mkv4_m13 versus MA1123.2 (TWIST1); m=15/36; ncol2=13; w=11; offset=-1; strand=D; shift=3; score=0.682129; ---awwCCAGATGtbt ; cor=; Ncor= a 0 0 0 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 6823.0 c 0 0 0 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 6561.0 g 0 0 0 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 6213.0 t 0 0 0 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0 7736.0

MA1524.1_rc_shift4 (MSGN1_rc)
; oligos_7nt_mkv4_m13 versus MA1524.1_rc (MSGN1_rc); m=16/36; ncol2=12; w=11; offset=0; strand=R; shift=4; score=0.678881; ----srmCAwwTGGys ; cor=; Ncor= a 0 0 0 0 1228.0 3104.0 3269.0 0.0 6373.0 2607.0 3950.0 0.0 0.0 726.0 408.0 1488.0 c 0 0 0 0 1781.0 1503.0 3104.0 6373.0 17.0 814.0 112.0 374.0 17.0 1613.0 3277.0 1615.0 g 0 0 0 0 1976.0 3269.0 1132.0 10.0 287.0 190.0 627.0 0.0 6373.0 6373.0 576.0 2080.0 t 0 0 0 0 1388.0 514.0 412.0 0.0 10.0 3766.0 2424.0 6373.0 0.0 663.0 3096.0 1190.0

MA1468.1_rc_shift5 (ATOH7_rc)
; oligos_7nt_mkv4_m13 versus MA1468.1_rc (ATOH7_rc); m=17/36; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.676637; -----rmCATATGkT- ; cor=; Ncor= a 0 0 0 0 0 312.0 291.0 0.0 712.0 0.0 712.0 58.0 0.0 45.0 62.0 0 c 0 0 0 0 0 2.0 261.0 712.0 25.0 78.0 59.0 102.0 0.0 154.0 142.0 0 g 0 0 0 0 0 400.0 155.0 0.0 25.0 180.0 106.0 0.0 712.0 211.0 97.0 0 t 0 0 0 0 0 17.0 5.0 0.0 0.0 712.0 15.0 712.0 0.0 302.0 712.0 0

MA0623.2_rc_shift5 (NEUROG1_rc)
; oligos_7nt_mkv4_m13 versus MA0623.2_rc (NEUROG1_rc); m=18/36; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.669338; -----rmCATATGty- ; cor=; Ncor= a 0 0 0 0 0 1673.0 1933.0 0.0 3518.0 0.0 3518.0 0.0 0.0 14.0 33.0 0 c 0 0 0 0 0 187.0 907.0 3518.0 0.0 80.0 0.0 63.0 8.0 729.0 1860.0 0 g 0 0 0 0 0 1844.0 655.0 0.0 86.0 0.0 114.0 0.0 3518.0 876.0 118.0 0 t 0 0 0 0 0 68.0 23.0 0.0 0.0 3518.0 4.0 3518.0 0.0 1898.0 1658.0 0

MA0820.1_rc_shift5 (FIGLA_rc)
; oligos_7nt_mkv4_m13 versus MA0820.1_rc (FIGLA_rc); m=19/36; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.668118; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0

MA1646.1_shift4 (OSR2)
; oligos_7nt_mkv4_m13 versus MA1646.1 (OSR2); m=20/36; ncol2=12; w=11; offset=0; strand=D; shift=4; score=0.665163; ----amaCAGAAGChr ; cor=; Ncor= a 0 0 0 0 4437.0 4244.0 8520.0 254.0 13599.0 216.0 11678.0 13725.0 416.0 666.0 4386.0 4048.0 c 0 0 0 0 3641.0 4206.0 2221.0 13937.0 197.0 229.0 703.0 288.0 170.0 12109.0 4274.0 3304.0 g 0 0 0 0 3246.0 3006.0 2117.0 406.0 737.0 14206.0 901.0 516.0 13982.0 841.0 2266.0 4726.0 t 0 0 0 0 3484.0 3352.0 1950.0 211.0 275.0 157.0 1526.0 279.0 240.0 1192.0 3882.0 2730.0

MA1559.1_shift5 (SNAI3)
; oligos_7nt_mkv4_m13 versus MA1559.1 (SNAI3); m=21/36; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.659055; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0

MA0521.1_shift5 (Tcf12)
; oligos_7nt_mkv4_m13 versus MA0521.1 (Tcf12); m=22/36; ncol2=11; w=10; offset=1; strand=D; shift=5; score=0.658812; -----rRCAGCTGswg ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0

MA1100.2_shift5 (ASCL1)
; oligos_7nt_mkv4_m13 versus MA1100.2 (ASCL1); m=23/36; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.652632; -----rrCAGCTGcy- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0

MA0745.2_rc_shift3 (SNAI2_rc)
; oligos_7nt_mkv4_m13 versus MA0745.2_rc (SNAI2_rc); m=24/36; ncol2=13; w=11; offset=-1; strand=R; shift=3; score=0.64966; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0

MA1108.2_shift5 (MXI1)
; oligos_7nt_mkv4_m13 versus MA1108.2 (MXI1); m=25/36; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.649259; -----rvCACATGkc- ; cor=; Ncor= a 0 0 0 0 0 5786.0 6184.0 109.0 21870.0 10.0 20506.0 0.0 527.0 2833.0 4945.0 0 c 0 0 0 0 0 4724.0 5841.0 21382.0 1.0 21552.0 0.0 507.0 114.0 5329.0 6343.0 0 g 0 0 0 0 0 6326.0 6078.0 97.0 170.0 18.0 1542.0 0.0 21232.0 7228.0 5394.0 0 t 0 0 0 0 0 5212.0 3945.0 460.0 7.0 468.0 0.0 21541.0 175.0 6658.0 5366.0 0

MA0667.1_rc_shift5 (MYF6_rc)
; oligos_7nt_mkv4_m13 versus MA0667.1_rc (MYF6_rc); m=26/36; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.647245; -----RACAGyTGTT- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 c 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 g 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 t 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0

MA0100.3_rc_shift5 (MYB_rc)
; oligos_7nt_mkv4_m13 versus MA0100.3_rc (MYB_rc); m=27/36; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.644526; -----kdCAGTTGvk- ; cor=; Ncor= a 0 0 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 c 0 0 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 g 0 0 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 t 0 0 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0

MA0817.1_shift4 (BHLHE23)
; oligos_7nt_mkv4_m13 versus MA0817.1 (BHLHE23); m=28/36; ncol2=12; w=11; offset=0; strand=D; shift=4; score=0.643663; ----aAmCATATGkTw ; cor=; Ncor= a 0 0 0 0 2550.0 5005.0 2779.0 21.0 5005.0 0.0 5005.0 47.0 0.0 13.0 243.0 1523.0 c 0 0 0 0 686.0 55.0 1286.0 5005.0 0.0 4.0 5.0 115.0 4.0 1203.0 1468.0 911.0 g 0 0 0 0 858.0 890.0 932.0 0.0 67.0 1.0 3.0 5.0 5005.0 1771.0 92.0 964.0 t 0 0 0 0 912.0 44.0 8.0 0.0 17.0 5005.0 0.0 5005.0 7.0 2018.0 5005.0 1606.0

MA0668.1_rc_shift5 (NEUROD2_rc)
; oligos_7nt_mkv4_m13 versus MA0668.1_rc (NEUROD2_rc); m=29/36; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.643073; -----rmCATATGky- ; cor=; Ncor= a 0 0 0 0 0 685.0 548.0 112.0 1587.0 4.0 1587.0 52.0 0.0 0.0 95.0 0 c 0 0 0 0 0 101.0 705.0 1587.0 0.0 38.0 0.0 308.0 95.0 240.0 769.0 0 g 0 0 0 0 0 592.0 373.0 0.0 328.0 120.0 156.0 0.0 1587.0 875.0 119.0 0 t 0 0 0 0 0 209.0 0.0 0.0 0.0 1587.0 0.0 1587.0 0.0 527.0 604.0 0

MA0665.1_rc_shift5 (MSC_rc)
; oligos_7nt_mkv4_m13 versus MA0665.1_rc (MSC_rc); m=30/36; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.636647; -----AACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0

MA0091.1_rc_shift5 (TAL1::TCF3_rc)
; oligos_7nt_mkv4_m13 versus MA0091.1_rc (TAL1::TCF3_rc); m=31/36; ncol2=12; w=10; offset=1; strand=R; shift=5; score=0.620631; -----AmCAKMTGkTc ; cor=; Ncor= a 0 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 c 0 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 g 0 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 t 0 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0

MA0698.1_shift3 (ZBTB18)
; oligos_7nt_mkv4_m13 versus MA0698.1 (ZBTB18); m=32/36; ncol2=13; w=11; offset=-1; strand=D; shift=3; score=0.618535; ---hatCCAGATGTkb ; cor=; Ncor= a 0 0 0 3561.0 7064.0 1177.0 3618.0 21.0 13670.0 3.0 13670.0 14.0 3.0 48.0 210.0 1725.0 c 0 0 0 4188.0 753.0 1937.0 13670.0 13670.0 5.0 245.0 1048.0 15.0 1.0 314.0 177.0 4042.0 g 0 0 0 2499.0 2535.0 5212.0 1899.0 3.0 33.0 13670.0 278.0 94.0 13670.0 36.0 5530.0 3876.0 t 0 0 0 3423.0 3319.0 13670.0 60.0 8.0 206.0 6.0 297.0 13670.0 1.0 13670.0 8140.0 4027.0

MA0607.1_rc_shift6 (Bhlha15_rc)
; oligos_7nt_mkv4_m13 versus MA0607.1_rc (Bhlha15_rc); m=33/36; ncol2=8; w=8; offset=2; strand=R; shift=6; score=0.605756; ------aCATATGs-- ; cor=; Ncor= a 0 0 0 0 0 0 614.0 0.0 999.0 0.0 799.0 0.0 0.0 1.0 0 0 c 0 0 0 0 0 0 154.0 999.0 0.0 0.0 200.0 0.0 0.0 286.0 0 0 g 0 0 0 0 0 0 231.0 0.0 0.0 200.0 0.0 0.0 999.0 571.0 0 0 t 0 0 0 0 0 0 1.0 0.0 0.0 799.0 0.0 999.0 0.0 143.0 0 0

MA1485.1_rc_shift3 (FERD3L_rc)
; oligos_7nt_mkv4_m13 versus MA1485.1_rc (FERD3L_rc); m=34/36; ncol2=14; w=11; offset=-1; strand=R; shift=3; score=0.599037; ---GTrACAGCTGkyr ; cor=; Ncor= a 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 c 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 g 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 t 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0

MA1621.1_rc_shift3 (Rbpjl_rc)
; oligos_7nt_mkv4_m13 versus MA1621.1_rc (Rbpjl_rc); m=35/36; ncol2=14; w=11; offset=-1; strand=R; shift=3; score=0.591656; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0

MA0743.2_shift0 (SCRT1)
; oligos_7nt_mkv4_m13 versus MA0743.2 (SCRT1); m=36/36; ncol2=16; w=11; offset=-4; strand=D; shift=0; score=0.482575; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m8_shift2 ; 30 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m8_shift2 (oligos_7nt_mkv4_m8oligos_7nt_mkv4_m8)
; oligos_7nt_mkv4_m8 (oligos_7nt_mkv4_m8oligos_7nt_mkv4_m8); m=0 (reference); ncol1=15; shift=2; ncol=17; --srCAACAGCTGTChc ; Alignment reference a 0 0 104 115 32 356 307 1 416 6 5 1 0 15 8 118 60 c 0 0 130 104 299 36 28 416 1 5 397 0 1 32 332 127 156 g 0 0 122 135 55 11 72 0 0 407 10 0 416 15 43 63 100 t 0 0 62 64 32 15 11 1 1 0 6 417 1 356 35 110 102

MA0832.1_rc_shift3 (Tcf21_rc)
; oligos_7nt_mkv4_m8 versus MA0832.1_rc (Tcf21_rc); m=1/29; ncol2=14; w=14; offset=1; strand=R; shift=3; score=0.833677; ---ryAACAGCTGTTry ; cor=; Ncor= a 0 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 c 0 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 g 0 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 t 0 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0

MA1485.1_shift3 (FERD3L)
; oligos_7nt_mkv4_m8 versus MA1485.1 (FERD3L); m=2/29; ncol2=14; w=14; offset=1; strand=D; shift=3; score=0.764439; ---GyrmCAGCTGTyAC ; cor=; Ncor= a 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 c 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 g 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 t 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0

MA1641.1_rc_shift4 (MYF5_rc)
; oligos_7nt_mkv4_m8 versus MA1641.1_rc (MYF5_rc); m=3/29; ncol2=12; w=12; offset=2; strand=R; shift=4; score=0.726187; ----gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0

MA1621.1_shift3 (Rbpjl)
; oligos_7nt_mkv4_m8 versus MA1621.1 (Rbpjl); m=4/29; ncol2=14; w=14; offset=1; strand=D; shift=3; score=0.715278; ---svmaCACCTGtsyc ; cor=; Ncor= a 0 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 c 0 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 g 0 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 t 0 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0

MA1619.1_shift4 (Ptf1a(var.2))
; oligos_7nt_mkv4_m8 versus MA1619.1 (Ptf1a(var.2)); m=5/29; ncol2=12; w=12; offset=2; strand=D; shift=4; score=0.712841; ----rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA1618.1_rc_shift3 (Ptf1a_rc)
; oligos_7nt_mkv4_m8 versus MA1618.1_rc (Ptf1a_rc); m=6/29; ncol2=13; w=13; offset=1; strand=R; shift=3; score=0.683495; ---dmaaCATCTGtkh- ; cor=; Ncor= a 0 0 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 c 0 0 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 g 0 0 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 t 0 0 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0

MA0499.2_shift4 (MYOD1)
; oligos_7nt_mkv4_m8 versus MA0499.2 (MYOD1); m=7/29; ncol2=13; w=13; offset=2; strand=D; shift=4; score=0.681548; ----cwgCACCTGTymy ; cor=; Ncor= a 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 c 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 g 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 t 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0

MA0500.2_rc_shift4 (MYOG_rc)
; oligos_7nt_mkv4_m8 versus MA0500.2_rc (MYOG_rc); m=8/29; ncol2=12; w=12; offset=2; strand=R; shift=4; score=0.680893; ----sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA1467.1_shift5 (ATOH1(var.2))
; oligos_7nt_mkv4_m8 versus MA1467.1 (ATOH1(var.2)); m=9/29; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.653753; -----AACAGCTGTY-- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0

MA0521.1_rc_shift4 (Tcf12_rc)
; oligos_7nt_mkv4_m8 versus MA0521.1_rc (Tcf12_rc); m=10/29; ncol2=11; w=11; offset=2; strand=R; shift=4; score=0.638016; ----cwsCAGCTGYy-- ; cor=; Ncor= a 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 c 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 g 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 t 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0

MA0665.1_rc_shift5 (MSC_rc)
; oligos_7nt_mkv4_m8 versus MA0665.1_rc (MSC_rc); m=11/29; ncol2=10; w=10; offset=3; strand=R; shift=5; score=0.617177; -----AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; oligos_7nt_mkv4_m8 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=12/29; ncol2=12; w=12; offset=2; strand=R; shift=4; score=0.610382; ----rmaCAGGTGtky- ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0

MA1472.1_shift5 (BHLHA15(var.2))
; oligos_7nt_mkv4_m8 versus MA1472.1 (BHLHA15(var.2)); m=13/29; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.602774; -----avCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0

MA0667.1_shift5 (MYF6)
; oligos_7nt_mkv4_m8 versus MA0667.1 (MYF6); m=14/29; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.602533; -----AACArCTGTY-- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 c 0 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 g 0 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 t 0 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0

MA0744.2_shift0 (SCRT2)
; oligos_7nt_mkv4_m8 versus MA0744.2 (SCRT2); m=15/29; ncol2=16; w=14; offset=-2; strand=D; shift=0; score=0.592201; rrwkCAACAGGTggtw- ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0 0

MA0743.2_shift0 (SCRT1)
; oligos_7nt_mkv4_m8 versus MA0743.2 (SCRT1); m=16/29; ncol2=16; w=14; offset=-2; strand=D; shift=0; score=0.590122; wawkCAACAGGTGgtw- ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0 0

MA0796.1_shift4 (TGIF1)
; oligos_7nt_mkv4_m8 versus MA0796.1 (TGIF1); m=17/29; ncol2=12; w=12; offset=2; strand=D; shift=4; score=0.589567; ----TGACAGCTGTCA- ; cor=; Ncor= a 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 c 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 g 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 t 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0

MA1571.1_rc_shift4 (TGIF2LX_rc)
; oligos_7nt_mkv4_m8 versus MA1571.1_rc (TGIF2LX_rc); m=18/29; ncol2=12; w=12; offset=2; strand=R; shift=4; score=0.587697; ----TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0

MA0691.1_shift5 (TFAP4)
; oligos_7nt_mkv4_m8 versus MA0691.1 (TFAP4); m=19/29; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.587653; -----AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA0816.1_shift5 (Ascl2)
; oligos_7nt_mkv4_m8 versus MA0816.1 (Ascl2); m=20/29; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.581425; -----arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA0091.1_rc_shift5 (TAL1::TCF3_rc)
; oligos_7nt_mkv4_m8 versus MA0091.1_rc (TAL1::TCF3_rc); m=21/29; ncol2=12; w=12; offset=3; strand=R; shift=5; score=0.578817; -----AmCAKMTGkTck ; cor=; Ncor= a 0 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 c 0 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 g 0 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 t 0 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0

MA1572.1_rc_shift4 (TGIF2LY_rc)
; oligos_7nt_mkv4_m8 versus MA1572.1_rc (TGIF2LY_rc); m=22/29; ncol2=12; w=12; offset=2; strand=R; shift=4; score=0.574603; ----TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0

MA0797.1_rc_shift4 (TGIF2_rc)
; oligos_7nt_mkv4_m8 versus MA0797.1_rc (TGIF2_rc); m=23/29; ncol2=12; w=12; offset=2; strand=R; shift=4; score=0.574157; ----TGACAsCTGTCA- ; cor=; Ncor= a 0 0 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 c 0 0 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 g 0 0 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 t 0 0 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0

MA1635.1_rc_shift5 (BHLHE22(var.2)_rc)
; oligos_7nt_mkv4_m8 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=24/29; ncol2=10; w=10; offset=3; strand=R; shift=5; score=0.556186; -----csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 c 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 g 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 t 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0

MA1100.2_shift5 (ASCL1)
; oligos_7nt_mkv4_m8 versus MA1100.2 (ASCL1); m=25/29; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.544856; -----rrCAGCTGcy-- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA0820.1_shift5 (FIGLA)
; oligos_7nt_mkv4_m8 versus MA0820.1 (FIGLA); m=26/29; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.516791; -----wmCACCTGkw-- ; cor=; Ncor= a 0 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 c 0 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 g 0 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 t 0 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0

MA0048.2_shift5 (NHLH1)
; oligos_7nt_mkv4_m8 versus MA0048.2 (NHLH1); m=27/29; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.489168; -----cGCAGCTGCk-- ; cor=; Ncor= a 0 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 c 0 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 g 0 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 t 0 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0

MA0774.1_rc_shift9 (MEIS2_rc)
; oligos_7nt_mkv4_m8 versus MA0774.1_rc (MEIS2_rc); m=28/29; ncol2=8; w=8; offset=7; strand=R; shift=9; score=0.440254; ---------sCTGTCAa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 c 0 0 0 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 g 0 0 0 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 t 0 0 0 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0

MA0775.1_rc_shift9 (MEIS3_rc)
; oligos_7nt_mkv4_m8 versus MA0775.1_rc (MEIS3_rc); m=29/29; ncol2=8; w=8; offset=7; strand=R; shift=9; score=0.419943; ---------scTGTCAw ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 c 0 0 0 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 g 0 0 0 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 t 0 0 0 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m11_shift3 ; 31 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m11_shift3 (oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11)
; oligos_8nt_mkv5_m11 (oligos_8nt_mkv5_m11oligos_8nt_mkv5_m11); m=0 (reference); ncol1=13; shift=3; ncol=16; ---ggAACAGCTGagv ; Alignment reference a 0 0 0 156 128 476 623 1 653 7 8 6 4 443 139 172 c 0 0 0 112 148 53 11 648 2 0 627 1 11 74 158 199 g 0 0 0 282 235 120 22 8 2 649 24 1 641 42 212 185 t 0 0 0 110 149 11 4 3 3 4 1 652 4 101 151 104

MA1641.1_shift4 (MYF5)
; oligos_8nt_mkv5_m11 versus MA1641.1 (MYF5); m=1/30; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.832474; ----gvaCAGCTGtbc ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0

MA1619.1_shift4 (Ptf1a(var.2))
; oligos_8nt_mkv5_m11 versus MA1619.1 (Ptf1a(var.2)); m=2/30; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.828965; ----rmaCAGCTGtky ; cor=; Ncor= a 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 c 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 g 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 t 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0

MA0832.1_shift3 (Tcf21)
; oligos_8nt_mkv5_m11 versus MA0832.1 (Tcf21); m=3/30; ncol2=14; w=13; offset=0; strand=D; shift=3; score=0.801316; ---ryAACAGCTGTTr ; cor=; Ncor= a 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 c 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 g 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 t 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0

MA0500.2_rc_shift4 (MYOG_rc)
; oligos_8nt_mkv5_m11 versus MA0500.2_rc (MYOG_rc); m=4/30; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.800073; ----sarCAGCTGyts ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0

MA0499.2_rc_shift3 (MYOD1_rc)
; oligos_8nt_mkv5_m11 versus MA0499.2_rc (MYOD1_rc); m=5/30; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.79491; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0

MA0521.1_shift5 (Tcf12)
; oligos_8nt_mkv5_m11 versus MA0521.1 (Tcf12); m=6/30; ncol2=11; w=11; offset=2; strand=D; shift=5; score=0.78611; -----rRCAGCTGswg ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0

MA1618.1_rc_shift3 (Ptf1a_rc)
; oligos_8nt_mkv5_m11 versus MA1618.1_rc (Ptf1a_rc); m=7/30; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.766195; ---dmaaCATCTGtkh ; cor=; Ncor= a 0 0 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 c 0 0 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 g 0 0 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 t 0 0 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0

MA1485.1_rc_shift3 (FERD3L_rc)
; oligos_8nt_mkv5_m11 versus MA1485.1_rc (FERD3L_rc); m=8/30; ncol2=14; w=13; offset=0; strand=R; shift=3; score=0.764517; ---GTrACAGCTGkyr ; cor=; Ncor= a 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 c 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 g 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 t 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0

MA1593.1_shift4 (ZNF317)
; oligos_8nt_mkv5_m11 versus MA1593.1 (ZNF317); m=9/30; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.746672; ----wrACAGCAGAyw ; cor=; Ncor= a 0 0 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 c 0 0 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 g 0 0 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 t 0 0 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0

MA0745.2_rc_shift3 (SNAI2_rc)
; oligos_8nt_mkv5_m11 versus MA0745.2_rc (SNAI2_rc); m=10/30; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.718878; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0

MA0691.1_shift5 (TFAP4)
; oligos_8nt_mkv5_m11 versus MA0691.1 (TFAP4); m=11/30; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.717249; -----AwCAGCTGwT- ; cor=; Ncor= a 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 c 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 g 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 t 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; oligos_8nt_mkv5_m11 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=12/30; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.701163; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0

MA1467.1_shift5 (ATOH1(var.2))
; oligos_8nt_mkv5_m11 versus MA1467.1 (ATOH1(var.2)); m=13/30; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.686656; -----AACAGCTGTY- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0

MA1621.1_rc_shift3 (Rbpjl_rc)
; oligos_8nt_mkv5_m11 versus MA1621.1_rc (Rbpjl_rc); m=14/30; ncol2=14; w=13; offset=0; strand=R; shift=3; score=0.684502; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0

MA0665.1_rc_shift5 (MSC_rc)
; oligos_8nt_mkv5_m11 versus MA0665.1_rc (MSC_rc); m=15/30; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.674048; -----AACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0

MA1472.1_rc_shift5 (BHLHA15(var.2)_rc)
; oligos_8nt_mkv5_m11 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=16/30; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.670438; -----rrCAGCTGbt- ; cor=; Ncor= a 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 c 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 g 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 t 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0

MA0091.1_shift3 (TAL1::TCF3)
; oligos_8nt_mkv5_m11 versus MA0091.1 (TAL1::TCF3); m=17/30; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.662917; ---mgAmCAKMTGkT- ; cor=; Ncor= a 0 0 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 c 0 0 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 g 0 0 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 t 0 0 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0

MA0816.1_shift5 (Ascl2)
; oligos_8nt_mkv5_m11 versus MA0816.1 (Ascl2); m=18/30; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.658823; -----arCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 c 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 g 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 t 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0

MA1635.1_shift5 (BHLHE22(var.2))
; oligos_8nt_mkv5_m11 versus MA1635.1 (BHLHE22(var.2)); m=19/30; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.652545; -----csCAGCTGsg- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 c 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 g 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 t 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0

MA0667.1_shift5 (MYF6)
; oligos_8nt_mkv5_m11 versus MA0667.1 (MYF6); m=20/30; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.63967; -----AACArCTGTY- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 c 0 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 g 0 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 t 0 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0

MA0698.1_rc_shift4 (ZBTB18_rc)
; oligos_8nt_mkv5_m11 versus MA0698.1_rc (ZBTB18_rc); m=21/30; ncol2=13; w=12; offset=1; strand=R; shift=4; score=0.619787; ----vmACATCTGGat ; cor=; Ncor= a 0 0 0 0 4027.0 8140.0 13670.0 1.0 13670.0 297.0 6.0 206.0 8.0 60.0 13670.0 3319.0 c 0 0 0 0 3876.0 5530.0 36.0 13670.0 94.0 278.0 13670.0 33.0 3.0 1899.0 5212.0 2535.0 g 0 0 0 0 4042.0 177.0 314.0 1.0 15.0 1048.0 245.0 5.0 13670.0 13670.0 1937.0 753.0 t 0 0 0 0 1725.0 210.0 48.0 3.0 14.0 13670.0 3.0 13670.0 21.0 3618.0 1177.0 7064.0

MA1100.2_rc_shift5 (ASCL1_rc)
; oligos_8nt_mkv5_m11 versus MA1100.2_rc (ASCL1_rc); m=22/30; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.616516; -----rgCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 c 0 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 g 0 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 t 0 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0

MA1123.2_rc_shift4 (TWIST1_rc)
; oligos_8nt_mkv5_m11 versus MA1123.2_rc (TWIST1_rc); m=23/30; ncol2=13; w=12; offset=1; strand=R; shift=4; score=0.605024; ----avaCATCTGGww ; cor=; Ncor= a 0 0 0 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 c 0 0 0 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 g 0 0 0 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 t 0 0 0 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0

MA0820.1_rc_shift5 (FIGLA_rc)
; oligos_8nt_mkv5_m11 versus MA0820.1_rc (FIGLA_rc); m=24/30; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.598501; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0

MA1655.1_shift2 (ZNF341)
; oligos_8nt_mkv5_m11 versus MA1655.1 (ZNF341); m=25/30; ncol2=12; w=11; offset=-1; strand=D; shift=2; score=0.597363; --grGAACAGCcas-- ; cor=; Ncor= a 0 0 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 c 0 0 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 g 0 0 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 t 0 0 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0

MA0048.2_rc_shift5 (NHLH1_rc)
; oligos_8nt_mkv5_m11 versus MA0048.2_rc (NHLH1_rc); m=26/30; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.586177; -----mGCAGCTGCg- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0

MA0744.2_shift0 (SCRT2)
; oligos_8nt_mkv5_m11 versus MA0744.2 (SCRT2); m=27/30; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.58101; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0

MA0743.2_shift0 (SCRT1)
; oligos_8nt_mkv5_m11 versus MA0743.2 (SCRT1); m=28/30; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.573771; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0

MA1559.1_shift5 (SNAI3)
; oligos_8nt_mkv5_m11 versus MA1559.1 (SNAI3); m=29/30; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.551021; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0

MA1647.1_rc_shift1 (PRDM4_rc)
; oligos_8nt_mkv5_m11 versus MA1647.1_rc (PRDM4_rc); m=30/30; ncol2=11; w=9; offset=-2; strand=R; shift=1; score=0.42692; -twGAAACAGhy---- ; cor=; Ncor= a 0 1799.0 2962.0 292.0 6811.0 6288.0 6889.0 39.0 5543.0 154.0 2123.0 1559.0 0 0 0 0 c 0 1344.0 726.0 129.0 111.0 393.0 82.0 6813.0 566.0 316.0 2079.0 2553.0 0 0 0 0 g 0 1532.0 1456.0 6353.0 138.0 405.0 137.0 110.0 286.0 6504.0 1012.0 1163.0 0 0 0 0 t 0 2580.0 2111.0 481.0 195.0 169.0 147.0 293.0 860.0 281.0 2041.0 1980.0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m32_shift3 ; 36 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m32_shift3 (dyads_m32dyads_m32)
; dyads_m32 (dyads_m32dyads_m32); m=0 (reference); ncol1=14; shift=3; ncol=17; ---rsAACAGsTGCTss ; Alignment reference a 0 0 0 82 63 282 280 0 316 1 5 1 0 3 30 53 53 c 0 0 0 60 110 12 3 317 0 3 118 0 0 282 19 86 98 g 0 0 0 127 109 22 34 0 0 311 184 1 317 16 9 123 92 t 0 0 0 48 35 1 0 0 1 2 10 315 0 16 259 55 74

MA0499.2_rc_shift3 (MYOD1_rc)
; dyads_m32 versus MA0499.2_rc (MYOD1_rc); m=1/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.828106; ---rkrACAGGTGcwg- ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0

MA0832.1_shift3 (Tcf21)
; dyads_m32 versus MA0832.1 (Tcf21); m=2/35; ncol2=14; w=14; offset=0; strand=D; shift=3; score=0.820634; ---ryAACAGCTGTTry ; cor=; Ncor= a 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0

MA1621.1_rc_shift3 (Rbpjl_rc)
; dyads_m32 versus MA1621.1_rc (Rbpjl_rc); m=3/35; ncol2=14; w=14; offset=0; strand=R; shift=3; score=0.800779; ---grsaCAGGTGtkbs ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0

MA0745.2_rc_shift3 (SNAI2_rc)
; dyads_m32 versus MA0745.2_rc (SNAI2_rc); m=4/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.779551; ---rykACAGGTGcrt- ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0

MA0830.2_rc_shift3 (TCF4_rc)
; dyads_m32 versus MA0830.2_rc (TCF4_rc); m=5/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.728885; ---ssggCAGGTGccg- ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0

MA1485.1_rc_shift3 (FERD3L_rc)
; dyads_m32 versus MA1485.1_rc (FERD3L_rc); m=6/35; ncol2=14; w=14; offset=0; strand=R; shift=3; score=0.710486; ---GTrACAGCTGkyrC ; cor=; Ncor= a 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0

MA1631.1_rc_shift3 (ASCL1(var.2)_rc)
; dyads_m32 versus MA1631.1_rc (ASCL1(var.2)_rc); m=7/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.710171; ---gsrGCAGGTGchg- ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0

MA1618.1_shift4 (Ptf1a)
; dyads_m32 versus MA1618.1 (Ptf1a); m=8/35; ncol2=13; w=13; offset=1; strand=D; shift=4; score=0.697112; ----dmaCAGATGttkh ; cor=; Ncor= a 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 c 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 g 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 t 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0

MA0500.2_rc_shift4 (MYOG_rc)
; dyads_m32 versus MA0500.2_rc (MYOG_rc); m=9/35; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.695768; ----sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA0521.1_shift5 (Tcf12)
; dyads_m32 versus MA0521.1 (Tcf12); m=10/35; ncol2=11; w=11; offset=2; strand=D; shift=5; score=0.684148; -----rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; dyads_m32 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=11/35; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.68211; ----rmaCAGGTGtky- ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0

MA1641.1_shift4 (MYF5)
; dyads_m32 versus MA1641.1 (MYF5); m=12/35; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.661923; ----gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0

MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)
; dyads_m32 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=13/35; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.658495; ----rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0

MA0091.1_rc_shift5 (TAL1::TCF3_rc)
; dyads_m32 versus MA0091.1_rc (TAL1::TCF3_rc); m=14/35; ncol2=12; w=12; offset=2; strand=R; shift=5; score=0.654505; -----AmCAKMTGkTck ; cor=; Ncor= a 0 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 c 0 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 g 0 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 t 0 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0

MA0816.1_shift5 (Ascl2)
; dyads_m32 versus MA0816.1 (Ascl2); m=15/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.621556; -----arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA0744.2_shift0 (SCRT2)
; dyads_m32 versus MA0744.2 (SCRT2); m=16/35; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.615079; rrwkCAACAGGTggtw- ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0 0

MA0743.2_shift0 (SCRT1)
; dyads_m32 versus MA0743.2 (SCRT1); m=17/35; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.609334; wawkCAACAGGTGgtw- ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0 0

MA1105.2_shift3 (GRHL2)
; dyads_m32 versus MA1105.2 (GRHL2); m=18/35; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.608711; ---arAACAGGTTtk-- ; cor=; Ncor= a 0 0 0 14483.0 17842.0 36467.0 37065.0 503.0 34024.0 2824.0 642.0 1878.0 1752.0 7061.0 8868.0 0 0 c 0 0 0 9741.0 6996.0 1147.0 712.0 40446.0 1543.0 581.0 987.0 2331.0 2000.0 9341.0 8528.0 0 0 g 0 0 0 9161.0 10776.0 2646.0 2841.0 609.0 485.0 37226.0 39624.0 748.0 1220.0 7961.0 10536.0 0 0 t 0 0 0 8493.0 6264.0 1618.0 1260.0 320.0 5826.0 1247.0 625.0 36921.0 36906.0 17515.0 13946.0 0 0

MA0820.1_rc_shift5 (FIGLA_rc)
; dyads_m32 versus MA0820.1_rc (FIGLA_rc); m=19/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.604038; -----wmCAGGTGkw-- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0

MA0665.1_rc_shift5 (MSC_rc)
; dyads_m32 versus MA0665.1_rc (MSC_rc); m=20/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.603728; -----AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0

MA1559.1_shift5 (SNAI3)
; dyads_m32 versus MA1559.1 (SNAI3); m=21/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.603605; -----arCAGGTGya-- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0

MA0667.1_rc_shift5 (MYF6_rc)
; dyads_m32 versus MA0667.1_rc (MYF6_rc); m=22/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.590803; -----RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0

MA1472.1_rc_shift5 (BHLHA15(var.2)_rc)
; dyads_m32 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=23/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.585255; -----rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0

MA0691.1_shift5 (TFAP4)
; dyads_m32 versus MA0691.1 (TFAP4); m=24/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.584979; -----AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA1100.2_shift5 (ASCL1)
; dyads_m32 versus MA1100.2 (ASCL1); m=25/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.576823; -----rrCAGCTGcy-- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA0103.3_rc_shift4 (ZEB1_rc)
; dyads_m32 versus MA0103.3_rc (ZEB1_rc); m=26/35; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.572607; ----sssCAGGTGss-- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0 0

MA1467.1_shift5 (ATOH1(var.2))
; dyads_m32 versus MA1467.1 (ATOH1(var.2)); m=27/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.571019; -----AACAGCTGTY-- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0

MA1558.1_shift5 (SNAI1)
; dyads_m32 versus MA1558.1 (SNAI1); m=28/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.562735; -----drCAGGTGyr-- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0

MA1648.1_rc_shift4 (TCF12(var.2)_rc)
; dyads_m32 versus MA1648.1_rc (TCF12(var.2)_rc); m=29/35; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.554269; ----srGCAGGTGss-- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0

MA0048.2_rc_shift5 (NHLH1_rc)
; dyads_m32 versus MA0048.2_rc (NHLH1_rc); m=30/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.538757; -----mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA1635.1_shift5 (BHLHE22(var.2))
; dyads_m32 versus MA1635.1 (BHLHE22(var.2)); m=31/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.532986; -----csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA1570.1_shift5 (TFAP4(var.2))
; dyads_m32 versus MA1570.1 (TFAP4(var.2)); m=32/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.508704; -----ahCAyrTGkt-- ; cor=; Ncor= a 0 0 0 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 0 c 0 0 0 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 0 g 0 0 0 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 0 t 0 0 0 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0 0

MA1647.1_rc_shift1 (PRDM4_rc)
; dyads_m32 versus MA1647.1_rc (PRDM4_rc); m=33/35; ncol2=11; w=9; offset=-2; strand=R; shift=1; score=0.410198; -twGAAACAGhy----- ; cor=; Ncor= a 0 1799.0 2962.0 292.0 6811.0 6288.0 6889.0 39.0 5543.0 154.0 2123.0 1559.0 0 0 0 0 0 c 0 1344.0 726.0 129.0 111.0 393.0 82.0 6813.0 566.0 316.0 2079.0 2553.0 0 0 0 0 0 g 0 1532.0 1456.0 6353.0 138.0 405.0 137.0 110.0 286.0 6504.0 1012.0 1163.0 0 0 0 0 0 t 0 2580.0 2111.0 481.0 195.0 169.0 147.0 293.0 860.0 281.0 2041.0 1980.0 0 0 0 0 0

MA0622.1_rc_shift6 (Mlxip_rc)
; dyads_m32 versus MA0622.1_rc (Mlxip_rc); m=34/35; ncol2=8; w=8; offset=3; strand=R; shift=6; score=0.404496; ------mCACGTGv--- ; cor=; Ncor= a 0 0 0 0 0 0 499.0 0.0 999.0 0.0 0.0 0.0 0.0 263.0 0 0 0 c 0 0 0 0 0 0 250.0 999.0 0.0 999.0 0.0 0.0 0.0 421.0 0 0 0 g 0 0 0 0 0 0 63.0 0.0 0.0 0.0 999.0 0.0 999.0 263.0 0 0 0 t 0 0 0 0 0 0 188.0 0.0 0.0 0.0 0.0 999.0 0.0 53.0 0 0 0

MA0480.1_rc_shift1 (Foxo1_rc)
; dyads_m32 versus MA0480.1_rc (Foxo1_rc); m=35/35; ncol2=11; w=9; offset=-2; strand=R; shift=1; score=0.401638; -wGTAAACArsa----- ; cor=; Ncor= a 0 774.0 483.0 462.0 2203.0 2490.0 2490.0 0.0 2490.0 788.0 332.0 1267.0 0 0 0 0 0 c 0 71.0 0.0 0.0 287.0 0.0 0.0 2490.0 0.0 209.0 752.0 478.0 0 0 0 0 0 g 0 573.0 2007.0 157.0 0.0 0.0 0.0 0.0 0.0 1406.0 1279.0 277.0 0 0 0 0 0 t 0 1072.0 0.0 1871.0 0.0 0.0 0.0 0.0 0.0 87.0 127.0 468.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m7_shift2 ; 51 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m7_shift2 (oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7)
; oligos_8nt_mkv5_m7 (oligos_8nt_mkv5_m7oligos_8nt_mkv5_m7); m=0 (reference); ncol1=14; shift=2; ncol=19; --bsACASCTGTCAsy--- ; Alignment reference a 0 0 46 68 225 1 310 5 1 2 0 7 1 279 29 61 0 0 0 c 0 0 98 107 41 310 1 218 306 1 1 18 293 11 122 107 0 0 0 g 0 0 85 88 35 1 0 88 1 0 311 6 8 6 88 59 0 0 0 t 0 0 83 49 11 0 1 1 4 309 0 281 10 16 73 85 0 0 0

MA0499.2_shift2 (MYOD1)
; oligos_8nt_mkv5_m7 versus MA0499.2 (MYOD1); m=1/50; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.812926; --cwgCACCTGTymy---- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0 0

MA0745.2_shift2 (SNAI2)
; oligos_8nt_mkv5_m7 versus MA0745.2 (SNAI2); m=2/50; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.794564; --aygCACCTGTmry---- ; cor=; Ncor= a 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 0 0 c 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 0 0 g 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 0 0 t 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0 0 0

MA0783.1_rc_shift2 (PKNOX2_rc)
; oligos_8nt_mkv5_m7 versus MA0783.1_rc (PKNOX2_rc); m=3/50; ncol2=12; w=12; offset=0; strand=R; shift=2; score=0.775407; --TGACAsCTGTCA----- ; cor=; Ncor= a 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 0 0 c 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 0 0 g 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 0 0 t 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0 0 0

MA1621.1_shift1 (Rbpjl)
; oligos_8nt_mkv5_m7 versus MA1621.1 (Rbpjl); m=4/50; ncol2=14; w=13; offset=-1; strand=D; shift=1; score=0.764412; -svmaCACCTGtsyc---- ; cor=; Ncor= a 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 0 c 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 0 g 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 0 t 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0 0

MA0797.1_rc_shift2 (TGIF2_rc)
; oligos_8nt_mkv5_m7 versus MA0797.1_rc (TGIF2_rc); m=5/50; ncol2=12; w=12; offset=0; strand=R; shift=2; score=0.755597; --TGACAsCTGTCA----- ; cor=; Ncor= a 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 0 0 c 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 0 0 g 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 0 0 t 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0 0 0

MA1620.1_shift2 (Ptf1a(var.3))
; oligos_8nt_mkv5_m7 versus MA1620.1 (Ptf1a(var.3)); m=6/50; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.749427; --rmaCACCTGtky----- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0 0 0

MA0796.1_rc_shift2 (TGIF1_rc)
; oligos_8nt_mkv5_m7 versus MA0796.1_rc (TGIF1_rc); m=7/50; ncol2=12; w=12; offset=0; strand=R; shift=2; score=0.744719; --TGACAGCTGTCA----- ; cor=; Ncor= a 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 0 0 c 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 0 0 g 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 0 0 t 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0 0 0

MA1571.1_shift2 (TGIF2LX)
; oligos_8nt_mkv5_m7 versus MA1571.1 (TGIF2LX); m=8/50; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.741656; --TGACAgcTGTCA----- ; cor=; Ncor= a 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 0 0 0 c 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 0 0 0 g 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 0 0 0 t 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0 0 0 0

MA1572.1_shift2 (TGIF2LY)
; oligos_8nt_mkv5_m7 versus MA1572.1 (TGIF2LY); m=9/50; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.734883; --TGACAgcTGTCA----- ; cor=; Ncor= a 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 0 0 c 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 0 0 g 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 0 0 t 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0 0 0

MA0830.2_shift2 (TCF4)
; oligos_8nt_mkv5_m7 versus MA0830.2 (TCF4); m=10/50; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.699734; --cggCACCTGccss---- ; cor=; Ncor= a 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 0 0 c 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 0 0 g 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 0 0 t 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0 0 0

MA1631.1_shift2 (ASCL1(var.2))
; oligos_8nt_mkv5_m7 versus MA1631.1 (ASCL1(var.2)); m=11/50; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.693334; --cdgCACCTGCysc---- ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0 0

MA1641.1_rc_shift2 (MYF5_rc)
; oligos_8nt_mkv5_m7 versus MA1641.1_rc (MYF5_rc); m=12/50; ncol2=12; w=12; offset=0; strand=R; shift=2; score=0.686653; --gvaCAGCTGtbc----- ; cor=; Ncor= a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 0 0 c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 0 0 g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 0 0 t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0 0 0

MA1485.1_shift1 (FERD3L)
; oligos_8nt_mkv5_m7 versus MA1485.1 (FERD3L); m=13/50; ncol2=14; w=13; offset=-1; strand=D; shift=1; score=0.682063; -GyrmCAGCTGTyAC---- ; cor=; Ncor= a 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 0 0 c 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 0 0 g 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 0 0 t 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; oligos_8nt_mkv5_m7 versus MA1619.1 (Ptf1a(var.2)); m=14/50; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.676565; --rmaCAGCTGtky----- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0

MA0521.1_rc_shift2 (Tcf12_rc)
; oligos_8nt_mkv5_m7 versus MA0521.1_rc (Tcf12_rc); m=15/50; ncol2=11; w=11; offset=0; strand=R; shift=2; score= 0.6521; --cwsCAGCTGYy------ ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0

MA0832.1_rc_shift1 (Tcf21_rc)
; oligos_8nt_mkv5_m7 versus MA0832.1_rc (Tcf21_rc); m=16/50; ncol2=14; w=13; offset=-1; strand=R; shift=1; score= 0.6251; -ryAACAGCTGTTry---- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0

MA1467.1_shift3 (ATOH1(var.2))
; oligos_8nt_mkv5_m7 versus MA1467.1 (ATOH1(var.2)); m=17/50; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.619529; ---AACAGCTGTY------ ; cor=; Ncor= a 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0 c 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0 g 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0 t 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0

MA0500.2_rc_shift2 (MYOG_rc)
; oligos_8nt_mkv5_m7 versus MA0500.2_rc (MYOG_rc); m=18/50; ncol2=12; w=12; offset=0; strand=R; shift=2; score=0.610096; --sarCAGCTGyts----- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0

MA0820.1_shift3 (FIGLA)
; oligos_8nt_mkv5_m7 versus MA0820.1 (FIGLA); m=19/50; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.606641; ---wmCACCTGkw------ ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0 0

MA0103.3_shift3 (ZEB1)
; oligos_8nt_mkv5_m7 versus MA0103.3 (ZEB1); m=20/50; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.602253; ---ssCACCTGsss----- ; cor=; Ncor= a 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 0 0 c 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 0 0 g 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 0 0 t 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0 0 0

MA1558.1_rc_shift3 (SNAI1_rc)
; oligos_8nt_mkv5_m7 versus MA1558.1_rc (SNAI1_rc); m=21/50; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.600946; ---yrCACCTGyh------ ; cor=; Ncor= a 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 0 0 c 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 0 0 g 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 0 0 t 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0 0 0

MA1618.1_rc_shift1 (Ptf1a_rc)
; oligos_8nt_mkv5_m7 versus MA1618.1_rc (Ptf1a_rc); m=22/50; ncol2=13; w=12; offset=-1; strand=R; shift=1; score=0.598176; -dmaaCATCTGtkh----- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0 0 0

MA1559.1_rc_shift3 (SNAI3_rc)
; oligos_8nt_mkv5_m7 versus MA1559.1_rc (SNAI3_rc); m=23/50; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.596898; ---trCACCTGyt------ ; cor=; Ncor= a 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 0 0 c 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 0 0 g 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 0 0 t 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0 0 0

MA0667.1_shift3 (MYF6)
; oligos_8nt_mkv5_m7 versus MA0667.1 (MYF6); m=24/50; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.573261; ---AACArCTGTY------ ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 0 0 c 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 0 0 g 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 0 0 t 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0 0 0

MA1472.1_shift3 (BHLHA15(var.2))
; oligos_8nt_mkv5_m7 versus MA1472.1 (BHLHA15(var.2)); m=25/50; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.57011; ---avCAGCTGyy------ ; cor=; Ncor= a 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 0 c 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 0 g 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 0 t 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0 0

MA0665.1_shift3 (MSC)
; oligos_8nt_mkv5_m7 versus MA0665.1 (MSC); m=26/50; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.559248; ---AACAGCTGTT------ ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; oligos_8nt_mkv5_m7 versus MA1100.2_rc (ASCL1_rc); m=27/50; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.552922; ---rgCAGCTGyy------ ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0

MA1648.1_shift3 (TCF12(var.2))
; oligos_8nt_mkv5_m7 versus MA1648.1 (TCF12(var.2)); m=28/50; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.550601; ---ssCACCTGCys----- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0 0 0

MA0774.1_rc_shift7 (MEIS2_rc)
; oligos_8nt_mkv5_m7 versus MA0774.1_rc (MEIS2_rc); m=29/50; ncol2=8; w=8; offset=5; strand=R; shift=7; score=0.538524; -------sCTGTCAa---- ; cor=; Ncor= a 0 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 0 0 0 c 0 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 0 0 0 g 0 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 0 0 0 t 0 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0 0 0 0

MA1635.1_rc_shift3 (BHLHE22(var.2)_rc)
; oligos_8nt_mkv5_m7 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=30/50; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.531427; ---csCAGCTGsg------ ; cor=; Ncor= a 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0 c 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0 g 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0 t 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0

MA0775.1_rc_shift7 (MEIS3_rc)
; oligos_8nt_mkv5_m7 versus MA0775.1_rc (MEIS3_rc); m=31/50; ncol2=8; w=8; offset=5; strand=R; shift=7; score=0.528581; -------scTGTCAw---- ; cor=; Ncor= a 0 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 0 0 0 c 0 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 0 0 0 g 0 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 0 0 0 t 0 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0 0 0 0

MA0816.1_shift3 (Ascl2)
; oligos_8nt_mkv5_m7 versus MA0816.1 (Ascl2); m=32/50; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.526779; ---arCAGCTGyy------ ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0

MA0691.1_shift3 (TFAP4)
; oligos_8nt_mkv5_m7 versus MA0691.1 (TFAP4); m=33/50; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.516907; ---AwCAGCTGwT------ ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0 0 0

MA0819.1_shift3 (CLOCK)
; oligos_8nt_mkv5_m7 versus MA0819.1 (CLOCK); m=34/50; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.516049; ---aACACGTGty------ ; cor=; Ncor= a 0 0 0 226.0 429.0 11.0 429.0 16.0 40.0 3.0 0.0 1.0 89.0 0 0 0 0 0 0 c 0 0 0 35.0 85.0 429.0 5.0 429.0 0.0 5.0 3.0 152.0 128.0 0 0 0 0 0 0 g 0 0 0 93.0 89.0 2.0 15.0 0.0 429.0 5.0 429.0 110.0 39.0 0 0 0 0 0 0 t 0 0 0 75.0 13.0 2.0 0.0 28.0 0.0 429.0 9.0 429.0 174.0 0 0 0 0 0 0

MA0649.1_rc_shift3 (HEY2_rc)
; oligos_8nt_mkv5_m7 versus MA0649.1_rc (HEY2_rc); m=35/50; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.513387; ---grCACGTGyC------ ; cor=; Ncor= a 0 0 0 264.0 753.0 30.0 1800.0 0.0 0.0 0.0 58.0 224.0 101.0 0 0 0 0 0 0 c 0 0 0 382.0 128.0 1800.0 0.0 1800.0 0.0 128.0 83.0 620.0 1800.0 0 0 0 0 0 0 g 0 0 0 869.0 1047.0 34.0 120.0 72.0 1800.0 0.0 1800.0 305.0 99.0 0 0 0 0 0 0 t 0 0 0 285.0 50.0 0.0 36.0 27.0 7.0 1800.0 84.0 651.0 107.0 0 0 0 0 0 0

MA0807.1_rc_shift2 (TBX5_rc)
; oligos_8nt_mkv5_m7 versus MA0807.1_rc (TBX5_rc); m=36/50; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.511654; --TmACACCT--------- ; cor=; Ncor= a 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 0 0 0 c 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 0 0 0 g 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 0 0 0 t 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0 0 0 0

MA0100.3_shift3 (MYB)
; oligos_8nt_mkv5_m7 versus MA0100.3 (MYB); m=37/50; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.508186; ---mbCAACTGhm------ ; cor=; Ncor= a 0 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 0 0 0 0 c 0 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 0 0 0 0 g 0 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 0 0 0 0 t 0 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0 0 0 0 0

MA0806.1_rc_shift2 (TBX4_rc)
; oligos_8nt_mkv5_m7 versus MA0806.1_rc (TBX4_rc); m=38/50; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.506038; --TcACACCT--------- ; cor=; Ncor= a 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 0 0 0 0 0 c 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 0 0 0 0 0 g 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 0 0 0 0 0 t 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0 0 0 0 0 0

MA0803.1_rc_shift2 (TBX15_rc)
; oligos_8nt_mkv5_m7 versus MA0803.1_rc (TBX15_rc); m=39/50; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.496939; --TCACACCT--------- ; cor=; Ncor= a 0 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 0 0 0 0 0 0 0 0 c 0 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 0 0 0 0 0 0 0 0 g 0 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 0 0 0 0 0 0 0 0 t 0 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0 0 0 0 0 0 0 0 0

MA0805.1_rc_shift2 (TBX1_rc)
; oligos_8nt_mkv5_m7 versus MA0805.1_rc (TBX1_rc); m=40/50; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.485399; --TCACACCT--------- ; cor=; Ncor= a 0 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 0 0 0 0 0 0 c 0 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 0 0 0 0 0 0 g 0 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 0 0 0 0 0 0 t 0 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0 0 0 0 0 0 0

MA1114.1_rc_shift4 (PBX3_rc)
; oligos_8nt_mkv5_m7 versus MA1114.1_rc (PBX3_rc); m=41/50; ncol2=17; w=12; offset=2; strand=R; shift=4; score=0.477055; ----sygcCTGTCACTCAv ; cor=; Ncor= a 0 0 0 0 1508.0 1465.0 1525.0 683.0 549.0 376.0 138.0 145.0 83.0 6290.0 969.0 256.0 160.0 5697.0 1924.0 c 0 0 0 0 2217.0 2068.0 1591.0 4077.0 5691.0 425.0 209.0 604.0 6550.0 285.0 4929.0 214.0 6406.0 503.0 1928.0 g 0 0 0 0 1801.0 1619.0 2654.0 1377.0 412.0 129.0 6524.0 108.0 242.0 199.0 788.0 125.0 227.0 225.0 1849.0 t 0 0 0 0 1495.0 1869.0 1251.0 884.0 369.0 6091.0 150.0 6164.0 146.0 247.0 335.0 6426.0 228.0 596.0 1320.0

MA0801.1_rc_shift2 (MGA_rc)
; oligos_8nt_mkv5_m7 versus MA0801.1_rc (MGA_rc); m=42/50; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.474438; --TCACACCT--------- ; cor=; Ncor= a 0 0 274.0 6465.0 30489.0 11.0 30489.0 104.0 1929.0 4160.0 0 0 0 0 0 0 0 0 0 c 0 0 920.0 30489.0 381.0 30489.0 96.0 30489.0 30489.0 8873.0 0 0 0 0 0 0 0 0 0 g 0 0 110.0 1753.0 3089.0 1.0 3534.0 509.0 3737.0 1151.0 0 0 0 0 0 0 0 0 0 t 0 0 30489.0 689.0 1042.0 14.0 12.0 16.0 4310.0 30489.0 0 0 0 0 0 0 0 0 0

MA0782.2_rc_shift5 (PKNOX1_rc)
; oligos_8nt_mkv5_m7 versus MA0782.2_rc (PKNOX1_rc); m=43/50; ncol2=15; w=11; offset=3; strand=R; shift=5; score=0.464251; -----yagCTGTCAcTCAw ; cor=; Ncor= a 0 0 0 0 0 9877.0 12900.0 6042.0 5092.0 2629.0 886.0 720.0 691.0 36918.0 7333.0 1196.0 1043.0 29794.0 10355.0 c 0 0 0 0 0 10296.0 9060.0 9128.0 27367.0 2408.0 580.0 2459.0 37713.0 1027.0 26182.0 1330.0 36106.0 3322.0 9535.0 g 0 0 0 0 0 9268.0 9386.0 16341.0 4759.0 944.0 37846.0 410.0 1004.0 878.0 4123.0 678.0 1160.0 1625.0 9828.0 t 0 0 0 0 0 10522.0 8617.0 8452.0 2745.0 33982.0 651.0 36374.0 555.0 1140.0 2325.0 36759.0 1654.0 5222.0 10245.0

MA0498.2_rc_shift8 (MEIS1_rc)
; oligos_8nt_mkv5_m7 versus MA0498.2_rc (MEIS1_rc); m=44/50; ncol2=7; w=7; offset=6; strand=R; shift=8; score=0.457995; --------cTGTCAw---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 15106.0 3861.0 1155.0 0.0 0.0 77159.0 24921.0 0 0 0 0 c 0 0 0 0 0 0 0 0 29965.0 9263.0 0.0 672.0 77159.0 3174.0 9714.0 0 0 0 0 g 0 0 0 0 0 0 0 0 14864.0 0.0 77159.0 2903.0 1249.0 5575.0 18797.0 0 0 0 0 t 0 0 0 0 0 0 0 0 17224.0 77159.0 0.0 77159.0 0.0 8690.0 23727.0 0 0 0 0

MA1567.1_rc_shift1 (TBX6_rc)
; oligos_8nt_mkv5_m7 versus MA1567.1_rc (TBX6_rc); m=45/50; ncol2=10; w=9; offset=-1; strand=R; shift=1; score=0.457277; -tTmACACcty-------- ; cor=; Ncor= a 0 2330.0 713.0 5964.0 11087.0 12.0 11087.0 0.0 1058.0 2157.0 2456.0 0 0 0 0 0 0 0 0 c 0 2141.0 2251.0 11087.0 320.0 11087.0 0.0 11087.0 11087.0 3347.0 4003.0 0 0 0 0 0 0 0 0 g 0 2066.0 652.0 4876.0 3053.0 0.0 1002.0 63.0 2913.0 1173.0 1630.0 0 0 0 0 0 0 0 0 t 0 4550.0 11087.0 1430.0 552.0 14.0 44.0 58.0 1882.0 11087.0 2998.0 0 0 0 0 0 0 0 0

MA1566.1_rc_shift1 (TBX3_rc)
; oligos_8nt_mkv5_m7 versus MA1566.1_rc (TBX3_rc); m=46/50; ncol2=10; w=9; offset=-1; strand=R; shift=1; score=0.449394; -ttsACACcty-------- ; cor=; Ncor= a 0 578.0 484.0 1112.0 2544.0 0.0 2544.0 0.0 302.0 760.0 497.0 0 0 0 0 0 0 0 0 c 0 620.0 947.0 2544.0 155.0 2544.0 0.0 2544.0 2544.0 1207.0 1003.0 0 0 0 0 0 0 0 0 g 0 586.0 410.0 1471.0 634.0 0.0 735.0 45.0 862.0 481.0 399.0 0 0 0 0 0 0 0 0 t 0 760.0 2544.0 170.0 115.0 0.0 16.0 6.0 427.0 2544.0 644.0 0 0 0 0 0 0 0 0

MA0690.1_rc_shift1 (TBX21_rc)
; oligos_8nt_mkv5_m7 versus MA0690.1_rc (TBX21_rc); m=47/50; ncol2=10; w=9; offset=-1; strand=R; shift=1; score=0.431314; -TTCACACCTt-------- ; cor=; Ncor= a 0 1287.0 0.0 364.0 4395.0 2.0 4395.0 33.0 398.0 146.0 872.0 0 0 0 0 0 0 0 0 c 0 317.0 38.0 4395.0 34.0 4395.0 16.0 4395.0 4395.0 359.0 937.0 0 0 0 0 0 0 0 0 g 0 441.0 0.0 126.0 331.0 0.0 180.0 17.0 239.0 30.0 263.0 0 0 0 0 0 0 0 0 t 0 4395.0 4395.0 80.0 185.0 1.0 6.0 2.0 612.0 4395.0 2322.0 0 0 0 0 0 0 0 0

MA0802.1_rc_shift0 (TBR1_rc)
; oligos_8nt_mkv5_m7 versus MA0802.1_rc (TBR1_rc); m=48/50; ncol2=10; w=8; offset=-2; strand=R; shift=0; score=0.424252; tTTCACACCT--------- ; cor=; Ncor= a 5846.0 4576.0 205.0 7001.0 34509.0 4.0 34509.0 213.0 4480.0 1433.0 0 0 0 0 0 0 0 0 0 c 4537.0 1488.0 584.0 34509.0 157.0 34509.0 88.0 34509.0 34509.0 3329.0 0 0 0 0 0 0 0 0 0 g 5619.0 2575.0 90.0 2551.0 4742.0 6.0 1759.0 254.0 3255.0 359.0 0 0 0 0 0 0 0 0 0 t 18507.0 25869.0 34509.0 1175.0 2386.0 0.0 39.0 70.0 6880.0 34509.0 0 0 0 0 0 0 0 0 0

MA0688.1_rc_shift0 (TBX2_rc)
; oligos_8nt_mkv5_m7 versus MA0688.1_rc (TBX2_rc); m=49/50; ncol2=11; w=9; offset=-2; strand=R; shift=0; score=0.418119; ttTcACACCTw-------- ; cor=; Ncor= a 667.0 656.0 120.0 1409.0 3181.0 12.0 3181.0 14.0 353.0 442.0 804.0 0 0 0 0 0 0 0 0 c 590.0 527.0 125.0 3181.0 27.0 3181.0 21.0 3181.0 3181.0 716.0 717.0 0 0 0 0 0 0 0 0 g 446.0 491.0 26.0 1289.0 392.0 0.0 329.0 36.0 519.0 59.0 402.0 0 0 0 0 0 0 0 0 t 1477.0 2525.0 3181.0 310.0 307.0 26.0 0.0 9.0 602.0 3181.0 1258.0 0 0 0 0 0 0 0 0

MA0689.1_rc_shift0 (TBX20_rc)
; oligos_8nt_mkv5_m7 versus MA0689.1_rc (TBX20_rc); m=50/50; ncol2=11; w=9; offset=-2; strand=R; shift=0; score=0.405334; yTTCACACCTw-------- ; cor=; Ncor= a 59.0 170.0 10.0 82.0 572.0 4.0 572.0 40.0 26.0 24.0 250.0 0 0 0 0 0 0 0 0 c 300.0 53.0 6.0 572.0 11.0 572.0 10.0 572.0 572.0 54.0 121.0 0 0 0 0 0 0 0 0 g 60.0 16.0 1.0 10.0 1.0 1.0 0.0 0.0 34.0 23.0 4.0 0 0 0 0 0 0 0 0 t 154.0 572.0 572.0 48.0 8.0 0.0 0.0 0.0 50.0 572.0 197.0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_6nt_m4_shift1 ; 31 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m4_shift1 (positions_6nt_m4positions_6nt_m4)
; positions_6nt_m4 (positions_6nt_m4positions_6nt_m4); m=0 (reference); ncol1=14; shift=1; ncol=18; -srsAGCAGCTGbys--- ; Alignment reference a 0 587 644 316 1780 114 0 2530 4 4 0 0 222 401 575 0 0 0 c 0 750 556 1307 181 76 2525 3 2 2526 6 3 808 804 705 0 0 0 g 0 751 937 648 314 2324 1 1 2527 3 2 2532 765 625 823 0 0 0 t 0 447 398 264 260 21 9 1 2 2 2527 0 740 705 432 0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_6nt_m4 versus MA0500.2_rc (MYOG_rc); m=1/30; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.810488; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; positions_6nt_m4 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=2/30; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.738822; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; positions_6nt_m4 versus MA1631.1_rc (ASCL1(var.2)_rc); m=3/30; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.736283; --gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; positions_6nt_m4 versus MA1641.1_rc (MYF5_rc); m=4/30; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.73137; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; positions_6nt_m4 versus MA0521.1_rc (Tcf12_rc); m=5/30; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.711258; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; positions_6nt_m4 versus MA0830.2_rc (TCF4_rc); m=6/30; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.704968; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA1485.1_shift2 (FERD3L)
; positions_6nt_m4 versus MA1485.1 (FERD3L); m=7/30; ncol2=14; w=13; offset=1; strand=D; shift=2; score=0.685262; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; positions_6nt_m4 versus MA0832.1_rc (Tcf21_rc); m=8/30; ncol2=14; w=13; offset=1; strand=R; shift=2; score=0.680081; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; positions_6nt_m4 versus MA0816.1_rc (Ascl2_rc); m=9/30; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.679953; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA1618.1_rc_shift2 (Ptf1a_rc)
; positions_6nt_m4 versus MA1618.1_rc (Ptf1a_rc); m=10/30; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.674713; --dmaaCATCTGtkh--- ; cor=; Ncor= a 0 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 c 0 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 g 0 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 t 0 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; positions_6nt_m4 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=11/30; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.663729; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1100.2_shift4 (ASCL1)
; positions_6nt_m4 versus MA1100.2 (ASCL1); m=12/30; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.663206; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; positions_6nt_m4 versus MA0048.2_rc (NHLH1_rc); m=13/30; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.652078; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; positions_6nt_m4 versus MA1472.1 (BHLHA15(var.2)); m=14/30; ncol2=10; w=10; offset=3; strand=D; shift=4; score= 0.6468; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA0499.2_shift3 (MYOD1)
; positions_6nt_m4 versus MA0499.2 (MYOD1); m=15/30; ncol2=13; w=12; offset=2; strand=D; shift=3; score=0.632872; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; positions_6nt_m4 versus MA1648.1_rc (TCF12(var.2)_rc); m=16/30; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.618897; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA1529.1_shift0 (NHLH2)
; positions_6nt_m4 versus MA1529.1 (NHLH2); m=17/30; ncol2=18; w=14; offset=-1; strand=D; shift=0; score=0.616812; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0522.3_rc_shift3 (TCF3_rc)
; positions_6nt_m4 versus MA0522.3_rc (TCF3_rc); m=18/30; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.612557; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; positions_6nt_m4 versus MA1467.1 (ATOH1(var.2)); m=19/30; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.602045; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; positions_6nt_m4 versus MA0691.1_rc (TFAP4_rc); m=20/30; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.601211; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; positions_6nt_m4 versus MA0665.1_rc (MSC_rc); m=21/30; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.585443; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA0103.3_rc_shift3 (ZEB1_rc)
; positions_6nt_m4 versus MA0103.3_rc (ZEB1_rc); m=22/30; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.566269; ---sssCAGGTGss---- ; cor=; Ncor= a 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 0 0 0 c 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 0 0 0 g 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 0 0 0 t 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0 0 0 0

MA0745.2_shift3 (SNAI2)
; positions_6nt_m4 versus MA0745.2 (SNAI2); m=23/30; ncol2=13; w=12; offset=2; strand=D; shift=3; score=0.565381; ---aygCACCTGTmry-- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0

MA0820.1_shift4 (FIGLA)
; positions_6nt_m4 versus MA0820.1 (FIGLA); m=24/30; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.537486; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

MA0667.1_shift4 (MYF6)
; positions_6nt_m4 versus MA0667.1 (MYF6); m=25/30; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.530145; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

MA1558.1_shift4 (SNAI1)
; positions_6nt_m4 versus MA1558.1 (SNAI1); m=26/30; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.52666; ----drCAGGTGyr---- ; cor=; Ncor= a 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 0 c 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 0 g 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 0 t 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0 0

MA0091.1_rc_shift4 (TAL1::TCF3_rc)
; positions_6nt_m4 versus MA0091.1_rc (TAL1::TCF3_rc); m=27/30; ncol2=12; w=11; offset=3; strand=R; shift=4; score=0.516695; ----AmCAKMTGkTck-- ; cor=; Ncor= a 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 0 0 c 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 0 0 g 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 0 0 t 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0 0 0

MA1638.1_shift4 (HAND2)
; positions_6nt_m4 versus MA1638.1 (HAND2); m=28/30; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.507329; ----amCAGATGby---- ; cor=; Ncor= a 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 0 0 0 c 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 0 0 0 g 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 0 0 0 t 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0 0 0 0

MA0100.3_rc_shift4 (MYB_rc)
; positions_6nt_m4 versus MA0100.3_rc (MYB_rc); m=29/30; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.505014; ----kdCAGTTGvk---- ; cor=; Ncor= a 0 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 0 0 0 c 0 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 0 0 0 g 0 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 0 0 0 t 0 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0 0 0 0

MA1559.1_shift4 (SNAI3)
; positions_6nt_m4 versus MA1559.1 (SNAI3); m=30/30; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.503903; ----arCAGGTGya---- ; cor=; Ncor= a 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m3_shift0 ; 30 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m3_shift0 (oligos_7nt_mkv4_m3oligos_7nt_mkv4_m3)
; oligos_7nt_mkv4_m3 (oligos_7nt_mkv4_m3oligos_7nt_mkv4_m3); m=0 (reference); ncol1=14; shift=0; ncol=14; sdGACAGCTGTChs ; Alignment reference a 198 210 58 670 1 817 4 3 2 2 30 23 243 115 c 210 131 94 60 821 3 20 798 3 1 66 650 241 302 g 302 241 650 65 1 3 798 20 3 821 60 94 131 210 t 115 243 23 30 2 2 3 4 817 1 669 58 210 198

MA0832.1_shift0 (Tcf21)
; oligos_7nt_mkv4_m3 versus MA0832.1 (Tcf21); m=1/29; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.806164; ryAACAGCTGTTry ; cor=; Ncor= a 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0

MA1641.1_shift1 (MYF5)
; oligos_7nt_mkv4_m3 versus MA1641.1 (MYF5); m=2/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.799618; -gvaCAGCTGtbc- ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0

MA1485.1_rc_shift0 (FERD3L_rc)
; oligos_7nt_mkv4_m3 versus MA1485.1_rc (FERD3L_rc); m=3/29; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.794062; GTrACAGCTGkyrC ; cor=; Ncor= a 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0

MA1619.1_shift1 (Ptf1a(var.2))
; oligos_7nt_mkv4_m3 versus MA1619.1 (Ptf1a(var.2)); m=4/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.782139; -rmaCAGCTGtky- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA0796.1_shift1 (TGIF1)
; oligos_7nt_mkv4_m3 versus MA0796.1 (TGIF1); m=5/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.772856; -TGACAGCTGTCA- ; cor=; Ncor= a 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 c 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 g 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 t 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0

MA1571.1_rc_shift1 (TGIF2LX_rc)
; oligos_7nt_mkv4_m3 versus MA1571.1_rc (TGIF2LX_rc); m=6/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.772125; -TGACAgcTGTCA- ; cor=; Ncor= a 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0

MA1621.1_shift0 (Rbpjl)
; oligos_7nt_mkv4_m3 versus MA1621.1 (Rbpjl); m=7/29; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.769805; svmaCACCTGtsyc ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0

MA1572.1_rc_shift1 (TGIF2LY_rc)
; oligos_7nt_mkv4_m3 versus MA1572.1_rc (TGIF2LY_rc); m=8/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.762155; -TGACAgcTGTCA- ; cor=; Ncor= a 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0

MA0797.1_shift1 (TGIF2)
; oligos_7nt_mkv4_m3 versus MA0797.1 (TGIF2); m=9/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.759011; -TGACAGsTGTCA- ; cor=; Ncor= a 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0

MA0783.1_shift1 (PKNOX2)
; oligos_7nt_mkv4_m3 versus MA0783.1 (PKNOX2); m=10/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.724449; -TGACAGsTGTCA- ; cor=; Ncor= a 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0

MA0500.2_rc_shift1 (MYOG_rc)
; oligos_7nt_mkv4_m3 versus MA0500.2_rc (MYOG_rc); m=11/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.724117; -sarCAGCTGyts- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA0499.2_rc_shift0 (MYOD1_rc)
; oligos_7nt_mkv4_m3 versus MA0499.2_rc (MYOD1_rc); m=12/29; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.723791; rkrACAGGTGcwg- ; cor=; Ncor= a 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0

MA1618.1_rc_shift0 (Ptf1a_rc)
; oligos_7nt_mkv4_m3 versus MA1618.1_rc (Ptf1a_rc); m=13/29; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.697486; dmaaCATCTGtkh- ; cor=; Ncor= a 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 c 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 g 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 t 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0

MA1620.1_shift1 (Ptf1a(var.3))
; oligos_7nt_mkv4_m3 versus MA1620.1 (Ptf1a(var.3)); m=14/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.674896; -rmaCACCTGtky- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0

MA0521.1_shift2 (Tcf12)
; oligos_7nt_mkv4_m3 versus MA0521.1 (Tcf12); m=15/29; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.670327; --rRCAGCTGswg- ; cor=; Ncor= a 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA1467.1_shift2 (ATOH1(var.2))
; oligos_7nt_mkv4_m3 versus MA1467.1 (ATOH1(var.2)); m=16/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.660096; --AACAGCTGTY-- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0

MA0745.2_rc_shift0 (SNAI2_rc)
; oligos_7nt_mkv4_m3 versus MA0745.2_rc (SNAI2_rc); m=17/29; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.659394; rykACAGGTGcrt- ; cor=; Ncor= a 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0

MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)
; oligos_7nt_mkv4_m3 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=18/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.621091; --rrCAGCTGbt-- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0

MA1635.1_shift2 (BHLHE22(var.2))
; oligos_7nt_mkv4_m3 versus MA1635.1 (BHLHE22(var.2)); m=19/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.60117; --csCAGCTGsg-- ; cor=; Ncor= a 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA0665.1_shift2 (MSC)
; oligos_7nt_mkv4_m3 versus MA0665.1 (MSC); m=20/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.595826; --AACAGCTGTT-- ; cor=; Ncor= a 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0

MA1100.2_rc_shift2 (ASCL1_rc)
; oligos_7nt_mkv4_m3 versus MA1100.2_rc (ASCL1_rc); m=21/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.587059; --rgCAGCTGyy-- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0

MA0667.1_rc_shift2 (MYF6_rc)
; oligos_7nt_mkv4_m3 versus MA0667.1_rc (MYF6_rc); m=22/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.582147; --RACAGyTGTT-- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0

MA0816.1_shift2 (Ascl2)
; oligos_7nt_mkv4_m3 versus MA0816.1 (Ascl2); m=23/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.570909; --arCAGCTGyy-- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA0691.1_shift2 (TFAP4)
; oligos_7nt_mkv4_m3 versus MA0691.1 (TFAP4); m=24/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.568078; --AwCAGCTGwT-- ; cor=; Ncor= a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA0820.1_rc_shift2 (FIGLA_rc)
; oligos_7nt_mkv4_m3 versus MA0820.1_rc (FIGLA_rc); m=25/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.514776; --wmCAGGTGkw-- ; cor=; Ncor= a 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0

MA0048.2_shift2 (NHLH1)
; oligos_7nt_mkv4_m3 versus MA0048.2 (NHLH1); m=26/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.503045; --cGCAGCTGCk-- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0

MA0774.1_shift0 (MEIS2)
; oligos_7nt_mkv4_m3 versus MA0774.1 (MEIS2); m=27/29; ncol2=8; w=8; offset=0; strand=D; shift=0; score=0.472229; tTGACAGs------ ; cor=; Ncor= a 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 c 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 g 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 t 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0

MA0775.1_shift0 (MEIS3)
; oligos_7nt_mkv4_m3 versus MA0775.1 (MEIS3); m=28/29; ncol2=8; w=8; offset=0; strand=D; shift=0; score=0.448442; wTGACAgs------ ; cor=; Ncor= a 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 c 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 g 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 t 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0

MA0498.2_shift0 (MEIS1)
; oligos_7nt_mkv4_m3 versus MA0498.2 (MEIS1); m=29/29; ncol2=7; w=7; offset=0; strand=D; shift=0; score=0.415261; wTGACAg------- ; cor=; Ncor= a 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 0 0 0 c 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 0 0 0 g 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 0 0 0 t 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m13_shift0 ; 30 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m13_shift0 (oligos_8nt_mkv5_m13oligos_8nt_mkv5_m13)
; oligos_8nt_mkv5_m13 (oligos_8nt_mkv5_m13oligos_8nt_mkv5_m13); m=0 (reference); ncol1=14; shift=0; ncol=14; gsAGCAGCTGTCms ; Alignment reference a 251 183 715 58 3 1005 6 9 2 2 22 32 290 143 c 254 383 49 59 1019 2 18 994 3 5 45 807 317 369 g 353 297 92 888 1 4 993 12 0 1011 26 80 171 285 t 166 161 168 19 1 13 7 9 1019 6 931 105 246 227

MA0499.2_shift1 (MYOD1)
; oligos_8nt_mkv5_m13 versus MA0499.2 (MYOD1); m=1/29; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.805923; -cwgCACCTGTymy ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0

MA0832.1_rc_shift0 (Tcf21_rc)
; oligos_8nt_mkv5_m13 versus MA0832.1_rc (Tcf21_rc); m=2/29; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.793553; ryAACAGCTGTTry ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0

MA1485.1_shift0 (FERD3L)
; oligos_8nt_mkv5_m13 versus MA1485.1 (FERD3L); m=3/29; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.756709; GyrmCAGCTGTyAC ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0

MA0500.2_shift1 (MYOG)
; oligos_8nt_mkv5_m13 versus MA0500.2 (MYOG); m=4/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.755068; -sarCAGCTGyts- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0

MA1641.1_rc_shift1 (MYF5_rc)
; oligos_8nt_mkv5_m13 versus MA1641.1_rc (MYF5_rc); m=5/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.737557; -gvaCAGCTGtbc- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0

MA1619.1_rc_shift1 (Ptf1a(var.2)_rc)
; oligos_8nt_mkv5_m13 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=6/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.730612; -rmaCAGCTGtky- ; cor=; Ncor= a 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 c 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 g 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 t 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; oligos_8nt_mkv5_m13 versus MA0521.1_rc (Tcf12_rc); m=7/29; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.721165; -cwsCAGCTGYy-- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0

MA1621.1_shift0 (Rbpjl)
; oligos_8nt_mkv5_m13 versus MA1621.1 (Rbpjl); m=8/29; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.716035; svmaCACCTGtsyc ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0

MA0745.2_shift1 (SNAI2)
; oligos_8nt_mkv5_m13 versus MA0745.2 (SNAI2); m=9/29; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.706761; -aygCACCTGTmry ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0

MA1618.1_rc_shift0 (Ptf1a_rc)
; oligos_8nt_mkv5_m13 versus MA1618.1_rc (Ptf1a_rc); m=10/29; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.681275; dmaaCATCTGtkh- ; cor=; Ncor= a 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 c 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 g 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 t 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0

MA1631.1_rc_shift0 (ASCL1(var.2)_rc)
; oligos_8nt_mkv5_m13 versus MA1631.1_rc (ASCL1(var.2)_rc); m=11/29; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.660244; gsrGCAGGTGchg- ; cor=; Ncor= a 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 c 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 g 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 t 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0

MA0830.2_shift1 (TCF4)
; oligos_8nt_mkv5_m13 versus MA0830.2 (TCF4); m=12/29; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.652949; -cggCACCTGccss ; cor=; Ncor= a 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 c 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 g 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 t 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0

MA1467.1_shift2 (ATOH1(var.2))
; oligos_8nt_mkv5_m13 versus MA1467.1 (ATOH1(var.2)); m=13/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.637104; --AACAGCTGTY-- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0

MA0816.1_rc_shift2 (Ascl2_rc)
; oligos_8nt_mkv5_m13 versus MA0816.1_rc (Ascl2_rc); m=14/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.626736; --rrCAGCTGyt-- ; cor=; Ncor= a 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 c 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 g 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 t 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0

MA1472.1_shift2 (BHLHA15(var.2))
; oligos_8nt_mkv5_m13 versus MA1472.1 (BHLHA15(var.2)); m=15/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.622942; --avCAGCTGyy-- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0

MA1100.2_shift2 (ASCL1)
; oligos_8nt_mkv5_m13 versus MA1100.2 (ASCL1); m=16/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.613092; --rrCAGCTGcy-- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA1620.1_rc_shift1 (Ptf1a(var.3)_rc)
; oligos_8nt_mkv5_m13 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=17/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.60981; -rmaCAGGTGtky- ; cor=; Ncor= a 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 c 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 g 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 t 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0

MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; oligos_8nt_mkv5_m13 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=18/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.606896; --csCAGCTGsg-- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0

MA0665.1_rc_shift2 (MSC_rc)
; oligos_8nt_mkv5_m13 versus MA0665.1_rc (MSC_rc); m=19/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.592598; --AACAGCTGTT-- ; cor=; Ncor= a 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0

MA0691.1_rc_shift2 (TFAP4_rc)
; oligos_8nt_mkv5_m13 versus MA0691.1_rc (TFAP4_rc); m=20/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.575379; --AwCAGCTGwT-- ; cor=; Ncor= a 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 c 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 g 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 t 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0

MA1648.1_rc_shift1 (TCF12(var.2)_rc)
; oligos_8nt_mkv5_m13 versus MA1648.1_rc (TCF12(var.2)_rc); m=21/29; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.569785; -srGCAGGTGss-- ; cor=; Ncor= a 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 c 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 g 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 t 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0

MA0522.3_rc_shift1 (TCF3_rc)
; oligos_8nt_mkv5_m13 versus MA0522.3_rc (TCF3_rc); m=22/29; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.566241; -ssGCAGGTGbs-- ; cor=; Ncor= a 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 c 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 g 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 t 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0

MA0048.2_rc_shift2 (NHLH1_rc)
; oligos_8nt_mkv5_m13 versus MA0048.2_rc (NHLH1_rc); m=23/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.565733; --mGCAGCTGCg-- ; cor=; Ncor= a 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA0667.1_shift2 (MYF6)
; oligos_8nt_mkv5_m13 versus MA0667.1 (MYF6); m=24/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.56256; --AACArCTGTY-- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0

MA0820.1_shift2 (FIGLA)
; oligos_8nt_mkv5_m13 versus MA0820.1 (FIGLA); m=25/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.518138; --wmCACCTGkw-- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0

MA1559.1_rc_shift2 (SNAI3_rc)
; oligos_8nt_mkv5_m13 versus MA1559.1_rc (SNAI3_rc); m=26/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.501574; --trCACCTGyt-- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0

MA0774.1_rc_shift6 (MEIS2_rc)
; oligos_8nt_mkv5_m13 versus MA0774.1_rc (MEIS2_rc); m=27/29; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.473075; ------sCTGTCAa ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0

MA0775.1_rc_shift6 (MEIS3_rc)
; oligos_8nt_mkv5_m13 versus MA0775.1_rc (MEIS3_rc); m=28/29; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.449862; ------scTGTCAw ; cor=; Ncor= a 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 c 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 g 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 t 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0

MA0498.2_rc_shift7 (MEIS1_rc)
; oligos_8nt_mkv5_m13 versus MA0498.2_rc (MEIS1_rc); m=29/29; ncol2=7; w=7; offset=7; strand=R; shift=7; score=0.417284; -------cTGTCAw ; cor=; Ncor= a 0 0 0 0 0 0 0 15106.0 3861.0 1155.0 0.0 0.0 77159.0 24921.0 c 0 0 0 0 0 0 0 29965.0 9263.0 0.0 672.0 77159.0 3174.0 9714.0 g 0 0 0 0 0 0 0 14864.0 0.0 77159.0 2903.0 1249.0 5575.0 18797.0 t 0 0 0 0 0 0 0 17224.0 77159.0 0.0 77159.0 0.0 8690.0 23727.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m50_shift6 ; 17 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m50_shift6 (oligos_6nt_mkv3_m50oligos_6nt_mkv3_m50)
; oligos_6nt_mkv3_m50 (oligos_6nt_mkv3_m50oligos_6nt_mkv3_m50); m=0 (reference); ncol1=10; shift=6; ncol=16; ------rvATGCAAvs ; Alignment reference a 0 0 0 0 0 0 47 50 179 0 1 0 178 179 51 38 c 0 0 0 0 0 0 32 56 0 0 1 173 0 0 53 48 g 0 0 0 0 0 0 56 52 0 0 177 1 1 0 53 57 t 0 0 0 0 0 0 44 21 0 179 0 5 0 0 22 36

MA1115.1_shift6 (POU5F1)
; oligos_6nt_mkv3_m50 versus MA1115.1 (POU5F1); m=1/16; ncol2=11; w=10; offset=0; strand=D; shift=6; score=0.804293; ------wwATGCAAAt ; cor=; Ncor= a 0 0 0 0 0 0 4982.0 3603.0 12693.0 83.0 717.0 533.0 11756.0 10560.0 12280.0 2556.0 c 0 0 0 0 0 0 1290.0 2785.0 122.0 130.0 192.0 10310.0 132.0 690.0 270.0 2104.0 g 0 0 0 0 0 0 1996.0 1908.0 229.0 67.0 11571.0 548.0 118.0 1026.0 257.0 2071.0 t 0 0 0 0 0 0 4846.0 4818.0 70.0 12834.0 634.0 1723.0 1108.0 838.0 307.0 6383.0

MA0019.1_shift6 (Ddit3::Cebpa)
; oligos_6nt_mkv3_m50 versus MA0019.1 (Ddit3::Cebpa); m=2/16; ncol2=12; w=10; offset=0; strand=D; shift=6; score=0.701324; ------rrrTGCAATm ; cor=; Ncor= a 0 0 0 0 0 0 14.0 11.0 18.0 0.0 0.0 4.0 38.0 36.0 0.0 14.0 c 0 0 0 0 0 0 7.0 7.0 3.0 1.0 0.0 33.0 1.0 2.0 6.0 17.0 g 0 0 0 0 0 0 12.0 14.0 15.0 0.0 38.0 0.0 0.0 1.0 0.0 5.0 t 0 0 0 0 0 0 6.0 7.0 3.0 38.0 1.0 2.0 0.0 0.0 33.0 3.0

MA0792.1_shift7 (POU5F1B)
; oligos_6nt_mkv3_m50 versus MA0792.1 (POU5F1B); m=3/16; ncol2=9; w=9; offset=1; strand=D; shift=7; score=0.683832; -------TATGywAAT ; cor=; Ncor= a 0 0 0 0 0 0 0 1326.0 9519.0 171.0 322.0 398.0 6299.0 9519.0 9519.0 1559.0 c 0 0 0 0 0 0 0 1778.0 21.0 364.0 94.0 9519.0 51.0 144.0 65.0 537.0 g 0 0 0 0 0 0 0 808.0 67.0 206.0 9519.0 1293.0 65.0 856.0 97.0 750.0 t 0 0 0 0 0 0 0 9519.0 84.0 9519.0 1790.0 3828.0 3220.0 896.0 203.0 9519.0

MA0789.1_shift7 (POU3F4)
; oligos_6nt_mkv3_m50 versus MA0789.1 (POU3F4); m=4/16; ncol2=9; w=9; offset=1; strand=D; shift=7; score=0.662764; -------TATGCwAAT ; cor=; Ncor= a 0 0 0 0 0 0 0 941.0 11117.0 59.0 53.0 136.0 6447.0 11117.0 11117.0 705.0 c 0 0 0 0 0 0 0 349.0 23.0 59.0 19.0 11117.0 10.0 332.0 47.0 247.0 g 0 0 0 0 0 0 0 136.0 68.0 24.0 11117.0 602.0 56.0 315.0 88.0 292.0 t 0 0 0 0 0 0 0 11117.0 26.0 11117.0 245.0 2565.0 4670.0 885.0 168.0 11117.0

MA0627.2_shift5 (POU2F3)
; oligos_6nt_mkv3_m50 versus MA0627.2 (POU2F3); m=5/16; ncol2=13; w=10; offset=-1; strand=D; shift=5; score=0.641438; -----watATGCAAAT ; cor=; Ncor= a 0 0 0 0 0 17399.0 26660.0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 c 0 0 0 0 0 11383.0 6824.0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 g 0 0 0 0 0 10722.0 8770.0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 t 0 0 0 0 0 16525.0 13775.0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0

MA0507.1_rc_shift6 (POU2F2_rc)
; oligos_6nt_mkv3_m50 versus MA0507.1_rc (POU2F2_rc); m=6/16; ncol2=13; w=10; offset=0; strand=R; shift=6; score=0.640369; ------wyATGCAAAT ; cor=; Ncor= a 0 0 0 0 0 0 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 c 0 0 0 0 0 0 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 g 0 0 0 0 0 0 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 t 0 0 0 0 0 0 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0

MA0785.1_shift5 (POU2F1)
; oligos_6nt_mkv3_m50 versus MA0785.1 (POU2F1); m=7/16; ncol2=12; w=10; offset=-1; strand=D; shift=5; score=0.621535; -----awTATGcwAAT ; cor=; Ncor= a 0 0 0 0 0 5076.0 5351.0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 c 0 0 0 0 0 1938.0 1046.0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 g 0 0 0 0 0 1494.0 2142.0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 t 0 0 0 0 0 2075.0 5231.0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0

MA0786.1_shift6 (POU3F1)
; oligos_6nt_mkv3_m50 versus MA0786.1 (POU3F1); m=8/16; ncol2=12; w=10; offset=0; strand=D; shift=6; score=0.600768; ------wTATGywAAT ; cor=; Ncor= a 0 0 0 0 0 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 c 0 0 0 0 0 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 g 0 0 0 0 0 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 t 0 0 0 0 0 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0

MA0787.1_shift6 (POU3F2)
; oligos_6nt_mkv3_m50 versus MA0787.1 (POU3F2); m=9/16; ncol2=12; w=10; offset=0; strand=D; shift=6; score=0.59313; ------wTATGCwAAT ; cor=; Ncor= a 0 0 0 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 c 0 0 0 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 g 0 0 0 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 t 0 0 0 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0

MA0025.2_shift4 (NFIL3)
; oligos_6nt_mkv3_m50 versus MA0025.2 (NFIL3); m=10/16; ncol2=13; w=10; offset=-2; strand=D; shift=4; score=0.588289; ----wrTTATGyAAta ; cor=; Ncor= a 0 0 0 0 6368.0 9041.0 870.0 468.0 21353.0 659.0 1460.0 1358.0 21848.0 21911.0 2193.0 7671.0 c 0 0 0 0 3904.0 3896.0 681.0 208.0 220.0 1511.0 467.0 12004.0 543.0 251.0 4959.0 5630.0 g 0 0 0 0 5615.0 7261.0 518.0 1714.0 990.0 492.0 20459.0 454.0 171.0 360.0 2701.0 4152.0 t 0 0 0 0 7109.0 2798.0 20927.0 20606.0 433.0 20334.0 610.0 9180.0 434.0 474.0 13143.0 5543.0

MA0833.2_shift3 (ATF4)
; oligos_6nt_mkv3_m50 versus MA0833.2 (ATF4); m=11/16; ncol2=14; w=10; offset=-3; strand=D; shift=3; score=0.57416; ---rraTGATGCAATm ; cor=; Ncor= a 0 0 0 12094.0 11782.0 20881.0 498.0 228.0 32087.0 243.0 156.0 4906.0 32904.0 32963.0 803.0 12607.0 c 0 0 0 5054.0 4365.0 5781.0 386.0 198.0 217.0 1626.0 51.0 23000.0 169.0 70.0 6134.0 9846.0 g 0 0 0 9022.0 10152.0 5970.0 297.0 32315.0 543.0 328.0 32958.0 105.0 74.0 112.0 2808.0 4718.0 t 0 0 0 7106.0 6977.0 644.0 32095.0 535.0 429.0 31079.0 111.0 5265.0 129.0 131.0 23531.0 6105.0

MA0043.3_shift3 (HLF)
; oligos_6nt_mkv3_m50 versus MA0043.3 (HLF); m=12/16; ncol2=14; w=10; offset=-3; strand=D; shift=3; score=0.563052; ---wdrTTATGYAAym ; cor=; Ncor= a 0 0 0 6810.0 6191.0 8789.0 295.0 162.0 22746.0 197.0 2418.0 369.0 24156.0 24055.0 1399.0 8897.0 c 0 0 0 5063.0 4009.0 4432.0 242.0 96.0 125.0 1548.0 112.0 17203.0 122.0 67.0 13237.0 6412.0 g 0 0 0 5626.0 6297.0 9793.0 148.0 895.0 1344.0 253.0 21705.0 199.0 48.0 189.0 3300.0 3218.0 t 0 0 0 6925.0 7927.0 1410.0 23739.0 23271.0 209.0 22426.0 189.0 6653.0 98.0 113.0 6488.0 5897.0

MA0142.1_shift1 (Pou5f1::Sox2)
; oligos_6nt_mkv3_m50 versus MA0142.1 (Pou5f1::Sox2); m=13/16; ncol2=15; w=10; offset=-5; strand=D; shift=1; score=0.544975; -ywTTswyATGCAaAt ; cor=; Ncor= a 0 63.0 579.0 11.0 47.0 118.0 415.0 206.0 1235.0 17.0 10.0 14.0 1050.0 887.0 1200.0 198.0 c 0 846.0 58.0 50.0 12.0 363.0 18.0 365.0 30.0 5.0 16.0 1029.0 16.0 68.0 33.0 119.0 g 0 66.0 28.0 36.0 79.0 825.0 29.0 186.0 24.0 15.0 1239.0 129.0 30.0 315.0 75.0 207.0 t 0 389.0 701.0 1270.0 1231.0 63.0 907.0 612.0 80.0 1332.0 104.0 196.0 269.0 92.0 53.0 837.0

MA1636.1_shift3 (CEBPG(var.2))
; oligos_6nt_mkv3_m50 versus MA1636.1 (CEBPG(var.2)); m=14/16; ncol2=15; w=10; offset=-3; strand=D; shift=3; score=0.531027; ---adATGATGCAATm ; cor=; Ncor= a 0 0 0 12055.0 11639.0 25956.0 318.0 659.0 31891.0 2082.0 522.0 4374.0 36286.0 36428.0 1081.0 12949.0 c 0 0 0 7638.0 4688.0 3080.0 249.0 351.0 481.0 2719.0 215.0 28897.0 582.0 191.0 4761.0 15060.0 g 0 0 0 8655.0 10136.0 7547.0 306.0 29947.0 2565.0 1101.0 36189.0 309.0 129.0 304.0 2291.0 4027.0 t 0 0 0 8968.0 10853.0 733.0 36443.0 6359.0 2379.0 31414.0 390.0 3736.0 319.0 393.0 29183.0 5280.0

MA0784.1_shift5 (POU1F1)
; oligos_6nt_mkv3_m50 versus MA0784.1 (POU1F1); m=15/16; ncol2=14; w=10; offset=-1; strand=D; shift=5; score=0.51538; -----awTATGCwAAT ; cor=; Ncor= a 0 0 0 0 0 1211.0 1128.0 276.0 2128.0 45.0 28.0 98.0 1267.0 2128.0 2128.0 76.0 c 0 0 0 0 0 247.0 123.0 83.0 14.0 74.0 11.0 2128.0 12.0 11.0 10.0 37.0 g 0 0 0 0 0 273.0 187.0 108.0 32.0 26.0 2128.0 164.0 7.0 82.0 0.0 40.0 t 0 0 0 0 0 397.0 1000.0 2128.0 19.0 2128.0 176.0 536.0 861.0 85.0 3.0 2128.0

MA0088.2_shift0 (ZNF143)
; oligos_6nt_mkv3_m50 versus MA0088.2 (ZNF143); m=16/16; ncol2=16; w=10; offset=-6; strand=D; shift=0; score=0.465103; ywCCCAyAATGCAyyG ; cor=; Ncor= a 87.0 949.0 21.0 2.0 0.0 1609.0 0.0 1295.0 1572.0 6.0 59.0 0.0 1503.0 345.0 102.0 382.0 c 509.0 0.0 1590.0 1609.0 1609.0 0.0 917.0 143.0 0.0 0.0 36.0 1609.0 153.0 1067.0 1138.0 21.0 g 153.0 13.0 1.0 0.0 0.0 4.0 61.0 310.0 67.0 1.0 1553.0 0.0 3.0 15.0 13.0 1518.0 t 1285.0 652.0 1.0 0.0 0.0 3.0 686.0 0.0 1.0 1609.0 9.0 0.0 27.0 1080.0 1199.0 120.0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m17_shift2 ; 48 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m17_shift2 (oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17)
; oligos_8nt_mkv5_m17 (oligos_8nt_mkv5_m17oligos_8nt_mkv5_m17); m=0 (reference); ncol1=14; shift=2; ncol=16; --ssaCACCTGTTgyy ; Alignment reference a 0 0 89 84 211 1 362 5 1 1 0 2 5 26 41 56 c 0 0 91 111 71 361 2 272 357 2 0 26 7 84 151 122 g 0 0 96 115 58 1 0 82 2 0 364 2 3 219 67 83 t 0 0 88 54 24 1 0 5 4 361 0 334 349 35 105 103

MA0744.2_rc_shift2 (SCRT2_rc)
; oligos_8nt_mkv5_m17 versus MA0744.2_rc (SCRT2_rc); m=1/47; ncol2=16; w=14; offset=0; strand=R; shift=2; score=0.803891; --waccACCTGTTGmw ; cor=; Ncor= a 0 0 21453.0 18751.0 15588.0 11335.0 58889.0 2140.0 1471.0 1184.0 204.0 953.0 4384.0 3732.0 17252.0 16873.0 c 0 0 12430.0 14716.0 25288.0 38133.0 1168.0 60636.0 56105.0 252.0 319.0 1878.0 2265.0 1339.0 35769.0 12473.0 g 0 0 13846.0 16085.0 11351.0 5661.0 3475.0 972.0 728.0 294.0 64856.0 413.0 5536.0 59161.0 7236.0 6319.0 t 0 0 17881.0 16058.0 13383.0 10481.0 2078.0 1862.0 7306.0 63880.0 231.0 62366.0 53425.0 1378.0 5353.0 29945.0

MA0745.2_shift2 (SNAI2)
; oligos_8nt_mkv5_m17 versus MA0745.2 (SNAI2); m=2/47; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.798566; --aygCACCTGTmry- ; cor=; Ncor= a 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA0499.2_shift2 (MYOD1)
; oligos_8nt_mkv5_m17 versus MA0499.2 (MYOD1); m=3/47; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.795523; --cwgCACCTGTymy- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0743.2_rc_shift2 (SCRT1_rc)
; oligos_8nt_mkv5_m17 versus MA0743.2_rc (SCRT1_rc); m=4/47; ncol2=16; w=14; offset=0; strand=R; shift=2; score=0.79336; --wacCACCTGTTGmw ; cor=; Ncor= a 0 0 19839.0 18454.0 13726.0 7910.0 57969.0 1579.0 1305.0 1058.0 215.0 1002.0 4017.0 2621.0 31975.0 24326.0 c 0 0 11049.0 13470.0 26973.0 41190.0 259.0 56500.0 51330.0 159.0 224.0 1566.0 1835.0 1297.0 16396.0 10154.0 g 0 0 12837.0 14903.0 8788.0 3296.0 1098.0 466.0 557.0 234.0 59557.0 370.0 8751.0 54835.0 7425.0 8693.0 t 0 0 16484.0 13382.0 10722.0 7813.0 883.0 1664.0 7017.0 58758.0 213.0 57271.0 45606.0 1456.0 4413.0 17036.0

MA1620.1_shift2 (Ptf1a(var.3))
; oligos_8nt_mkv5_m17 versus MA1620.1 (Ptf1a(var.3)); m=5/47; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.776272; --rmaCACCTGtky-- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0

MA1621.1_shift1 (Rbpjl)
; oligos_8nt_mkv5_m17 versus MA1621.1 (Rbpjl); m=6/47; ncol2=14; w=13; offset=-1; strand=D; shift=1; score=0.769688; -svmaCACCTGtsyc- ; cor=; Ncor= a 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0

MA0832.1_rc_shift1 (Tcf21_rc)
; oligos_8nt_mkv5_m17 versus MA0832.1_rc (Tcf21_rc); m=7/47; ncol2=14; w=13; offset=-1; strand=R; shift=1; score=0.732165; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA0830.2_shift2 (TCF4)
; oligos_8nt_mkv5_m17 versus MA0830.2 (TCF4); m=8/47; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.706243; --cggCACCTGccss- ; cor=; Ncor= a 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 c 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 g 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 t 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0

MA1641.1_rc_shift2 (MYF5_rc)
; oligos_8nt_mkv5_m17 versus MA1641.1_rc (MYF5_rc); m=9/47; ncol2=12; w=12; offset=0; strand=R; shift=2; score=0.700932; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA1631.1_shift2 (ASCL1(var.2))
; oligos_8nt_mkv5_m17 versus MA1631.1 (ASCL1(var.2)); m=10/47; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.695972; --cdgCACCTGCysc- ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0

MA1619.1_shift2 (Ptf1a(var.2))
; oligos_8nt_mkv5_m17 versus MA1619.1 (Ptf1a(var.2)); m=11/47; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.695489; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; oligos_8nt_mkv5_m17 versus MA1485.1_rc (FERD3L_rc); m=12/47; ncol2=14; w=13; offset=-1; strand=R; shift=1; score=0.67227; -GTrACAGCTGkyrC- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0

MA1105.2_rc_shift3 (GRHL2_rc)
; oligos_8nt_mkv5_m17 versus MA1105.2_rc (GRHL2_rc); m=13/47; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.668296; ---maAACCTGTTyt- ; cor=; Ncor= a 0 0 0 13946.0 17515.0 36906.0 36921.0 625.0 1247.0 5826.0 320.0 1260.0 1618.0 6264.0 8493.0 0 c 0 0 0 10536.0 7961.0 1220.0 748.0 39624.0 37226.0 485.0 609.0 2841.0 2646.0 10776.0 9161.0 0 g 0 0 0 8528.0 9341.0 2000.0 2331.0 987.0 581.0 1543.0 40446.0 712.0 1147.0 6996.0 9741.0 0 t 0 0 0 8868.0 7061.0 1752.0 1878.0 642.0 2824.0 34024.0 503.0 37065.0 36467.0 17842.0 14483.0 0

MA0521.1_rc_shift2 (Tcf12_rc)
; oligos_8nt_mkv5_m17 versus MA0521.1_rc (Tcf12_rc); m=14/47; ncol2=11; w=11; offset=0; strand=R; shift=2; score=0.664662; --cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1642.1_rc_shift2 (NEUROG2(var.2)_rc)
; oligos_8nt_mkv5_m17 versus MA1642.1_rc (NEUROG2(var.2)_rc); m=15/47; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.657673; --brCCATCTGtyyy- ; cor=; Ncor= a 0 0 7184.0 9704.0 4904.0 484.0 32515.0 275.0 2806.0 159.0 237.0 1750.0 4721.0 8378.0 7535.0 0 c 0 0 8709.0 7581.0 24998.0 33422.0 323.0 418.0 30392.0 301.0 317.0 8039.0 11114.0 10123.0 10813.0 0 g 0 0 9034.0 10441.0 2966.0 205.0 904.0 952.0 793.0 211.0 33559.0 8154.0 6467.0 6843.0 7353.0 0 t 0 0 9464.0 6665.0 1523.0 280.0 649.0 32746.0 400.0 33720.0 278.0 16448.0 12089.0 9047.0 8690.0 0

MA1618.1_shift2 (Ptf1a)
; oligos_8nt_mkv5_m17 versus MA1618.1 (Ptf1a); m=16/47; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.654273; --dmaCAGATGttkh- ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0

MA0500.2_shift2 (MYOG)
; oligos_8nt_mkv5_m17 versus MA0500.2 (MYOG); m=17/47; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.651389; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA0820.1_shift3 (FIGLA)
; oligos_8nt_mkv5_m17 versus MA0820.1 (FIGLA); m=18/47; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.648274; ---wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

MA1559.1_rc_shift3 (SNAI3_rc)
; oligos_8nt_mkv5_m17 versus MA1559.1_rc (SNAI3_rc); m=19/47; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.63517; ---trCACCTGyt--- ; cor=; Ncor= a 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 c 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 g 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 t 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0

MA0665.1_shift3 (MSC)
; oligos_8nt_mkv5_m17 versus MA0665.1 (MSC); m=20/47; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.633591; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0

MA0103.3_shift3 (ZEB1)
; oligos_8nt_mkv5_m17 versus MA0103.3 (ZEB1); m=21/47; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.626413; ---ssCACCTGsss-- ; cor=; Ncor= a 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 c 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 g 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 t 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0

MA0667.1_shift3 (MYF6)
; oligos_8nt_mkv5_m17 versus MA0667.1 (MYF6); m=22/47; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.615985; ---AACArCTGTY--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; oligos_8nt_mkv5_m17 versus MA1467.1_rc (ATOH1(var.2)_rc); m=23/47; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.613779; ---RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0

MA1558.1_rc_shift3 (SNAI1_rc)
; oligos_8nt_mkv5_m17 versus MA1558.1_rc (SNAI1_rc); m=24/47; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.601127; ---yrCACCTGyh--- ; cor=; Ncor= a 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 c 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 g 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 t 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0

MA1648.1_shift3 (TCF12(var.2))
; oligos_8nt_mkv5_m17 versus MA1648.1 (TCF12(var.2)); m=25/47; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.593378; ---ssCACCTGCys-- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; oligos_8nt_mkv5_m17 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=26/47; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.59171; ---rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0

MA0691.1_rc_shift3 (TFAP4_rc)
; oligos_8nt_mkv5_m17 versus MA0691.1_rc (TFAP4_rc); m=27/47; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.585498; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA0522.3_shift3 (TCF3)
; oligos_8nt_mkv5_m17 versus MA0522.3 (TCF3); m=28/47; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.58455; ---svCACCTGCss-- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0

MA1109.1_rc_shift1 (NEUROD1_rc)
; oligos_8nt_mkv5_m17 versus MA1109.1_rc (NEUROD1_rc); m=29/47; ncol2=13; w=12; offset=-1; strand=R; shift=1; score=0.567876; -syrCCATCTGtyc-- ; cor=; Ncor= a 0 525.0 451.0 580.0 168.0 31.0 2157.0 21.0 90.0 18.0 12.0 47.0 298.0 566.0 0 0 c 0 628.0 599.0 418.0 1962.0 2231.0 19.0 77.0 2152.0 16.0 13.0 494.0 906.0 726.0 0 0 g 0 591.0 540.0 911.0 93.0 7.0 51.0 150.0 24.0 7.0 2240.0 452.0 323.0 429.0 0 0 t 0 538.0 692.0 373.0 59.0 13.0 55.0 2034.0 16.0 2241.0 17.0 1289.0 755.0 561.0 0 0

MA0091.1_shift1 (TAL1::TCF3)
; oligos_8nt_mkv5_m17 versus MA0091.1 (TAL1::TCF3); m=30/47; ncol2=12; w=11; offset=-1; strand=D; shift=1; score=0.563615; -mgAmCAKMTGkT--- ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0

MA0816.1_rc_shift3 (Ascl2_rc)
; oligos_8nt_mkv5_m17 versus MA0816.1_rc (Ascl2_rc); m=31/47; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.559379; ---rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA0819.1_rc_shift3 (CLOCK_rc)
; oligos_8nt_mkv5_m17 versus MA0819.1_rc (CLOCK_rc); m=32/47; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.553564; ---raCACGTGTt--- ; cor=; Ncor= a 0 0 0 174.0 429.0 9.0 429.0 0.0 28.0 0.0 2.0 13.0 75.0 0 0 0 c 0 0 0 39.0 110.0 429.0 5.0 429.0 0.0 15.0 2.0 89.0 93.0 0 0 0 g 0 0 0 128.0 152.0 3.0 5.0 0.0 429.0 5.0 429.0 85.0 35.0 0 0 0 t 0 0 0 89.0 1.0 0.0 3.0 40.0 16.0 429.0 11.0 429.0 226.0 0 0 0

MA1570.1_rc_shift3 (TFAP4(var.2)_rc)
; oligos_8nt_mkv5_m17 versus MA1570.1_rc (TFAP4(var.2)_rc); m=33/47; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.546836; ---amCAyrTGdt--- ; cor=; Ncor= a 0 0 0 479.0 206.0 0.0 479.0 0.0 479.0 0.0 0.0 129.0 39.0 0 0 0 c 0 0 0 110.0 156.0 479.0 0.0 287.0 161.0 14.0 0.0 0.0 197.0 0 0 0 g 0 0 0 210.0 14.0 3.0 0.0 149.0 220.0 0.0 479.0 144.0 130.0 0 0 0 t 0 0 0 60.0 103.0 0.0 0.0 479.0 0.0 479.0 0.0 217.0 479.0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; oligos_8nt_mkv5_m17 versus MA1100.2_rc (ASCL1_rc); m=34/47; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.545819; ---rgCAGCTGyy--- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0

MA1635.1_rc_shift3 (BHLHE22(var.2)_rc)
; oligos_8nt_mkv5_m17 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=35/47; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.522103; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA1638.1_rc_shift3 (HAND2_rc)
; oligos_8nt_mkv5_m17 versus MA1638.1_rc (HAND2_rc); m=36/47; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.512999; ---rvCATCTGkt--- ; cor=; Ncor= a 0 0 0 7783.0 8498.0 49.0 27962.0 23.0 85.0 4.0 70.0 3155.0 7120.0 0 0 0 c 0 0 0 6108.0 8878.0 29851.0 31.0 38.0 30144.0 647.0 132.0 6994.0 7463.0 0 0 0 g 0 0 0 10227.0 7690.0 149.0 2276.0 30.0 42.0 410.0 30062.0 11298.0 5564.0 0 0 0 t 0 0 0 6165.0 5217.0 234.0 14.0 30192.0 12.0 29222.0 19.0 8836.0 10136.0 0 0 0

MA0807.1_rc_shift2 (TBX5_rc)
; oligos_8nt_mkv5_m17 versus MA0807.1_rc (TBX5_rc); m=37/47; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.508231; --TmACACCT------ ; cor=; Ncor= a 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 c 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 g 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 t 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0

MA0806.1_rc_shift2 (TBX4_rc)
; oligos_8nt_mkv5_m17 versus MA0806.1_rc (TBX4_rc); m=38/47; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.500559; --TcACACCT------ ; cor=; Ncor= a 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 0 0 c 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 0 0 g 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 0 0 t 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0 0 0

MA0803.1_rc_shift2 (TBX15_rc)
; oligos_8nt_mkv5_m17 versus MA0803.1_rc (TBX15_rc); m=39/47; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.487674; --TCACACCT------ ; cor=; Ncor= a 0 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 0 0 0 0 0 c 0 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 0 0 0 0 0 g 0 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 0 0 0 0 0 t 0 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0 0 0 0 0 0

MA0805.1_rc_shift2 (TBX1_rc)
; oligos_8nt_mkv5_m17 versus MA0805.1_rc (TBX1_rc); m=40/47; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.475338; --TCACACCT------ ; cor=; Ncor= a 0 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 0 0 0 c 0 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 0 0 0 g 0 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 0 0 0 t 0 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0 0 0 0

MA0801.1_rc_shift2 (MGA_rc)
; oligos_8nt_mkv5_m17 versus MA0801.1_rc (MGA_rc); m=41/47; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.464507; --TCACACCT------ ; cor=; Ncor= a 0 0 274.0 6465.0 30489.0 11.0 30489.0 104.0 1929.0 4160.0 0 0 0 0 0 0 c 0 0 920.0 30489.0 381.0 30489.0 96.0 30489.0 30489.0 8873.0 0 0 0 0 0 0 g 0 0 110.0 1753.0 3089.0 1.0 3534.0 509.0 3737.0 1151.0 0 0 0 0 0 0 t 0 0 30489.0 689.0 1042.0 14.0 12.0 16.0 4310.0 30489.0 0 0 0 0 0 0

MA1567.1_rc_shift1 (TBX6_rc)
; oligos_8nt_mkv5_m17 versus MA1567.1_rc (TBX6_rc); m=42/47; ncol2=10; w=9; offset=-1; strand=R; shift=1; score=0.450989; -tTmACACcty----- ; cor=; Ncor= a 0 2330.0 713.0 5964.0 11087.0 12.0 11087.0 0.0 1058.0 2157.0 2456.0 0 0 0 0 0 c 0 2141.0 2251.0 11087.0 320.0 11087.0 0.0 11087.0 11087.0 3347.0 4003.0 0 0 0 0 0 g 0 2066.0 652.0 4876.0 3053.0 0.0 1002.0 63.0 2913.0 1173.0 1630.0 0 0 0 0 0 t 0 4550.0 11087.0 1430.0 552.0 14.0 44.0 58.0 1882.0 11087.0 2998.0 0 0 0 0 0

MA1566.1_rc_shift1 (TBX3_rc)
; oligos_8nt_mkv5_m17 versus MA1566.1_rc (TBX3_rc); m=43/47; ncol2=10; w=9; offset=-1; strand=R; shift=1; score=0.443074; -ttsACACcty----- ; cor=; Ncor= a 0 578.0 484.0 1112.0 2544.0 0.0 2544.0 0.0 302.0 760.0 497.0 0 0 0 0 0 c 0 620.0 947.0 2544.0 155.0 2544.0 0.0 2544.0 2544.0 1207.0 1003.0 0 0 0 0 0 g 0 586.0 410.0 1471.0 634.0 0.0 735.0 45.0 862.0 481.0 399.0 0 0 0 0 0 t 0 760.0 2544.0 170.0 115.0 0.0 16.0 6.0 427.0 2544.0 644.0 0 0 0 0 0

MA0690.1_rc_shift1 (TBX21_rc)
; oligos_8nt_mkv5_m17 versus MA0690.1_rc (TBX21_rc); m=44/47; ncol2=10; w=9; offset=-1; strand=R; shift=1; score=0.420143; -TTCACACCTt----- ; cor=; Ncor= a 0 1287.0 0.0 364.0 4395.0 2.0 4395.0 33.0 398.0 146.0 872.0 0 0 0 0 0 c 0 317.0 38.0 4395.0 34.0 4395.0 16.0 4395.0 4395.0 359.0 937.0 0 0 0 0 0 g 0 441.0 0.0 126.0 331.0 0.0 180.0 17.0 239.0 30.0 263.0 0 0 0 0 0 t 0 4395.0 4395.0 80.0 185.0 1.0 6.0 2.0 612.0 4395.0 2322.0 0 0 0 0 0

MA0802.1_rc_shift0 (TBR1_rc)
; oligos_8nt_mkv5_m17 versus MA0802.1_rc (TBR1_rc); m=45/47; ncol2=10; w=8; offset=-2; strand=R; shift=0; score=0.417382; tTTCACACCT------ ; cor=; Ncor= a 5846.0 4576.0 205.0 7001.0 34509.0 4.0 34509.0 213.0 4480.0 1433.0 0 0 0 0 0 0 c 4537.0 1488.0 584.0 34509.0 157.0 34509.0 88.0 34509.0 34509.0 3329.0 0 0 0 0 0 0 g 5619.0 2575.0 90.0 2551.0 4742.0 6.0 1759.0 254.0 3255.0 359.0 0 0 0 0 0 0 t 18507.0 25869.0 34509.0 1175.0 2386.0 0.0 39.0 70.0 6880.0 34509.0 0 0 0 0 0 0

MA0688.1_rc_shift0 (TBX2_rc)
; oligos_8nt_mkv5_m17 versus MA0688.1_rc (TBX2_rc); m=46/47; ncol2=11; w=9; offset=-2; strand=R; shift=0; score=0.410736; ttTcACACCTw----- ; cor=; Ncor= a 667.0 656.0 120.0 1409.0 3181.0 12.0 3181.0 14.0 353.0 442.0 804.0 0 0 0 0 0 c 590.0 527.0 125.0 3181.0 27.0 3181.0 21.0 3181.0 3181.0 716.0 717.0 0 0 0 0 0 g 446.0 491.0 26.0 1289.0 392.0 0.0 329.0 36.0 519.0 59.0 402.0 0 0 0 0 0 t 1477.0 2525.0 3181.0 310.0 307.0 26.0 0.0 9.0 602.0 3181.0 1258.0 0 0 0 0 0

MA0622.1_shift4 (Mlxip)
; oligos_8nt_mkv5_m17 versus MA0622.1 (Mlxip); m=47/47; ncol2=8; w=8; offset=2; strand=D; shift=4; score=0.406704; ----bCACGTGk---- ; cor=; Ncor= a 0 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 0 0 0 0 c 0 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 0 0 0 0 g 0 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 0 0 0 0 t 0 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m35_shift6 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m35_shift6 (oligos_8nt_mkv5_m35oligos_8nt_mkv5_m35)
; oligos_8nt_mkv5_m35 (oligos_8nt_mkv5_m35oligos_8nt_mkv5_m35); m=0 (reference); ncol1=12; shift=6; ncol=20; ------krGGAGGTGAmr-- ; Alignment reference a 0 0 0 0 0 0 28 41 1 0 146 4 7 5 7 155 43 47 0 0 c 0 0 0 0 0 0 34 37 5 4 8 29 0 4 2 1 65 35 0 0 g 0 0 0 0 0 0 51 57 155 155 5 128 151 8 146 4 40 50 0 0 t 0 0 0 0 0 0 49 27 1 3 3 1 4 145 7 2 14 30 0 0

MA1652.1_shift5 (ZKSCAN5)
; oligos_8nt_mkv5_m35 versus MA1652.1 (ZKSCAN5); m=1/10; ncol2=14; w=12; offset=-1; strand=D; shift=5; score=0.803692; -----rgaGGArGTGAgrr- ; cor=; Ncor= a 0 0 0 0 0 870.0 822.0 1510.0 136.0 38.0 3199.0 1446.0 92.0 73.0 43.0 3199.0 375.0 1268.0 1169.0 0 c 0 0 0 0 0 636.0 704.0 315.0 30.0 27.0 62.0 27.0 37.0 86.0 24.0 41.0 370.0 504.0 569.0 0 g 0 0 0 0 0 1161.0 1197.0 801.0 3111.0 3236.0 47.0 1827.0 3149.0 76.0 3251.0 62.0 2034.0 1078.0 1052.0 0 t 0 0 0 0 0 660.0 604.0 701.0 50.0 26.0 19.0 27.0 49.0 3092.0 9.0 25.0 548.0 477.0 537.0 0

MA1522.1_rc_shift6 (MAZ_rc)
; oligos_8nt_mkv5_m35 versus MA1522.1_rc (MAZ_rc); m=2/10; ncol2=11; w=11; offset=0; strand=R; shift=6; score=0.672046; ------ggGGAGGGGss--- ; cor=; Ncor= a 0 0 0 0 0 0 3733.0 2814.0 0.0 4.0 14927.0 1.0 6.0 0.0 26.0 3013.0 3108.0 0 0 0 c 0 0 0 0 0 0 2539.0 1768.0 96.0 8.0 130.0 347.0 290.0 384.0 75.0 5163.0 4277.0 0 0 0 g 0 0 0 0 0 0 6775.0 9372.0 14944.0 14961.0 0.0 14676.0 14731.0 14630.0 14945.0 5068.0 5198.0 0 0 0 t 0 0 0 0 0 0 2016.0 1109.0 23.0 90.0 6.0 39.0 36.0 49.0 17.0 1819.0 2480.0 0 0 0

MA1648.1_rc_shift6 (TCF12(var.2)_rc)
; oligos_8nt_mkv5_m35 versus MA1648.1_rc (TCF12(var.2)_rc); m=3/10; ncol2=11; w=11; offset=0; strand=R; shift=6; score=0.649551; ------srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0

MA0522.3_rc_shift6 (TCF3_rc)
; oligos_8nt_mkv5_m35 versus MA0522.3_rc (TCF3_rc); m=4/10; ncol2=11; w=11; offset=0; strand=R; shift=6; score=0.647739; ------ssGCAGGTGbs--- ; cor=; Ncor= a 0 0 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 c 0 0 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 g 0 0 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 t 0 0 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0

MA1653.1_rc_shift5 (ZNF148_rc)
; oligos_8nt_mkv5_m35 versus MA1653.1_rc (ZNF148_rc); m=5/10; ncol2=12; w=11; offset=-1; strand=R; shift=5; score=0.600963; -----ggGGGAGGGGsr--- ; cor=; Ncor= a 0 0 0 0 0 1180.0 1190.0 1082.0 465.0 67.0 10040.0 66.0 136.0 200.0 113.0 2664.0 2966.0 0 0 0 c 0 0 0 0 0 2064.0 1924.0 392.0 460.0 112.0 1012.0 211.0 401.0 471.0 205.0 3215.0 2241.0 0 0 0 g 0 0 0 0 0 7114.0 7239.0 9283.0 9922.0 10954.0 14.0 10833.0 10526.0 10396.0 10799.0 4057.0 4593.0 0 0 0 t 0 0 0 0 0 841.0 846.0 442.0 352.0 66.0 133.0 89.0 136.0 132.0 82.0 1263.0 1399.0 0 0 0

MA0081.2_rc_shift2 (SPIB_rc)
; oligos_8nt_mkv5_m35 versus MA0081.2_rc (SPIB_rc); m=6/10; ncol2=16; w=12; offset=-4; strand=R; shift=2; score=0.565065; --raaaGAGGAAGTGara-- ; cor=; Ncor= a 0 0 10150.0 14333.0 16580.0 17264.0 3481.0 19719.0 1034.0 426.0 26297.0 26087.0 1445.0 1323.0 859.0 15129.0 9411.0 11760.0 0 0 c 0 0 4165.0 2409.0 2087.0 781.0 2316.0 1829.0 129.0 153.0 243.0 157.0 2516.0 669.0 1721.0 3193.0 4544.0 4026.0 0 0 g 0 0 8589.0 6029.0 5425.0 3922.0 20113.0 4517.0 25492.0 26145.0 200.0 236.0 22730.0 619.0 23971.0 6429.0 8293.0 5797.0 0 0 t 0 0 4026.0 4159.0 2838.0 4963.0 1020.0 865.0 275.0 206.0 190.0 450.0 239.0 24319.0 379.0 2179.0 4682.0 5347.0 0 0

MA0645.1_shift5 (ETV6)
; oligos_8nt_mkv5_m35 versus MA0645.1 (ETV6); m=7/10; ncol2=10; w=9; offset=-1; strand=D; shift=5; score=0.501194; -----msCGGAAGTr----- ; cor=; Ncor= a 0 0 0 0 0 9414.0 342.0 1476.0 7.0 21.0 6687.0 6687.0 768.0 184.0 2049.0 0 0 0 0 0 c 0 0 0 0 0 6562.0 2394.0 6379.0 0.0 0.0 0.0 13.0 52.0 834.0 342.0 0 0 0 0 0 g 0 0 0 0 0 4684.0 4292.0 397.0 6687.0 6687.0 7.0 32.0 6687.0 233.0 3205.0 0 0 0 0 0 t 0 0 0 0 0 2002.0 441.0 308.0 13.0 22.0 0.0 41.0 0.0 6687.0 1091.0 0 0 0 0 0

MA0807.1_shift10 (TBX5)
; oligos_8nt_mkv5_m35 versus MA0807.1 (TBX5); m=8/10; ncol2=8; w=8; offset=4; strand=D; shift=10; score=0.478774; ----------AGGTGTkA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 0 0 c 0 0 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 0 0 g 0 0 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 0 0 t 0 0 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0 0 0

MA0806.1_shift10 (TBX4)
; oligos_8nt_mkv5_m35 versus MA0806.1 (TBX4); m=9/10; ncol2=8; w=8; offset=4; strand=D; shift=10; score=0.472259; ----------AGGTGTgA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 0 0 c 0 0 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 0 0 g 0 0 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 0 0 t 0 0 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0 0 0

MA0080.5_shift0 (SPI1)
; oligos_8nt_mkv5_m35 versus MA0080.5 (SPI1); m=10/10; ncol2=20; w=12; offset=-6; strand=D; shift=0; score=0.443553; rrraaAGAGGAAGTGAaarw ; cor=; Ncor= a 42201.0 48240.0 54154.0 78831.0 81904.0 99739.0 15301.0 113087.0 5230.0 3323.0 129177.0 127888.0 11279.0 13931.0 11028.0 90925.0 60831.0 59460.0 39411.0 42838.0 c 22587.0 21262.0 20183.0 11424.0 12269.0 2914.0 10958.0 3425.0 568.0 954.0 1339.0 792.0 9931.0 3717.0 12697.0 11316.0 20113.0 16927.0 26246.0 24884.0 g 38405.0 34277.0 37341.0 25893.0 25580.0 13479.0 100825.0 12544.0 125703.0 127639.0 1407.0 1308.0 109802.0 7231.0 103485.0 20647.0 30577.0 29188.0 34829.0 28335.0 t 30010.0 29424.0 21525.0 17055.0 13450.0 17071.0 6119.0 4147.0 1702.0 1287.0 1280.0 3215.0 2191.0 108324.0 5993.0 10315.0 21682.0 27628.0 32717.0 37146.0

One-to-n matrix alignment; reference matrix: dyads_m12_shift0 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m12_shift0 (dyads_m12dyads_m12)
; dyads_m12 (dyads_m12dyads_m12); m=0 (reference); ncol1=15; shift=0; ncol=20; ssAGCAsCTGTCAsy----- ; Alignment reference a 44 38 167 5 2 225 4 1 1 0 3 1 155 19 38 0 0 0 0 0 c 60 92 25 14 221 0 124 224 2 0 9 208 27 90 77 0 0 0 0 0 g 76 62 12 203 1 0 91 0 0 225 6 5 32 70 52 0 0 0 0 0 t 45 33 21 3 1 0 6 0 222 0 207 11 11 46 58 0 0 0 0 0

MA0499.2_shift1 (MYOD1)
; dyads_m12 versus MA0499.2 (MYOD1); m=1/33; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.801725; -cwgCACCTGTymy------ ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 0 0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 0 0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 0 0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0 0 0 0

MA0745.2_shift1 (SNAI2)
; dyads_m12 versus MA0745.2 (SNAI2); m=2/33; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.74457; -aygCACCTGTmry------ ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 0 0 0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 0 0 0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 0 0 0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0 0 0 0 0

MA1621.1_shift0 (Rbpjl)
; dyads_m12 versus MA1621.1 (Rbpjl); m=3/33; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.741159; svmaCACCTGtsyc------ ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 0 0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 0 0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 0 0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0 0 0 0

MA0830.2_shift1 (TCF4)
; dyads_m12 versus MA0830.2 (TCF4); m=4/33; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.685469; -cggCACCTGccss------ ; cor=; Ncor= a 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 0 0 0 0 c 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 0 0 0 0 g 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 0 0 0 0 t 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0 0 0 0 0

MA1485.1_shift0 (FERD3L)
; dyads_m12 versus MA1485.1 (FERD3L); m=5/33; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.679399; GyrmCAGCTGTyAC------ ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 0 0 0 0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 0 0 0 0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 0 0 0 0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0 0 0 0 0

MA1631.1_shift1 (ASCL1(var.2))
; dyads_m12 versus MA1631.1 (ASCL1(var.2)); m=6/33; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.667341; -cdgCACCTGCysc------ ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 0 0 0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 0 0 0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 0 0 0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0 0 0 0

MA0832.1_rc_shift0 (Tcf21_rc)
; dyads_m12 versus MA0832.1_rc (Tcf21_rc); m=7/33; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.658441; ryAACAGCTGTTry------ ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 0 0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 0 0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 0 0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; dyads_m12 versus MA0521.1_rc (Tcf12_rc); m=8/33; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.632111; -cwsCAGCTGYy-------- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0 0

MA1618.1_rc_shift0 (Ptf1a_rc)
; dyads_m12 versus MA1618.1_rc (Ptf1a_rc); m=9/33; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.626239; dmaaCATCTGtkh------- ; cor=; Ncor= a 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 0 0 0 0 c 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 0 0 0 0 g 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 0 0 0 0 t 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0 0 0 0 0

MA0500.2_rc_shift1 (MYOG_rc)
; dyads_m12 versus MA0500.2_rc (MYOG_rc); m=10/33; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.615835; -sarCAGCTGyts------- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0 0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0 0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0 0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0 0 0

MA1620.1_shift1 (Ptf1a(var.3))
; dyads_m12 versus MA1620.1 (Ptf1a(var.3)); m=11/33; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.615437; -rmaCACCTGtky------- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 0 0 0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 0 0 0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 0 0 0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0 0 0 0 0

MA1641.1_rc_shift1 (MYF5_rc)
; dyads_m12 versus MA1641.1_rc (MYF5_rc); m=12/33; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.602158; -gvaCAGCTGtbc------- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 0 0 0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 0 0 0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0 0 0 0 0

MA1619.1_shift1 (Ptf1a(var.2))
; dyads_m12 versus MA1619.1 (Ptf1a(var.2)); m=13/33; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.597086; -rmaCAGCTGtky------- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0 0 0

MA0783.1_rc_shift1 (PKNOX2_rc)
; dyads_m12 versus MA0783.1_rc (PKNOX2_rc); m=14/33; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.570707; -TGACAsCTGTCA------- ; cor=; Ncor= a 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 0 0 0 0 c 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 0 0 0 0 g 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 0 0 0 0 t 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0 0 0 0 0

MA0797.1_rc_shift1 (TGIF2_rc)
; dyads_m12 versus MA0797.1_rc (TGIF2_rc); m=15/33; ncol2=12; w=12; offset=1; strand=R; shift=1; score= 0.5646; -TGACAsCTGTCA------- ; cor=; Ncor= a 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 0 0 0 0 c 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 0 0 0 0 g 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 0 0 0 0 t 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0 0 0 0 0

MA1467.1_shift2 (ATOH1(var.2))
; dyads_m12 versus MA1467.1 (ATOH1(var.2)); m=16/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.55224; --AACAGCTGTY-------- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0 0 0

MA1100.2_shift2 (ASCL1)
; dyads_m12 versus MA1100.2 (ASCL1); m=17/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.542118; --rrCAGCTGcy-------- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 0 0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 0 0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 0 0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0 0 0 0 0

MA1559.1_rc_shift2 (SNAI3_rc)
; dyads_m12 versus MA1559.1_rc (SNAI3_rc); m=18/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.536579; --trCACCTGyt-------- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 0 0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 0 0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 0 0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0 0 0 0 0

MA0816.1_shift2 (Ascl2)
; dyads_m12 versus MA0816.1 (Ascl2); m=19/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.534797; --arCAGCTGyy-------- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0 0 0

MA1472.1_shift2 (BHLHA15(var.2))
; dyads_m12 versus MA1472.1 (BHLHA15(var.2)); m=20/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.531319; --avCAGCTGyy-------- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0 0 0 0

MA0103.3_shift2 (ZEB1)
; dyads_m12 versus MA0103.3 (ZEB1); m=21/33; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.527687; --ssCACCTGsss------- ; cor=; Ncor= a 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 0 0 0 0 c 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 0 0 0 0 g 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 0 0 0 0 t 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0 0 0 0 0

MA0820.1_shift2 (FIGLA)
; dyads_m12 versus MA0820.1 (FIGLA); m=22/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.527069; --wmCACCTGkw-------- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0 0 0 0

MA1558.1_rc_shift2 (SNAI1_rc)
; dyads_m12 versus MA1558.1_rc (SNAI1_rc); m=23/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.52449; --yrCACCTGyh-------- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 0 0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 0 0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 0 0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0 0 0 0 0

MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; dyads_m12 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=24/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.503017; --csCAGCTGsg-------- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0 0 0

MA0665.1_rc_shift2 (MSC_rc)
; dyads_m12 versus MA0665.1_rc (MSC_rc); m=25/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.500133; --AACAGCTGTT-------- ; cor=; Ncor= a 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 0 0 0 0 c 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 0 0 0 0 g 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 0 0 0 0 t 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0 0 0 0 0

MA0774.1_rc_shift6 (MEIS2_rc)
; dyads_m12 versus MA0774.1_rc (MEIS2_rc); m=26/33; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.499722; ------sCTGTCAa------ ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 0 0 0 0 0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 0 0 0 0 0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 0 0 0 0 0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0 0 0 0 0 0

MA0667.1_shift2 (MYF6)
; dyads_m12 versus MA0667.1 (MYF6); m=27/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.499513; --AACArCTGTY-------- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 0 0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 0 0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 0 0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0 0 0 0 0

MA0775.1_rc_shift6 (MEIS3_rc)
; dyads_m12 versus MA0775.1_rc (MEIS3_rc); m=28/33; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.48763; ------scTGTCAw------ ; cor=; Ncor= a 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 0 0 0 0 0 c 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 0 0 0 0 0 g 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 0 0 0 0 0 t 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0 0 0 0 0 0

MA0048.2_shift2 (NHLH1)
; dyads_m12 versus MA0048.2 (NHLH1); m=29/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.487141; --cGCAGCTGCk-------- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0 0 0 0

MA0691.1_rc_shift2 (TFAP4_rc)
; dyads_m12 versus MA0691.1_rc (TFAP4_rc); m=30/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.476544; --AwCAGCTGwT-------- ; cor=; Ncor= a 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 0 0 0 0 c 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 0 0 0 0 g 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 0 0 0 0 t 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0 0 0 0 0

MA0782.2_rc_shift4 (PKNOX1_rc)
; dyads_m12 versus MA0782.2_rc (PKNOX1_rc); m=31/33; ncol2=15; w=11; offset=4; strand=R; shift=4; score=0.434483; ----yagCTGTCAcTCAwa- ; cor=; Ncor= a 0 0 0 0 9877.0 12900.0 6042.0 5092.0 2629.0 886.0 720.0 691.0 36918.0 7333.0 1196.0 1043.0 29794.0 10355.0 11050.0 0 c 0 0 0 0 10296.0 9060.0 9128.0 27367.0 2408.0 580.0 2459.0 37713.0 1027.0 26182.0 1330.0 36106.0 3322.0 9535.0 9599.0 0 g 0 0 0 0 9268.0 9386.0 16341.0 4759.0 944.0 37846.0 410.0 1004.0 878.0 4123.0 678.0 1160.0 1625.0 9828.0 9503.0 0 t 0 0 0 0 10522.0 8617.0 8452.0 2745.0 33982.0 651.0 36374.0 555.0 1140.0 2325.0 36759.0 1654.0 5222.0 10245.0 9811.0 0

MA1114.1_rc_shift3 (PBX3_rc)
; dyads_m12 versus MA1114.1_rc (PBX3_rc); m=32/33; ncol2=17; w=12; offset=3; strand=R; shift=3; score=0.432491; ---sygcCTGTCACTCAvmc ; cor=; Ncor= a 0 0 0 1508.0 1465.0 1525.0 683.0 549.0 376.0 138.0 145.0 83.0 6290.0 969.0 256.0 160.0 5697.0 1924.0 1853.0 1523.0 c 0 0 0 2217.0 2068.0 1591.0 4077.0 5691.0 425.0 209.0 604.0 6550.0 285.0 4929.0 214.0 6406.0 503.0 1928.0 1934.0 2192.0 g 0 0 0 1801.0 1619.0 2654.0 1377.0 412.0 129.0 6524.0 108.0 242.0 199.0 788.0 125.0 227.0 225.0 1849.0 1724.0 1711.0 t 0 0 0 1495.0 1869.0 1251.0 884.0 369.0 6091.0 150.0 6164.0 146.0 247.0 335.0 6426.0 228.0 596.0 1320.0 1510.0 1595.0

MA0498.2_rc_shift7 (MEIS1_rc)
; dyads_m12 versus MA0498.2_rc (MEIS1_rc); m=33/33; ncol2=7; w=7; offset=7; strand=R; shift=7; score=0.420141; -------cTGTCAw------ ; cor=; Ncor= a 0 0 0 0 0 0 0 15106.0 3861.0 1155.0 0.0 0.0 77159.0 24921.0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 29965.0 9263.0 0.0 672.0 77159.0 3174.0 9714.0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 14864.0 0.0 77159.0 2903.0 1249.0 5575.0 18797.0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 17224.0 77159.0 0.0 77159.0 0.0 8690.0 23727.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m4_shift3 ; 19 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m4_shift3 (oligos_8nt_mkv5_m4oligos_8nt_mkv5_m4)
; oligos_8nt_mkv5_m4 (oligos_8nt_mkv5_m4oligos_8nt_mkv5_m4); m=0 (reference); ncol1=14; shift=3; ncol=17; ---ccCCCCyCCCCCcc ; Alignment reference a 0 0 0 84 90 4 7 2 8 66 3 5 7 10 27 136 82 c 0 0 0 468 439 718 717 748 738 326 742 738 725 728 708 421 453 g 0 0 0 98 131 22 4 2 1 36 8 3 6 4 11 83 132 t 0 0 0 109 99 15 31 7 12 331 6 13 21 17 13 119 92

MA1653.1_shift3 (ZNF148)
; oligos_8nt_mkv5_m4 versus MA1653.1 (ZNF148); m=1/18; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.800477; ---ysCCCCTCCCcc-- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0

MA0753.2_shift4 (ZNF740)
; oligos_8nt_mkv5_m4 versus MA0753.2 (ZNF740); m=2/18; ncol2=13; w=13; offset=1; strand=D; shift=4; score=0.768448; ----cyrCCCCCCCCAc ; cor=; Ncor= a 0 0 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 c 0 0 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 g 0 0 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 t 0 0 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0

MA1522.1_shift3 (MAZ)
; oligos_8nt_mkv5_m4 versus MA1522.1 (MAZ); m=3/18; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.702027; ---ssCCCCTCCcc--- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0

MA0039.4_shift3 (KLF4)
; oligos_8nt_mkv5_m4 versus MA0039.4 (KLF4); m=4/18; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.696295; ---ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0

MA0746.2_shift3 (SP3)
; oligos_8nt_mkv5_m4 versus MA0746.2 (SP3); m=5/18; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.663677; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0

MA1564.1_shift4 (SP9)
; oligos_8nt_mkv5_m4 versus MA1564.1 (SP9); m=6/18; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.649772; ----rcCmCGCCCmcy- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0

MA1513.1_shift4 (KLF15)
; oligos_8nt_mkv5_m4 versus MA1513.1 (KLF15); m=7/18; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.63726; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0

MA0741.1_shift4 (KLF16)
; oligos_8nt_mkv5_m4 versus MA0741.1 (KLF16); m=8/18; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.635469; ----gmCMCgCCCMC-- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0

MA0747.1_shift4 (SP8)
; oligos_8nt_mkv5_m4 versus MA0747.1 (SP8); m=9/18; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.628871; ----rmCACgCCCmCy- ; cor=; Ncor= a 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 c 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 g 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 t 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0

MA0599.1_shift4 (KLF5)
; oligos_8nt_mkv5_m4 versus MA0599.1 (KLF5); m=10/18; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.622836; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA1627.1_shift5 (Wt1)
; oligos_8nt_mkv5_m4 versus MA1627.1 (Wt1); m=11/18; ncol2=14; w=12; offset=2; strand=D; shift=5; score=0.61544; -----cycCTCCCCCAC ; cor=; Ncor= a 0 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 c 0 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 g 0 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 t 0 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0

MA0528.2_rc_shift4 (ZNF263_rc)
; oligos_8nt_mkv5_m4 versus MA0528.2_rc (ZNF263_rc); m=12/18; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.60952; ----csTCCTCCCcsc- ; cor=; Ncor= a 0 0 0 0 11103.0 6566.0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 8247.0 12535.0 9733.0 0 c 0 0 0 0 25115.0 24825.0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 28912.0 17883.0 20283.0 0 g 0 0 0 0 11689.0 15413.0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 6183.0 14909.0 13040.0 0 t 0 0 0 0 8436.0 9539.0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 13001.0 11016.0 13287.0 0

MA0516.2_shift0 (SP2)
; oligos_8nt_mkv5_m4 versus MA0516.2 (SP2); m=13/18; ncol2=17; w=14; offset=-3; strand=D; shift=0; score=0.602657; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0

MA1515.1_shift3 (KLF2)
; oligos_8nt_mkv5_m4 versus MA1515.1 (KLF2); m=14/18; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.580738; ---srCCmCrCCCw--- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0

MA1578.1_shift7 (VEZF1)
; oligos_8nt_mkv5_m4 versus MA1578.1 (VEZF1); m=15/18; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.577615; -------CCCCCCmytw ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0

MA1630.1_rc_shift7 (Znf281_rc)
; oligos_8nt_mkv5_m4 versus MA1630.1_rc (Znf281_rc); m=16/18; ncol2=11; w=10; offset=4; strand=R; shift=7; score=0.569088; -------CcTCCCCCAc ; cor=; Ncor= a 0 0 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 c 0 0 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 g 0 0 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 t 0 0 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0

MA1512.1_shift4 (KLF11)
; oligos_8nt_mkv5_m4 versus MA1512.1 (KLF11); m=17/18; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.565214; ----gcCACGCCCmC-- ; cor=; Ncor= a 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 c 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 g 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 t 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0

MA0057.1_rc_shift2 (MZF1(var.2)_rc)
; oligos_8nt_mkv5_m4 versus MA0057.1_rc (MZF1(var.2)_rc); m=18/18; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.453544; --yymCCCMTmv----- ; cor=; Ncor= a 0 0 2.0 2.0 4.0 2.0 0.0 1.0 5.0 0.0 7.0 4.0 0 0 0 0 0 c 0 0 4.0 4.0 8.0 14.0 14.0 15.0 11.0 0.0 7.0 7.0 0 0 0 0 0 g 0 0 2.0 0.0 1.0 0.0 2.0 0.0 0.0 1.0 0.0 4.0 0 0 0 0 0 t 0 0 8.0 10.0 3.0 0.0 0.0 0.0 0.0 15.0 2.0 1.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m40_shift2 ; 26 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m40_shift2 (oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40)
; oligos_8nt_mkv5_m40 (oligos_8nt_mkv5_m40oligos_8nt_mkv5_m40); m=0 (reference); ncol1=12; shift=2; ncol=14; --rsAGCAGATGgc ; Alignment reference a 0 0 54 40 186 19 4 192 6 195 1 7 38 39 c 0 0 45 51 4 4 177 2 2 0 5 2 47 66 g 0 0 63 60 7 171 7 4 181 2 2 187 71 47 t 0 0 36 47 1 4 10 0 9 1 190 2 42 46

MA1642.1_shift2 (NEUROG2(var.2))
; oligos_8nt_mkv5_m40 versus MA1642.1 (NEUROG2(var.2)); m=1/25; ncol2=13; w=12; offset=0; strand=D; shift=2; score=0.800035; --rrraCAGATGGy ; cor=; Ncor= a 0 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 c 0 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 g 0 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 t 0 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0

MA1638.1_shift4 (HAND2)
; oligos_8nt_mkv5_m40 versus MA1638.1 (HAND2); m=2/25; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.737329; ----amCAGATGby ; cor=; Ncor= a 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 c 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 g 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 t 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0

MA1123.2_shift2 (TWIST1)
; oligos_8nt_mkv5_m40 versus MA1123.2 (TWIST1); m=3/25; ncol2=13; w=12; offset=0; strand=D; shift=2; score=0.719376; --awwCCAGATGtb ; cor=; Ncor= a 0 0 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 c 0 0 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 g 0 0 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 t 0 0 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; oligos_8nt_mkv5_m40 versus MA1631.1_rc (ASCL1(var.2)_rc); m=4/25; ncol2=13; w=12; offset=0; strand=R; shift=2; score=0.679179; --gsrGCAGGTGch ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; oligos_8nt_mkv5_m40 versus MA1648.1_rc (TCF12(var.2)_rc); m=5/25; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.677482; ---srGCAGGTGss ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0

MA0522.3_rc_shift3 (TCF3_rc)
; oligos_8nt_mkv5_m40 versus MA0522.3_rc (TCF3_rc); m=6/25; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.673692; ---ssGCAGGTGbs ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0

MA1109.1_shift3 (NEUROD1)
; oligos_8nt_mkv5_m40 versus MA1109.1 (NEUROD1); m=7/25; ncol2=13; w=11; offset=1; strand=D; shift=3; score=0.658595; ---graCAGATGGy ; cor=; Ncor= a 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 c 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 g 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 t 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0

MA0830.2_rc_shift2 (TCF4_rc)
; oligos_8nt_mkv5_m40 versus MA0830.2_rc (TCF4_rc); m=8/25; ncol2=13; w=12; offset=0; strand=R; shift=2; score=0.649125; --ssggCAGGTGcc ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0

MA1618.1_shift3 (Ptf1a)
; oligos_8nt_mkv5_m40 versus MA1618.1 (Ptf1a); m=9/25; ncol2=13; w=11; offset=1; strand=D; shift=3; score=0.644134; ---dmaCAGATGtt ; cor=; Ncor= a 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 c 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 g 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 t 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0

MA0816.1_rc_shift4 (Ascl2_rc)
; oligos_8nt_mkv5_m40 versus MA0816.1_rc (Ascl2_rc); m=10/25; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.63084; ----rrCAGCTGyt ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0

MA1472.1_shift4 (BHLHA15(var.2))
; oligos_8nt_mkv5_m40 versus MA1472.1 (BHLHA15(var.2)); m=11/25; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.630444; ----avCAGCTGyy ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0

MA1100.2_shift4 (ASCL1)
; oligos_8nt_mkv5_m40 versus MA1100.2 (ASCL1); m=12/25; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.624681; ----rrCAGCTGcy ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0

MA1468.1_shift4 (ATOH7)
; oligos_8nt_mkv5_m40 versus MA1468.1 (ATOH7); m=13/25; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.617315; ----AmCATATGky ; cor=; Ncor= a 0 0 0 0 712.0 302.0 0.0 712.0 15.0 712.0 0.0 0.0 5.0 17.0 c 0 0 0 0 97.0 211.0 712.0 0.0 106.0 180.0 25.0 0.0 155.0 400.0 g 0 0 0 0 142.0 154.0 0.0 102.0 59.0 78.0 25.0 712.0 261.0 2.0 t 0 0 0 0 62.0 45.0 0.0 58.0 712.0 0.0 712.0 0.0 291.0 312.0

MA0461.2_shift4 (Atoh1)
; oligos_8nt_mkv5_m40 versus MA0461.2 (Atoh1); m=14/25; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.615534; ----rmCATATGky ; cor=; Ncor= a 0 0 0 0 655.0 523.0 42.0 1027.0 17.0 1027.0 22.0 2.0 34.0 128.0 c 0 0 0 0 108.0 334.0 1027.0 20.0 10.0 74.0 4.0 1.0 234.0 494.0 g 0 0 0 0 372.0 149.0 8.0 34.0 136.0 0.0 5.0 1027.0 376.0 126.0 t 0 0 0 0 59.0 21.0 0.0 0.0 1027.0 0.0 1027.0 31.0 384.0 533.0

MA0818.1_rc_shift4 (BHLHE22_rc)
; oligos_8nt_mkv5_m40 versus MA0818.1_rc (BHLHE22_rc); m=15/25; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.610245; ----rrCATATGkT ; cor=; Ncor= a 0 0 0 0 520.0 201.0 4.0 520.0 2.0 520.0 8.0 0.0 4.0 21.0 c 0 0 0 0 21.0 123.0 520.0 0.0 2.0 0.0 24.0 0.0 99.0 172.0 g 0 0 0 0 254.0 193.0 2.0 48.0 4.0 2.0 6.0 520.0 229.0 26.0 t 0 0 0 0 36.0 4.0 0.0 11.0 520.0 0.0 520.0 6.0 189.0 520.0

MA0500.2_rc_shift3 (MYOG_rc)
; oligos_8nt_mkv5_m40 versus MA0500.2_rc (MYOG_rc); m=16/25; ncol2=12; w=11; offset=1; strand=R; shift=3; score=0.603744; ---sarCAGCTGyt ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0

MA0817.1_shift3 (BHLHE23)
; oligos_8nt_mkv5_m40 versus MA0817.1 (BHLHE23); m=17/25; ncol2=12; w=11; offset=1; strand=D; shift=3; score=0.602122; ---aAmCATATGkT ; cor=; Ncor= a 0 0 0 2550.0 5005.0 2779.0 21.0 5005.0 0.0 5005.0 47.0 0.0 13.0 243.0 c 0 0 0 686.0 55.0 1286.0 5005.0 0.0 4.0 5.0 115.0 4.0 1203.0 1468.0 g 0 0 0 858.0 890.0 932.0 0.0 67.0 1.0 3.0 5.0 5005.0 1771.0 92.0 t 0 0 0 912.0 44.0 8.0 0.0 17.0 5005.0 0.0 5005.0 7.0 2018.0 5005.0

MA0048.2_rc_shift4 (NHLH1_rc)
; oligos_8nt_mkv5_m40 versus MA0048.2_rc (NHLH1_rc); m=18/25; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.593497; ----mGCAGCTGCg ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0

MA1570.1_rc_shift4 (TFAP4(var.2)_rc)
; oligos_8nt_mkv5_m40 versus MA1570.1_rc (TFAP4(var.2)_rc); m=19/25; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.59271; ----amCAyrTGdt ; cor=; Ncor= a 0 0 0 0 479.0 206.0 0.0 479.0 0.0 479.0 0.0 0.0 129.0 39.0 c 0 0 0 0 110.0 156.0 479.0 0.0 287.0 161.0 14.0 0.0 0.0 197.0 g 0 0 0 0 210.0 14.0 3.0 0.0 149.0 220.0 0.0 479.0 144.0 130.0 t 0 0 0 0 60.0 103.0 0.0 0.0 479.0 0.0 479.0 0.0 217.0 479.0

MA0826.1_shift4 (OLIG1)
; oligos_8nt_mkv5_m40 versus MA0826.1 (OLIG1); m=20/25; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.591536; ----AmCATATGkT ; cor=; Ncor= a 0 0 0 0 11391.0 5931.0 52.0 11391.0 12.0 11391.0 195.0 0.0 12.0 490.0 c 0 0 0 0 240.0 4142.0 11391.0 1.0 15.0 80.0 175.0 0.0 2082.0 2812.0 g 0 0 0 0 1526.0 1321.0 0.0 139.0 113.0 17.0 0.0 11391.0 4568.0 257.0 t 0 0 0 0 205.0 0.0 0.0 80.0 11391.0 10.0 11391.0 74.0 4730.0 11391.0

MA0827.1_rc_shift4 (OLIG3_rc)
; oligos_8nt_mkv5_m40 versus MA0827.1_rc (OLIG3_rc); m=21/25; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.585512; ----rvCATATGkT ; cor=; Ncor= a 0 0 0 0 1915.0 1010.0 275.0 1915.0 0.0 1915.0 22.0 3.0 6.0 132.0 c 0 0 0 0 176.0 904.0 1915.0 2.0 11.0 72.0 99.0 0.0 208.0 427.0 g 0 0 0 0 964.0 662.0 4.0 224.0 103.0 26.0 10.0 1915.0 1115.0 204.0 t 0 0 0 0 265.0 28.0 4.0 56.0 1915.0 0.0 1915.0 222.0 800.0 1915.0

MA0091.1_rc_shift4 (TAL1::TCF3_rc)
; oligos_8nt_mkv5_m40 versus MA0091.1_rc (TAL1::TCF3_rc); m=22/25; ncol2=12; w=10; offset=2; strand=R; shift=4; score=0.571046; ----AmCAKMTGkT ; cor=; Ncor= a 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 c 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 g 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 t 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0

MA0521.1_shift4 (Tcf12)
; oligos_8nt_mkv5_m40 versus MA0521.1 (Tcf12); m=23/25; ncol2=11; w=10; offset=2; strand=D; shift=4; score=0.549899; ----rRCAGCTGsw ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0

MA1593.1_shift0 (ZNF317)
; oligos_8nt_mkv5_m40 versus MA1593.1 (ZNF317); m=24/25; ncol2=12; w=10; offset=-2; strand=D; shift=0; score=0.521807; wrACAGCAGAyw-- ; cor=; Ncor= a 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 0 c 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 0 g 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 0 t 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0 0

MA0607.1_rc_shift5 (Bhlha15_rc)
; oligos_8nt_mkv5_m40 versus MA0607.1_rc (Bhlha15_rc); m=25/25; ncol2=8; w=8; offset=3; strand=R; shift=5; score=0.515875; -----aCATATGs- ; cor=; Ncor= a 0 0 0 0 0 614.0 0.0 999.0 0.0 799.0 0.0 0.0 1.0 0 c 0 0 0 0 0 154.0 999.0 0.0 0.0 200.0 0.0 0.0 286.0 0 g 0 0 0 0 0 231.0 0.0 0.0 200.0 0.0 0.0 999.0 571.0 0 t 0 0 0 0 0 1.0 0.0 0.0 799.0 0.0 999.0 0.0 143.0 0

One-to-n matrix alignment; reference matrix: dyads_m38_shift1 ; 32 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m38_shift1 (dyads_m38dyads_m38)
; dyads_m38 (dyads_m38dyads_m38); m=0 (reference); ncol1=15; shift=1; ncol=19; -rsAACAGCTGTCAss--- ; Alignment reference a 0 89 63 267 258 1 338 4 3 0 0 16 4 261 44 76 0 0 0 c 0 80 117 31 18 338 1 6 321 0 2 35 303 35 129 106 0 0 0 g 0 113 111 32 59 0 0 329 9 0 337 9 20 15 104 95 0 0 0 t 0 57 48 9 4 0 0 0 6 339 0 279 12 28 62 62 0 0 0

MA0832.1_rc_shift1 (Tcf21_rc)
; dyads_m38 versus MA0832.1_rc (Tcf21_rc); m=1/31; ncol2=14; w=14; offset=0; strand=R; shift=1; score=0.798847; -ryAACAGCTGTTry---- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0

MA1485.1_shift1 (FERD3L)
; dyads_m38 versus MA1485.1 (FERD3L); m=2/31; ncol2=14; w=14; offset=0; strand=D; shift=1; score=0.769434; -GyrmCAGCTGTyAC---- ; cor=; Ncor= a 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 0 0 c 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 0 0 g 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 0 0 t 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0 0 0

MA1641.1_shift2 (MYF5)
; dyads_m38 versus MA1641.1 (MYF5); m=3/31; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.716928; --gvaCAGCTGtbc----- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0

MA1621.1_shift1 (Rbpjl)
; dyads_m38 versus MA1621.1 (Rbpjl); m=4/31; ncol2=14; w=14; offset=0; strand=D; shift=1; score=0.706018; -svmaCACCTGtsyc---- ; cor=; Ncor= a 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 0 c 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 0 g 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 0 t 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; dyads_m38 versus MA1619.1 (Ptf1a(var.2)); m=5/31; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.701292; --rmaCAGCTGtky----- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0

MA0499.2_shift2 (MYOD1)
; dyads_m38 versus MA0499.2 (MYOD1); m=6/31; ncol2=13; w=13; offset=1; strand=D; shift=2; score=0.671798; --cwgCACCTGTymy---- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0 0

MA1618.1_rc_shift1 (Ptf1a_rc)
; dyads_m38 versus MA1618.1_rc (Ptf1a_rc); m=7/31; ncol2=13; w=13; offset=0; strand=R; shift=1; score=0.671389; -dmaaCATCTGtkh----- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0 0 0

MA0500.2_rc_shift2 (MYOG_rc)
; dyads_m38 versus MA0500.2_rc (MYOG_rc); m=8/31; ncol2=12; w=12; offset=1; strand=R; shift=2; score=0.668897; --sarCAGCTGyts----- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0

MA0796.1_rc_shift2 (TGIF1_rc)
; dyads_m38 versus MA0796.1_rc (TGIF1_rc); m=9/31; ncol2=12; w=12; offset=1; strand=R; shift=2; score=0.660531; --TGACAGCTGTCA----- ; cor=; Ncor= a 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 0 0 c 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 0 0 g 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 0 0 t 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0 0 0

MA1467.1_shift3 (ATOH1(var.2))
; dyads_m38 versus MA1467.1 (ATOH1(var.2)); m=10/31; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.654452; ---AACAGCTGTY------ ; cor=; Ncor= a 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0 c 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0 g 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0 t 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0

MA1571.1_rc_shift2 (TGIF2LX_rc)
; dyads_m38 versus MA1571.1_rc (TGIF2LX_rc); m=11/31; ncol2=12; w=12; offset=1; strand=R; shift=2; score=0.650654; --TGACAgcTGTCA----- ; cor=; Ncor= a 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 0 0 0 c 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 0 0 0 g 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 0 0 0 t 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0 0 0 0

MA0797.1_rc_shift2 (TGIF2_rc)
; dyads_m38 versus MA0797.1_rc (TGIF2_rc); m=12/31; ncol2=12; w=12; offset=1; strand=R; shift=2; score=0.644547; --TGACAsCTGTCA----- ; cor=; Ncor= a 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 0 0 c 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 0 0 g 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 0 0 t 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0 0 0

MA0521.1_rc_shift2 (Tcf12_rc)
; dyads_m38 versus MA0521.1_rc (Tcf12_rc); m=13/31; ncol2=11; w=11; offset=1; strand=R; shift=2; score=0.639357; --cwsCAGCTGYy------ ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0

MA1572.1_shift2 (TGIF2LY)
; dyads_m38 versus MA1572.1 (TGIF2LY); m=14/31; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.63773; --TGACAgcTGTCA----- ; cor=; Ncor= a 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 0 0 c 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 0 0 g 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 0 0 t 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0 0 0

MA0783.1_shift2 (PKNOX2)
; dyads_m38 versus MA0783.1 (PKNOX2); m=15/31; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.616893; --TGACAGsTGTCA----- ; cor=; Ncor= a 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 0 0 0 0 c 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 0 0 0 0 g 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 0 0 0 0 t 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0 0 0 0 0

MA0665.1_rc_shift3 (MSC_rc)
; dyads_m38 versus MA0665.1_rc (MSC_rc); m=16/31; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.606915; ---AACAGCTGTT------ ; cor=; Ncor= a 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 0 0 c 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 0 0 g 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 0 0 t 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0 0 0

MA1620.1_rc_shift2 (Ptf1a(var.3)_rc)
; dyads_m38 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=17/31; ncol2=12; w=12; offset=1; strand=R; shift=2; score=0.604029; --rmaCAGGTGtky----- ; cor=; Ncor= a 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 0 0 0 c 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 0 0 0 g 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 0 0 0 t 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0 0 0 0

MA1472.1_shift3 (BHLHA15(var.2))
; dyads_m38 versus MA1472.1 (BHLHA15(var.2)); m=18/31; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.597786; ---avCAGCTGyy------ ; cor=; Ncor= a 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 0 c 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 0 g 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 0 t 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0 0

MA0667.1_shift3 (MYF6)
; dyads_m38 versus MA0667.1 (MYF6); m=19/31; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.593529; ---AACArCTGTY------ ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 0 0 c 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 0 0 g 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 0 0 t 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0 0 0

MA0091.1_shift1 (TAL1::TCF3)
; dyads_m38 versus MA0091.1 (TAL1::TCF3); m=20/31; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.578722; -mgAmCAKMTGkT------ ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0 0 0

MA0691.1_shift3 (TFAP4)
; dyads_m38 versus MA0691.1 (TFAP4); m=21/31; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.577162; ---AwCAGCTGwT------ ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0 0 0

MA0816.1_shift3 (Ascl2)
; dyads_m38 versus MA0816.1 (Ascl2); m=22/31; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.576864; ---arCAGCTGyy------ ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0

MA1635.1_rc_shift3 (BHLHE22(var.2)_rc)
; dyads_m38 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=23/31; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.554281; ---csCAGCTGsg------ ; cor=; Ncor= a 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0 c 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0 g 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0 t 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0

MA1100.2_shift3 (ASCL1)
; dyads_m38 versus MA1100.2 (ASCL1); m=24/31; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.546575; ---rrCAGCTGcy------ ; cor=; Ncor= a 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 0 0 c 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 0 0 g 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 0 0 t 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0 0 0

MA0820.1_shift3 (FIGLA)
; dyads_m38 versus MA0820.1 (FIGLA); m=25/31; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.508666; ---wmCACCTGkw------ ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0 0

MA1655.1_shift0 (ZNF341)
; dyads_m38 versus MA1655.1 (ZNF341); m=26/31; ncol2=12; w=11; offset=-1; strand=D; shift=0; score=0.496863; grGAACAGCcas------- ; cor=; Ncor= a 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 0 0 0 0 0 c 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 0 0 0 0 0 g 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 0 0 0 0 0 t 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0 0 0 0 0 0

MA0048.2_shift3 (NHLH1)
; dyads_m38 versus MA0048.2 (NHLH1); m=27/31; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.48615; ---cGCAGCTGCk------ ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0 0

MA0774.1_rc_shift7 (MEIS2_rc)
; dyads_m38 versus MA0774.1_rc (MEIS2_rc); m=28/31; ncol2=8; w=8; offset=6; strand=R; shift=7; score=0.480431; -------sCTGTCAa---- ; cor=; Ncor= a 0 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 0 0 0 c 0 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 0 0 0 g 0 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 0 0 0 t 0 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0 0 0 0

MA0775.1_rc_shift7 (MEIS3_rc)
; dyads_m38 versus MA0775.1_rc (MEIS3_rc); m=29/31; ncol2=8; w=8; offset=6; strand=R; shift=7; score=0.459766; -------scTGTCAw---- ; cor=; Ncor= a 0 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 0 0 0 c 0 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 0 0 0 g 0 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 0 0 0 t 0 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0 0 0 0

MA0498.2_rc_shift8 (MEIS1_rc)
; dyads_m38 versus MA0498.2_rc (MEIS1_rc); m=30/31; ncol2=7; w=7; offset=7; strand=R; shift=8; score=0.423904; --------cTGTCAw---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 15106.0 3861.0 1155.0 0.0 0.0 77159.0 24921.0 0 0 0 0 c 0 0 0 0 0 0 0 0 29965.0 9263.0 0.0 672.0 77159.0 3174.0 9714.0 0 0 0 0 g 0 0 0 0 0 0 0 0 14864.0 0.0 77159.0 2903.0 1249.0 5575.0 18797.0 0 0 0 0 t 0 0 0 0 0 0 0 0 17224.0 77159.0 0.0 77159.0 0.0 8690.0 23727.0 0 0 0 0

MA0782.2_rc_shift5 (PKNOX1_rc)
; dyads_m38 versus MA0782.2_rc (PKNOX1_rc); m=31/31; ncol2=15; w=11; offset=4; strand=R; shift=5; score=0.419608; -----yagCTGTCAcTCAw ; cor=; Ncor= a 0 0 0 0 0 9877.0 12900.0 6042.0 5092.0 2629.0 886.0 720.0 691.0 36918.0 7333.0 1196.0 1043.0 29794.0 10355.0 c 0 0 0 0 0 10296.0 9060.0 9128.0 27367.0 2408.0 580.0 2459.0 37713.0 1027.0 26182.0 1330.0 36106.0 3322.0 9535.0 g 0 0 0 0 0 9268.0 9386.0 16341.0 4759.0 944.0 37846.0 410.0 1004.0 878.0 4123.0 678.0 1160.0 1625.0 9828.0 t 0 0 0 0 0 10522.0 8617.0 8452.0 2745.0 33982.0 651.0 36374.0 555.0 1140.0 2325.0 36759.0 1654.0 5222.0 10245.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m41_shift1 ; 22 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m41_shift1 (oligos_7nt_mkv4_m41oligos_7nt_mkv4_m41)
; oligos_7nt_mkv4_m41 (oligos_7nt_mkv4_m41oligos_7nt_mkv4_m41); m=0 (reference); ncol1=11; shift=1; ncol=15; -scCACCAGCtg--- ; Alignment reference a 0 80 84 0 379 0 0 374 0 0 87 35 0 0 0 c 0 107 124 380 0 380 376 3 0 380 72 65 0 0 0 g 0 131 88 0 1 0 4 3 379 0 23 240 0 0 0 t 0 62 84 0 0 0 0 0 1 0 198 40 0 0 0

MA1648.1_shift1 (TCF12(var.2))
; oligos_7nt_mkv4_m41 versus MA1648.1 (TCF12(var.2)); m=1/21; ncol2=11; w=11; offset=0; strand=D; shift=1; score=0.796375; -ssCACCTGCys--- ; cor=; Ncor= a 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift1 (TCF3)
; oligos_7nt_mkv4_m41 versus MA0522.3 (TCF3); m=2/21; ncol2=11; w=11; offset=0; strand=D; shift=1; score=0.791435; -svCACCTGCss--- ; cor=; Ncor= a 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0103.3_shift1 (ZEB1)
; oligos_7nt_mkv4_m41 versus MA0103.3 (ZEB1); m=3/21; ncol2=11; w=11; offset=0; strand=D; shift=1; score=0.73276; -ssCACCTGsss--- ; cor=; Ncor= a 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 c 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 g 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 t 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0

MA1558.1_rc_shift1 (SNAI1_rc)
; oligos_7nt_mkv4_m41 versus MA1558.1_rc (SNAI1_rc); m=4/21; ncol2=10; w=10; offset=0; strand=R; shift=1; score=0.684234; -yrCACCTGyh---- ; cor=; Ncor= a 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0

MA1631.1_shift0 (ASCL1(var.2))
; oligos_7nt_mkv4_m41 versus MA1631.1 (ASCL1(var.2)); m=5/21; ncol2=13; w=11; offset=-1; strand=D; shift=0; score=0.64455; cdgCACCTGCysc-- ; cor=; Ncor= a 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0830.2_shift0 (TCF4)
; oligos_7nt_mkv4_m41 versus MA0830.2 (TCF4); m=6/21; ncol2=13; w=11; offset=-1; strand=D; shift=0; score=0.627902; cggCACCTGccss-- ; cor=; Ncor= a 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA0091.1_shift2 (TAL1::TCF3)
; oligos_7nt_mkv4_m41 versus MA0091.1 (TAL1::TCF3); m=7/21; ncol2=12; w=10; offset=1; strand=D; shift=2; score=0.539627; --mgAmCAKMTGkT- ; cor=; Ncor= a 0 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 c 0 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 g 0 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 t 0 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; oligos_7nt_mkv4_m41 versus MA0521.1_rc (Tcf12_rc); m=8/21; ncol2=11; w=9; offset=2; strand=R; shift=3; score=0.520947; ---cwsCAGCTGYy- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; oligos_7nt_mkv4_m41 versus MA0832.1_rc (Tcf21_rc); m=9/21; ncol2=14; w=10; offset=1; strand=R; shift=2; score=0.513294; --ryAACAGCTGTTr ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0

MA0691.1_shift4 (TFAP4)
; oligos_7nt_mkv4_m41 versus MA0691.1 (TFAP4); m=10/21; ncol2=10; w=8; offset=3; strand=D; shift=4; score=0.506087; ----AwCAGCTGwT- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0

MA1485.1_shift2 (FERD3L)
; oligos_7nt_mkv4_m41 versus MA1485.1 (FERD3L); m=11/21; ncol2=14; w=10; offset=1; strand=D; shift=2; score=0.502595; --GyrmCAGCTGTyA ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0

MA0816.1_shift4 (Ascl2)
; oligos_7nt_mkv4_m41 versus MA0816.1 (Ascl2); m=12/21; ncol2=10; w=8; offset=3; strand=D; shift=4; score=0.493682; ----arCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0

MA0665.1_shift4 (MSC)
; oligos_7nt_mkv4_m41 versus MA0665.1 (MSC); m=13/21; ncol2=10; w=8; offset=3; strand=D; shift=4; score=0.483599; ----AACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0

MA1472.1_shift4 (BHLHA15(var.2))
; oligos_7nt_mkv4_m41 versus MA1472.1 (BHLHA15(var.2)); m=14/21; ncol2=10; w=8; offset=3; strand=D; shift=4; score=0.481772; ----avCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0

MA1467.1_shift4 (ATOH1(var.2))
; oligos_7nt_mkv4_m41 versus MA1467.1 (ATOH1(var.2)); m=15/21; ncol2=10; w=8; offset=3; strand=D; shift=4; score=0.480454; ----AACAGCTGTY- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0

MA1635.1_shift4 (BHLHE22(var.2))
; oligos_7nt_mkv4_m41 versus MA1635.1 (BHLHE22(var.2)); m=16/21; ncol2=10; w=8; offset=3; strand=D; shift=4; score=0.478156; ----csCAGCTGsg- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0

MA0500.2_shift3 (MYOG)
; oligos_7nt_mkv4_m41 versus MA0500.2 (MYOG); m=17/21; ncol2=12; w=9; offset=2; strand=D; shift=3; score=0.465933; ---sarCAGCTGyts ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0

MA0667.1_shift4 (MYF6)
; oligos_7nt_mkv4_m41 versus MA0667.1 (MYF6); m=18/21; ncol2=10; w=8; offset=3; strand=D; shift=4; score=0.438469; ----AACArCTGTY- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0

MA0820.1_shift4 (FIGLA)
; oligos_7nt_mkv4_m41 versus MA0820.1 (FIGLA); m=19/21; ncol2=10; w=8; offset=3; strand=D; shift=4; score=0.435887; ----wmCACCTGkw- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0

MA0807.1_rc_shift0 (TBX5_rc)
; oligos_7nt_mkv4_m41 versus MA0807.1_rc (TBX5_rc); m=20/21; ncol2=8; w=7; offset=-1; strand=R; shift=0; score=0.417034; TmACACCT------- ; cor=; Ncor= a 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 0 c 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 0 g 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 0 t 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0 0

MA1628.1_shift4 (Zic1::Zic2)
; oligos_7nt_mkv4_m41 versus MA1628.1 (Zic1::Zic2); m=21/21; ncol2=11; w=8; offset=3; strand=D; shift=4; score=0.406579; ----cvCAGCAGGsr ; cor=; Ncor= a 0 0 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 c 0 0 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 g 0 0 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 t 0 0 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0

One-to-n matrix alignment; reference matrix: positions_8nt_m5_shift1 ; 23 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_8nt_m5_shift1 (positions_8nt_m5positions_8nt_m5)
; positions_8nt_m5 (positions_8nt_m5positions_8nt_m5); m=0 (reference); ncol1=15; shift=1; ncol=16; -gsAACAGCTGCTGcb ; Alignment reference a 0 156 121 459 500 0 632 3 1 41 1 13 69 23 112 102 c 0 152 219 75 23 633 0 8 624 3 1 589 11 46 232 170 g 0 229 209 81 101 0 0 623 8 0 633 14 12 546 149 203 t 0 98 86 20 11 2 3 1 2 591 0 19 543 20 142 160

MA0832.1_shift1 (Tcf21)
; positions_8nt_m5 versus MA0832.1 (Tcf21); m=1/22; ncol2=14; w=14; offset=0; strand=D; shift=1; score=0.79543; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; positions_8nt_m5 versus MA1485.1_rc (FERD3L_rc); m=2/22; ncol2=14; w=14; offset=0; strand=R; shift=1; score=0.719367; -GTrACAGCTGkyrC- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0

MA0500.2_rc_shift2 (MYOG_rc)
; positions_8nt_m5 versus MA0500.2_rc (MYOG_rc); m=3/22; ncol2=12; w=12; offset=1; strand=R; shift=2; score=0.699405; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA0499.2_rc_shift1 (MYOD1_rc)
; positions_8nt_m5 versus MA0499.2_rc (MYOD1_rc); m=4/22; ncol2=13; w=13; offset=0; strand=R; shift=1; score=0.683034; -rkrACAGGTGcwg-- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0

MA0521.1_shift3 (Tcf12)
; positions_8nt_m5 versus MA0521.1 (Tcf12); m=5/22; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.656615; ---rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA1641.1_shift2 (MYF5)
; positions_8nt_m5 versus MA1641.1 (MYF5); m=6/22; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.651687; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; positions_8nt_m5 versus MA1619.1 (Ptf1a(var.2)); m=7/22; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.64943; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA0816.1_shift3 (Ascl2)
; positions_8nt_m5 versus MA0816.1 (Ascl2); m=8/22; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.631176; ---arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA1618.1_shift2 (Ptf1a)
; positions_8nt_m5 versus MA1618.1 (Ptf1a); m=9/22; ncol2=13; w=13; offset=1; strand=D; shift=2; score=0.610936; --dmaCAGATGttkh- ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0

MA0091.1_shift1 (TAL1::TCF3)
; positions_8nt_m5 versus MA0091.1 (TAL1::TCF3); m=10/22; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.597823; -mgAmCAKMTGkT--- ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; positions_8nt_m5 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/22; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.589794; ---rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0

MA0665.1_shift3 (MSC)
; positions_8nt_m5 versus MA0665.1 (MSC); m=12/22; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.588473; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0

MA0691.1_shift3 (TFAP4)
; positions_8nt_m5 versus MA0691.1 (TFAP4); m=13/22; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.586185; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; positions_8nt_m5 versus MA1100.2_rc (ASCL1_rc); m=14/22; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.571008; ---rgCAGCTGyy--- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; positions_8nt_m5 versus MA1635.1 (BHLHE22(var.2)); m=15/22; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.563504; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0

MA1467.1_shift3 (ATOH1(var.2))
; positions_8nt_m5 versus MA1467.1 (ATOH1(var.2)); m=16/22; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.562135; ---AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA0048.2_shift3 (NHLH1)
; positions_8nt_m5 versus MA0048.2 (NHLH1); m=17/22; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.556769; ---cGCAGCTGCk--- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; positions_8nt_m5 versus MA0667.1_rc (MYF6_rc); m=18/22; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.551636; ---RACAGyTGTT--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0

MA1648.1_shift3 (TCF12(var.2))
; positions_8nt_m5 versus MA1648.1 (TCF12(var.2)); m=19/22; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.517614; ---ssCACCTGCys-- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0

MA1655.1_shift0 (ZNF341)
; positions_8nt_m5 versus MA1655.1 (ZNF341); m=20/22; ncol2=12; w=11; offset=-1; strand=D; shift=0; score=0.509374; grGAACAGCcas---- ; cor=; Ncor= a 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 0 0 c 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 0 0 g 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 0 0 t 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; positions_8nt_m5 versus MA0820.1_rc (FIGLA_rc); m=21/22; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.50004; ---wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0

MA1559.1_shift3 (SNAI3)
; positions_8nt_m5 versus MA1559.1 (SNAI3); m=22/22; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.473504; ---arCAGGTGya--- ; cor=; Ncor= a 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 c 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 g 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 t 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m33_shift3 ; 37 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m33_shift3 (oligos_8nt_mkv5_m33oligos_8nt_mkv5_m33)
; oligos_8nt_mkv5_m33 (oligos_8nt_mkv5_m33oligos_8nt_mkv5_m33); m=0 (reference); ncol1=13; shift=3; ncol=16; ---ssCACCTGCTsys ; Alignment reference a 0 0 0 91 92 1 383 1 0 1 0 1 0 40 53 58 c 0 0 0 98 114 384 0 381 378 4 2 371 21 104 159 117 g 0 0 0 106 138 1 4 2 9 7 382 0 2 197 52 121 t 0 0 0 92 43 1 0 3 0 375 3 15 364 46 123 91

MA1648.1_shift3 (TCF12(var.2))
; oligos_8nt_mkv5_m33 versus MA1648.1 (TCF12(var.2)); m=1/36; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.794316; ---ssCACCTGCys-- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0

MA0522.3_shift3 (TCF3)
; oligos_8nt_mkv5_m33 versus MA0522.3 (TCF3); m=2/36; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.78849; ---svCACCTGCss-- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0

MA1631.1_shift2 (ASCL1(var.2))
; oligos_8nt_mkv5_m33 versus MA1631.1 (ASCL1(var.2)); m=3/36; ncol2=13; w=12; offset=-1; strand=D; shift=2; score=0.78767; --cdgCACCTGCysc- ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0

MA0830.2_shift2 (TCF4)
; oligos_8nt_mkv5_m33 versus MA0830.2 (TCF4); m=4/36; ncol2=13; w=12; offset=-1; strand=D; shift=2; score=0.770786; --cggCACCTGccss- ; cor=; Ncor= a 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 c 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 g 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 t 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0

MA0103.3_shift3 (ZEB1)
; oligos_8nt_mkv5_m33 versus MA0103.3 (ZEB1); m=5/36; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.746574; ---ssCACCTGsss-- ; cor=; Ncor= a 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 c 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 g 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 t 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0

MA1628.1_rc_shift5 (Zic1::Zic2_rc)
; oligos_8nt_mkv5_m33 versus MA1628.1_rc (Zic1::Zic2_rc); m=6/36; ncol2=11; w=11; offset=2; strand=R; shift=5; score=0.710844; -----ysCCTGCTGbg ; cor=; Ncor= a 0 0 0 0 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 c 0 0 0 0 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 g 0 0 0 0 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 t 0 0 0 0 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0

MA1558.1_rc_shift3 (SNAI1_rc)
; oligos_8nt_mkv5_m33 versus MA1558.1_rc (SNAI1_rc); m=7/36; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.702301; ---yrCACCTGyh--- ; cor=; Ncor= a 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 c 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 g 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 t 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0

MA1559.1_rc_shift3 (SNAI3_rc)
; oligos_8nt_mkv5_m33 versus MA1559.1_rc (SNAI3_rc); m=8/36; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.679943; ---trCACCTGyt--- ; cor=; Ncor= a 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 c 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 g 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 t 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0

MA0745.2_shift2 (SNAI2)
; oligos_8nt_mkv5_m33 versus MA0745.2 (SNAI2); m=9/36; ncol2=13; w=12; offset=-1; strand=D; shift=2; score=0.678713; --aygCACCTGTmry- ; cor=; Ncor= a 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA0499.2_shift2 (MYOD1)
; oligos_8nt_mkv5_m33 versus MA0499.2 (MYOD1); m=10/36; ncol2=13; w=12; offset=-1; strand=D; shift=2; score=0.648209; --cwgCACCTGTymy- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0820.1_shift3 (FIGLA)
; oligos_8nt_mkv5_m33 versus MA0820.1 (FIGLA); m=11/36; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.642839; ---wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

MA1621.1_shift1 (Rbpjl)
; oligos_8nt_mkv5_m33 versus MA1621.1 (Rbpjl); m=12/36; ncol2=14; w=12; offset=-2; strand=D; shift=1; score=0.642717; -svmaCACCTGtsyc- ; cor=; Ncor= a 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0

MA1629.1_rc_shift4 (Zic2_rc)
; oligos_8nt_mkv5_m33 versus MA1629.1_rc (Zic2_rc); m=13/36; ncol2=14; w=12; offset=1; strand=R; shift=4; score=0.637836; ----cyyCCTGCTGtG ; cor=; Ncor= a 0 0 0 0 2104.0 1641.0 2472.0 154.0 410.0 441.0 298.0 67.0 268.0 120.0 2437.0 240.0 c 0 0 0 0 5314.0 4979.0 4911.0 11465.0 11184.0 735.0 269.0 11484.0 186.0 188.0 829.0 585.0 g 0 0 0 0 2168.0 1661.0 1476.0 204.0 133.0 118.0 11272.0 228.0 391.0 11476.0 1765.0 9933.0 t 0 0 0 0 2333.0 3638.0 3060.0 96.0 192.0 10625.0 80.0 140.0 11074.0 135.0 6888.0 1161.0

MA0744.2_rc_shift2 (SCRT2_rc)
; oligos_8nt_mkv5_m33 versus MA0744.2_rc (SCRT2_rc); m=14/36; ncol2=16; w=13; offset=-1; strand=R; shift=2; score=0.628832; --waccACCTGTTGmw ; cor=; Ncor= a 0 0 21453.0 18751.0 15588.0 11335.0 58889.0 2140.0 1471.0 1184.0 204.0 953.0 4384.0 3732.0 17252.0 16873.0 c 0 0 12430.0 14716.0 25288.0 38133.0 1168.0 60636.0 56105.0 252.0 319.0 1878.0 2265.0 1339.0 35769.0 12473.0 g 0 0 13846.0 16085.0 11351.0 5661.0 3475.0 972.0 728.0 294.0 64856.0 413.0 5536.0 59161.0 7236.0 6319.0 t 0 0 17881.0 16058.0 13383.0 10481.0 2078.0 1862.0 7306.0 63880.0 231.0 62366.0 53425.0 1378.0 5353.0 29945.0

MA1620.1_shift2 (Ptf1a(var.3))
; oligos_8nt_mkv5_m33 versus MA1620.1 (Ptf1a(var.3)); m=15/36; ncol2=12; w=11; offset=-1; strand=D; shift=2; score=0.627723; --rmaCACCTGtky-- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0

MA0743.2_rc_shift2 (SCRT1_rc)
; oligos_8nt_mkv5_m33 versus MA0743.2_rc (SCRT1_rc); m=16/36; ncol2=16; w=13; offset=-1; strand=R; shift=2; score=0.624262; --wacCACCTGTTGmw ; cor=; Ncor= a 0 0 19839.0 18454.0 13726.0 7910.0 57969.0 1579.0 1305.0 1058.0 215.0 1002.0 4017.0 2621.0 31975.0 24326.0 c 0 0 11049.0 13470.0 26973.0 41190.0 259.0 56500.0 51330.0 159.0 224.0 1566.0 1835.0 1297.0 16396.0 10154.0 g 0 0 12837.0 14903.0 8788.0 3296.0 1098.0 466.0 557.0 234.0 59557.0 370.0 8751.0 54835.0 7425.0 8693.0 t 0 0 16484.0 13382.0 10722.0 7813.0 883.0 1664.0 7017.0 58758.0 213.0 57271.0 45606.0 1456.0 4413.0 17036.0

MA1100.2_rc_shift3 (ASCL1_rc)
; oligos_8nt_mkv5_m33 versus MA1100.2_rc (ASCL1_rc); m=17/36; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.61199; ---rgCAGCTGyy--- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0

MA0816.1_shift3 (Ascl2)
; oligos_8nt_mkv5_m33 versus MA0816.1 (Ascl2); m=18/36; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.601409; ---arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA0048.2_shift3 (NHLH1)
; oligos_8nt_mkv5_m33 versus MA0048.2 (NHLH1); m=19/36; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.58255; ---cGCAGCTGCk--- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0

MA0500.2_shift2 (MYOG)
; oligos_8nt_mkv5_m33 versus MA0500.2 (MYOG); m=20/36; ncol2=12; w=11; offset=-1; strand=D; shift=2; score=0.573916; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA0147.3_shift2 (MYC)
; oligos_8nt_mkv5_m33 versus MA0147.3 (MYC); m=21/36; ncol2=12; w=11; offset=-1; strand=D; shift=2; score=0.565452; --ssCCACGTGcys-- ; cor=; Ncor= a 0 0 1038.0 1019.0 438.0 44.0 4600.0 54.0 169.0 59.0 23.0 419.0 961.0 755.0 0 0 c 0 0 1345.0 1287.0 3746.0 4840.0 59.0 4525.0 157.0 162.0 56.0 2801.0 1524.0 1785.0 0 0 g 0 0 1649.0 1757.0 472.0 31.0 170.0 70.0 4578.0 63.0 4817.0 1198.0 1036.0 1348.0 0 0 t 0 0 910.0 879.0 286.0 27.0 113.0 293.0 38.0 4658.0 46.0 524.0 1421.0 1054.0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; oligos_8nt_mkv5_m33 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=22/36; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.557127; ---rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0

MA0058.3_shift3 (MAX)
; oligos_8nt_mkv5_m33 versus MA0058.3 (MAX); m=23/36; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.555068; ---amCACGTGcy--- ; cor=; Ncor= a 0 0 0 3307.0 1915.0 39.0 6876.0 0.0 329.0 69.0 0.0 1341.0 1122.0 0 0 0 c 0 0 0 1556.0 2809.0 6876.0 0.0 6876.0 39.0 159.0 27.0 2450.0 2225.0 0 0 0 g 0 0 0 1295.0 1514.0 0.0 87.0 7.0 6876.0 20.0 6876.0 1638.0 986.0 0 0 0 t 0 0 0 719.0 637.0 0.0 38.0 229.0 19.0 6876.0 36.0 1446.0 2543.0 0 0 0

MA0825.1_shift3 (MNT)
; oligos_8nt_mkv5_m33 versus MA0825.1 (MNT); m=24/36; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.55348; ---avCACGTGcy--- ; cor=; Ncor= a 0 0 0 279.0 187.0 27.0 681.0 0.0 15.0 0.0 0.0 150.0 159.0 0 0 0 c 0 0 0 128.0 228.0 681.0 0.0 681.0 0.0 0.0 0.0 281.0 229.0 0 0 0 g 0 0 0 145.0 203.0 0.0 0.0 7.0 681.0 15.0 681.0 131.0 75.0 0 0 0 t 0 0 0 129.0 63.0 5.0 21.0 16.0 0.0 681.0 25.0 120.0 219.0 0 0 0

MA1560.1_shift3 (SOHLH2)
; oligos_8nt_mkv5_m33 versus MA1560.1 (SOHLH2); m=25/36; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.548558; ---ygCACGTGcr--- ; cor=; Ncor= a 0 0 0 230.0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 381.0 0 0 0 c 0 0 0 485.0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 239.0 0 0 0 g 0 0 0 184.0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 369.0 0 0 0 t 0 0 0 313.0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0 224.0 0 0 0

MA1585.1_rc_shift5 (ZKSCAN1_rc)
; oligos_8nt_mkv5_m33 versus MA1585.1_rc (ZKSCAN1_rc); m=26/36; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.546772; -----caCCTACTrT- ; cor=; Ncor= a 0 0 0 0 0 494.0 3469.0 27.0 34.0 0.0 6127.0 12.0 0.0 3308.0 454.0 0 c 0 0 0 0 0 2880.0 750.0 6075.0 5980.0 0.0 0.0 6092.0 20.0 364.0 584.0 0 g 0 0 0 0 0 1480.0 1303.0 12.0 101.0 48.0 0.0 5.0 53.0 2268.0 456.0 0 t 0 0 0 0 0 1273.0 605.0 13.0 12.0 6079.0 0.0 18.0 6054.0 187.0 4633.0 0

MA0626.1_rc_shift3 (Npas2_rc)
; oligos_8nt_mkv5_m33 versus MA0626.1_rc (Npas2_rc); m=27/36; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.542678; ---kaCACGTGsh--- ; cor=; Ncor= a 0 0 0 202.0 566.0 0.0 999.0 0.0 0.0 0.0 0.0 48.0 257.0 0 0 0 c 0 0 0 202.0 188.0 918.0 0.0 918.0 0.0 0.0 0.0 420.0 293.0 0 0 0 g 0 0 0 299.0 172.0 0.0 0.0 0.0 918.0 0.0 999.0 377.0 177.0 0 0 0 t 0 0 0 297.0 74.0 81.0 0.0 81.0 81.0 999.0 0.0 154.0 273.0 0 0 0

MA0521.1_rc_shift2 (Tcf12_rc)
; oligos_8nt_mkv5_m33 versus MA0521.1_rc (Tcf12_rc); m=28/36; ncol2=11; w=10; offset=-1; strand=R; shift=2; score=0.536259; --cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA0622.1_rc_shift4 (Mlxip_rc)
; oligos_8nt_mkv5_m33 versus MA0622.1_rc (Mlxip_rc); m=29/36; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.456701; ----mCACGTGv---- ; cor=; Ncor= a 0 0 0 0 499.0 0.0 999.0 0.0 0.0 0.0 0.0 263.0 0 0 0 0 c 0 0 0 0 250.0 999.0 0.0 999.0 0.0 0.0 0.0 421.0 0 0 0 0 g 0 0 0 0 63.0 0.0 0.0 0.0 999.0 0.0 999.0 263.0 0 0 0 0 t 0 0 0 0 188.0 0.0 0.0 0.0 0.0 999.0 0.0 53.0 0 0 0 0

MA0807.1_rc_shift2 (TBX5_rc)
; oligos_8nt_mkv5_m33 versus MA0807.1_rc (TBX5_rc); m=30/36; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.449762; --TmACACCT------ ; cor=; Ncor= a 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 c 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 g 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 t 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0

MA0806.1_rc_shift2 (TBX4_rc)
; oligos_8nt_mkv5_m33 versus MA0806.1_rc (TBX4_rc); m=31/36; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.449057; --TcACACCT------ ; cor=; Ncor= a 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 0 0 c 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 0 0 g 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 0 0 t 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0 0 0

MA0803.1_rc_shift2 (TBX15_rc)
; oligos_8nt_mkv5_m33 versus MA0803.1_rc (TBX15_rc); m=32/36; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.429997; --TCACACCT------ ; cor=; Ncor= a 0 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 0 0 0 0 0 c 0 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 0 0 0 0 0 g 0 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 0 0 0 0 0 t 0 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0 0 0 0 0 0

MA0805.1_rc_shift2 (TBX1_rc)
; oligos_8nt_mkv5_m33 versus MA0805.1_rc (TBX1_rc); m=33/36; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.423313; --TCACACCT------ ; cor=; Ncor= a 0 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 0 0 0 c 0 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 0 0 0 g 0 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 0 0 0 t 0 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0 0 0 0

MA0801.1_rc_shift2 (MGA_rc)
; oligos_8nt_mkv5_m33 versus MA0801.1_rc (MGA_rc); m=34/36; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.419388; --TCACACCT------ ; cor=; Ncor= a 0 0 274.0 6465.0 30489.0 11.0 30489.0 104.0 1929.0 4160.0 0 0 0 0 0 0 c 0 0 920.0 30489.0 381.0 30489.0 96.0 30489.0 30489.0 8873.0 0 0 0 0 0 0 g 0 0 110.0 1753.0 3089.0 1.0 3534.0 509.0 3737.0 1151.0 0 0 0 0 0 0 t 0 0 30489.0 689.0 1042.0 14.0 12.0 16.0 4310.0 30489.0 0 0 0 0 0 0

MA1567.1_rc_shift1 (TBX6_rc)
; oligos_8nt_mkv5_m33 versus MA1567.1_rc (TBX6_rc); m=35/36; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.415674; -tTmACACcty----- ; cor=; Ncor= a 0 2330.0 713.0 5964.0 11087.0 12.0 11087.0 0.0 1058.0 2157.0 2456.0 0 0 0 0 0 c 0 2141.0 2251.0 11087.0 320.0 11087.0 0.0 11087.0 11087.0 3347.0 4003.0 0 0 0 0 0 g 0 2066.0 652.0 4876.0 3053.0 0.0 1002.0 63.0 2913.0 1173.0 1630.0 0 0 0 0 0 t 0 4550.0 11087.0 1430.0 552.0 14.0 44.0 58.0 1882.0 11087.0 2998.0 0 0 0 0 0

MA1565.1_rc_shift0 (TBX18_rc)
; oligos_8nt_mkv5_m33 versus MA1565.1_rc (TBX18_rc); m=36/36; ncol2=12; w=9; offset=-3; strand=R; shift=0; score=0.415398; ytTCACACCTyy---- ; cor=; Ncor= a 90.0 95.0 34.0 32.0 778.0 2.0 778.0 0.0 47.0 59.0 148.0 160.0 0 0 0 0 c 246.0 265.0 5.0 778.0 109.0 778.0 0.0 778.0 778.0 159.0 435.0 316.0 0 0 0 0 g 137.0 62.0 1.0 161.0 98.0 6.0 80.0 0.0 57.0 62.0 103.0 86.0 0 0 0 0 t 305.0 778.0 778.0 52.0 100.0 21.0 7.0 14.0 73.0 778.0 343.0 216.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m8_shift2 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m8_shift2 (oligos_8nt_mkv5_m8oligos_8nt_mkv5_m8)
; oligos_8nt_mkv5_m8 (oligos_8nt_mkv5_m8oligos_8nt_mkv5_m8); m=0 (reference); ncol1=13; shift=2; ncol=15; --ssGCGCAGGCGss ; Alignment reference a 0 0 28 32 14 10 3 2 150 5 2 5 4 16 30 c 0 0 70 63 13 171 7 187 13 14 11 184 5 87 67 g 0 0 80 62 163 12 183 4 21 161 181 4 182 67 80 t 0 0 17 38 5 2 2 2 11 15 1 2 4 25 18

MA0506.1_rc_shift3 (NRF1_rc)
; oligos_8nt_mkv5_m8 versus MA0506.1_rc (NRF1_rc); m=1/5; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.792576; ---yGCGCAkGCGC- ; cor=; Ncor= a 0 0 0 0.0 0.0 0.0 286.0 0.0 3693.0 313.0 140.0 0.0 0.0 0.0 0 c 0 0 0 1575.0 0.0 4275.0 0.0 4624.0 528.0 935.0 468.0 4239.0 0.0 3647.0 0 g 0 0 0 804.0 4550.0 349.0 4338.0 0.0 403.0 1862.0 4016.0 189.0 4001.0 375.0 0 t 0 0 0 2245.0 74.0 0.0 0.0 0.0 0.0 1514.0 0.0 196.0 623.0 602.0 0

MA1648.1_rc_shift4 (TCF12(var.2)_rc)
; oligos_8nt_mkv5_m8 versus MA1648.1_rc (TCF12(var.2)_rc); m=2/5; ncol2=11; w=11; offset=2; strand=R; shift=4; score=0.617836; ----srGCAGGTGss ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0

MA0522.3_rc_shift4 (TCF3_rc)
; oligos_8nt_mkv5_m8 versus MA0522.3_rc (TCF3_rc); m=3/5; ncol2=11; w=11; offset=2; strand=R; shift=4; score=0.612046; ----ssGCAGGTGbs ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0

MA0472.2_rc_shift3 (EGR2_rc)
; oligos_8nt_mkv5_m8 versus MA0472.2_rc (EGR2_rc); m=4/5; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.592308; ---tGCGTGGGCGk- ; cor=; Ncor= a 0 0 0 430.0 115.0 171.0 23.0 2.0 277.0 13.0 29.0 222.0 73.0 142.0 0 c 0 0 0 542.0 20.0 4034.0 2.0 26.0 38.0 15.0 25.0 3731.0 28.0 94.0 0 g 0 0 0 157.0 1585.0 0.0 1573.0 110.0 1468.0 1554.0 1558.0 0.0 1551.0 679.0 0 t 0 0 0 1731.0 4.0 106.0 0.0 2147.0 0.0 24.0 6.0 295.0 0.0 1157.0 0

MA1650.1_shift0 (ZBTB14)
; oligos_8nt_mkv5_m8 versus MA1650.1 (ZBTB14); m=5/5; ncol2=12; w=10; offset=-2; strand=D; shift=0; score=0.469351; ssCCGCGCACss--- ; cor=; Ncor= a 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 0 0 0 c 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 0 0 0 g 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 0 0 0 t 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0 0 0 0

One-to-n matrix alignment; reference matrix: positions_6nt_m6_shift2 ; 33 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m6_shift2 (positions_6nt_m6positions_6nt_m6)
; positions_6nt_m6 (positions_6nt_m6positions_6nt_m6); m=0 (reference); ncol1=15; shift=2; ncol=18; --gsrACAGCTGCtgcs- ; Alignment reference a 0 0 528 464 853 1703 3 2326 14 9 28 5 68 381 331 398 414 0 c 0 0 564 670 574 172 2324 1 21 2293 7 2 1972 326 482 819 671 0 g 0 0 883 709 742 363 0 5 2296 23 5 2325 108 155 1235 547 675 0 t 0 0 359 491 165 96 7 2 3 9 2294 2 186 1472 286 570 574 0

MA0832.1_shift2 (Tcf21)
; positions_6nt_m6 versus MA0832.1 (Tcf21); m=1/32; ncol2=14; w=14; offset=0; strand=D; shift=2; score=0.791338; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_6nt_m6 versus MA0500.2_rc (MYOG_rc); m=2/32; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.749615; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; positions_6nt_m6 versus MA1485.1_rc (FERD3L_rc); m=3/32; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.748458; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; positions_6nt_m6 versus MA0499.2_rc (MYOD1_rc); m=4/32; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.738461; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; positions_6nt_m6 versus MA1619.1 (Ptf1a(var.2)); m=5/32; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.714858; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1641.1_shift3 (MYF5)
; positions_6nt_m6 versus MA1641.1 (MYF5); m=6/32; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.714469; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA0521.1_shift4 (Tcf12)
; positions_6nt_m6 versus MA0521.1 (Tcf12); m=7/32; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.695012; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1621.1_rc_shift2 (Rbpjl_rc)
; positions_6nt_m6 versus MA1621.1_rc (Rbpjl_rc); m=8/32; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.680369; --grsaCAGGTGtkbs-- ; cor=; Ncor= a 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 0 c 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 0 g 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 0 t 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; positions_6nt_m6 versus MA1631.1 (ASCL1(var.2)); m=9/32; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.659065; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA1618.1_shift3 (Ptf1a)
; positions_6nt_m6 versus MA1618.1 (Ptf1a); m=10/32; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.656029; ---dmaCAGATGttkh-- ; cor=; Ncor= a 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 0 c 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 0 g 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 0 t 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0 0

MA0745.2_rc_shift2 (SNAI2_rc)
; positions_6nt_m6 versus MA0745.2_rc (SNAI2_rc); m=11/32; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.654736; --rykACAGGTGcrt--- ; cor=; Ncor= a 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 c 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 g 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 t 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; positions_6nt_m6 versus MA0830.2_rc (TCF4_rc); m=12/32; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.635578; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA0816.1_shift4 (Ascl2)
; positions_6nt_m6 versus MA0816.1 (Ascl2); m=13/32; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.633256; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1529.1_rc_shift0 (NHLH2_rc)
; positions_6nt_m6 versus MA1529.1_rc (NHLH2_rc); m=14/32; ncol2=18; w=15; offset=-2; strand=R; shift=0; score=0.623653; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; positions_6nt_m6 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=15/32; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.612695; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; positions_6nt_m6 versus MA1635.1 (BHLHE22(var.2)); m=16/32; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.606349; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; positions_6nt_m6 versus MA1100.2_rc (ASCL1_rc); m=17/32; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.605281; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1620.1_shift3 (Ptf1a(var.3))
; positions_6nt_m6 versus MA1620.1 (Ptf1a(var.3)); m=18/32; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.58935; ---rmaCACCTGtky--- ; cor=; Ncor= a 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 c 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 g 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 t 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; positions_6nt_m6 versus MA1467.1_rc (ATOH1(var.2)_rc); m=19/32; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.587834; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; positions_6nt_m6 versus MA0048.2 (NHLH1); m=20/32; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.587127; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; positions_6nt_m6 versus MA0691.1 (TFAP4); m=21/32; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.582285; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0665.1_shift4 (MSC)
; positions_6nt_m6 versus MA0665.1 (MSC); m=22/32; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.581214; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0091.1_shift2 (TAL1::TCF3)
; positions_6nt_m6 versus MA0091.1 (TAL1::TCF3); m=23/32; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.57382; --mgAmCAKMTGkT---- ; cor=; Ncor= a 0 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 c 0 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 g 0 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 t 0 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; positions_6nt_m6 versus MA1648.1 (TCF12(var.2)); m=24/32; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.559643; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift4 (TCF3)
; positions_6nt_m6 versus MA0522.3 (TCF3); m=25/32; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.554665; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; positions_6nt_m6 versus MA0667.1_rc (MYF6_rc); m=26/32; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.543541; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0103.3_shift4 (ZEB1)
; positions_6nt_m6 versus MA0103.3 (ZEB1); m=27/32; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.517558; ----ssCACCTGsss--- ; cor=; Ncor= a 0 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 c 0 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 g 0 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 t 0 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0

MA0820.1_rc_shift4 (FIGLA_rc)
; positions_6nt_m6 versus MA0820.1_rc (FIGLA_rc); m=28/32; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.514092; ----wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

MA1559.1_shift4 (SNAI3)
; positions_6nt_m6 versus MA1559.1 (SNAI3); m=29/32; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.492446; ----arCAGGTGya---- ; cor=; Ncor= a 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0

MA1558.1_rc_shift4 (SNAI1_rc)
; positions_6nt_m6 versus MA1558.1_rc (SNAI1_rc); m=30/32; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.486928; ----yrCACCTGyh---- ; cor=; Ncor= a 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0

MA0100.3_rc_shift4 (MYB_rc)
; positions_6nt_m6 versus MA0100.3_rc (MYB_rc); m=31/32; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.46977; ----kdCAGTTGvk---- ; cor=; Ncor= a 0 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 0 0 0 c 0 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 0 0 0 g 0 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 0 0 0 t 0 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0 0 0 0

MA1638.1_rc_shift4 (HAND2_rc)
; positions_6nt_m6 versus MA1638.1_rc (HAND2_rc); m=32/32; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.46866; ----rvCATCTGkt---- ; cor=; Ncor= a 0 0 0 0 7783.0 8498.0 49.0 27962.0 23.0 85.0 4.0 70.0 3155.0 7120.0 0 0 0 0 c 0 0 0 0 6108.0 8878.0 29851.0 31.0 38.0 30144.0 647.0 132.0 6994.0 7463.0 0 0 0 0 g 0 0 0 0 10227.0 7690.0 149.0 2276.0 30.0 42.0 410.0 30062.0 11298.0 5564.0 0 0 0 0 t 0 0 0 0 6165.0 5217.0 234.0 14.0 30192.0 12.0 29222.0 19.0 8836.0 10136.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m39_shift1 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m39_shift1 (oligos_6nt_mkv3_m39oligos_6nt_mkv3_m39)
; oligos_6nt_mkv3_m39 (oligos_6nt_mkv3_m39oligos_6nt_mkv3_m39); m=0 (reference); ncol1=10; shift=1; ncol=12; -cvACCGCAgc- ; Alignment reference a 0 43 50 197 0 0 0 1 191 27 40 0 c 0 63 74 0 197 195 0 191 3 42 82 0 g 0 45 53 0 0 2 197 2 3 98 45 0 t 0 46 20 0 0 0 0 3 0 30 30 0

MA0511.2_shift1 (RUNX2)
; oligos_6nt_mkv3_m39 versus MA0511.2 (RUNX2); m=1/3; ncol2=9; w=9; offset=0; strand=D; shift=1; score=0.79127; -wAACCRCAa-- ; cor=; Ncor= a 0 3872.0 6621.0 6621.0 0.0 0.0 1914.0 0.0 6621.0 4202.0 0 0 c 0 1092.0 556.0 325.0 6621.0 6621.0 36.0 6621.0 476.0 677.0 0 0 g 0 326.0 1215.0 0.0 0.0 0.0 4707.0 0.0 458.0 1134.0 0 0 t 0 2748.0 582.0 0.0 0.0 0.0 120.0 0.0 191.0 607.0 0 0

MA0002.2_rc_shift1 (RUNX1_rc)
; oligos_6nt_mkv3_m39 versus MA0002.2_rc (RUNX1_rc); m=2/3; ncol2=11; w=10; offset=0; strand=R; shift=1; score=0.657468; -waaCCACAram ; cor=; Ncor= a 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 c 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 g 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 t 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0

MA0684.2_shift0 (RUNX3)
; oligos_6nt_mkv3_m39 versus MA0684.2 (RUNX3); m=3/3; ncol2=12; w=10; offset=-1; strand=D; shift=0; score=0.627742; awAACCTCAawh ; cor=; Ncor= a 7768.0 9558.0 19136.0 26243.0 427.0 495.0 6357.0 611.0 26121.0 16137.0 8778.0 6879.0 c 6083.0 5007.0 2662.0 315.0 26293.0 26208.0 419.0 26015.0 414.0 3077.0 5994.0 6900.0 g 6685.0 3547.0 3500.0 431.0 198.0 385.0 1911.0 390.0 338.0 4696.0 5642.0 6372.0 t 6841.0 9265.0 2079.0 388.0 459.0 289.0 18690.0 361.0 504.0 3467.0 6963.0 7226.0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m27_shift1 ; 44 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m27_shift1 (oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27)
; oligos_8nt_mkv5_m27 (oligos_8nt_mkv5_m27oligos_8nt_mkv5_m27); m=0 (reference); ncol1=15; shift=1; ncol=16; -srgGAACAGGTGchs ; Alignment reference a 0 79 112 77 30 352 356 1 382 3 10 1 0 30 96 87 c 0 113 68 39 65 6 1 379 0 4 81 0 0 211 114 101 g 0 110 132 224 269 25 24 1 1 369 283 0 382 75 67 122 t 0 81 71 43 19 0 2 2 0 7 9 382 1 67 106 73

MA0744.2_shift0 (SCRT2)
; oligos_8nt_mkv5_m27 versus MA0744.2 (SCRT2); m=1/43; ncol2=16; w=15; offset=-1; strand=D; shift=0; score=0.789135; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0

MA0499.2_rc_shift3 (MYOD1_rc)
; oligos_8nt_mkv5_m27 versus MA0499.2_rc (MYOD1_rc); m=2/43; ncol2=13; w=13; offset=2; strand=R; shift=3; score=0.785696; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0

MA0743.2_shift0 (SCRT1)
; oligos_8nt_mkv5_m27 versus MA0743.2 (SCRT1); m=3/43; ncol2=16; w=15; offset=-1; strand=D; shift=0; score=0.76876; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0

MA0745.2_rc_shift3 (SNAI2_rc)
; oligos_8nt_mkv5_m27 versus MA0745.2_rc (SNAI2_rc); m=4/43; ncol2=13; w=13; offset=2; strand=R; shift=3; score=0.759533; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0

MA0830.2_rc_shift3 (TCF4_rc)
; oligos_8nt_mkv5_m27 versus MA0830.2_rc (TCF4_rc); m=5/43; ncol2=13; w=13; offset=2; strand=R; shift=3; score=0.691194; ---ssggCAGGTGccg ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0

MA1621.1_rc_shift3 (Rbpjl_rc)
; oligos_8nt_mkv5_m27 versus MA1621.1_rc (Rbpjl_rc); m=6/43; ncol2=14; w=13; offset=2; strand=R; shift=3; score=0.690658; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; oligos_8nt_mkv5_m27 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=7/43; ncol2=12; w=12; offset=3; strand=R; shift=4; score=0.690474; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0

MA1631.1_rc_shift3 (ASCL1(var.2)_rc)
; oligos_8nt_mkv5_m27 versus MA1631.1_rc (ASCL1(var.2)_rc); m=8/43; ncol2=13; w=13; offset=2; strand=R; shift=3; score=0.675533; ---gsrGCAGGTGchg ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0

MA0521.1_shift5 (Tcf12)
; oligos_8nt_mkv5_m27 versus MA0521.1 (Tcf12); m=9/43; ncol2=11; w=11; offset=4; strand=D; shift=5; score=0.644776; -----rRCAGCTGswg ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0

MA0832.1_shift3 (Tcf21)
; oligos_8nt_mkv5_m27 versus MA0832.1 (Tcf21); m=10/43; ncol2=14; w=13; offset=2; strand=D; shift=3; score=0.624211; ---ryAACAGCTGTTr ; cor=; Ncor= a 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 c 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 g 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 t 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0

MA1641.1_shift4 (MYF5)
; oligos_8nt_mkv5_m27 versus MA1641.1 (MYF5); m=11/43; ncol2=12; w=12; offset=3; strand=D; shift=4; score=0.621857; ----gvaCAGCTGtbc ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0

MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)
; oligos_8nt_mkv5_m27 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=12/43; ncol2=12; w=12; offset=3; strand=R; shift=4; score=0.618726; ----rmaCAGCTGtky ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0

MA1642.1_shift3 (NEUROG2(var.2))
; oligos_8nt_mkv5_m27 versus MA1642.1 (NEUROG2(var.2)); m=13/43; ncol2=13; w=13; offset=2; strand=D; shift=3; score=0.615938; ---rrraCAGATGGyv ; cor=; Ncor= a 0 0 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 9464.0 c 0 0 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 9034.0 g 0 0 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 8709.0 t 0 0 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0 7184.0

MA1559.1_shift5 (SNAI3)
; oligos_8nt_mkv5_m27 versus MA1559.1 (SNAI3); m=14/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.614506; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0

MA0500.2_rc_shift4 (MYOG_rc)
; oligos_8nt_mkv5_m27 versus MA0500.2_rc (MYOG_rc); m=15/43; ncol2=12; w=12; offset=3; strand=R; shift=4; score= 0.6138; ----sarCAGCTGyts ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0

MA1105.2_shift3 (GRHL2)
; oligos_8nt_mkv5_m27 versus MA1105.2 (GRHL2); m=16/43; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.60371; ---arAACAGGTTtk- ; cor=; Ncor= a 0 0 0 14483.0 17842.0 36467.0 37065.0 503.0 34024.0 2824.0 642.0 1878.0 1752.0 7061.0 8868.0 0 c 0 0 0 9741.0 6996.0 1147.0 712.0 40446.0 1543.0 581.0 987.0 2331.0 2000.0 9341.0 8528.0 0 g 0 0 0 9161.0 10776.0 2646.0 2841.0 609.0 485.0 37226.0 39624.0 748.0 1220.0 7961.0 10536.0 0 t 0 0 0 8493.0 6264.0 1618.0 1260.0 320.0 5826.0 1247.0 625.0 36921.0 36906.0 17515.0 13946.0 0

MA1485.1_rc_shift3 (FERD3L_rc)
; oligos_8nt_mkv5_m27 versus MA1485.1_rc (FERD3L_rc); m=17/43; ncol2=14; w=13; offset=2; strand=R; shift=3; score=0.599736; ---GTrACAGCTGkyr ; cor=; Ncor= a 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 c 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 g 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 t 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0

MA0820.1_rc_shift5 (FIGLA_rc)
; oligos_8nt_mkv5_m27 versus MA0820.1_rc (FIGLA_rc); m=18/43; ncol2=10; w=10; offset=4; strand=R; shift=5; score=0.594687; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0

MA0103.3_rc_shift4 (ZEB1_rc)
; oligos_8nt_mkv5_m27 versus MA0103.3_rc (ZEB1_rc); m=19/43; ncol2=11; w=11; offset=3; strand=R; shift=4; score=0.585078; ----sssCAGGTGss- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0

MA1558.1_shift5 (SNAI1)
; oligos_8nt_mkv5_m27 versus MA1558.1 (SNAI1); m=20/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.568205; -----drCAGGTGyr- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0

MA0665.1_rc_shift5 (MSC_rc)
; oligos_8nt_mkv5_m27 versus MA0665.1_rc (MSC_rc); m=21/43; ncol2=10; w=10; offset=4; strand=R; shift=5; score=0.558788; -----AACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0

MA1618.1_shift4 (Ptf1a)
; oligos_8nt_mkv5_m27 versus MA1618.1 (Ptf1a); m=22/43; ncol2=13; w=12; offset=3; strand=D; shift=4; score=0.557809; ----dmaCAGATGttk ; cor=; Ncor= a 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 c 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 g 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 t 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0

MA1467.1_shift5 (ATOH1(var.2))
; oligos_8nt_mkv5_m27 versus MA1467.1 (ATOH1(var.2)); m=23/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.551636; -----AACAGCTGTY- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0

MA1648.1_rc_shift4 (TCF12(var.2)_rc)
; oligos_8nt_mkv5_m27 versus MA1648.1_rc (TCF12(var.2)_rc); m=24/43; ncol2=11; w=11; offset=3; strand=R; shift=4; score=0.550854; ----srGCAGGTGss- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0

MA0522.3_rc_shift4 (TCF3_rc)
; oligos_8nt_mkv5_m27 versus MA0522.3_rc (TCF3_rc); m=25/43; ncol2=11; w=11; offset=3; strand=R; shift=4; score=0.545701; ----ssGCAGGTGbs- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0

MA1472.1_shift5 (BHLHA15(var.2))
; oligos_8nt_mkv5_m27 versus MA1472.1 (BHLHA15(var.2)); m=26/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.543751; -----avCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0

MA0816.1_shift5 (Ascl2)
; oligos_8nt_mkv5_m27 versus MA0816.1 (Ascl2); m=27/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.542758; -----arCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 c 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 g 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 t 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0

MA1109.1_shift4 (NEUROD1)
; oligos_8nt_mkv5_m27 versus MA1109.1 (NEUROD1); m=28/43; ncol2=13; w=12; offset=3; strand=D; shift=4; score=0.540929; ----graCAGATGGyr ; cor=; Ncor= a 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 c 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 g 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 t 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0

MA0667.1_rc_shift5 (MYF6_rc)
; oligos_8nt_mkv5_m27 versus MA0667.1_rc (MYF6_rc); m=29/43; ncol2=10; w=10; offset=4; strand=R; shift=5; score=0.54055; -----RACAGyTGTT- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 c 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 g 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 t 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0

MA1100.2_shift5 (ASCL1)
; oligos_8nt_mkv5_m27 versus MA1100.2 (ASCL1); m=30/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.531664; -----rrCAGCTGcy- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0

MA0691.1_shift5 (TFAP4)
; oligos_8nt_mkv5_m27 versus MA0691.1 (TFAP4); m=31/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.531248; -----AwCAGCTGwT- ; cor=; Ncor= a 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 c 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 g 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 t 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0

MA0091.1_rc_shift5 (TAL1::TCF3_rc)
; oligos_8nt_mkv5_m27 versus MA0091.1_rc (TAL1::TCF3_rc); m=32/43; ncol2=12; w=11; offset=4; strand=R; shift=5; score=0.513117; -----AmCAKMTGkTc ; cor=; Ncor= a 0 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 c 0 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 g 0 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 t 0 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0

MA0819.1_shift5 (CLOCK)
; oligos_8nt_mkv5_m27 versus MA0819.1 (CLOCK); m=33/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.503077; -----aACACGTGty- ; cor=; Ncor= a 0 0 0 0 0 226.0 429.0 11.0 429.0 16.0 40.0 3.0 0.0 1.0 89.0 0 c 0 0 0 0 0 35.0 85.0 429.0 5.0 429.0 0.0 5.0 3.0 152.0 128.0 0 g 0 0 0 0 0 93.0 89.0 2.0 15.0 0.0 429.0 5.0 429.0 110.0 39.0 0 t 0 0 0 0 0 75.0 13.0 2.0 0.0 28.0 0.0 429.0 9.0 429.0 174.0 0

MA1493.1_rc_shift5 (HES6_rc)
; oligos_8nt_mkv5_m27 versus MA1493.1_rc (HES6_rc); m=34/43; ncol2=10; w=10; offset=4; strand=R; shift=5; score=0.500396; -----rACACGTGCC- ; cor=; Ncor= a 0 0 0 0 0 209.0 439.0 0.0 439.0 0.0 16.0 11.0 15.0 13.0 43.0 0 c 0 0 0 0 0 0.0 0.0 439.0 29.0 439.0 9.0 9.0 19.0 439.0 439.0 0 g 0 0 0 0 0 152.0 21.0 0.0 7.0 12.0 439.0 0.0 439.0 35.0 39.0 0 t 0 0 0 0 0 79.0 33.0 0.0 0.0 10.0 2.0 439.0 17.0 16.0 12.0 0

MA1635.1_shift5 (BHLHE22(var.2))
; oligos_8nt_mkv5_m27 versus MA1635.1 (BHLHE22(var.2)); m=35/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.495968; -----csCAGCTGsg- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 c 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 g 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 t 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0

MA1570.1_shift5 (TFAP4(var.2))
; oligos_8nt_mkv5_m27 versus MA1570.1 (TFAP4(var.2)); m=36/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.495055; -----ahCAyrTGkt- ; cor=; Ncor= a 0 0 0 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 c 0 0 0 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 g 0 0 0 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 t 0 0 0 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0

MA1638.1_shift5 (HAND2)
; oligos_8nt_mkv5_m27 versus MA1638.1 (HAND2); m=37/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.482193; -----amCAGATGby- ; cor=; Ncor= a 0 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 c 0 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 g 0 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 t 0 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0

MA0048.2_rc_shift5 (NHLH1_rc)
; oligos_8nt_mkv5_m27 versus MA0048.2_rc (NHLH1_rc); m=38/43; ncol2=10; w=10; offset=4; strand=R; shift=5; score=0.480878; -----mGCAGCTGCg- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0

MA0626.1_rc_shift5 (Npas2_rc)
; oligos_8nt_mkv5_m27 versus MA0626.1_rc (Npas2_rc); m=39/43; ncol2=10; w=10; offset=4; strand=R; shift=5; score=0.477537; -----kaCACGTGsh- ; cor=; Ncor= a 0 0 0 0 0 202.0 566.0 0.0 999.0 0.0 0.0 0.0 0.0 48.0 257.0 0 c 0 0 0 0 0 202.0 188.0 918.0 0.0 918.0 0.0 0.0 0.0 420.0 293.0 0 g 0 0 0 0 0 299.0 172.0 0.0 0.0 0.0 918.0 0.0 999.0 377.0 177.0 0 t 0 0 0 0 0 297.0 74.0 81.0 0.0 81.0 81.0 999.0 0.0 154.0 273.0 0

MA0100.3_rc_shift5 (MYB_rc)
; oligos_8nt_mkv5_m27 versus MA0100.3_rc (MYB_rc); m=40/43; ncol2=10; w=10; offset=4; strand=R; shift=5; score=0.472626; -----kdCAGTTGvk- ; cor=; Ncor= a 0 0 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 c 0 0 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 g 0 0 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 t 0 0 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0

MA0058.3_shift5 (MAX)
; oligos_8nt_mkv5_m27 versus MA0058.3 (MAX); m=41/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.471117; -----amCACGTGcy- ; cor=; Ncor= a 0 0 0 0 0 3307.0 1915.0 39.0 6876.0 0.0 329.0 69.0 0.0 1341.0 1122.0 0 c 0 0 0 0 0 1556.0 2809.0 6876.0 0.0 6876.0 39.0 159.0 27.0 2450.0 2225.0 0 g 0 0 0 0 0 1295.0 1514.0 0.0 87.0 7.0 6876.0 20.0 6876.0 1638.0 986.0 0 t 0 0 0 0 0 719.0 637.0 0.0 38.0 229.0 19.0 6876.0 36.0 1446.0 2543.0 0

MA0807.1_shift8 (TBX5)
; oligos_8nt_mkv5_m27 versus MA0807.1 (TBX5); m=42/43; ncol2=8; w=8; offset=7; strand=D; shift=8; score=0.423945; --------AGGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0

MA0806.1_shift8 (TBX4)
; oligos_8nt_mkv5_m27 versus MA0806.1 (TBX4); m=43/43; ncol2=8; w=8; offset=7; strand=D; shift=8; score=0.418826; --------AGGTGTgA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0

One-to-n matrix alignment; reference matrix: dyads_m3_shift2 ; 23 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m3_shift2 (dyads_m3dyads_m3)
; dyads_m3 (dyads_m3dyads_m3); m=0 (reference); ncol1=14; shift=2; ncol=18; --gsAGCAGCTGCTsc-- ; Alignment reference a 0 0 252 178 942 105 4 1041 12 3 19 3 19 62 170 184 0 0 c 0 0 238 403 58 44 1054 3 34 1018 4 6 899 88 326 407 0 0 g 0 0 392 333 45 899 6 4 1018 34 3 1054 44 58 385 237 0 0 t 0 0 185 153 22 19 3 19 3 12 1041 4 105 859 186 239 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; dyads_m3 versus MA0500.2_rc (MYOG_rc); m=1/22; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.784849; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; dyads_m3 versus MA0832.1_rc (Tcf21_rc); m=2/22; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.77925; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; dyads_m3 versus MA1631.1 (ASCL1(var.2)); m=3/22; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.709841; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA1485.1_shift2 (FERD3L)
; dyads_m3 versus MA1485.1 (FERD3L); m=4/22; ncol2=14; w=14; offset=0; strand=D; shift=2; score=0.705884; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0830.2_shift3 (TCF4)
; dyads_m3 versus MA0830.2 (TCF4); m=5/22; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.690463; ---cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA0816.1_shift4 (Ascl2)
; dyads_m3 versus MA0816.1 (Ascl2); m=6/22; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.688328; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA0521.1_shift4 (Tcf12)
; dyads_m3 versus MA0521.1 (Tcf12); m=7/22; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.675456; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; dyads_m3 versus MA1619.1 (Ptf1a(var.2)); m=8/22; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.673981; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1641.1_shift3 (MYF5)
; dyads_m3 versus MA1641.1 (MYF5); m=9/22; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.670139; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1100.2_shift4 (ASCL1)
; dyads_m3 versus MA1100.2 (ASCL1); m=10/22; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.638276; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; dyads_m3 versus MA0048.2_rc (NHLH1_rc); m=11/22; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.63625; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; dyads_m3 versus MA1472.1 (BHLHA15(var.2)); m=12/22; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.612283; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA0091.1_shift2 (TAL1::TCF3)
; dyads_m3 versus MA0091.1 (TAL1::TCF3); m=13/22; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.610147; --mgAmCAKMTGkT---- ; cor=; Ncor= a 0 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 c 0 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 g 0 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 t 0 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; dyads_m3 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=14/22; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.609926; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1529.1_shift0 (NHLH2)
; dyads_m3 versus MA1529.1 (NHLH2); m=15/22; ncol2=18; w=14; offset=-2; strand=D; shift=0; score=0.602222; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0691.1_shift4 (TFAP4)
; dyads_m3 versus MA0691.1 (TFAP4); m=16/22; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.591745; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; dyads_m3 versus MA0665.1_rc (MSC_rc); m=17/22; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.576077; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; dyads_m3 versus MA1467.1 (ATOH1(var.2)); m=18/22; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.563157; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; dyads_m3 versus MA1648.1_rc (TCF12(var.2)_rc); m=19/22; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.563012; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; dyads_m3 versus MA0522.3_rc (TCF3_rc); m=20/22; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.555587; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA0667.1_shift4 (MYF6)
; dyads_m3 versus MA0667.1 (MYF6); m=21/22; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.528461; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; dyads_m3 versus MA0820.1 (FIGLA); m=22/22; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.508743; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m39_shift4 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m39_shift4 (oligos_7nt_mkv4_m39oligos_7nt_mkv4_m39)
; oligos_7nt_mkv4_m39 (oligos_7nt_mkv4_m39oligos_7nt_mkv4_m39); m=0 (reference); ncol1=12; shift=4; ncol=18; ----ssGGGGTGGAgg-- ; Alignment reference a 0 0 0 0 40 33 0 0 1 7 3 4 3 136 36 46 0 0 c 0 0 0 0 58 63 15 3 6 1 8 3 1 16 46 41 0 0 g 0 0 0 0 62 62 171 188 187 183 3 184 185 38 83 70 0 0 t 0 0 0 0 34 36 8 3 0 3 180 3 5 4 29 37 0 0

MA0528.2_shift4 (ZNF263)
; oligos_7nt_mkv4_m39 versus MA0528.2 (ZNF263); m=1/8; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.784818; ----gsgGGGAGGAsg-- ; cor=; Ncor= a 0 0 0 0 13287.0 11016.0 13001.0 1610.0 789.0 950.0 53900.0 830.0 695.0 52499.0 9539.0 8436.0 0 0 c 0 0 0 0 13040.0 14909.0 6183.0 1659.0 1544.0 972.0 1660.0 966.0 2190.0 1758.0 15413.0 11689.0 0 0 g 0 0 0 0 20283.0 17883.0 28912.0 51804.0 52818.0 53435.0 163.0 52875.0 52741.0 1448.0 24825.0 25115.0 0 0 t 0 0 0 0 9733.0 12535.0 8247.0 1270.0 1192.0 986.0 620.0 1672.0 717.0 638.0 6566.0 11103.0 0 0

MA0039.4_rc_shift5 (KLF4_rc)
; oligos_7nt_mkv4_m39 versus MA0039.4_rc (KLF4_rc); m=2/8; ncol2=12; w=11; offset=1; strand=R; shift=5; score= 0.6966; -----sdGGGTGGGGss- ; cor=; Ncor= a 0 0 0 0 0 12219.0 15012.0 2565.0 1218.0 1129.0 3456.0 976.0 1969.0 4633.0 2560.0 11819.0 11484.0 0 c 0 0 0 0 0 14422.0 6292.0 1005.0 1870.0 1470.0 6598.0 793.0 1422.0 1214.0 1583.0 18473.0 14243.0 0 g 0 0 0 0 0 19217.0 18249.0 51045.0 51112.0 52366.0 161.0 52875.0 45405.0 47865.0 49209.0 14038.0 17520.0 0 t 0 0 0 0 0 9959.0 16264.0 1202.0 1617.0 852.0 45602.0 1173.0 7021.0 2105.0 2465.0 11487.0 12570.0 0

MA0599.1_rc_shift6 (KLF5_rc)
; oligos_7nt_mkv4_m39 versus MA0599.1_rc (KLF5_rc); m=3/8; ncol2=10; w=10; offset=2; strand=R; shift=6; score=0.634156; ------dGGGyGKGGc-- ; cor=; Ncor= a 0 0 0 0 0 0 4101.0 476.0 0.0 0.0 3378.0 0.0 565.0 1603.0 1711.0 2587.0 0 0 c 0 0 0 0 0 0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 7572.0 0 0 g 0 0 0 0 0 0 5595.0 13135.0 13611.0 13611.0 0.0 13611.0 9569.0 12008.0 11900.0 2023.0 0 0 t 0 0 0 0 0 0 3915.0 0.0 0.0 0.0 5051.0 0.0 3477.0 0.0 0.0 1429.0 0 0

MA1600.1_rc_shift2 (ZNF684_rc)
; oligos_7nt_mkv4_m39 versus MA1600.1_rc (ZNF684_rc); m=4/8; ncol2=18; w=12; offset=-2; strand=R; shift=2; score=0.540715; --ymAAGGGGTGGACTGT ; cor=; Ncor= a 0 0 127.0 619.0 1224.0 1107.0 3.0 92.0 6.0 61.0 220.0 67.0 10.0 1259.0 74.0 131.0 19.0 19.0 c 0 0 326.0 514.0 14.0 18.0 0.0 7.0 10.0 63.0 57.0 2.0 25.0 59.0 1135.0 110.0 9.0 68.0 g 0 0 201.0 168.0 59.0 129.0 1263.0 1229.0 1253.0 1226.0 9.0 1221.0 1236.0 14.0 216.0 11.0 1253.0 24.0 t 0 0 606.0 216.0 56.0 249.0 0.0 7.0 44.0 3.0 1012.0 40.0 13.0 9.0 60.0 1184.0 9.0 1238.0

MA0747.1_rc_shift2 (SP8_rc)
; oligos_7nt_mkv4_m39 versus MA0747.1_rc (SP8_rc); m=5/8; ncol2=12; w=10; offset=-2; strand=R; shift=2; score=0.500627; --rGkGGGcGTGky---- ; cor=; Ncor= a 0 0 82.0 39.0 3.0 15.0 0.0 2.0 39.0 5.0 2.0 13.0 4.0 10.0 0 0 0 0 c 0 0 1.0 21.0 6.0 4.0 3.0 6.0 167.0 1.0 1.0 0.0 0.0 78.0 0 0 0 0 g 0 0 52.0 167.0 77.0 167.0 167.0 167.0 37.0 167.0 33.0 167.0 113.0 27.0 0 0 0 0 t 0 0 31.0 13.0 90.0 0.0 2.0 5.0 25.0 7.0 133.0 25.0 54.0 52.0 0 0 0 0

MA1578.1_rc_shift3 (VEZF1_rc)
; oligos_7nt_mkv4_m39 versus MA1578.1_rc (VEZF1_rc); m=6/8; ncol2=10; w=9; offset=-1; strand=R; shift=3; score=0.49473; ---warkGGGGGG----- ; cor=; Ncor= a 0 0 0 339.0 377.0 334.0 125.0 8.0 4.0 0.0 0.0 0.0 0.0 0 0 0 0 0 c 0 0 0 152.0 211.0 70.0 110.0 3.0 0.0 0.0 0.0 0.0 137.0 0 0 0 0 0 g 0 0 0 173.0 171.0 550.0 357.0 977.0 989.0 997.0 995.0 997.0 790.0 0 0 0 0 0 t 0 0 0 333.0 240.0 44.0 406.0 10.0 6.0 2.0 4.0 1.0 71.0 0 0 0 0 0

MA0130.1_rc_shift9 (ZNF354C_rc)
; oligos_7nt_mkv4_m39 versus MA0130.1_rc (ZNF354C_rc); m=7/8; ncol2=6; w=6; offset=5; strand=R; shift=9; score=0.486204; ---------GTGGAk--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 11.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 3.0 0 0 0 g 0 0 0 0 0 0 0 0 0 15.0 0.0 16.0 16.0 2.0 6.0 0 0 0 t 0 0 0 0 0 0 0 0 0 0.0 16.0 0.0 0.0 3.0 7.0 0 0 0

MA0753.2_rc_shift0 (ZNF740_rc)
; oligos_7nt_mkv4_m39 versus MA0753.2_rc (ZNF740_rc); m=8/8; ncol2=13; w=9; offset=-4; strand=R; shift=0; score=0.409611; gTGGGGGGGGyrg----- ; cor=; Ncor= a 246.0 134.0 4.0 3.0 6.0 11.0 15.0 16.0 1.0 49.0 312.0 378.0 185.0 0 0 0 0 0 c 54.0 68.0 6.0 3.0 7.0 3.0 7.0 4.0 14.0 37.0 1055.0 72.0 182.0 0 0 0 0 0 g 1055.0 239.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 343.0 677.0 502.0 0 0 0 0 0 t 207.0 1055.0 115.0 2.0 10.0 23.0 22.0 18.0 110.0 60.0 727.0 162.0 186.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m18_shift3 ; 15 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m18_shift3 (oligos_8nt_mkv5_m18oligos_8nt_mkv5_m18)
; oligos_8nt_mkv5_m18 (oligos_8nt_mkv5_m18oligos_8nt_mkv5_m18); m=0 (reference); ncol1=12; shift=3; ncol=17; ---sgCCCTGCCCss-- ; Alignment reference a 0 0 0 69 35 0 0 1 1 7 3 0 0 60 37 0 0 c 0 0 0 124 71 338 339 334 63 8 340 335 339 121 110 0 0 g 0 0 0 90 182 7 5 9 19 323 0 10 6 89 138 0 0 t 0 0 0 62 57 0 1 1 262 7 2 0 0 75 60 0 0

MA1513.1_shift4 (KLF15)
; oligos_8nt_mkv5_m18 versus MA1513.1 (KLF15); m=1/14; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.784547; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0

MA0039.4_shift3 (KLF4)
; oligos_8nt_mkv5_m18 versus MA0039.4 (KLF4); m=2/14; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.73391; ---ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0

MA1653.1_shift3 (ZNF148)
; oligos_8nt_mkv5_m18 versus MA1653.1 (ZNF148); m=3/14; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.713467; ---ysCCCCTCCCcc-- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0

MA1515.1_shift3 (KLF2)
; oligos_8nt_mkv5_m18 versus MA1515.1 (KLF2); m=4/14; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.668684; ---srCCmCrCCCw--- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0

MA0599.1_shift4 (KLF5)
; oligos_8nt_mkv5_m18 versus MA0599.1 (KLF5); m=5/14; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.666842; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA0746.2_shift3 (SP3)
; oligos_8nt_mkv5_m18 versus MA0746.2 (SP3); m=6/14; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.666351; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0

MA1516.1_shift3 (KLF3)
; oligos_8nt_mkv5_m18 versus MA1516.1 (KLF3); m=7/14; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.651061; ---grCCrCGCCCw--- ; cor=; Ncor= a 0 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 0 c 0 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 0 g 0 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 0 t 0 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0 0

MA1564.1_shift4 (SP9)
; oligos_8nt_mkv5_m18 versus MA1564.1 (SP9); m=8/14; ncol2=12; w=11; offset=1; strand=D; shift=4; score=0.604212; ----rcCmCGCCCmcy- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0

MA0079.4_shift1 (SP1)
; oligos_8nt_mkv5_m18 versus MA0079.4 (SP1); m=9/14; ncol2=15; w=12; offset=-2; strand=D; shift=1; score=0.578204; -ywrRCCACGCCCmCh- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0

MA0597.1_shift7 (THAP1)
; oligos_8nt_mkv5_m18 versus MA0597.1 (THAP1); m=10/14; ncol2=9; w=8; offset=4; strand=D; shift=7; score=0.552238; -------ytGCCMkya- ; cor=; Ncor= a 0 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 0 c 0 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 0 g 0 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 0 t 0 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0 0

MA0516.2_shift0 (SP2)
; oligos_8nt_mkv5_m18 versus MA0516.2 (SP2); m=11/14; ncol2=17; w=12; offset=-3; strand=D; shift=0; score=0.539162; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0

MA0685.1_shift1 (SP4)
; oligos_8nt_mkv5_m18 versus MA0685.1 (SP4); m=12/14; ncol2=17; w=12; offset=-2; strand=D; shift=1; score=0.513163; -ywrGCCACGCCCmCty ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0

MA0738.1_shift7 (HIC2)
; oligos_8nt_mkv5_m18 versus MA0738.1 (HIC2); m=13/14; ncol2=9; w=8; offset=4; strand=D; shift=7; score=0.472637; -------rTGCCMrsy- ; cor=; Ncor= a 0 0 0 0 0 0 0 2606.0 0.0 494.0 23.0 435.0 1466.0 2493.0 770.0 760.0 0 c 0 0 0 0 0 0 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 710.0 2200.0 1732.0 0 g 0 0 0 0 0 0 0 2285.0 0.0 4891.0 14.0 0.0 0.0 1290.0 1237.0 1001.0 0 t 0 0 0 0 0 0 0 367.0 4891.0 151.0 0.0 59.0 0.0 399.0 684.0 1398.0 0

MA1102.2_rc_shift0 (CTCFL_rc)
; oligos_8nt_mkv5_m18 versus MA1102.2_rc (CTCFL_rc); m=14/14; ncol2=12; w=9; offset=-3; strand=R; shift=0; score=0.42104; scGCCCCCTGsy----- ; cor=; Ncor= a 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 0 0 0 0 0 c 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 0 0 0 0 0 g 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 0 0 0 0 0 t 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m21_shift3 ; 14 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m21_shift3 (oligos_7nt_mkv4_m21oligos_7nt_mkv4_m21)
; oligos_7nt_mkv4_m21 (oligos_7nt_mkv4_m21oligos_7nt_mkv4_m21); m=0 (reference); ncol1=12; shift=3; ncol=17; ---csCCCAGCCCsg-- ; Alignment reference a 0 0 0 74 39 4 2 0 256 3 1 1 0 50 47 0 0 c 0 0 0 130 95 319 324 327 63 16 335 329 329 122 82 0 0 g 0 0 0 79 157 8 11 10 19 313 2 6 8 105 156 0 0 t 0 0 0 55 47 7 1 1 0 6 0 2 1 61 53 0 0

MA1513.1_shift4 (KLF15)
; oligos_7nt_mkv4_m21 versus MA1513.1 (KLF15); m=1/13; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.782547; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0

MA0039.4_shift3 (KLF4)
; oligos_7nt_mkv4_m21 versus MA0039.4 (KLF4); m=2/13; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.727447; ---ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0

MA1653.1_shift3 (ZNF148)
; oligos_7nt_mkv4_m21 versus MA1653.1 (ZNF148); m=3/13; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.708643; ---ysCCCCTCCCcc-- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0

MA1515.1_shift3 (KLF2)
; oligos_7nt_mkv4_m21 versus MA1515.1 (KLF2); m=4/13; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.661914; ---srCCmCrCCCw--- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0

MA0599.1_shift4 (KLF5)
; oligos_7nt_mkv4_m21 versus MA0599.1 (KLF5); m=5/13; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.659856; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA0746.2_shift3 (SP3)
; oligos_7nt_mkv4_m21 versus MA0746.2 (SP3); m=6/13; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.648829; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0

MA1516.1_shift3 (KLF3)
; oligos_7nt_mkv4_m21 versus MA1516.1 (KLF3); m=7/13; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.642793; ---grCCrCGCCCw--- ; cor=; Ncor= a 0 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 0 c 0 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 0 g 0 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 0 t 0 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0 0

MA1564.1_shift4 (SP9)
; oligos_7nt_mkv4_m21 versus MA1564.1 (SP9); m=8/13; ncol2=12; w=11; offset=1; strand=D; shift=4; score=0.592929; ----rcCmCGCCCmcy- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0

MA0079.4_shift1 (SP1)
; oligos_7nt_mkv4_m21 versus MA0079.4 (SP1); m=9/13; ncol2=15; w=12; offset=-2; strand=D; shift=1; score=0.561519; -ywrRCCACGCCCmCh- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0

MA1599.1_shift1 (ZNF682)
; oligos_7nt_mkv4_m21 versus MA1599.1 (ZNF682); m=10/13; ncol2=16; w=12; offset=-2; strand=D; shift=1; score=0.536803; -crGGCyAAGCCCCwrt ; cor=; Ncor= a 0 205.0 304.0 110.0 103.0 100.0 48.0 953.0 999.0 6.0 13.0 5.0 7.0 66.0 367.0 324.0 192.0 c 0 423.0 234.0 85.0 42.0 795.0 597.0 72.0 31.0 7.0 999.0 1033.0 1034.0 896.0 117.0 254.0 260.0 g 0 214.0 349.0 774.0 877.0 105.0 55.0 20.0 22.0 1038.0 13.0 9.0 10.0 32.0 118.0 300.0 194.0 t 0 216.0 171.0 89.0 36.0 58.0 358.0 13.0 6.0 7.0 33.0 11.0 7.0 64.0 456.0 180.0 412.0

MA0516.2_shift0 (SP2)
; oligos_7nt_mkv4_m21 versus MA0516.2 (SP2); m=11/13; ncol2=17; w=12; offset=-3; strand=D; shift=0; score=0.527906; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0

MA0685.1_shift1 (SP4)
; oligos_7nt_mkv4_m21 versus MA0685.1 (SP4); m=12/13; ncol2=17; w=12; offset=-2; strand=D; shift=1; score=0.497986; -ywrGCCACGCCCmCty ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0

MA0597.1_shift7 (THAP1)
; oligos_7nt_mkv4_m21 versus MA0597.1 (THAP1); m=13/13; ncol2=9; w=8; offset=4; strand=D; shift=7; score=0.460976; -------ytGCCMkya- ; cor=; Ncor= a 0 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 0 c 0 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 0 g 0 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 0 t 0 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m3_shift2 ; 39 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m3_shift2 (oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3)
; oligos_8nt_mkv5_m3 (oligos_8nt_mkv5_m3oligos_8nt_mkv5_m3); m=0 (reference); ncol1=13; shift=2; ncol=16; --srgAGCAGGTGbc- ; Alignment reference a 0 0 98 122 44 437 48 0 441 1 11 1 2 59 89 0 c 0 0 143 85 85 2 1 439 5 10 39 15 2 136 151 0 g 0 0 152 183 281 11 393 10 4 437 395 2 445 136 111 0 t 0 0 57 60 40 0 8 1 0 2 5 432 1 119 99 0

MA1648.1_rc_shift4 (TCF12(var.2)_rc)
; oligos_8nt_mkv5_m3 versus MA1648.1_rc (TCF12(var.2)_rc); m=1/38; ncol2=11; w=11; offset=2; strand=R; shift=4; score=0.77697; ----srGCAGGTGss- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0

MA1631.1_rc_shift3 (ASCL1(var.2)_rc)
; oligos_8nt_mkv5_m3 versus MA1631.1_rc (ASCL1(var.2)_rc); m=2/38; ncol2=13; w=12; offset=1; strand=R; shift=3; score=0.774046; ---gsrGCAGGTGchg ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0

MA0522.3_rc_shift4 (TCF3_rc)
; oligos_8nt_mkv5_m3 versus MA0522.3_rc (TCF3_rc); m=3/38; ncol2=11; w=11; offset=2; strand=R; shift=4; score=0.773576; ----ssGCAGGTGbs- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0

MA0830.2_rc_shift3 (TCF4_rc)
; oligos_8nt_mkv5_m3 versus MA0830.2_rc (TCF4_rc); m=4/38; ncol2=13; w=12; offset=1; strand=R; shift=3; score=0.756654; ---ssggCAGGTGccg ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0

MA0103.3_rc_shift4 (ZEB1_rc)
; oligos_8nt_mkv5_m3 versus MA0103.3_rc (ZEB1_rc); m=5/38; ncol2=11; w=11; offset=2; strand=R; shift=4; score=0.739005; ----sssCAGGTGss- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0

MA1558.1_shift5 (SNAI1)
; oligos_8nt_mkv5_m3 versus MA1558.1 (SNAI1); m=6/38; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.695052; -----drCAGGTGyr- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0

MA1559.1_shift5 (SNAI3)
; oligos_8nt_mkv5_m3 versus MA1559.1 (SNAI3); m=7/38; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.677457; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0

MA0745.2_rc_shift3 (SNAI2_rc)
; oligos_8nt_mkv5_m3 versus MA0745.2_rc (SNAI2_rc); m=8/38; ncol2=13; w=12; offset=1; strand=R; shift=3; score=0.670961; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0

MA0499.2_rc_shift3 (MYOD1_rc)
; oligos_8nt_mkv5_m3 versus MA0499.2_rc (MYOD1_rc); m=9/38; ncol2=13; w=12; offset=1; strand=R; shift=3; score=0.65739; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0

MA0820.1_rc_shift5 (FIGLA_rc)
; oligos_8nt_mkv5_m3 versus MA0820.1_rc (FIGLA_rc); m=10/38; ncol2=10; w=10; offset=3; strand=R; shift=5; score=0.652268; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0

MA1628.1_shift2 (Zic1::Zic2)
; oligos_8nt_mkv5_m3 versus MA1628.1 (Zic1::Zic2); m=11/38; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.650091; --cvCAGCAGGsr--- ; cor=; Ncor= a 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 0 0 c 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 0 0 g 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 0 0 t 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0 0 0

MA1621.1_rc_shift3 (Rbpjl_rc)
; oligos_8nt_mkv5_m3 versus MA1621.1_rc (Rbpjl_rc); m=12/38; ncol2=14; w=12; offset=1; strand=R; shift=3; score=0.649278; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; oligos_8nt_mkv5_m3 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=13/38; ncol2=12; w=11; offset=2; strand=R; shift=4; score=0.636277; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0

MA1100.2_shift5 (ASCL1)
; oligos_8nt_mkv5_m3 versus MA1100.2 (ASCL1); m=14/38; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.623916; -----rrCAGCTGcy- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0

MA0816.1_rc_shift5 (Ascl2_rc)
; oligos_8nt_mkv5_m3 versus MA0816.1_rc (Ascl2_rc); m=15/38; ncol2=10; w=10; offset=3; strand=R; shift=5; score=0.618869; -----rrCAGCTGyt- ; cor=; Ncor= a 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 c 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 g 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 t 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0

MA0059.1_shift4 (MAX::MYC)
; oligos_8nt_mkv5_m3 versus MA0059.1 (MAX::MYC); m=16/38; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.604769; ----rAsCACGTGGt- ; cor=; Ncor= a 0 0 0 0 7.0 15.0 2.0 1.0 21.0 0.0 1.0 0.0 0.0 1.0 3.0 0 c 0 0 0 0 1.0 1.0 9.0 20.0 0.0 20.0 0.0 1.0 0.0 1.0 5.0 0 g 0 0 0 0 9.0 4.0 9.0 0.0 0.0 0.0 20.0 0.0 21.0 18.0 0.0 0 t 0 0 0 0 4.0 1.0 1.0 0.0 0.0 1.0 0.0 20.0 0.0 1.0 13.0 0

MA0744.2_shift0 (SCRT2)
; oligos_8nt_mkv5_m3 versus MA0744.2 (SCRT2); m=17/38; ncol2=16; w=13; offset=-2; strand=D; shift=0; score=0.59399; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0

MA0048.2_rc_shift5 (NHLH1_rc)
; oligos_8nt_mkv5_m3 versus MA0048.2_rc (NHLH1_rc); m=18/38; ncol2=10; w=10; offset=3; strand=R; shift=5; score=0.591414; -----mGCAGCTGCg- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0

MA0743.2_shift0 (SCRT1)
; oligos_8nt_mkv5_m3 versus MA0743.2 (SCRT1); m=19/38; ncol2=16; w=13; offset=-2; strand=D; shift=0; score=0.589176; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0

MA0500.2_rc_shift4 (MYOG_rc)
; oligos_8nt_mkv5_m3 versus MA0500.2_rc (MYOG_rc); m=20/38; ncol2=12; w=11; offset=2; strand=R; shift=4; score=0.588481; ----sarCAGCTGyts ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0

MA1629.1_shift0 (Zic2)
; oligos_8nt_mkv5_m3 versus MA1629.1 (Zic2); m=21/38; ncol2=14; w=12; offset=-2; strand=D; shift=0; score=0.582869; mkCaCAGCAGGrrg-- ; cor=; Ncor= a 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0 0 0 c 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0 0 0 g 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0 0 0 t 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0 0 0

MA1472.1_shift5 (BHLHA15(var.2))
; oligos_8nt_mkv5_m3 versus MA1472.1 (BHLHA15(var.2)); m=22/38; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.582843; -----avCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0

MA0147.3_rc_shift4 (MYC_rc)
; oligos_8nt_mkv5_m3 versus MA0147.3_rc (MYC_rc); m=23/38; ncol2=12; w=11; offset=2; strand=R; shift=4; score=0.560371; ----srgCACGTGGss ; cor=; Ncor= a 0 0 0 0 1054.0 1421.0 524.0 46.0 4658.0 38.0 293.0 113.0 27.0 286.0 879.0 910.0 c 0 0 0 0 1348.0 1036.0 1198.0 4817.0 63.0 4578.0 70.0 170.0 31.0 472.0 1757.0 1649.0 g 0 0 0 0 1785.0 1524.0 2801.0 56.0 162.0 157.0 4525.0 59.0 4840.0 3746.0 1287.0 1345.0 t 0 0 0 0 755.0 961.0 419.0 23.0 59.0 169.0 54.0 4600.0 44.0 438.0 1019.0 1038.0

MA1635.1_rc_shift5 (BHLHE22(var.2)_rc)
; oligos_8nt_mkv5_m3 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=24/38; ncol2=10; w=10; offset=3; strand=R; shift=5; score=0.558063; -----csCAGCTGsg- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 c 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 g 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 t 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0

MA0665.1_rc_shift5 (MSC_rc)
; oligos_8nt_mkv5_m3 versus MA0665.1_rc (MSC_rc); m=25/38; ncol2=10; w=10; offset=3; strand=R; shift=5; score=0.557833; -----AACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0

MA0521.1_shift5 (Tcf12)
; oligos_8nt_mkv5_m3 versus MA0521.1 (Tcf12); m=26/38; ncol2=11; w=10; offset=3; strand=D; shift=5; score=0.556438; -----rRCAGCTGswg ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0

MA0058.3_rc_shift5 (MAX_rc)
; oligos_8nt_mkv5_m3 versus MA0058.3_rc (MAX_rc); m=27/38; ncol2=10; w=10; offset=3; strand=R; shift=5; score=0.549915; -----rgCACGTGkt- ; cor=; Ncor= a 0 0 0 0 0 2543.0 1446.0 36.0 6876.0 19.0 229.0 38.0 0.0 637.0 719.0 0 c 0 0 0 0 0 986.0 1638.0 6876.0 20.0 6876.0 7.0 87.0 0.0 1514.0 1295.0 0 g 0 0 0 0 0 2225.0 2450.0 27.0 159.0 39.0 6876.0 0.0 6876.0 2809.0 1556.0 0 t 0 0 0 0 0 1122.0 1341.0 0.0 69.0 329.0 0.0 6876.0 39.0 1915.0 3307.0 0

MA1467.1_shift5 (ATOH1(var.2))
; oligos_8nt_mkv5_m3 versus MA1467.1 (ATOH1(var.2)); m=28/38; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.546986; -----AACAGCTGTY- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0

MA0825.1_shift5 (MNT)
; oligos_8nt_mkv5_m3 versus MA0825.1 (MNT); m=29/38; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.54638; -----avCACGTGcy- ; cor=; Ncor= a 0 0 0 0 0 279.0 187.0 27.0 681.0 0.0 15.0 0.0 0.0 150.0 159.0 0 c 0 0 0 0 0 128.0 228.0 681.0 0.0 681.0 0.0 0.0 0.0 281.0 229.0 0 g 0 0 0 0 0 145.0 203.0 0.0 0.0 7.0 681.0 15.0 681.0 131.0 75.0 0 t 0 0 0 0 0 129.0 63.0 5.0 21.0 16.0 0.0 681.0 25.0 120.0 219.0 0

MA1638.1_shift5 (HAND2)
; oligos_8nt_mkv5_m3 versus MA1638.1 (HAND2); m=30/38; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.541969; -----amCAGATGby- ; cor=; Ncor= a 0 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 c 0 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 g 0 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 t 0 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0

MA0622.1_shift6 (Mlxip)
; oligos_8nt_mkv5_m3 versus MA0622.1 (Mlxip); m=31/38; ncol2=8; w=8; offset=4; strand=D; shift=6; score=0.457006; ------bCACGTGk-- ; cor=; Ncor= a 0 0 0 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 0 0 c 0 0 0 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 0 0 g 0 0 0 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 0 0 t 0 0 0 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0 0 0

MA0807.1_shift8 (TBX5)
; oligos_8nt_mkv5_m3 versus MA0807.1 (TBX5); m=32/38; ncol2=8; w=7; offset=6; strand=D; shift=8; score=0.448894; --------AGGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0

MA0806.1_shift8 (TBX4)
; oligos_8nt_mkv5_m3 versus MA0806.1 (TBX4); m=33/38; ncol2=8; w=7; offset=6; strand=D; shift=8; score=0.448738; --------AGGTGTgA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0

MA0803.1_shift8 (TBX15)
; oligos_8nt_mkv5_m3 versus MA0803.1 (TBX15); m=34/38; ncol2=8; w=7; offset=6; strand=D; shift=8; score=0.430834; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10502.0 458.0 19.0 61.0 0.0 140.0 44.0 10502.0 c 0 0 0 0 0 0 0 0 74.0 101.0 7.0 175.0 8.0 435.0 454.0 71.0 g 0 0 0 0 0 0 0 0 664.0 10502.0 10502.0 245.0 10502.0 324.0 10502.0 306.0 t 0 0 0 0 0 0 0 0 112.0 103.0 0.0 10502.0 0.0 10502.0 937.0 96.0

MA0805.1_shift8 (TBX1)
; oligos_8nt_mkv5_m3 versus MA0805.1 (TBX1); m=35/38; ncol2=8; w=7; offset=6; strand=D; shift=8; score=0.423417; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 11931.0 1560.0 0.0 28.0 0.0 142.0 141.0 11931.0 c 0 0 0 0 0 0 0 0 113.0 711.0 0.0 214.0 5.0 613.0 720.0 33.0 g 0 0 0 0 0 0 0 0 1007.0 11931.0 11931.0 141.0 11931.0 109.0 11931.0 18.0 t 0 0 0 0 0 0 0 0 564.0 669.0 0.0 11931.0 0.0 11931.0 1039.0 0.0

MA0801.1_shift8 (MGA)
; oligos_8nt_mkv5_m3 versus MA0801.1 (MGA); m=36/38; ncol2=8; w=7; offset=6; strand=D; shift=8; score=0.417914; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 30489.0 4310.0 16.0 12.0 14.0 1042.0 689.0 30489.0 c 0 0 0 0 0 0 0 0 1151.0 3737.0 509.0 3534.0 1.0 3089.0 1753.0 110.0 g 0 0 0 0 0 0 0 0 8873.0 30489.0 30489.0 96.0 30489.0 381.0 30489.0 920.0 t 0 0 0 0 0 0 0 0 4160.0 1929.0 104.0 30489.0 11.0 30489.0 6465.0 274.0

MA1565.1_shift6 (TBX18)
; oligos_8nt_mkv5_m3 versus MA1565.1 (TBX18); m=37/38; ncol2=12; w=9; offset=4; strand=D; shift=6; score=0.417043; ------rrAGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 216.0 343.0 778.0 73.0 14.0 7.0 21.0 100.0 52.0 778.0 c 0 0 0 0 0 0 86.0 103.0 62.0 57.0 0.0 80.0 6.0 98.0 161.0 1.0 g 0 0 0 0 0 0 316.0 435.0 159.0 778.0 778.0 0.0 778.0 109.0 778.0 5.0 t 0 0 0 0 0 0 160.0 148.0 59.0 47.0 0.0 778.0 2.0 778.0 32.0 34.0

MA1567.1_shift7 (TBX6)
; oligos_8nt_mkv5_m3 versus MA1567.1 (TBX6); m=38/38; ncol2=10; w=8; offset=5; strand=D; shift=7; score=0.411415; -------ragGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 2998.0 11087.0 1882.0 58.0 44.0 14.0 552.0 1430.0 11087.0 c 0 0 0 0 0 0 0 1630.0 1173.0 2913.0 63.0 1002.0 0.0 3053.0 4876.0 652.0 g 0 0 0 0 0 0 0 4003.0 3347.0 11087.0 11087.0 0.0 11087.0 320.0 11087.0 2251.0 t 0 0 0 0 0 0 0 2456.0 2157.0 1058.0 0.0 11087.0 12.0 11087.0 5964.0 713.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m14_shift0 ; 35 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m14_shift0 (oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14)
; oligos_6nt_mkv3_m14 (oligos_6nt_mkv3_m14oligos_6nt_mkv3_m14); m=0 (reference); ncol1=16; shift=0; ncol=16; srgaACAGCTGTctss ; Alignment reference a 275 299 147 622 855 1 1133 7 10 2 2 36 54 227 166 206 c 328 225 231 216 84 1136 1 16 1102 2 1 117 699 277 407 372 g 356 416 635 235 166 1 2 1114 17 0 1135 53 217 176 318 285 t 180 199 126 66 34 1 3 2 10 1135 1 933 169 459 248 276

MA0832.1_rc_shift1 (Tcf21_rc)
; oligos_6nt_mkv3_m14 versus MA0832.1_rc (Tcf21_rc); m=1/34; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.774972; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA1641.1_rc_shift2 (MYF5_rc)
; oligos_6nt_mkv3_m14 versus MA1641.1_rc (MYF5_rc); m=2/34; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.723637; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; oligos_6nt_mkv3_m14 versus MA1619.1 (Ptf1a(var.2)); m=3/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.713123; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA1621.1_shift1 (Rbpjl)
; oligos_6nt_mkv3_m14 versus MA1621.1 (Rbpjl); m=4/34; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.703286; -svmaCACCTGtsyc- ; cor=; Ncor= a 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0

MA1485.1_shift1 (FERD3L)
; oligos_6nt_mkv3_m14 versus MA1485.1 (FERD3L); m=5/34; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.700295; -GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0500.2_rc_shift2 (MYOG_rc)
; oligos_6nt_mkv3_m14 versus MA0500.2_rc (MYOG_rc); m=6/34; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.669532; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA1618.1_rc_shift1 (Ptf1a_rc)
; oligos_6nt_mkv3_m14 versus MA1618.1_rc (Ptf1a_rc); m=7/34; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.660678; -dmaaCATCTGtkh-- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0

MA0499.2_shift2 (MYOD1)
; oligos_6nt_mkv3_m14 versus MA0499.2 (MYOD1); m=8/34; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.651331; --cwgCACCTGTymy- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0521.1_rc_shift2 (Tcf12_rc)
; oligos_6nt_mkv3_m14 versus MA0521.1_rc (Tcf12_rc); m=9/34; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.618366; --cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1467.1_shift3 (ATOH1(var.2))
; oligos_6nt_mkv3_m14 versus MA1467.1 (ATOH1(var.2)); m=10/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.613947; ---AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA1620.1_rc_shift2 (Ptf1a(var.3)_rc)
; oligos_6nt_mkv3_m14 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=11/34; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.613003; --rmaCAGGTGtky-- ; cor=; Ncor= a 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0

MA0745.2_shift2 (SNAI2)
; oligos_6nt_mkv3_m14 versus MA0745.2 (SNAI2); m=12/34; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.588301; --aygCACCTGTmry- ; cor=; Ncor= a 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA1472.1_shift3 (BHLHA15(var.2))
; oligos_6nt_mkv3_m14 versus MA1472.1 (BHLHA15(var.2)); m=13/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.583758; ---avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA0665.1_rc_shift3 (MSC_rc)
; oligos_6nt_mkv3_m14 versus MA0665.1_rc (MSC_rc); m=14/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.583326; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA0796.1_rc_shift2 (TGIF1_rc)
; oligos_6nt_mkv3_m14 versus MA0796.1_rc (TGIF1_rc); m=15/34; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.580803; --TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 c 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 g 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 t 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0

MA0698.1_rc_shift2 (ZBTB18_rc)
; oligos_6nt_mkv3_m14 versus MA0698.1_rc (ZBTB18_rc); m=16/34; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.579437; --vmACATCTGGatd- ; cor=; Ncor= a 0 0 4027.0 8140.0 13670.0 1.0 13670.0 297.0 6.0 206.0 8.0 60.0 13670.0 3319.0 3423.0 0 c 0 0 3876.0 5530.0 36.0 13670.0 94.0 278.0 13670.0 33.0 3.0 1899.0 5212.0 2535.0 2499.0 0 g 0 0 4042.0 177.0 314.0 1.0 15.0 1048.0 245.0 5.0 13670.0 13670.0 1937.0 753.0 4188.0 0 t 0 0 1725.0 210.0 48.0 3.0 14.0 13670.0 3.0 13670.0 21.0 3618.0 1177.0 7064.0 3561.0 0

MA1571.1_rc_shift2 (TGIF2LX_rc)
; oligos_6nt_mkv3_m14 versus MA1571.1_rc (TGIF2LX_rc); m=17/34; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.576035; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0

MA1123.2_shift1 (TWIST1)
; oligos_6nt_mkv3_m14 versus MA1123.2 (TWIST1); m=18/34; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.572065; -awwCCAGATGtbt-- ; cor=; Ncor= a 0 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 6823.0 0 0 c 0 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 6561.0 0 0 g 0 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 6213.0 0 0 t 0 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0 7736.0 0 0

MA0667.1_shift3 (MYF6)
; oligos_6nt_mkv3_m14 versus MA0667.1 (MYF6); m=19/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.566666; ---AACArCTGTY--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA0797.1_rc_shift2 (TGIF2_rc)
; oligos_6nt_mkv3_m14 versus MA0797.1_rc (TGIF2_rc); m=20/34; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.56452; --TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 c 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 g 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 t 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0

MA1572.1_rc_shift2 (TGIF2LY_rc)
; oligos_6nt_mkv3_m14 versus MA1572.1_rc (TGIF2LY_rc); m=21/34; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.56313; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 0 c 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 0 g 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 0 t 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0 0

MA0691.1_shift3 (TFAP4)
; oligos_6nt_mkv3_m14 versus MA0691.1 (TFAP4); m=22/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.559957; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0

MA0091.1_shift1 (TAL1::TCF3)
; oligos_6nt_mkv3_m14 versus MA0091.1 (TAL1::TCF3); m=23/34; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.558584; -mgAmCAKMTGkT--- ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0

MA0816.1_shift3 (Ascl2)
; oligos_6nt_mkv3_m14 versus MA0816.1 (Ascl2); m=24/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.554644; ---arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA1635.1_rc_shift3 (BHLHE22(var.2)_rc)
; oligos_6nt_mkv3_m14 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=25/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.55272; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA1655.1_shift0 (ZNF341)
; oligos_6nt_mkv3_m14 versus MA1655.1 (ZNF341); m=26/34; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.542603; grGAACAGCcas---- ; cor=; Ncor= a 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 0 0 c 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 0 0 g 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 0 0 t 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0 0 0

MA0783.1_rc_shift2 (PKNOX2_rc)
; oligos_6nt_mkv3_m14 versus MA0783.1_rc (PKNOX2_rc); m=27/34; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.535873; --TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 c 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 g 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 t 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0

MA1100.2_shift3 (ASCL1)
; oligos_6nt_mkv3_m14 versus MA1100.2 (ASCL1); m=28/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.534825; ---rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0820.1_shift3 (FIGLA)
; oligos_6nt_mkv3_m14 versus MA0820.1 (FIGLA); m=29/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.498017; ---wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

MA0048.2_shift3 (NHLH1)
; oligos_6nt_mkv3_m14 versus MA0048.2 (NHLH1); m=30/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.488503; ---cGCAGCTGCk--- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0

MA1638.1_shift3 (HAND2)
; oligos_6nt_mkv3_m14 versus MA1638.1 (HAND2); m=31/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.447519; ---amCAGATGby--- ; cor=; Ncor= a 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 0 0 c 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 0 0 g 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 0 0 t 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0 0 0

MA1570.1_shift3 (TFAP4(var.2))
; oligos_6nt_mkv3_m14 versus MA1570.1 (TFAP4(var.2)); m=32/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.442806; ---ahCAyrTGkt--- ; cor=; Ncor= a 0 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 0 0 c 0 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 0 0 g 0 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 0 0 t 0 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0 0 0

MA1559.1_shift3 (SNAI3)
; oligos_6nt_mkv3_m14 versus MA1559.1 (SNAI3); m=33/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.439997; ---arCAGGTGya--- ; cor=; Ncor= a 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 c 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 g 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 t 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0

MA0100.3_shift3 (MYB)
; oligos_6nt_mkv3_m14 versus MA0100.3 (MYB); m=34/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.438091; ---mbCAACTGhm--- ; cor=; Ncor= a 0 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 0 c 0 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 0 g 0 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 0 t 0 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m27_shift2 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m27_shift2 (dyads_m27dyads_m27)
; dyads_m27 (dyads_m27dyads_m27); m=0 (reference); ncol1=10; shift=2; ncol=17; --yvCATTCCwk----- ; Alignment reference a 0 0 94 181 2 642 0 0 0 0 273 118 0 0 0 0 0 c 0 0 180 216 638 0 0 0 643 642 141 131 0 0 0 0 0 g 0 0 138 161 1 1 0 0 0 1 39 184 0 0 0 0 0 t 0 0 231 85 2 0 643 643 0 0 190 210 0 0 0 0 0

MA0809.2_shift1 (TEAD4)
; dyads_m27 versus MA0809.2 (TEAD4); m=1/10; ncol2=12; w=10; offset=-1; strand=D; shift=1; score=0.772861; -ycACATTCCAgs---- ; cor=; Ncor= a 0 18932.0 17306.0 61263.0 7543.0 74797.0 965.0 2673.0 1366.0 1314.0 61802.0 16617.0 19272.0 0 0 0 0 c 0 22343.0 26577.0 2414.0 66205.0 1218.0 1129.0 1176.0 72555.0 75066.0 3874.0 13864.0 20301.0 0 0 0 0 g 0 15111.0 15427.0 11265.0 3295.0 569.0 1025.0 2100.0 1580.0 212.0 1191.0 32220.0 22630.0 0 0 0 0 t 0 21700.0 18776.0 3144.0 1043.0 1502.0 74967.0 72137.0 2585.0 1494.0 11219.0 15385.0 15883.0 0 0 0 0

MA0808.1_shift3 (TEAD3)
; dyads_m27 versus MA0808.1 (TEAD3); m=2/10; ncol2=8; w=8; offset=1; strand=D; shift=3; score=0.763674; ---rCATTCCw------ ; cor=; Ncor= a 0 0 0 12530.0 2524.0 21444.0 0.0 4566.0 0.0 0.0 21444.0 0 0 0 0 0 0 c 0 0 0 66.0 18920.0 0.0 0.0 23.0 21444.0 21444.0 1039.0 0 0 0 0 0 0 g 0 0 0 8913.0 441.0 0.0 0.0 969.0 0.0 0.0 8654.0 0 0 0 0 0 0 t 0 0 0 1109.0 0.0 0.0 21444.0 16878.0 0.0 4.0 13663.0 0 0 0 0 0 0

MA1121.1_shift1 (TEAD2)
; dyads_m27 versus MA1121.1 (TEAD2); m=3/10; ncol2=13; w=10; offset=-1; strand=D; shift=1; score=0.724539; -hcACATTCCwgsc--- ; cor=; Ncor= a 0 137.0 88.0 441.0 39.0 517.0 2.0 15.0 8.0 8.0 263.0 112.0 111.0 109.0 0 0 0 c 0 145.0 238.0 17.0 478.0 5.0 10.0 8.0 500.0 513.0 60.0 111.0 172.0 221.0 0 0 0 g 0 112.0 81.0 70.0 14.0 11.0 6.0 9.0 10.0 3.0 56.0 207.0 147.0 117.0 0 0 0 t 0 148.0 135.0 14.0 11.0 9.0 524.0 510.0 24.0 18.0 163.0 112.0 112.0 95.0 0 0 0

MA0090.3_shift1 (TEAD1)
; dyads_m27 versus MA0090.3 (TEAD1); m=4/10; ncol2=13; w=10; offset=-1; strand=D; shift=1; score=0.695435; -hyACATTCCAGsm--- ; cor=; Ncor= a 0 17689.0 16651.0 58030.0 6096.0 68106.0 535.0 4976.0 1348.0 702.0 57190.0 9124.0 13252.0 19194.0 0 0 0 c 0 19272.0 22059.0 1248.0 61276.0 646.0 700.0 622.0 66953.0 67635.0 1729.0 6215.0 20002.0 21358.0 0 0 0 g 0 14429.0 12053.0 9179.0 1923.0 946.0 646.0 1210.0 765.0 374.0 2051.0 47856.0 26525.0 16344.0 0 0 0 t 0 19008.0 19635.0 1941.0 1103.0 700.0 68517.0 63590.0 1332.0 1687.0 9428.0 7203.0 10619.0 13502.0 0 0 0

MA0624.1_shift3 (NFATC1)
; dyads_m27 versus MA0624.1 (NFATC1); m=5/10; ncol2=10; w=9; offset=1; strand=D; shift=3; score=0.579635; ---wttTTCCryt---- ; cor=; Ncor= a 0 0 0 383.0 226.0 158.0 19.0 21.0 14.0 9.0 516.0 230.0 230.0 0 0 0 0 c 0 0 0 134.0 193.0 60.0 35.0 29.0 971.0 967.0 45.0 262.0 227.0 0 0 0 0 g 0 0 0 167.0 189.0 122.0 7.0 15.0 8.0 5.0 357.0 126.0 194.0 0 0 0 0 t 0 0 0 316.0 392.0 660.0 939.0 935.0 7.0 18.0 83.0 383.0 349.0 0 0 0 0

MA1117.1_shift3 (RELB)
; dyads_m27 versus MA1117.1 (RELB); m=6/10; ncol2=11; w=9; offset=1; strand=D; shift=3; score=0.534198; ---gaATTCCCCks--- ; cor=; Ncor= a 0 0 0 796.0 1231.0 2833.0 210.0 90.0 144.0 92.0 146.0 79.0 796.0 711.0 0 0 0 c 0 0 0 414.0 561.0 127.0 107.0 103.0 2928.0 3098.0 3013.0 3035.0 628.0 921.0 0 0 0 g 0 0 0 1575.0 794.0 157.0 159.0 53.0 40.0 28.0 58.0 107.0 984.0 996.0 0 0 0 t 0 0 0 505.0 704.0 173.0 2814.0 3044.0 178.0 72.0 73.0 69.0 882.0 662.0 0 0 0

MA0101.1_shift0 (REL)
; dyads_m27 versus MA0101.1 (REL); m=7/10; ncol2=10; w=8; offset=-2; strand=D; shift=0; score=0.470165; sGGrmwTTCC------- ; cor=; Ncor= a 0.0 0.0 1.0 5.0 6.0 5.0 1.0 2.0 0.0 1.0 0 0 0 0 0 0 0 c 5.0 1.0 0.0 1.0 5.0 1.0 0.0 0.0 15.0 16.0 0 0 0 0 0 0 0 g 8.0 15.0 15.0 9.0 3.0 1.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0 t 4.0 1.0 1.0 2.0 3.0 10.0 16.0 15.0 2.0 0.0 0 0 0 0 0 0 0

MA0752.1_shift2 (ZNF410)
; dyads_m27 versus MA0752.1 (ZNF410); m=8/10; ncol2=17; w=10; offset=0; strand=D; shift=2; score=0.414761; --tmCATCCCATAATAh ; cor=; Ncor= a 0 0 661.0 1715.0 1.0 3985.0 50.0 69.0 12.0 0.0 3985.0 0.0 3987.0 3983.0 4.0 3930.0 1069.0 c 0 0 700.0 1872.0 3641.0 2.0 33.0 3949.0 3986.0 3986.0 5.0 9.0 8.0 2.0 6.0 17.0 1285.0 g 0 0 950.0 399.0 0.0 1.0 124.0 1.0 0.0 1.0 1.0 0.0 0.0 3.0 0.0 43.0 619.0 t 0 0 1677.0 2.0 370.0 4.0 3827.0 4.0 0.0 0.0 2.0 3987.0 0.0 1.0 3984.0 24.0 1015.0

MA0144.2_rc_shift5 (STAT3_rc)
; dyads_m27 versus MA0144.2_rc (STAT3_rc); m=9/10; ncol2=11; w=7; offset=3; strand=R; shift=5; score=0.40378; -----yTTCCmrGMAr- ; cor=; Ncor= a 0 0 0 0 0 4768.0 0.0 0.0 402.0 0.0 6472.0 13000.0 1029.0 15174.0 20912.0 7312.0 0 c 0 0 0 0 0 6579.0 0.0 0.0 18686.0 20046.0 11456.0 0.0 0.0 5850.0 0.0 3801.0 0 g 0 0 0 0 0 962.0 0.0 0.0 0.0 0.0 0.0 7780.0 19585.0 346.0 0.0 8571.0 0 t 0 0 0 0 0 9311.0 21620.0 21620.0 2532.0 1574.0 3692.0 840.0 1006.0 250.0 708.0 1936.0 0

MA0137.3_rc_shift5 (STAT1_rc)
; dyads_m27 versus MA0137.3_rc (STAT1_rc); m=10/10; ncol2=11; w=7; offset=3; strand=R; shift=5; score=0.40034; -----tTTCCyrGAAa- ; cor=; Ncor= a 0 0 0 0 0 714.0 0.0 0.0 167.0 0.0 253.0 1511.0 0.0 3513.0 3577.0 1747.0 0 c 0 0 0 0 0 725.0 0.0 9.0 3426.0 3466.0 1637.0 0.0 6.0 110.0 0.0 785.0 0 g 0 0 0 0 0 311.0 5.0 0.0 7.0 0.0 0.0 2009.0 3262.0 6.0 52.0 731.0 0 t 0 0 0 0 0 1879.0 3624.0 3620.0 29.0 163.0 1739.0 109.0 361.0 0.0 0.0 366.0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m49_shift1 ; 29 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m49_shift1 (oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49)
; oligos_7nt_mkv4_m49 (oligos_7nt_mkv4_m49oligos_7nt_mkv4_m49); m=0 (reference); ncol1=12; shift=1; ncol=14; -grACAACTGcys- ; Alignment reference a 0 44 82 223 1 217 206 8 1 0 16 48 45 0 c 0 47 41 1 218 4 5 209 5 3 135 62 65 0 g 0 79 83 2 2 2 13 6 4 220 30 56 70 0 t 0 56 20 0 5 3 2 3 216 3 45 60 46 0

MA1620.1_shift1 (Ptf1a(var.3))
; oligos_7nt_mkv4_m49 versus MA1620.1 (Ptf1a(var.3)); m=1/28; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.772437; -rmaCACCTGtky- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0

MA1641.1_shift1 (MYF5)
; oligos_7nt_mkv4_m49 versus MA1641.1 (MYF5); m=2/28; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.768054; -gvaCAGCTGtbc- ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0

MA1619.1_shift1 (Ptf1a(var.2))
; oligos_7nt_mkv4_m49 versus MA1619.1 (Ptf1a(var.2)); m=3/28; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.764855; -rmaCAGCTGtky- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA0500.2_rc_shift1 (MYOG_rc)
; oligos_7nt_mkv4_m49 versus MA0500.2_rc (MYOG_rc); m=4/28; ncol2=12; w=12; offset=0; strand=R; shift=1; score=0.738166; -sarCAGCTGyts- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA0100.3_shift2 (MYB)
; oligos_7nt_mkv4_m49 versus MA0100.3 (MYB); m=5/28; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.735314; --mbCAACTGhm-- ; cor=; Ncor= a 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 c 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 g 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 t 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0

MA0521.1_shift2 (Tcf12)
; oligos_7nt_mkv4_m49 versus MA0521.1 (Tcf12); m=6/28; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.72254; --rRCAGCTGswg- ; cor=; Ncor= a 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA1618.1_rc_shift0 (Ptf1a_rc)
; oligos_7nt_mkv4_m49 versus MA1618.1_rc (Ptf1a_rc); m=7/28; ncol2=13; w=12; offset=-1; strand=R; shift=0; score=0.703514; dmaaCATCTGtkh- ; cor=; Ncor= a 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 c 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 g 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 t 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0

MA0698.1_rc_shift1 (ZBTB18_rc)
; oligos_7nt_mkv4_m49 versus MA0698.1_rc (ZBTB18_rc); m=8/28; ncol2=13; w=12; offset=0; strand=R; shift=1; score=0.679082; -vmACATCTGGatd ; cor=; Ncor= a 0 4027.0 8140.0 13670.0 1.0 13670.0 297.0 6.0 206.0 8.0 60.0 13670.0 3319.0 3423.0 c 0 3876.0 5530.0 36.0 13670.0 94.0 278.0 13670.0 33.0 3.0 1899.0 5212.0 2535.0 2499.0 g 0 4042.0 177.0 314.0 1.0 15.0 1048.0 245.0 5.0 13670.0 13670.0 1937.0 753.0 4188.0 t 0 1725.0 210.0 48.0 3.0 14.0 13670.0 3.0 13670.0 21.0 3618.0 1177.0 7064.0 3561.0

MA1123.2_rc_shift1 (TWIST1_rc)
; oligos_7nt_mkv4_m49 versus MA1123.2_rc (TWIST1_rc); m=9/28; ncol2=13; w=12; offset=0; strand=R; shift=1; score=0.677679; -avaCATCTGGwwt ; cor=; Ncor= a 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 c 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 g 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 t 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0

MA0667.1_shift2 (MYF6)
; oligos_7nt_mkv4_m49 versus MA0667.1 (MYF6); m=10/28; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.66325; --AACArCTGTY-- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0

MA0499.2_rc_shift0 (MYOD1_rc)
; oligos_7nt_mkv4_m49 versus MA0499.2_rc (MYOD1_rc); m=11/28; ncol2=13; w=12; offset=-1; strand=R; shift=0; score=0.659253; rkrACAGGTGcwg- ; cor=; Ncor= a 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0

MA0522.3_shift2 (TCF3)
; oligos_7nt_mkv4_m49 versus MA0522.3 (TCF3); m=12/28; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.656178; --svCACCTGCss- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0

MA1621.1_shift0 (Rbpjl)
; oligos_7nt_mkv4_m49 versus MA1621.1 (Rbpjl); m=13/28; ncol2=14; w=12; offset=-1; strand=D; shift=0; score=0.655869; svmaCACCTGtsyc ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0

MA1648.1_shift2 (TCF12(var.2))
; oligos_7nt_mkv4_m49 versus MA1648.1 (TCF12(var.2)); m=14/28; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.654231; --ssCACCTGCys- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0

MA1631.1_shift1 (ASCL1(var.2))
; oligos_7nt_mkv4_m49 versus MA1631.1 (ASCL1(var.2)); m=15/28; ncol2=13; w=12; offset=0; strand=D; shift=1; score=0.649957; -cdgCACCTGCysc ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0

MA0103.3_shift2 (ZEB1)
; oligos_7nt_mkv4_m49 versus MA0103.3 (ZEB1); m=16/28; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.648539; --ssCACCTGsss- ; cor=; Ncor= a 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 c 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 g 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 t 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0

MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)
; oligos_7nt_mkv4_m49 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=17/28; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.638421; --rrCAGCTGbt-- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0

MA0816.1_shift2 (Ascl2)
; oligos_7nt_mkv4_m49 versus MA0816.1 (Ascl2); m=18/28; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.629763; --arCAGCTGyy-- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA1467.1_shift2 (ATOH1(var.2))
; oligos_7nt_mkv4_m49 versus MA1467.1 (ATOH1(var.2)); m=19/28; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.629727; --AACAGCTGTY-- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0

MA1485.1_rc_shift0 (FERD3L_rc)
; oligos_7nt_mkv4_m49 versus MA1485.1_rc (FERD3L_rc); m=20/28; ncol2=14; w=12; offset=-1; strand=R; shift=0; score=0.621543; GTrACAGCTGkyrC ; cor=; Ncor= a 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0

MA1100.2_shift2 (ASCL1)
; oligos_7nt_mkv4_m49 versus MA1100.2 (ASCL1); m=21/28; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.618761; --rrCAGCTGcy-- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA0665.1_shift2 (MSC)
; oligos_7nt_mkv4_m49 versus MA0665.1 (MSC); m=22/28; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.613399; --AACAGCTGTT-- ; cor=; Ncor= a 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0

MA0832.1_shift0 (Tcf21)
; oligos_7nt_mkv4_m49 versus MA0832.1 (Tcf21); m=23/28; ncol2=14; w=12; offset=-1; strand=D; shift=0; score=0.607151; ryAACAGCTGTTry ; cor=; Ncor= a 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0

MA0820.1_shift2 (FIGLA)
; oligos_7nt_mkv4_m49 versus MA0820.1 (FIGLA); m=24/28; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.601508; --wmCACCTGkw-- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0

MA1635.1_shift2 (BHLHE22(var.2))
; oligos_7nt_mkv4_m49 versus MA1635.1 (BHLHE22(var.2)); m=25/28; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.598514; --csCAGCTGsg-- ; cor=; Ncor= a 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA1558.1_rc_shift2 (SNAI1_rc)
; oligos_7nt_mkv4_m49 versus MA1558.1_rc (SNAI1_rc); m=26/28; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.596818; --yrCACCTGyh-- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0

MA1638.1_rc_shift2 (HAND2_rc)
; oligos_7nt_mkv4_m49 versus MA1638.1_rc (HAND2_rc); m=27/28; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.585854; --rvCATCTGkt-- ; cor=; Ncor= a 0 0 7783.0 8498.0 49.0 27962.0 23.0 85.0 4.0 70.0 3155.0 7120.0 0 0 c 0 0 6108.0 8878.0 29851.0 31.0 38.0 30144.0 647.0 132.0 6994.0 7463.0 0 0 g 0 0 10227.0 7690.0 149.0 2276.0 30.0 42.0 410.0 30062.0 11298.0 5564.0 0 0 t 0 0 6165.0 5217.0 234.0 14.0 30192.0 12.0 29222.0 19.0 8836.0 10136.0 0 0

MA0691.1_shift2 (TFAP4)
; oligos_7nt_mkv4_m49 versus MA0691.1 (TFAP4); m=28/28; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.585738; --AwCAGCTGwT-- ; cor=; Ncor= a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m6_shift3 ; 16 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m6_shift3 (oligos_7nt_mkv4_m6oligos_7nt_mkv4_m6)
; oligos_7nt_mkv4_m6 (oligos_7nt_mkv4_m6oligos_7nt_mkv4_m6); m=0 (reference); ncol1=14; shift=3; ncol=17; ---ccCCCCCmCCCCcc ; Alignment reference a 0 0 0 77 94 37 15 6 11 13 336 5 7 4 19 110 103 c 0 0 0 473 419 606 689 693 694 698 326 698 693 691 676 459 409 g 0 0 0 79 98 44 5 7 7 1 28 5 8 5 6 76 119 t 0 0 0 86 104 28 6 9 3 3 25 7 7 15 14 70 84

MA0753.2_shift4 (ZNF740)
; oligos_7nt_mkv4_m6 versus MA0753.2 (ZNF740); m=1/15; ncol2=13; w=13; offset=1; strand=D; shift=4; score=0.767137; ----cyrCCCCCCCCAc ; cor=; Ncor= a 0 0 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 c 0 0 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 g 0 0 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 t 0 0 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0

MA0039.4_shift4 (KLF4)
; oligos_7nt_mkv4_m6 versus MA0039.4 (KLF4); m=2/15; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.741803; ----ssCCCCACCChs- ; cor=; Ncor= a 0 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 c 0 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 g 0 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 t 0 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0

MA1653.1_shift4 (ZNF148)
; oligos_7nt_mkv4_m6 versus MA1653.1 (ZNF148); m=3/15; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.736328; ----ysCCCCTCCCcc- ; cor=; Ncor= a 0 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0

MA1522.1_shift4 (MAZ)
; oligos_7nt_mkv4_m6 versus MA1522.1 (MAZ); m=4/15; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.632557; ----ssCCCCTCCcc-- ; cor=; Ncor= a 0 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 c 0 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 g 0 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 t 0 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0

MA1513.1_shift5 (KLF15)
; oligos_7nt_mkv4_m6 versus MA1513.1 (KLF15); m=5/15; ncol2=11; w=11; offset=2; strand=D; shift=5; score=0.627585; -----scCCCGCCCcs- ; cor=; Ncor= a 0 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 c 0 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 g 0 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 t 0 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0

MA1564.1_shift5 (SP9)
; oligos_7nt_mkv4_m6 versus MA1564.1 (SP9); m=6/15; ncol2=12; w=12; offset=2; strand=D; shift=5; score=0.624182; -----rcCmCGCCCmcy ; cor=; Ncor= a 0 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 c 0 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 g 0 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 t 0 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0

MA0741.1_shift5 (KLF16)
; oligos_7nt_mkv4_m6 versus MA0741.1 (KLF16); m=7/15; ncol2=11; w=11; offset=2; strand=D; shift=5; score=0.607921; -----gmCMCgCCCMC- ; cor=; Ncor= a 0 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 c 0 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 g 0 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 t 0 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0

MA0599.1_shift5 (KLF5)
; oligos_7nt_mkv4_m6 versus MA0599.1 (KLF5); m=8/15; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.604495; -----gCCMCrCCCh-- ; cor=; Ncor= a 0 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0

MA1515.1_shift4 (KLF2)
; oligos_7nt_mkv4_m6 versus MA1515.1 (KLF2); m=9/15; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.583455; ----srCCmCrCCCw-- ; cor=; Ncor= a 0 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 c 0 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 g 0 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 t 0 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0

MA1578.1_shift7 (VEZF1)
; oligos_7nt_mkv4_m6 versus MA1578.1 (VEZF1); m=10/15; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.574067; -------CCCCCCmytw ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0

MA1511.1_shift5 (KLF10)
; oligos_7nt_mkv4_m6 versus MA1511.1 (KLF10); m=11/15; ncol2=11; w=11; offset=2; strand=D; shift=5; score=0.559866; -----gmCACrCCCmy- ; cor=; Ncor= a 0 0 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 c 0 0 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 g 0 0 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 t 0 0 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0

MA1630.1_rc_shift2 (Znf281_rc)
; oligos_7nt_mkv4_m6 versus MA1630.1_rc (Znf281_rc); m=12/15; ncol2=11; w=10; offset=-1; strand=R; shift=2; score=0.53861; --CcTCCCCCAcc---- ; cor=; Ncor= a 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 0 0 0 0 c 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 0 0 0 0 g 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 0 0 0 0 t 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0 0 0 0 0

MA1627.1_shift0 (Wt1)
; oligos_7nt_mkv4_m6 versus MA1627.1 (Wt1); m=13/15; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.500987; cycCTCCCCCACmc--- ; cor=; Ncor= a 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 1675.0 520.0 0 0 0 c 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 1350.0 2023.0 0 0 0 g 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 928.0 1038.0 0 0 0 t 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0 738.0 1110.0 0 0 0

MA0747.1_shift1 (SP8)
; oligos_7nt_mkv4_m6 versus MA0747.1 (SP8); m=14/15; ncol2=12; w=10; offset=-2; strand=D; shift=1; score=0.455019; -rmCACgCCCmCy---- ; cor=; Ncor= a 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 0 0 0 c 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 0 0 0 g 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 0 0 0 t 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0 0 0 0

MA1512.1_shift1 (KLF11)
; oligos_7nt_mkv4_m6 versus MA1512.1 (KLF11); m=15/15; ncol2=11; w=9; offset=-2; strand=D; shift=1; score=0.414644; -gcCACGCCCmC----- ; cor=; Ncor= a 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 0 0 c 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 0 0 g 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 0 0 t 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m24_shift3 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m24_shift3 (oligos_8nt_mkv5_m24oligos_8nt_mkv5_m24)
; oligos_8nt_mkv5_m24 (oligos_8nt_mkv5_m24oligos_8nt_mkv5_m24); m=0 (reference); ncol1=13; shift=3; ncol=16; ---ccCCCAACCCCmc ; Alignment reference a 0 0 0 57 52 6 4 7 179 196 6 4 5 3 72 44 c 0 0 0 90 102 228 242 229 58 26 233 239 235 235 81 102 g 0 0 0 46 35 10 1 1 4 12 4 1 3 3 52 54 t 0 0 0 55 59 4 1 11 7 14 5 4 5 7 43 48

MA0039.4_shift3 (KLF4)
; oligos_8nt_mkv5_m24 versus MA0039.4 (KLF4); m=1/5; ncol2=12; w=12; offset=0; strand=D; shift=3; score= 0.7662; ---ssCCCCACCChs- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0

MA1653.1_shift3 (ZNF148)
; oligos_8nt_mkv5_m24 versus MA1653.1 (ZNF148); m=2/5; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.686672; ---ysCCCCTCCCcc- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0

MA1522.1_shift3 (MAZ)
; oligos_8nt_mkv5_m24 versus MA1522.1 (MAZ); m=3/5; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.595713; ---ssCCCCTCCcc-- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0

MA0599.1_shift4 (KLF5)
; oligos_8nt_mkv5_m24 versus MA0599.1 (KLF5); m=4/5; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.593249; ----gCCMCrCCCh-- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0

MA1656.1_shift0 (ZNF449)
; oligos_8nt_mkv5_m24 versus MA1656.1 (ZNF449); m=5/5; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.497458; cvaAGCCCAACcas-- ; cor=; Ncor= a 1809.0 2104.0 4135.0 6239.0 108.0 139.0 64.0 68.0 6851.0 6620.0 184.0 1143.0 2595.0 1670.0 0 0 c 2716.0 2320.0 1759.0 582.0 92.0 7088.0 7540.0 7479.0 300.0 96.0 7244.0 5029.0 1875.0 2195.0 0 0 g 1566.0 1921.0 1463.0 224.0 7368.0 322.0 28.0 54.0 182.0 829.0 167.0 473.0 1585.0 2237.0 0 0 t 1569.0 1315.0 303.0 615.0 92.0 111.0 28.0 59.0 327.0 115.0 65.0 1015.0 1605.0 1558.0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m29_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m29_shift0 (oligos_7nt_mkv4_m29oligos_7nt_mkv4_m29)
; oligos_7nt_mkv4_m29 (oligos_7nt_mkv4_m29oligos_7nt_mkv4_m29); m=0 (reference); ncol1=12; shift=0; ncol=12; stGACCACAGsy ; Alignment reference a 41 39 8 201 2 3 196 2 191 4 37 37 c 68 33 0 0 200 175 1 198 3 6 60 67 g 76 49 189 1 1 17 5 2 9 191 73 42 t 19 83 7 2 1 9 2 2 1 3 34 58

MA0002.2_rc_shift1 (RUNX1_rc)
; oligos_7nt_mkv4_m29 versus MA0002.2_rc (RUNX1_rc); m=1/2; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.764577; -waaCCACAram ; cor=; Ncor= a 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 c 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 g 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 t 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0

MA0695.1_shift0 (ZBTB7C)
; oligos_7nt_mkv4_m29 versus MA0695.1 (ZBTB7C); m=2/2; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.731106; rcgACCACCgam ; cor=; Ncor= a 272.0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 253.0 1018.0 333.0 c 118.0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 138.0 444.0 315.0 g 463.0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 527.0 251.0 196.0 t 164.0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 100.0 419.0 174.0

One-to-n matrix alignment; reference matrix: dyads_m16_shift2 ; 22 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m16_shift2 (dyads_m16dyads_m16)
; dyads_m16 (dyads_m16dyads_m16); m=0 (reference); ncol1=15; shift=2; ncol=17; --cyGCCCCTCCCCCcs ; Alignment reference a 0 0 25 41 16 1 3 1 4 7 0 2 1 4 7 52 25 c 0 0 124 76 19 212 197 212 206 12 212 209 206 204 173 78 91 g 0 0 47 46 169 2 3 2 1 38 5 4 4 5 27 40 58 t 0 0 22 55 14 3 15 3 7 161 1 3 7 5 11 48 44

MA1653.1_shift3 (ZNF148)
; dyads_m16 versus MA1653.1 (ZNF148); m=1/21; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.763648; ---ysCCCCTCCCcc-- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0

MA1522.1_shift3 (MAZ)
; dyads_m16 versus MA1522.1 (MAZ); m=2/21; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.679027; ---ssCCCCTCCcc--- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0

MA0516.2_shift0 (SP2)
; dyads_m16 versus MA0516.2 (SP2); m=3/21; ncol2=17; w=15; offset=-2; strand=D; shift=0; score=0.673017; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0

MA0753.2_shift2 (ZNF740)
; dyads_m16 versus MA0753.2 (ZNF740); m=4/21; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.671586; --cyrCCCCCCCCAc-- ; cor=; Ncor= a 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 0 c 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 0 g 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 0 t 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0 0

MA0746.2_shift3 (SP3)
; dyads_m16 versus MA0746.2 (SP3); m=5/21; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.663955; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0

MA0039.4_shift3 (KLF4)
; dyads_m16 versus MA0039.4 (KLF4); m=6/21; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.647629; ---ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0

MA0685.1_shift1 (SP4)
; dyads_m16 versus MA0685.1 (SP4); m=7/21; ncol2=17; w=15; offset=-1; strand=D; shift=1; score=0.633848; -ywrGCCACGCCCmCty ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0

MA0079.4_shift1 (SP1)
; dyads_m16 versus MA0079.4 (SP1); m=8/21; ncol2=15; w=14; offset=-1; strand=D; shift=1; score=0.626496; -ywrRCCACGCCCmCh- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0

MA1513.1_shift4 (KLF15)
; dyads_m16 versus MA1513.1 (KLF15); m=9/21; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.613354; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0

MA1564.1_shift4 (SP9)
; dyads_m16 versus MA1564.1 (SP9); m=10/21; ncol2=12; w=12; offset=2; strand=D; shift=4; score=0.611739; ----rcCmCGCCCmcy- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0

MA0741.1_shift4 (KLF16)
; dyads_m16 versus MA0741.1 (KLF16); m=11/21; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.607503; ----gmCMCgCCCMC-- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0

MA0599.1_shift4 (KLF5)
; dyads_m16 versus MA0599.1 (KLF5); m=12/21; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.604125; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA0747.1_shift4 (SP8)
; dyads_m16 versus MA0747.1 (SP8); m=13/21; ncol2=12; w=12; offset=2; strand=D; shift=4; score= 0.6036; ----rmCACgCCCmCy- ; cor=; Ncor= a 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 c 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 g 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 t 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0

MA1627.1_shift5 (Wt1)
; dyads_m16 versus MA1627.1 (Wt1); m=14/21; ncol2=14; w=12; offset=3; strand=D; shift=5; score=0.599562; -----cycCTCCCCCAC ; cor=; Ncor= a 0 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 c 0 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 g 0 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 t 0 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0

MA0528.2_rc_shift4 (ZNF263_rc)
; dyads_m16 versus MA0528.2_rc (ZNF263_rc); m=15/21; ncol2=12; w=12; offset=2; strand=R; shift=4; score=0.58836; ----csTCCTCCCcsc- ; cor=; Ncor= a 0 0 0 0 11103.0 6566.0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 8247.0 12535.0 9733.0 0 c 0 0 0 0 25115.0 24825.0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 28912.0 17883.0 20283.0 0 g 0 0 0 0 11689.0 15413.0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 6183.0 14909.0 13040.0 0 t 0 0 0 0 8436.0 9539.0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 13001.0 11016.0 13287.0 0

MA1630.1_rc_shift7 (Znf281_rc)
; dyads_m16 versus MA1630.1_rc (Znf281_rc); m=16/21; ncol2=11; w=10; offset=5; strand=R; shift=7; score=0.565685; -------CcTCCCCCAc ; cor=; Ncor= a 0 0 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 c 0 0 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 g 0 0 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 t 0 0 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0

MA1515.1_shift3 (KLF2)
; dyads_m16 versus MA1515.1 (KLF2); m=17/21; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.547359; ---srCCmCrCCCw--- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0

MA1511.1_shift4 (KLF10)
; dyads_m16 versus MA1511.1 (KLF10); m=18/21; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.532879; ----gmCACrCCCmy-- ; cor=; Ncor= a 0 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 c 0 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 g 0 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 t 0 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0

MA1512.1_shift4 (KLF11)
; dyads_m16 versus MA1512.1 (KLF11); m=19/21; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.532319; ----gcCACGCCCmC-- ; cor=; Ncor= a 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 c 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 g 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 t 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0

MA1578.1_shift7 (VEZF1)
; dyads_m16 versus MA1578.1 (VEZF1); m=20/21; ncol2=10; w=10; offset=5; strand=D; shift=7; score=0.49436; -------CCCCCCmytw ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0

MA0057.1_rc_shift2 (MZF1(var.2)_rc)
; dyads_m16 versus MA0057.1_rc (MZF1(var.2)_rc); m=21/21; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.484357; --yymCCCMTmv----- ; cor=; Ncor= a 0 0 2.0 2.0 4.0 2.0 0.0 1.0 5.0 0.0 7.0 4.0 0 0 0 0 0 c 0 0 4.0 4.0 8.0 14.0 14.0 15.0 11.0 0.0 7.0 7.0 0 0 0 0 0 g 0 0 2.0 0.0 1.0 0.0 2.0 0.0 0.0 1.0 0.0 4.0 0 0 0 0 0 t 0 0 8.0 10.0 3.0 0.0 0.0 0.0 0.0 15.0 2.0 1.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_7nt_m20_shift1 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m20_shift1 (local_words_7nt_m20local_words_7nt_m20)
; local_words_7nt_m20 (local_words_7nt_m20local_words_7nt_m20); m=0 (reference); ncol1=17; shift=1; ncol=18; -ssccGCAGCTGCTGCyg ; Alignment reference a 0 109 100 45 111 31 0 459 1 1 12 0 1 13 20 28 76 80 c 0 154 122 276 221 27 486 16 5 482 11 1 466 29 59 356 161 112 g 0 146 192 100 67 416 0 4 481 3 2 485 5 21 394 41 102 183 t 0 78 73 66 88 13 1 8 0 1 462 1 15 424 14 62 148 112

MA1529.1_rc_shift0 (NHLH2_rc)
; local_words_7nt_m20 versus MA1529.1_rc (NHLH2_rc); m=1/20; ncol2=18; w=17; offset=-1; strand=R; shift=0; score=0.763546; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA0500.2_shift3 (MYOG)
; local_words_7nt_m20 versus MA0500.2 (MYOG); m=2/20; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.622719; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_7nt_m20 versus MA1485.1_rc (FERD3L_rc); m=3/20; ncol2=14; w=14; offset=1; strand=R; shift=2; score=0.598432; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; local_words_7nt_m20 versus MA1631.1 (ASCL1(var.2)); m=4/20; ncol2=13; w=13; offset=2; strand=D; shift=3; score=0.572776; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; local_words_7nt_m20 versus MA0830.2_rc (TCF4_rc); m=5/20; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.563836; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_7nt_m20 versus MA0521.1_rc (Tcf12_rc); m=6/20; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.558763; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; local_words_7nt_m20 versus MA0048.2 (NHLH1); m=7/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.552395; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_7nt_m20 versus MA0816.1_rc (Ascl2_rc); m=8/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.548101; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_7nt_m20 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=9/20; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.535845; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; local_words_7nt_m20 versus MA1100.2_rc (ASCL1_rc); m=10/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.532067; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1641.1_shift3 (MYF5)
; local_words_7nt_m20 versus MA1641.1 (MYF5); m=11/20; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.524636; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_7nt_m20 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=12/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.516868; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; local_words_7nt_m20 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=13/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.49446; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; local_words_7nt_m20 versus MA1648.1 (TCF12(var.2)); m=14/20; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.474165; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift4 (TCF3)
; local_words_7nt_m20 versus MA0522.3 (TCF3); m=15/20; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.466379; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; local_words_7nt_m20 versus MA0691.1_rc (TFAP4_rc); m=16/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.450569; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; local_words_7nt_m20 versus MA1467.1_rc (ATOH1(var.2)_rc); m=17/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.448207; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0665.1_shift4 (MSC)
; local_words_7nt_m20 versus MA0665.1 (MSC); m=18/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.431209; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA1558.1_rc_shift4 (SNAI1_rc)
; local_words_7nt_m20 versus MA1558.1_rc (SNAI1_rc); m=19/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.417171; ----yrCACCTGyh---- ; cor=; Ncor= a 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0

MA1559.1_rc_shift4 (SNAI3_rc)
; local_words_7nt_m20 versus MA1559.1_rc (SNAI3_rc); m=20/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.413416; ----trCACCTGyt---- ; cor=; Ncor= a 0 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 c 0 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 g 0 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 t 0 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_7nt_m9_shift0 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m9_shift0 (local_words_7nt_m9local_words_7nt_m9)
; local_words_7nt_m9 (local_words_7nt_m9local_words_7nt_m9); m=0 (reference); ncol1=17; shift=0; ncol=18; crGCAGCAGCTGCggss- ; Alignment reference a 113 150 63 14 429 16 1 467 1 0 8 1 13 90 66 75 80 0 c 186 102 42 399 21 5 491 2 3 487 4 0 421 69 101 193 146 0 g 113 163 360 60 30 471 1 11 488 5 17 492 28 223 281 124 158 0 t 81 78 28 20 13 1 0 13 1 1 464 0 31 111 45 101 109 0

MA1529.1_shift0 (NHLH2)
; local_words_7nt_m9 versus MA1529.1 (NHLH2); m=1/20; ncol2=18; w=17; offset=0; strand=D; shift=0; score=0.762622; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0500.2_rc_shift3 (MYOG_rc)
; local_words_7nt_m9 versus MA0500.2_rc (MYOG_rc); m=2/20; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.622634; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1485.1_shift2 (FERD3L)
; local_words_7nt_m9 versus MA1485.1 (FERD3L); m=3/20; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.597968; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; local_words_7nt_m9 versus MA1631.1_rc (ASCL1(var.2)_rc); m=4/20; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.572698; --gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0

MA0830.2_shift3 (TCF4)
; local_words_7nt_m9 versus MA0830.2 (TCF4); m=5/20; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.563765; ---cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA0521.1_shift4 (Tcf12)
; local_words_7nt_m9 versus MA0521.1 (Tcf12); m=6/20; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.558953; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_7nt_m9 versus MA0048.2_rc (NHLH1_rc); m=7/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.552266; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA0816.1_shift4 (Ascl2)
; local_words_7nt_m9 versus MA0816.1 (Ascl2); m=8/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.548132; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; local_words_7nt_m9 versus MA1619.1 (Ptf1a(var.2)); m=9/20; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.535777; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_7nt_m9 versus MA1100.2 (ASCL1); m=10/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.532161; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; local_words_7nt_m9 versus MA1641.1_rc (MYF5_rc); m=11/20; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.524604; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; local_words_7nt_m9 versus MA1635.1 (BHLHE22(var.2)); m=12/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.516986; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_7nt_m9 versus MA1472.1 (BHLHA15(var.2)); m=13/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.494529; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; local_words_7nt_m9 versus MA1648.1_rc (TCF12(var.2)_rc); m=14/20; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.47407; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; local_words_7nt_m9 versus MA0522.3_rc (TCF3_rc); m=15/20; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.466262; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; local_words_7nt_m9 versus MA0691.1 (TFAP4); m=16/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.450519; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; local_words_7nt_m9 versus MA1467.1 (ATOH1(var.2)); m=17/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.448444; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; local_words_7nt_m9 versus MA0665.1_rc (MSC_rc); m=18/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.431199; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA1558.1_shift4 (SNAI1)
; local_words_7nt_m9 versus MA1558.1 (SNAI1); m=19/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.417154; ----drCAGGTGyr---- ; cor=; Ncor= a 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 0 c 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 0 g 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 0 t 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0 0

MA1559.1_shift4 (SNAI3)
; local_words_7nt_m9 versus MA1559.1 (SNAI3); m=20/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.413583; ----arCAGGTGya---- ; cor=; Ncor= a 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m1_shift0 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m1_shift0 (positions_7nt_m1positions_7nt_m1)
; positions_7nt_m1 (positions_7nt_m1positions_7nt_m1); m=0 (reference); ncol1=18; shift=0; ncol=18; ssgcaGCAGCTGCtgcss ; Alignment reference a 267 322 298 153 908 63 2 1311 3 1 37 1 16 175 166 176 253 265 c 466 374 327 781 90 24 1358 11 19 1340 6 3 1261 191 263 563 414 365 g 367 415 563 263 191 1261 3 6 1341 20 11 1358 24 90 782 326 375 467 t 264 253 176 167 175 16 1 36 1 3 1310 2 63 908 153 299 322 267

MA1529.1_rc_shift0 (NHLH2_rc)
; positions_7nt_m1 versus MA1529.1_rc (NHLH2_rc); m=1/19; ncol2=18; w=18; offset=0; strand=R; shift=0; score=0.76031; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA0500.2_shift3 (MYOG)
; positions_7nt_m1 versus MA0500.2 (MYOG); m=2/19; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.611164; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA0832.1_shift2 (Tcf21)
; positions_7nt_m1 versus MA0832.1 (Tcf21); m=3/19; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.575296; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; positions_7nt_m1 versus MA1631.1_rc (ASCL1(var.2)_rc); m=4/19; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.563971; --gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; positions_7nt_m1 versus MA1485.1_rc (FERD3L_rc); m=5/19; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.552539; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; positions_7nt_m1 versus MA0830.2_rc (TCF4_rc); m=6/19; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.550201; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; positions_7nt_m1 versus MA0816.1_rc (Ascl2_rc); m=7/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.532394; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA0521.1_shift4 (Tcf12)
; positions_7nt_m1 versus MA0521.1 (Tcf12); m=8/19; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.527158; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; positions_7nt_m1 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=9/19; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.516073; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1641.1_shift3 (MYF5)
; positions_7nt_m1 versus MA1641.1 (MYF5); m=10/19; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.510073; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; positions_7nt_m1 versus MA1100.2_rc (ASCL1_rc); m=11/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.510039; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; positions_7nt_m1 versus MA0048.2_rc (NHLH1_rc); m=12/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.507606; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; positions_7nt_m1 versus MA1635.1 (BHLHE22(var.2)); m=13/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.487875; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; positions_7nt_m1 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=14/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.472465; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; positions_7nt_m1 versus MA1648.1_rc (TCF12(var.2)_rc); m=15/19; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.449842; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; positions_7nt_m1 versus MA0522.3_rc (TCF3_rc); m=16/19; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.443477; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; positions_7nt_m1 versus MA0691.1_rc (TFAP4_rc); m=17/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.440206; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; positions_7nt_m1 versus MA1467.1_rc (ATOH1(var.2)_rc); m=18/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.428406; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; positions_7nt_m1 versus MA0665.1_rc (MSC_rc); m=19/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.423763; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m2_shift1 ; 44 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m2_shift1 (oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2)
; oligos_8nt_mkv5_m2 (oligos_8nt_mkv5_m2oligos_8nt_mkv5_m2); m=0 (reference); ncol1=15; shift=1; ncol=16; -srrGAACAGSTGtsc ; Alignment reference a 0 67 79 80 16 292 293 1 310 6 6 1 1 19 35 76 c 0 89 74 29 31 5 1 309 0 3 85 0 1 43 96 97 g 0 91 108 148 244 13 13 1 1 299 212 0 308 42 109 75 t 0 64 50 54 20 1 4 0 0 3 8 310 1 207 71 63

MA0744.2_shift0 (SCRT2)
; oligos_8nt_mkv5_m2 versus MA0744.2 (SCRT2); m=1/43; ncol2=16; w=15; offset=-1; strand=D; shift=0; score=0.758278; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0

MA0743.2_shift0 (SCRT1)
; oligos_8nt_mkv5_m2 versus MA0743.2 (SCRT1); m=2/43; ncol2=16; w=15; offset=-1; strand=D; shift=0; score=0.747429; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0

MA0499.2_rc_shift3 (MYOD1_rc)
; oligos_8nt_mkv5_m2 versus MA0499.2_rc (MYOD1_rc); m=3/43; ncol2=13; w=13; offset=2; strand=R; shift=3; score=0.731857; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; oligos_8nt_mkv5_m2 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=4/43; ncol2=12; w=12; offset=3; strand=R; shift=4; score=0.71853; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0

MA0745.2_rc_shift3 (SNAI2_rc)
; oligos_8nt_mkv5_m2 versus MA0745.2_rc (SNAI2_rc); m=5/43; ncol2=13; w=13; offset=2; strand=R; shift=3; score=0.716972; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0

MA1621.1_rc_shift3 (Rbpjl_rc)
; oligos_8nt_mkv5_m2 versus MA1621.1_rc (Rbpjl_rc); m=6/43; ncol2=14; w=13; offset=2; strand=R; shift=3; score=0.714283; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0

MA0832.1_shift3 (Tcf21)
; oligos_8nt_mkv5_m2 versus MA0832.1 (Tcf21); m=7/43; ncol2=14; w=13; offset=2; strand=D; shift=3; score=0.665793; ---ryAACAGCTGTTr ; cor=; Ncor= a 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 c 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 g 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 t 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0

MA1641.1_shift4 (MYF5)
; oligos_8nt_mkv5_m2 versus MA1641.1 (MYF5); m=8/43; ncol2=12; w=12; offset=3; strand=D; shift=4; score=0.661124; ----gvaCAGCTGtbc ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0

MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)
; oligos_8nt_mkv5_m2 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=9/43; ncol2=12; w=12; offset=3; strand=R; shift=4; score=0.652374; ----rmaCAGCTGtky ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0

MA0830.2_rc_shift3 (TCF4_rc)
; oligos_8nt_mkv5_m2 versus MA0830.2_rc (TCF4_rc); m=10/43; ncol2=13; w=13; offset=2; strand=R; shift=3; score=0.632003; ---ssggCAGGTGccg ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0

MA1631.1_rc_shift3 (ASCL1(var.2)_rc)
; oligos_8nt_mkv5_m2 versus MA1631.1_rc (ASCL1(var.2)_rc); m=11/43; ncol2=13; w=13; offset=2; strand=R; shift=3; score=0.625481; ---gsrGCAGGTGchg ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0

MA0521.1_shift5 (Tcf12)
; oligos_8nt_mkv5_m2 versus MA0521.1 (Tcf12); m=12/43; ncol2=11; w=11; offset=4; strand=D; shift=5; score=0.620584; -----rRCAGCTGswg ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0

MA1618.1_rc_shift3 (Ptf1a_rc)
; oligos_8nt_mkv5_m2 versus MA1618.1_rc (Ptf1a_rc); m=13/43; ncol2=13; w=13; offset=2; strand=R; shift=3; score=0.613199; ---dmaaCATCTGtkh ; cor=; Ncor= a 0 0 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 c 0 0 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 g 0 0 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 t 0 0 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0

MA1105.2_shift3 (GRHL2)
; oligos_8nt_mkv5_m2 versus MA1105.2 (GRHL2); m=14/43; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.608593; ---arAACAGGTTtk- ; cor=; Ncor= a 0 0 0 14483.0 17842.0 36467.0 37065.0 503.0 34024.0 2824.0 642.0 1878.0 1752.0 7061.0 8868.0 0 c 0 0 0 9741.0 6996.0 1147.0 712.0 40446.0 1543.0 581.0 987.0 2331.0 2000.0 9341.0 8528.0 0 g 0 0 0 9161.0 10776.0 2646.0 2841.0 609.0 485.0 37226.0 39624.0 748.0 1220.0 7961.0 10536.0 0 t 0 0 0 8493.0 6264.0 1618.0 1260.0 320.0 5826.0 1247.0 625.0 36921.0 36906.0 17515.0 13946.0 0

MA1485.1_rc_shift3 (FERD3L_rc)
; oligos_8nt_mkv5_m2 versus MA1485.1_rc (FERD3L_rc); m=15/43; ncol2=14; w=13; offset=2; strand=R; shift=3; score=0.603182; ---GTrACAGCTGkyr ; cor=; Ncor= a 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 c 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 g 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 t 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0

MA0665.1_rc_shift5 (MSC_rc)
; oligos_8nt_mkv5_m2 versus MA0665.1_rc (MSC_rc); m=16/43; ncol2=10; w=10; offset=4; strand=R; shift=5; score=0.600212; -----AACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0

MA0500.2_rc_shift4 (MYOG_rc)
; oligos_8nt_mkv5_m2 versus MA0500.2_rc (MYOG_rc); m=17/43; ncol2=12; w=12; offset=3; strand=R; shift=4; score=0.598997; ----sarCAGCTGyts ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0

MA0820.1_rc_shift5 (FIGLA_rc)
; oligos_8nt_mkv5_m2 versus MA0820.1_rc (FIGLA_rc); m=18/43; ncol2=10; w=10; offset=4; strand=R; shift=5; score=0.598025; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0

MA0667.1_rc_shift5 (MYF6_rc)
; oligos_8nt_mkv5_m2 versus MA0667.1_rc (MYF6_rc); m=19/43; ncol2=10; w=10; offset=4; strand=R; shift=5; score=0.587246; -----RACAGyTGTT- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 c 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 g 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 t 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0

MA1467.1_shift5 (ATOH1(var.2))
; oligos_8nt_mkv5_m2 versus MA1467.1 (ATOH1(var.2)); m=20/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.583043; -----AACAGCTGTY- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0

MA1559.1_shift5 (SNAI3)
; oligos_8nt_mkv5_m2 versus MA1559.1 (SNAI3); m=21/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.581015; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0

MA0091.1_shift3 (TAL1::TCF3)
; oligos_8nt_mkv5_m2 versus MA0091.1 (TAL1::TCF3); m=22/43; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.570333; ---mgAmCAKMTGkT- ; cor=; Ncor= a 0 0 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 c 0 0 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 g 0 0 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 t 0 0 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0

MA0103.3_rc_shift4 (ZEB1_rc)
; oligos_8nt_mkv5_m2 versus MA0103.3_rc (ZEB1_rc); m=23/43; ncol2=11; w=11; offset=3; strand=R; shift=4; score=0.567908; ----sssCAGGTGss- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0

MA1655.1_shift2 (ZNF341)
; oligos_8nt_mkv5_m2 versus MA1655.1 (ZNF341); m=24/43; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.56259; --grGAACAGCcas-- ; cor=; Ncor= a 0 0 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 c 0 0 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 g 0 0 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 t 0 0 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0

MA1472.1_shift5 (BHLHA15(var.2))
; oligos_8nt_mkv5_m2 versus MA1472.1 (BHLHA15(var.2)); m=25/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.558814; -----avCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0

MA0691.1_shift5 (TFAP4)
; oligos_8nt_mkv5_m2 versus MA0691.1 (TFAP4); m=26/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.553608; -----AwCAGCTGwT- ; cor=; Ncor= a 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 c 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 g 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 t 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0

MA1558.1_shift5 (SNAI1)
; oligos_8nt_mkv5_m2 versus MA1558.1 (SNAI1); m=27/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.550348; -----drCAGGTGyr- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0

MA1648.1_rc_shift4 (TCF12(var.2)_rc)
; oligos_8nt_mkv5_m2 versus MA1648.1_rc (TCF12(var.2)_rc); m=28/43; ncol2=11; w=11; offset=3; strand=R; shift=4; score=0.527954; ----srGCAGGTGss- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0

MA1109.1_shift4 (NEUROD1)
; oligos_8nt_mkv5_m2 versus MA1109.1 (NEUROD1); m=29/43; ncol2=13; w=12; offset=3; strand=D; shift=4; score=0.525974; ----graCAGATGGyr ; cor=; Ncor= a 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 c 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 g 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 t 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0

MA0816.1_shift5 (Ascl2)
; oligos_8nt_mkv5_m2 versus MA0816.1 (Ascl2); m=30/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.525057; -----arCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 c 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 g 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 t 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0

MA0522.3_rc_shift4 (TCF3_rc)
; oligos_8nt_mkv5_m2 versus MA0522.3_rc (TCF3_rc); m=31/43; ncol2=11; w=11; offset=3; strand=R; shift=4; score=0.524916; ----ssGCAGGTGbs- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0

MA0819.1_shift5 (CLOCK)
; oligos_8nt_mkv5_m2 versus MA0819.1 (CLOCK); m=32/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.514666; -----aACACGTGty- ; cor=; Ncor= a 0 0 0 0 0 226.0 429.0 11.0 429.0 16.0 40.0 3.0 0.0 1.0 89.0 0 c 0 0 0 0 0 35.0 85.0 429.0 5.0 429.0 0.0 5.0 3.0 152.0 128.0 0 g 0 0 0 0 0 93.0 89.0 2.0 15.0 0.0 429.0 5.0 429.0 110.0 39.0 0 t 0 0 0 0 0 75.0 13.0 2.0 0.0 28.0 0.0 429.0 9.0 429.0 174.0 0

MA1570.1_shift5 (TFAP4(var.2))
; oligos_8nt_mkv5_m2 versus MA1570.1 (TFAP4(var.2)); m=33/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.512664; -----ahCAyrTGkt- ; cor=; Ncor= a 0 0 0 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 c 0 0 0 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 g 0 0 0 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 t 0 0 0 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0

MA1100.2_shift5 (ASCL1)
; oligos_8nt_mkv5_m2 versus MA1100.2 (ASCL1); m=34/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.50937; -----rrCAGCTGcy- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0

MA1635.1_shift5 (BHLHE22(var.2))
; oligos_8nt_mkv5_m2 versus MA1635.1 (BHLHE22(var.2)); m=35/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.49046; -----csCAGCTGsg- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 c 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 g 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 t 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0

MA1638.1_shift5 (HAND2)
; oligos_8nt_mkv5_m2 versus MA1638.1 (HAND2); m=36/43; ncol2=10; w=10; offset=4; strand=D; shift=5; score=0.476689; -----amCAGATGby- ; cor=; Ncor= a 0 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 c 0 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 g 0 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 t 0 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0

MA0807.1_shift8 (TBX5)
; oligos_8nt_mkv5_m2 versus MA0807.1 (TBX5); m=37/43; ncol2=8; w=8; offset=7; strand=D; shift=8; score=0.474047; --------AGGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0

MA0806.1_shift8 (TBX4)
; oligos_8nt_mkv5_m2 versus MA0806.1 (TBX4); m=38/43; ncol2=8; w=8; offset=7; strand=D; shift=8; score=0.469002; --------AGGTGTgA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0

MA0803.1_shift8 (TBX15)
; oligos_8nt_mkv5_m2 versus MA0803.1 (TBX15); m=39/43; ncol2=8; w=8; offset=7; strand=D; shift=8; score= 0.4598; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10502.0 458.0 19.0 61.0 0.0 140.0 44.0 10502.0 c 0 0 0 0 0 0 0 0 74.0 101.0 7.0 175.0 8.0 435.0 454.0 71.0 g 0 0 0 0 0 0 0 0 664.0 10502.0 10502.0 245.0 10502.0 324.0 10502.0 306.0 t 0 0 0 0 0 0 0 0 112.0 103.0 0.0 10502.0 0.0 10502.0 937.0 96.0

MA0805.1_shift8 (TBX1)
; oligos_8nt_mkv5_m2 versus MA0805.1 (TBX1); m=40/43; ncol2=8; w=8; offset=7; strand=D; shift=8; score=0.448984; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 11931.0 1560.0 0.0 28.0 0.0 142.0 141.0 11931.0 c 0 0 0 0 0 0 0 0 113.0 711.0 0.0 214.0 5.0 613.0 720.0 33.0 g 0 0 0 0 0 0 0 0 1007.0 11931.0 11931.0 141.0 11931.0 109.0 11931.0 18.0 t 0 0 0 0 0 0 0 0 564.0 669.0 0.0 11931.0 0.0 11931.0 1039.0 0.0

MA0801.1_shift8 (MGA)
; oligos_8nt_mkv5_m2 versus MA0801.1 (MGA); m=41/43; ncol2=8; w=8; offset=7; strand=D; shift=8; score=0.438049; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 30489.0 4310.0 16.0 12.0 14.0 1042.0 689.0 30489.0 c 0 0 0 0 0 0 0 0 1151.0 3737.0 509.0 3534.0 1.0 3089.0 1753.0 110.0 g 0 0 0 0 0 0 0 0 8873.0 30489.0 30489.0 96.0 30489.0 381.0 30489.0 920.0 t 0 0 0 0 0 0 0 0 4160.0 1929.0 104.0 30489.0 11.0 30489.0 6465.0 274.0

MA1567.1_shift7 (TBX6)
; oligos_8nt_mkv5_m2 versus MA1567.1 (TBX6); m=42/43; ncol2=10; w=9; offset=6; strand=D; shift=7; score=0.423833; -------ragGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 2998.0 11087.0 1882.0 58.0 44.0 14.0 552.0 1430.0 11087.0 c 0 0 0 0 0 0 0 1630.0 1173.0 2913.0 63.0 1002.0 0.0 3053.0 4876.0 652.0 g 0 0 0 0 0 0 0 4003.0 3347.0 11087.0 11087.0 0.0 11087.0 320.0 11087.0 2251.0 t 0 0 0 0 0 0 0 2456.0 2157.0 1058.0 0.0 11087.0 12.0 11087.0 5964.0 713.0

MA1566.1_shift7 (TBX3)
; oligos_8nt_mkv5_m2 versus MA1566.1 (TBX3); m=43/43; ncol2=10; w=9; offset=6; strand=D; shift=7; score=0.416396; -------ragGTGTsa ; cor=; Ncor= a 0 0 0 0 0 0 0 644.0 2544.0 427.0 6.0 16.0 0.0 115.0 170.0 2544.0 c 0 0 0 0 0 0 0 399.0 481.0 862.0 45.0 735.0 0.0 634.0 1471.0 410.0 g 0 0 0 0 0 0 0 1003.0 1207.0 2544.0 2544.0 0.0 2544.0 155.0 2544.0 947.0 t 0 0 0 0 0 0 0 497.0 760.0 302.0 0.0 2544.0 0.0 2544.0 1112.0 484.0

One-to-n matrix alignment; reference matrix: positions_6nt_m5_shift1 ; 25 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m5_shift1 (positions_6nt_m5positions_6nt_m5)
; positions_6nt_m5 (positions_6nt_m5positions_6nt_m5); m=0 (reference); ncol1=15; shift=1; ncol=18; -sscAGCAGCTGCyss-- ; Alignment reference a 0 475 499 214 1440 198 2 2027 4 5 5 4 77 332 477 308 0 0 c 0 602 527 1195 145 84 2057 10 7 2039 13 1 1567 873 552 778 0 0 g 0 646 735 422 227 1752 3 11 2049 13 15 2057 137 251 654 538 0 0 t 0 339 301 231 250 28 0 14 2 5 2029 0 281 606 379 438 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_6nt_m5 versus MA0500.2_rc (MYOG_rc); m=1/24; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.75691; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; positions_6nt_m5 versus MA0832.1_rc (Tcf21_rc); m=2/24; ncol2=14; w=14; offset=1; strand=R; shift=2; score=0.702004; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; positions_6nt_m5 versus MA1631.1 (ASCL1(var.2)); m=3/24; ncol2=13; w=13; offset=2; strand=D; shift=3; score=0.697134; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA1485.1_shift2 (FERD3L)
; positions_6nt_m5 versus MA1485.1 (FERD3L); m=4/24; ncol2=14; w=14; offset=1; strand=D; shift=2; score=0.691648; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0830.2_shift3 (TCF4)
; positions_6nt_m5 versus MA0830.2 (TCF4); m=5/24; ncol2=13; w=13; offset=2; strand=D; shift=3; score=0.684914; ---cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA1529.1_shift0 (NHLH2)
; positions_6nt_m5 versus MA1529.1 (NHLH2); m=6/24; ncol2=18; w=15; offset=-1; strand=D; shift=0; score=0.668569; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA1619.1_shift3 (Ptf1a(var.2))
; positions_6nt_m5 versus MA1619.1 (Ptf1a(var.2)); m=7/24; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.66351; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; positions_6nt_m5 versus MA1641.1_rc (MYF5_rc); m=8/24; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.657432; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA0521.1_shift4 (Tcf12)
; positions_6nt_m5 versus MA0521.1 (Tcf12); m=9/24; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.657276; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA0499.2_shift3 (MYOD1)
; positions_6nt_m5 versus MA0499.2 (MYOD1); m=10/24; ncol2=13; w=13; offset=2; strand=D; shift=3; score=0.652148; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA0816.1_shift4 (Ascl2)
; positions_6nt_m5 versus MA0816.1 (Ascl2); m=11/24; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.644056; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1100.2_shift4 (ASCL1)
; positions_6nt_m5 versus MA1100.2 (ASCL1); m=12/24; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.629233; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; positions_6nt_m5 versus MA0048.2_rc (NHLH1_rc); m=13/24; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.615502; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; positions_6nt_m5 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=14/24; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.611333; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; positions_6nt_m5 versus MA1472.1 (BHLHA15(var.2)); m=15/24; ncol2=10; w=10; offset=3; strand=D; shift=4; score= 0.591; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; positions_6nt_m5 versus MA1467.1 (ATOH1(var.2)); m=16/24; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.55895; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; positions_6nt_m5 versus MA1648.1_rc (TCF12(var.2)_rc); m=17/24; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.557149; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; positions_6nt_m5 versus MA0522.3_rc (TCF3_rc); m=18/24; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.549711; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; positions_6nt_m5 versus MA0691.1 (TFAP4); m=19/24; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.540539; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; positions_6nt_m5 versus MA0665.1_rc (MSC_rc); m=20/24; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.523667; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA1558.1_shift4 (SNAI1)
; positions_6nt_m5 versus MA1558.1 (SNAI1); m=21/24; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.485707; ----drCAGGTGyr---- ; cor=; Ncor= a 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 0 c 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 0 g 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 0 t 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; positions_6nt_m5 versus MA0820.1 (FIGLA); m=22/24; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.479191; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

MA1559.1_shift4 (SNAI3)
; positions_6nt_m5 versus MA1559.1 (SNAI3); m=23/24; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.479021; ----arCAGGTGya---- ; cor=; Ncor= a 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0

MA0667.1_shift4 (MYF6)
; positions_6nt_m5 versus MA0667.1 (MYF6); m=24/24; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.477119; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_6nt_m7_shift2 ; 25 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m7_shift2 (positions_6nt_m7positions_6nt_m7)
; positions_6nt_m7 (positions_6nt_m7positions_6nt_m7); m=0 (reference); ncol1=15; shift=2; ncol=18; --ssrGCAGCTGCTgcs- ; Alignment reference a 0 0 450 345 700 272 1 2053 2 4 22 0 25 255 221 302 337 0 c 0 0 534 747 435 152 2082 15 14 2074 9 5 1789 221 397 783 642 0 g 0 0 775 564 573 1560 0 13 2065 5 11 2078 79 139 1283 494 608 0 t 0 0 326 429 377 101 2 4 4 2 2043 2 192 1470 184 506 498 0

MA0500.2_shift3 (MYOG)
; positions_6nt_m7 versus MA0500.2 (MYOG); m=1/24; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.756375; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA0832.1_shift2 (Tcf21)
; positions_6nt_m7 versus MA0832.1 (Tcf21); m=2/24; ncol2=14; w=14; offset=0; strand=D; shift=2; score=0.706951; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; positions_6nt_m7 versus MA1485.1_rc (FERD3L_rc); m=3/24; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.693214; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; positions_6nt_m7 versus MA1631.1 (ASCL1(var.2)); m=4/24; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.688174; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA1529.1_rc_shift0 (NHLH2_rc)
; positions_6nt_m7 versus MA1529.1_rc (NHLH2_rc); m=5/24; ncol2=18; w=15; offset=-2; strand=R; shift=0; score=0.67844; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA0830.2_rc_shift2 (TCF4_rc)
; positions_6nt_m7 versus MA0830.2_rc (TCF4_rc); m=6/24; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.678305; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; positions_6nt_m7 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/24; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.663926; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; positions_6nt_m7 versus MA0521.1_rc (Tcf12_rc); m=8/24; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.661026; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1641.1_shift3 (MYF5)
; positions_6nt_m7 versus MA1641.1 (MYF5); m=9/24; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.655662; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; positions_6nt_m7 versus MA0816.1_rc (Ascl2_rc); m=10/24; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.644621; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; positions_6nt_m7 versus MA0499.2_rc (MYOD1_rc); m=11/24; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.641538; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; positions_6nt_m7 versus MA1100.2_rc (ASCL1_rc); m=12/24; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.628181; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; positions_6nt_m7 versus MA0048.2 (NHLH1); m=13/24; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.624816; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; positions_6nt_m7 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=14/24; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.61367; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; positions_6nt_m7 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=15/24; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.592069; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; positions_6nt_m7 versus MA1648.1 (TCF12(var.2)); m=16/24; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.558555; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift4 (TCF3)
; positions_6nt_m7 versus MA0522.3 (TCF3); m=17/24; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.550932; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; positions_6nt_m7 versus MA1467.1_rc (ATOH1(var.2)_rc); m=18/24; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.549158; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; positions_6nt_m7 versus MA0691.1_rc (TFAP4_rc); m=19/24; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.545105; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA0665.1_shift4 (MSC)
; positions_6nt_m7 versus MA0665.1 (MSC); m=20/24; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.525671; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA1558.1_rc_shift4 (SNAI1_rc)
; positions_6nt_m7 versus MA1558.1_rc (SNAI1_rc); m=21/24; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.489866; ----yrCACCTGyh---- ; cor=; Ncor= a 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0

MA1559.1_rc_shift4 (SNAI3_rc)
; positions_6nt_m7 versus MA1559.1_rc (SNAI3_rc); m=22/24; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.482532; ----trCACCTGyt---- ; cor=; Ncor= a 0 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 c 0 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 g 0 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 t 0 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0

MA0820.1_rc_shift4 (FIGLA_rc)
; positions_6nt_m7 versus MA0820.1_rc (FIGLA_rc); m=23/24; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.482402; ----wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; positions_6nt_m7 versus MA0667.1_rc (MYF6_rc); m=24/24; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.477184; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m28_shift2 ; 26 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m28_shift2 (oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28)
; oligos_8nt_mkv5_m28 (oligos_8nt_mkv5_m28oligos_8nt_mkv5_m28); m=0 (reference); ncol1=16; shift=2; ncol=18; --ssaGGGGGCGGGGcsg ; Alignment reference a 0 0 29 40 108 10 5 6 0 1 24 5 3 5 2 33 35 38 c 0 0 62 60 50 24 16 15 6 2 184 4 10 12 11 145 60 59 g 0 0 118 120 56 193 206 210 231 233 15 226 219 220 223 45 105 112 t 0 0 28 17 23 10 10 6 0 1 14 2 5 0 1 14 37 28

MA0685.1_rc_shift2 (SP4_rc)
; oligos_8nt_mkv5_m28 versus MA0685.1_rc (SP4_rc); m=1/25; ncol2=17; w=16; offset=0; strand=R; shift=2; score=0.756089; --rraGkGGGCGTGGCyw ; cor=; Ncor= a 0 0 1509.0 2078.0 3043.0 1067.0 67.0 72.0 0.0 0.0 55.0 0.0 0.0 135.0 4.0 16.0 199.0 1809.0 c 0 0 556.0 363.0 234.0 21.0 9.0 3.0 2.0 4.0 5444.0 0.0 3.0 5.0 0.0 4774.0 1639.0 65.0 g 0 0 1180.0 1206.0 897.0 4276.0 2430.0 4667.0 4732.0 4681.0 14.0 4662.0 991.0 4492.0 4443.0 6.0 146.0 156.0 t 0 0 967.0 582.0 1140.0 113.0 1840.0 0.0 3.0 2.0 10.0 2.0 3004.0 2.0 260.0 939.0 2600.0 2173.0

MA0516.2_rc_shift3 (SP2_rc)
; oligos_8nt_mkv5_m28 versus MA0516.2_rc (SP2_rc); m=2/25; ncol2=17; w=15; offset=1; strand=R; shift=3; score=0.696613; ---rrGkGGGCGGGrCTT ; cor=; Ncor= a 0 0 0 352.0 503.0 101.0 17.0 27.0 7.0 18.0 45.0 12.0 8.0 0.0 327.0 43.0 67.0 180.0 c 0 0 0 88.0 0.0 1.0 22.0 0.0 26.0 0.0 780.0 22.0 13.0 1.0 8.0 791.0 33.0 0.0 g 0 0 0 203.0 221.0 679.0 390.0 774.0 793.0 795.0 52.0 788.0 786.0 774.0 456.0 127.0 84.0 76.0 t 0 0 0 150.0 109.0 22.0 402.0 23.0 5.0 0.0 82.0 4.0 16.0 14.0 34.0 54.0 753.0 613.0

MA0746.2_rc_shift4 (SP3_rc)
; oligos_8nt_mkv5_m28 versus MA0746.2_rc (SP3_rc); m=3/25; ncol2=13; w=13; offset=2; strand=R; shift=4; score=0.68832; ----rGkGGGCGTGGys- ; cor=; Ncor= a 0 0 0 0 1943.0 1475.0 552.0 718.0 9.0 0.0 504.0 12.0 11.0 202.0 345.0 421.0 1545.0 0 c 0 0 0 0 524.0 297.0 39.0 2.0 0.0 0.0 6591.0 0.0 2.0 54.0 226.0 4445.0 1895.0 0 g 0 0 0 0 2608.0 5116.0 3160.0 6591.0 6591.0 6591.0 0.0 6591.0 1338.0 6591.0 6591.0 531.0 1884.0 0 t 0 0 0 0 1516.0 556.0 3430.0 2.0 0.0 0.0 465.0 6.0 5253.0 160.0 664.0 2146.0 1267.0 0

MA0740.1_rc_shift3 (KLF14_rc)
; oligos_8nt_mkv5_m28 versus MA0740.1_rc (KLF14_rc); m=4/25; ncol2=14; w=14; offset=1; strand=R; shift=3; score=0.683194; ---arRkGGGCGTGgym- ; cor=; Ncor= a 0 0 0 1670.0 1041.0 559.0 31.0 65.0 6.0 0.0 31.0 2.0 5.0 248.0 404.0 71.0 693.0 0 c 0 0 0 314.0 89.0 15.0 1.0 4.0 3.0 3.0 2939.0 0.0 58.0 10.0 96.0 2280.0 966.0 0 g 0 0 0 741.0 594.0 1463.0 961.0 1609.0 1604.0 1602.0 36.0 1596.0 136.0 1599.0 1360.0 73.0 215.0 0 t 0 0 0 649.0 280.0 32.0 716.0 0.0 0.0 0.0 69.0 2.0 1708.0 0.0 526.0 1205.0 430.0 0

MA0079.4_rc_shift4 (SP1_rc)
; oligos_8nt_mkv5_m28 versus MA0079.4_rc (SP1_rc); m=5/25; ncol2=15; w=14; offset=2; strand=R; shift=4; score= 0.6631; ----dGkGGGCGTGGYyw ; cor=; Ncor= a 0 0 0 0 18415.0 10717.0 1373.0 1440.0 0.0 17.0 867.0 31.0 0.0 1670.0 124.0 153.0 1184.0 19877.0 c 0 0 0 0 3044.0 919.0 15.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 82.0 37543.0 19477.0 999.0 g 0 0 0 0 15606.0 37612.0 24196.0 48772.0 49662.0 49666.0 0.0 49660.0 12672.0 49649.0 48854.0 0.0 1530.0 1872.0 t 0 0 0 0 12598.0 1195.0 24666.0 0.0 8.0 0.0 959.0 0.0 42154.0 55.0 962.0 14584.0 28895.0 28233.0

MA1653.1_rc_shift5 (ZNF148_rc)
; oligos_8nt_mkv5_m28 versus MA1653.1_rc (ZNF148_rc); m=6/25; ncol2=12; w=12; offset=3; strand=R; shift=5; score=0.658223; -----ggGGGAGGGGsr- ; cor=; Ncor= a 0 0 0 0 0 1180.0 1190.0 1082.0 465.0 67.0 10040.0 66.0 136.0 200.0 113.0 2664.0 2966.0 0 c 0 0 0 0 0 2064.0 1924.0 392.0 460.0 112.0 1012.0 211.0 401.0 471.0 205.0 3215.0 2241.0 0 g 0 0 0 0 0 7114.0 7239.0 9283.0 9922.0 10954.0 14.0 10833.0 10526.0 10396.0 10799.0 4057.0 4593.0 0 t 0 0 0 0 0 841.0 846.0 442.0 352.0 66.0 133.0 89.0 136.0 132.0 82.0 1263.0 1399.0 0

MA1513.1_rc_shift5 (KLF15_rc)
; oligos_8nt_mkv5_m28 versus MA1513.1_rc (KLF15_rc); m=7/25; ncol2=11; w=11; offset=3; strand=R; shift=5; score=0.650285; -----sgGGGCGGGgs-- ; cor=; Ncor= a 0 0 0 0 0 2165.0 1602.0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 1744.0 0 0 c 0 0 0 0 0 3124.0 1934.0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 5538.0 0 0 g 0 0 0 0 0 5013.0 6267.0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 2903.0 0 0 t 0 0 0 0 0 1067.0 1566.0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 1184.0 0 0

MA1564.1_rc_shift4 (SP9_rc)
; oligos_8nt_mkv5_m28 versus MA1564.1_rc (SP9_rc); m=8/25; ncol2=12; w=12; offset=2; strand=R; shift=4; score=0.641378; ----rgkGGGCGkGgy-- ; cor=; Ncor= a 0 0 0 0 660.0 588.0 353.0 412.0 30.0 14.0 173.0 9.0 96.0 284.0 518.0 226.0 0 0 c 0 0 0 0 204.0 191.0 38.0 24.0 0.0 0.0 2451.0 17.0 56.0 113.0 309.0 952.0 0 0 g 0 0 0 0 1167.0 1863.0 1259.0 2451.0 2451.0 2451.0 200.0 2451.0 1127.0 2451.0 2451.0 440.0 0 0 t 0 0 0 0 420.0 188.0 1192.0 39.0 0.0 22.0 211.0 2.0 2451.0 321.0 566.0 834.0 0 0

MA0753.2_rc_shift5 (ZNF740_rc)
; oligos_8nt_mkv5_m28 versus MA0753.2_rc (ZNF740_rc); m=9/25; ncol2=13; w=13; offset=3; strand=R; shift=5; score=0.635587; -----gTGGGGGGGGyrg ; cor=; Ncor= a 0 0 0 0 0 246.0 134.0 4.0 3.0 6.0 11.0 15.0 16.0 1.0 49.0 312.0 378.0 185.0 c 0 0 0 0 0 54.0 68.0 6.0 3.0 7.0 3.0 7.0 4.0 14.0 37.0 1055.0 72.0 182.0 g 0 0 0 0 0 1055.0 239.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 343.0 677.0 502.0 t 0 0 0 0 0 207.0 1055.0 115.0 2.0 10.0 23.0 22.0 18.0 110.0 60.0 727.0 162.0 186.0

MA0039.4_rc_shift5 (KLF4_rc)
; oligos_8nt_mkv5_m28 versus MA0039.4_rc (KLF4_rc); m=10/25; ncol2=12; w=12; offset=3; strand=R; shift=5; score=0.619838; -----sdGGGTGGGGss- ; cor=; Ncor= a 0 0 0 0 0 12219.0 15012.0 2565.0 1218.0 1129.0 3456.0 976.0 1969.0 4633.0 2560.0 11819.0 11484.0 0 c 0 0 0 0 0 14422.0 6292.0 1005.0 1870.0 1470.0 6598.0 793.0 1422.0 1214.0 1583.0 18473.0 14243.0 0 g 0 0 0 0 0 19217.0 18249.0 51045.0 51112.0 52366.0 161.0 52875.0 45405.0 47865.0 49209.0 14038.0 17520.0 0 t 0 0 0 0 0 9959.0 16264.0 1202.0 1617.0 852.0 45602.0 1173.0 7021.0 2105.0 2465.0 11487.0 12570.0 0

MA0747.1_rc_shift4 (SP8_rc)
; oligos_8nt_mkv5_m28 versus MA0747.1_rc (SP8_rc); m=11/25; ncol2=12; w=12; offset=2; strand=R; shift=4; score=0.617158; ----rGkGGGcGTGky-- ; cor=; Ncor= a 0 0 0 0 82.0 39.0 3.0 15.0 0.0 2.0 39.0 5.0 2.0 13.0 4.0 10.0 0 0 c 0 0 0 0 1.0 21.0 6.0 4.0 3.0 6.0 167.0 1.0 1.0 0.0 0.0 78.0 0 0 g 0 0 0 0 52.0 167.0 77.0 167.0 167.0 167.0 37.0 167.0 33.0 167.0 113.0 27.0 0 0 t 0 0 0 0 31.0 13.0 90.0 0.0 2.0 5.0 25.0 7.0 133.0 25.0 54.0 52.0 0 0

MA0741.1_rc_shift5 (KLF16_rc)
; oligos_8nt_mkv5_m28 versus MA0741.1_rc (KLF16_rc); m=12/25; ncol2=11; w=11; offset=3; strand=R; shift=5; score=0.607578; -----GKGGGcGKGkc-- ; cor=; Ncor= a 0 0 0 0 0 370.0 40.0 97.0 0.0 0.0 403.0 19.0 0.0 45.0 116.0 240.0 0 0 c 0 0 0 0 0 23.0 19.0 3.0 8.0 0.0 1612.0 17.0 32.0 6.0 77.0 1612.0 0 0 g 0 0 0 0 0 1612.0 1175.0 1612.0 1612.0 1612.0 173.0 1612.0 461.0 1612.0 1612.0 535.0 0 0 t 0 0 0 0 0 32.0 437.0 16.0 2.0 8.0 497.0 66.0 1150.0 62.0 901.0 666.0 0 0

MA0599.1_rc_shift6 (KLF5_rc)
; oligos_8nt_mkv5_m28 versus MA0599.1_rc (KLF5_rc); m=13/25; ncol2=10; w=10; offset=4; strand=R; shift=6; score=0.578267; ------dGGGyGKGGc-- ; cor=; Ncor= a 0 0 0 0 0 0 4101.0 476.0 0.0 0.0 3378.0 0.0 565.0 1603.0 1711.0 2587.0 0 0 c 0 0 0 0 0 0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 7572.0 0 0 g 0 0 0 0 0 0 5595.0 13135.0 13611.0 13611.0 0.0 13611.0 9569.0 12008.0 11900.0 2023.0 0 0 t 0 0 0 0 0 0 3915.0 0.0 0.0 0.0 5051.0 0.0 3477.0 0.0 0.0 1429.0 0 0

MA1515.1_rc_shift6 (KLF2_rc)
; oligos_8nt_mkv5_m28 versus MA1515.1_rc (KLF2_rc); m=14/25; ncol2=11; w=11; offset=4; strand=R; shift=6; score=0.571644; ------wGGGyGkGGys- ; cor=; Ncor= a 0 0 0 0 0 0 1253.0 444.0 9.0 22.0 167.0 78.0 214.0 312.0 346.0 433.0 872.0 0 c 0 0 0 0 0 0 389.0 105.0 195.0 49.0 2920.0 0.0 1060.0 186.0 495.0 2112.0 1320.0 0 g 0 0 0 0 0 0 1142.0 4622.0 4622.0 4622.0 274.0 4622.0 2265.0 4622.0 4622.0 1103.0 1376.0 0 t 0 0 0 0 0 0 1838.0 68.0 128.0 0.0 1702.0 0.0 4622.0 403.0 741.0 2510.0 1054.0 0

MA1522.1_rc_shift6 (MAZ_rc)
; oligos_8nt_mkv5_m28 versus MA1522.1_rc (MAZ_rc); m=15/25; ncol2=11; w=11; offset=4; strand=R; shift=6; score=0.570556; ------ggGGAGGGGss- ; cor=; Ncor= a 0 0 0 0 0 0 3733.0 2814.0 0.0 4.0 14927.0 1.0 6.0 0.0 26.0 3013.0 3108.0 0 c 0 0 0 0 0 0 2539.0 1768.0 96.0 8.0 130.0 347.0 290.0 384.0 75.0 5163.0 4277.0 0 g 0 0 0 0 0 0 6775.0 9372.0 14944.0 14961.0 0.0 14676.0 14731.0 14630.0 14945.0 5068.0 5198.0 0 t 0 0 0 0 0 0 2016.0 1109.0 23.0 90.0 6.0 39.0 36.0 49.0 17.0 1819.0 2480.0 0

MA0162.4_rc_shift1 (EGR1_rc)
; oligos_8nt_mkv5_m28 versus MA0162.4_rc (EGR1_rc); m=16/25; ncol2=14; w=13; offset=-1; strand=R; shift=1; score=0.567113; -skGcGTGGGCGkgg--- ; cor=; Ncor= a 0 5251.0 4909.0 2276.0 2552.0 239.0 759.0 628.0 382.0 368.0 2120.0 797.0 1933.0 4641.0 5280.0 0 0 0 c 0 7852.0 6345.0 2157.0 20544.0 699.0 2122.0 698.0 1455.0 665.0 22237.0 756.0 3854.0 7211.0 6621.0 0 0 0 g 0 13686.0 10441.0 25196.0 2806.0 29507.0 5420.0 28958.0 27321.0 29338.0 1131.0 28403.0 10303.0 14749.0 11610.0 0 0 0 t 0 3809.0 8903.0 969.0 4696.0 153.0 22297.0 314.0 1440.0 227.0 5110.0 642.0 14508.0 3997.0 7087.0 0 0 0

MA1627.1_rc_shift1 (Wt1_rc)
; oligos_8nt_mkv5_m28 versus MA1627.1_rc (Wt1_rc); m=17/25; ncol2=14; w=13; offset=-1; strand=R; shift=1; score=0.564659; -gkGTGGGGGAGgrg--- ; cor=; Ncor= a 0 1110.0 738.0 348.0 354.0 41.0 104.0 276.0 222.0 26.0 4183.0 39.0 500.0 1233.0 1140.0 0 0 0 c 0 1038.0 928.0 436.0 990.0 46.0 101.0 120.0 75.0 42.0 319.0 58.0 404.0 1161.0 794.0 0 0 0 g 0 2023.0 1350.0 3749.0 53.0 4573.0 3636.0 4252.0 4354.0 4602.0 69.0 4546.0 2948.0 1630.0 1881.0 0 0 0 t 0 520.0 1675.0 158.0 3294.0 31.0 850.0 43.0 40.0 21.0 120.0 48.0 839.0 667.0 876.0 0 0 0

MA1512.1_rc_shift5 (KLF11_rc)
; oligos_8nt_mkv5_m28 versus MA1512.1_rc (KLF11_rc); m=18/25; ncol2=11; w=11; offset=3; strand=R; shift=5; score=0.562709; -----GkGGGCGTGgc-- ; cor=; Ncor= a 0 0 0 0 0 1281.0 761.0 885.0 7.0 23.0 349.0 38.0 27.0 506.0 1192.0 1299.0 0 0 c 0 0 0 0 0 358.0 69.0 4.0 20.0 18.0 8291.0 0.0 115.0 156.0 401.0 3930.0 0 0 g 0 0 0 0 0 8403.0 4226.0 8941.0 9166.0 9161.0 52.0 9142.0 1289.0 8662.0 5549.0 2054.0 0 0 t 0 0 0 0 0 581.0 4689.0 0.0 1.0 11.0 2426.0 0.0 8655.0 650.0 2022.0 1882.0 0 0

MA1102.2_shift1 (CTCFL)
; oligos_8nt_mkv5_m28 versus MA1102.2 (CTCFL); m=19/25; ncol2=12; w=11; offset=-1; strand=D; shift=1; score=0.540513; -rsCAGGGGGCgs----- ; cor=; Ncor= a 0 5825.0 2659.0 1301.0 17270.0 86.0 684.0 349.0 193.0 351.0 181.0 4166.0 1771.0 0 0 0 0 0 c 0 4180.0 7033.0 12867.0 413.0 481.0 600.0 1141.0 767.0 270.0 17593.0 3015.0 7727.0 0 0 0 0 0 g 0 4844.0 7094.0 2033.0 329.0 17285.0 16511.0 15425.0 16819.0 17001.0 68.0 9299.0 6341.0 0 0 0 0 0 t 0 3188.0 1251.0 1836.0 25.0 185.0 242.0 1122.0 258.0 415.0 195.0 1557.0 2198.0 0 0 0 0 0

MA1517.1_rc_shift6 (KLF6_rc)
; oligos_8nt_mkv5_m28 versus MA1517.1_rc (KLF6_rc); m=20/25; ncol2=11; w=11; offset=4; strand=R; shift=6; score=0.530612; ------kGGGYGTGgys- ; cor=; Ncor= a 0 0 0 0 0 0 520.0 64.0 0.0 0.0 0.0 24.0 60.0 140.0 219.0 136.0 499.0 0 c 0 0 0 0 0 0 52.0 12.0 60.0 0.0 2192.0 0.0 60.0 298.0 332.0 1157.0 626.0 0 g 0 0 0 0 0 0 665.0 2192.0 2192.0 2192.0 0.0 2192.0 284.0 2192.0 2192.0 490.0 624.0 0 t 0 0 0 0 0 0 955.0 71.0 25.0 0.0 1024.0 0.0 2192.0 432.0 569.0 1035.0 443.0 0

MA1516.1_rc_shift6 (KLF3_rc)
; oligos_8nt_mkv5_m28 versus MA1516.1_rc (KLF3_rc); m=21/25; ncol2=11; w=11; offset=4; strand=R; shift=6; score=0.527121; ------wGGGCGyGGyc- ; cor=; Ncor= a 0 0 0 0 0 0 14617.0 1218.0 0.0 0.0 1212.0 1409.0 419.0 335.0 705.0 207.0 6319.0 0 c 0 0 0 0 0 0 1514.0 48.0 29.0 31.0 43259.0 21.0 16503.0 248.0 1954.0 18489.0 26568.0 0 g 0 0 0 0 0 0 10099.0 43259.0 43259.0 43259.0 334.0 43259.0 707.0 43259.0 43259.0 615.0 2655.0 0 t 0 0 0 0 0 0 17029.0 77.0 83.0 202.0 4245.0 2261.0 26757.0 298.0 1442.0 24771.0 7717.0 0

MA1511.1_rc_shift5 (KLF10_rc)
; oligos_8nt_mkv5_m28 versus MA1511.1_rc (KLF10_rc); m=22/25; ncol2=11; w=11; offset=3; strand=R; shift=5; score=0.525127; -----rkGGGyGTGkc-- ; cor=; Ncor= a 0 0 0 0 0 6274.0 2686.0 2198.0 0.0 0.0 543.0 157.0 6.0 485.0 1373.0 1251.0 0 0 c 0 0 0 0 0 770.0 587.0 0.0 0.0 2.0 6234.0 3.0 1723.0 98.0 1299.0 14086.0 0 0 g 0 0 0 0 0 13118.0 11403.0 19244.0 19994.0 19995.0 11.0 19907.0 1663.0 19619.0 12654.0 2435.0 0 0 t 0 0 0 0 0 934.0 7545.0 0.0 0.0 1.0 13506.0 238.0 18751.0 633.0 6633.0 4746.0 0 0

MA1630.1_shift2 (Znf281)
; oligos_8nt_mkv5_m28 versus MA1630.1 (Znf281); m=23/25; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.518682; --ggTGGGGGAgG----- ; cor=; Ncor= a 0 0 1197.0 996.0 8.0 19.0 25.0 36.0 22.0 18.0 6504.0 735.0 374.0 0 0 0 0 0 c 0 0 878.0 1076.0 233.0 88.0 163.0 131.0 115.0 41.0 45.0 418.0 356.0 0 0 0 0 0 g 0 0 3539.0 3751.0 29.0 6449.0 6356.0 6378.0 6402.0 6457.0 8.0 4312.0 5523.0 0 0 0 0 0 t 0 0 954.0 745.0 6298.0 12.0 24.0 23.0 29.0 52.0 11.0 1103.0 315.0 0 0 0 0 0

MA1578.1_rc_shift3 (VEZF1_rc)
; oligos_8nt_mkv5_m28 versus MA1578.1_rc (VEZF1_rc); m=24/25; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.463876; ---warkGGGGGG----- ; cor=; Ncor= a 0 0 0 339.0 377.0 334.0 125.0 8.0 4.0 0.0 0.0 0.0 0.0 0 0 0 0 0 c 0 0 0 152.0 211.0 70.0 110.0 3.0 0.0 0.0 0.0 0.0 137.0 0 0 0 0 0 g 0 0 0 173.0 171.0 550.0 357.0 977.0 989.0 997.0 995.0 997.0 790.0 0 0 0 0 0 t 0 0 0 333.0 240.0 44.0 406.0 10.0 6.0 2.0 4.0 1.0 71.0 0 0 0 0 0

MA0155.1_shift0 (INSM1)
; oligos_8nt_mkv5_m28 versus MA0155.1 (INSM1); m=25/25; ncol2=12; w=10; offset=-2; strand=D; shift=0; score=0.451427; TGymwGGGGkcr------ ; cor=; Ncor= a 1.0 0.0 0.0 6.0 16.0 0.0 0.0 0.0 0.0 0.0 3.0 10.0 0 0 0 0 0 0 c 0.0 0.0 8.0 15.0 0.0 0.0 1.0 0.0 0.0 2.0 16.0 0.0 0 0 0 0 0 0 g 4.0 20.0 3.0 0.0 0.0 24.0 23.0 24.0 24.0 16.0 0.0 12.0 0 0 0 0 0 0 t 19.0 4.0 13.0 3.0 8.0 0.0 0.0 0.0 0.0 6.0 5.0 2.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m9_shift0 ; 28 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m9_shift0 (positions_7nt_m9positions_7nt_m9)
; positions_7nt_m9 (positions_7nt_m9positions_7nt_m9); m=0 (reference); ncol1=15; shift=0; ncol=18; ssgcAGCAGCTGyys--- ; Alignment reference a 476 548 559 250 1584 7 0 2306 0 3 0 2 246 348 510 0 0 0 c 747 706 484 1282 190 6 2322 8 3 2309 9 0 875 796 659 0 0 0 g 638 677 923 569 202 2308 0 4 2317 5 6 2320 388 521 752 0 0 0 t 461 391 356 221 346 1 0 4 2 5 2307 0 813 657 401 0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_7nt_m9 versus MA0500.2_rc (MYOG_rc); m=1/27; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.752579; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; positions_7nt_m9 versus MA1631.1_rc (ASCL1(var.2)_rc); m=2/27; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.686953; --gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; positions_7nt_m9 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=3/27; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.679801; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; positions_7nt_m9 versus MA1641.1_rc (MYF5_rc); m=4/27; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.672963; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; positions_7nt_m9 versus MA0521.1_rc (Tcf12_rc); m=5/27; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.666714; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1529.1_shift0 (NHLH2)
; positions_7nt_m9 versus MA1529.1 (NHLH2); m=6/27; ncol2=18; w=15; offset=0; strand=D; shift=0; score=0.660321; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0830.2_rc_shift2 (TCF4_rc)
; positions_7nt_m9 versus MA0830.2_rc (TCF4_rc); m=7/27; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.657622; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA1485.1_shift2 (FERD3L)
; positions_7nt_m9 versus MA1485.1 (FERD3L); m=8/27; ncol2=14; w=13; offset=2; strand=D; shift=2; score=0.63649; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; positions_7nt_m9 versus MA0816.1_rc (Ascl2_rc); m=9/27; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.633816; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; positions_7nt_m9 versus MA0832.1_rc (Tcf21_rc); m=10/27; ncol2=14; w=13; offset=2; strand=R; shift=2; score=0.627973; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA1100.2_shift4 (ASCL1)
; positions_7nt_m9 versus MA1100.2 (ASCL1); m=11/27; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.618873; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1618.1_rc_shift2 (Ptf1a_rc)
; positions_7nt_m9 versus MA1618.1_rc (Ptf1a_rc); m=12/27; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.617279; --dmaaCATCTGtkh--- ; cor=; Ncor= a 0 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 c 0 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 g 0 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 t 0 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; positions_7nt_m9 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=13/27; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.612783; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; positions_7nt_m9 versus MA0048.2_rc (NHLH1_rc); m=14/27; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.610321; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA0499.2_shift3 (MYOD1)
; positions_7nt_m9 versus MA0499.2 (MYOD1); m=15/27; ncol2=13; w=12; offset=3; strand=D; shift=3; score=0.599069; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; positions_7nt_m9 versus MA1472.1 (BHLHA15(var.2)); m=16/27; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.595758; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; positions_7nt_m9 versus MA1648.1_rc (TCF12(var.2)_rc); m=17/27; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.578577; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; positions_7nt_m9 versus MA0522.3_rc (TCF3_rc); m=18/27; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.572714; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; positions_7nt_m9 versus MA1467.1 (ATOH1(var.2)); m=19/27; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.557327; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; positions_7nt_m9 versus MA0691.1_rc (TFAP4_rc); m=20/27; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.551725; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; positions_7nt_m9 versus MA0665.1_rc (MSC_rc); m=21/27; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.538026; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA0745.2_shift3 (SNAI2)
; positions_7nt_m9 versus MA0745.2 (SNAI2); m=22/27; ncol2=13; w=12; offset=3; strand=D; shift=3; score=0.535021; ---aygCACCTGTmry-- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0

MA0103.3_rc_shift3 (ZEB1_rc)
; positions_7nt_m9 versus MA0103.3_rc (ZEB1_rc); m=23/27; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.522767; ---sssCAGGTGss---- ; cor=; Ncor= a 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 0 0 0 c 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 0 0 0 g 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 0 0 0 t 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; positions_7nt_m9 versus MA0820.1 (FIGLA); m=24/27; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.490699; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

MA1558.1_shift4 (SNAI1)
; positions_7nt_m9 versus MA1558.1 (SNAI1); m=25/27; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.490196; ----drCAGGTGyr---- ; cor=; Ncor= a 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 0 c 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 0 g 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 0 t 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0 0

MA0667.1_shift4 (MYF6)
; positions_7nt_m9 versus MA0667.1 (MYF6); m=26/27; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.489435; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

MA1559.1_rc_shift4 (SNAI3_rc)
; positions_7nt_m9 versus MA1559.1_rc (SNAI3_rc); m=27/27; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.473819; ----trCACCTGyt---- ; cor=; Ncor= a 0 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 c 0 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 g 0 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 t 0 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_8nt_m6_shift4 ; 33 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_8nt_m6_shift4 (positions_8nt_m6positions_8nt_m6)
; positions_8nt_m6 (positions_8nt_m6positions_8nt_m6); m=0 (reference); ncol1=15; shift=4; ncol=19; ----sstGACAGCTGCcss ; Alignment reference a 0 0 0 0 178 164 127 18 668 2 741 5 1 0 2 22 166 156 135 c 0 0 0 0 190 229 89 16 24 742 1 12 730 4 3 649 355 198 226 g 0 0 0 0 233 261 175 703 32 1 1 726 11 3 736 30 55 236 218 t 0 0 0 0 144 91 354 8 21 0 2 2 3 738 4 44 169 155 166

MA0499.2_rc_shift5 (MYOD1_rc)
; positions_8nt_m6 versus MA0499.2_rc (MYOD1_rc); m=1/32; ncol2=13; w=13; offset=1; strand=R; shift=5; score=0.751148; -----rkrACAGGTGcwg- ; cor=; Ncor= a 0 0 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 0 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 0 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 0 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0

MA1485.1_rc_shift5 (FERD3L_rc)
; positions_8nt_m6 versus MA1485.1_rc (FERD3L_rc); m=2/32; ncol2=14; w=14; offset=1; strand=R; shift=5; score=0.698282; -----GTrACAGCTGkyrC ; cor=; Ncor= a 0 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 0 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0

MA0500.2_rc_shift6 (MYOG_rc)
; positions_8nt_m6 versus MA0500.2_rc (MYOG_rc); m=3/32; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.688259; ------sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA1641.1_shift6 (MYF5)
; positions_8nt_m6 versus MA1641.1 (MYF5); m=4/32; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.678838; ------gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0

MA0832.1_shift5 (Tcf21)
; positions_8nt_m6 versus MA0832.1 (Tcf21); m=5/32; ncol2=14; w=14; offset=1; strand=D; shift=5; score=0.674821; -----ryAACAGCTGTTry ; cor=; Ncor= a 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0

MA1619.1_shift6 (Ptf1a(var.2))
; positions_8nt_m6 versus MA1619.1 (Ptf1a(var.2)); m=6/32; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.670927; ------rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA0521.1_shift7 (Tcf12)
; positions_8nt_m6 versus MA0521.1 (Tcf12); m=7/32; ncol2=11; w=11; offset=3; strand=D; shift=7; score=0.666732; -------rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA0745.2_rc_shift5 (SNAI2_rc)
; positions_8nt_m6 versus MA0745.2_rc (SNAI2_rc); m=8/32; ncol2=13; w=13; offset=1; strand=R; shift=5; score=0.664922; -----rykACAGGTGcrt- ; cor=; Ncor= a 0 0 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 0 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 0 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 0 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0

MA0796.1_shift6 (TGIF1)
; positions_8nt_m6 versus MA0796.1 (TGIF1); m=9/32; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.627509; ------TGACAGCTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 c 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 g 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 t 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0

MA1571.1_rc_shift6 (TGIF2LX_rc)
; positions_8nt_m6 versus MA1571.1_rc (TGIF2LX_rc); m=10/32; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.626758; ------TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0

MA1631.1_shift6 (ASCL1(var.2))
; positions_8nt_m6 versus MA1631.1 (ASCL1(var.2)); m=11/32; ncol2=13; w=13; offset=2; strand=D; shift=6; score=0.625209; ------cdgCACCTGCysc ; cor=; Ncor= a 0 0 0 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 c 0 0 0 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 g 0 0 0 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 t 0 0 0 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0

MA0797.1_shift6 (TGIF2)
; positions_8nt_m6 versus MA0797.1 (TGIF2); m=12/32; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.619316; ------TGACAGsTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0

MA1572.1_rc_shift6 (TGIF2LY_rc)
; positions_8nt_m6 versus MA1572.1_rc (TGIF2LY_rc); m=13/32; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.618453; ------TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0

MA0830.2_rc_shift5 (TCF4_rc)
; positions_8nt_m6 versus MA0830.2_rc (TCF4_rc); m=14/32; ncol2=13; w=13; offset=1; strand=R; shift=5; score=0.61168; -----ssggCAGGTGccg- ; cor=; Ncor= a 0 0 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 c 0 0 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 g 0 0 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 t 0 0 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0

MA0783.1_shift6 (PKNOX2)
; positions_8nt_m6 versus MA0783.1 (PKNOX2); m=15/32; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.58455; ------TGACAGsTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 0 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 0 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0

MA1467.1_rc_shift7 (ATOH1(var.2)_rc)
; positions_8nt_m6 versus MA1467.1_rc (ATOH1(var.2)_rc); m=16/32; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.574151; -------RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0

MA1100.2_rc_shift7 (ASCL1_rc)
; positions_8nt_m6 versus MA1100.2_rc (ASCL1_rc); m=17/32; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.574076; -------rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0

MA1635.1_shift7 (BHLHE22(var.2))
; positions_8nt_m6 versus MA1635.1 (BHLHE22(var.2)); m=18/32; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.56668; -------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA1472.1_rc_shift7 (BHLHA15(var.2)_rc)
; positions_8nt_m6 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=19/32; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.561736; -------rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0

MA0816.1_shift7 (Ascl2)
; positions_8nt_m6 versus MA0816.1 (Ascl2); m=20/32; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.561707; -------arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA1620.1_shift6 (Ptf1a(var.3))
; positions_8nt_m6 versus MA1620.1 (Ptf1a(var.3)); m=21/32; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.561411; ------rmaCACCTGtky- ; cor=; Ncor= a 0 0 0 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 c 0 0 0 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 g 0 0 0 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 t 0 0 0 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0

MA1648.1_shift7 (TCF12(var.2))
; positions_8nt_m6 versus MA1648.1 (TCF12(var.2)); m=22/32; ncol2=11; w=11; offset=3; strand=D; shift=7; score=0.532555; -------ssCACCTGCys- ; cor=; Ncor= a 0 0 0 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 c 0 0 0 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 g 0 0 0 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 t 0 0 0 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0

MA0522.3_shift7 (TCF3)
; positions_8nt_m6 versus MA0522.3 (TCF3); m=23/32; ncol2=11; w=11; offset=3; strand=D; shift=7; score=0.531029; -------svCACCTGCss- ; cor=; Ncor= a 0 0 0 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 c 0 0 0 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 g 0 0 0 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 t 0 0 0 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0

MA0048.2_shift7 (NHLH1)
; positions_8nt_m6 versus MA0048.2 (NHLH1); m=24/32; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.512314; -------cGCAGCTGCk-- ; cor=; Ncor= a 0 0 0 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 c 0 0 0 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 g 0 0 0 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 t 0 0 0 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0

MA0665.1_shift7 (MSC)
; positions_8nt_m6 versus MA0665.1 (MSC); m=25/32; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.507384; -------AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 0 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 0 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0

MA0691.1_shift7 (TFAP4)
; positions_8nt_m6 versus MA0691.1 (TFAP4); m=26/32; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.497607; -------AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA0667.1_rc_shift7 (MYF6_rc)
; positions_8nt_m6 versus MA0667.1_rc (MYF6_rc); m=27/32; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.480952; -------RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0

MA1559.1_shift7 (SNAI3)
; positions_8nt_m6 versus MA1559.1 (SNAI3); m=28/32; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.469159; -------arCAGGTGya-- ; cor=; Ncor= a 0 0 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 c 0 0 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 g 0 0 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 t 0 0 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0

MA0774.1_shift5 (MEIS2)
; positions_8nt_m6 versus MA0774.1 (MEIS2); m=29/32; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.464666; -----tTGACAGs------ ; cor=; Ncor= a 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 c 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 g 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 t 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0

MA0775.1_shift5 (MEIS3)
; positions_8nt_m6 versus MA0775.1 (MEIS3); m=30/32; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.444526; -----wTGACAgs------ ; cor=; Ncor= a 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 c 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 g 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 t 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0

MA0498.2_shift5 (MEIS1)
; positions_8nt_m6 versus MA0498.2 (MEIS1); m=31/32; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.412898; -----wTGACAg------- ; cor=; Ncor= a 0 0 0 0 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 0 0 0 c 0 0 0 0 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 0 0 0 g 0 0 0 0 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 0 0 0 t 0 0 0 0 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0 0 0 0

MA0782.2_shift0 (PKNOX1)
; positions_8nt_m6 versus MA0782.2 (PKNOX1); m=32/32; ncol2=15; w=11; offset=-4; strand=D; shift=0; score=0.408734; twTGAgTGACAGctr---- ; cor=; Ncor= a 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 0 0 0 c 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 0 0 0 g 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 0 0 0 t 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m33_shift0 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m33_shift0 (dyads_m33dyads_m33)
; dyads_m33 (dyads_m33dyads_m33); m=0 (reference); ncol1=10; shift=0; ncol=16; mdGCCACAgc------ ; Alignment reference a 289 406 0 0 0 1021 0 1021 112 208 0 0 0 0 0 0 c 347 44 0 1021 1019 0 1021 0 242 394 0 0 0 0 0 0 g 199 295 1021 0 2 0 0 0 499 235 0 0 0 0 0 0 t 186 276 0 0 0 0 0 0 168 184 0 0 0 0 0 0

MA0002.2_rc_shift0 (RUNX1_rc)
; dyads_m33 versus MA0002.2_rc (RUNX1_rc); m=1/5; ncol2=11; w=10; offset=0; strand=R; shift=0; score=0.750593; waaCCACAram----- ; cor=; Ncor= a 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 0 0 0 0 c 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 0 0 0 0 g 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 0 0 0 0 t 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0 0 0 0 0

MA0493.1_shift1 (Klf1)
; dyads_m33 versus MA0493.1 (Klf1); m=2/5; ncol2=11; w=9; offset=1; strand=D; shift=1; score=0.580687; -rrCCACACCCw---- ; cor=; Ncor= a 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 0 c 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 0 g 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0 0

MA1107.2_shift0 (KLF9)
; dyads_m33 versus MA1107.2 (KLF9); m=3/5; ncol2=16; w=10; offset=0; strand=D; shift=0; score=0.515414; crgCCACACCCAChyc ; cor=; Ncor= a 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 5875.0 c 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 9519.0 g 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 5681.0 t 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0 4504.0

MA1511.1_shift2 (KLF10)
; dyads_m33 versus MA1511.1 (KLF10); m=4/5; ncol2=11; w=8; offset=2; strand=D; shift=2; score=0.467145; --gmCACrCCCmy--- ; cor=; Ncor= a 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 0 c 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 0 g 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 0 t 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0 0

MA0130.1_shift1 (ZNF354C)
; dyads_m33 versus MA0130.1 (ZNF354C); m=5/5; ncol2=6; w=6; offset=1; strand=D; shift=1; score=0.455142; -mTCCAC--------- ; cor=; Ncor= a 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 0 0 c 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 0 0 g 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 0 0 t 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m4_shift0 ; 26 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m4_shift0 (positions_7nt_m4positions_7nt_m4)
; positions_7nt_m4 (positions_7nt_m4positions_7nt_m4); m=0 (reference); ncol1=15; shift=0; ncol=18; ssgsAGCAGCTGbys--- ; Alignment reference a 440 501 498 241 1586 1 0 2065 3 5 0 0 191 339 467 0 0 0 c 686 622 417 1085 149 4 2064 2 4 2056 8 2 761 655 563 0 0 0 g 563 602 849 559 198 2066 2 3 2065 8 4 2072 525 501 698 0 0 0 t 385 349 310 189 141 3 8 4 2 5 2062 0 597 579 346 0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_7nt_m4 versus MA0500.2_rc (MYOG_rc); m=1/25; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.747359; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; positions_7nt_m4 versus MA1631.1_rc (ASCL1(var.2)_rc); m=2/25; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.686131; --gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; positions_7nt_m4 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=3/25; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.672317; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; positions_7nt_m4 versus MA1641.1_rc (MYF5_rc); m=4/25; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.665215; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1529.1_shift0 (NHLH2)
; positions_7nt_m4 versus MA1529.1 (NHLH2); m=5/25; ncol2=18; w=15; offset=0; strand=D; shift=0; score=0.658378; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0830.2_rc_shift2 (TCF4_rc)
; positions_7nt_m4 versus MA0830.2_rc (TCF4_rc); m=6/25; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.65464; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; positions_7nt_m4 versus MA0521.1_rc (Tcf12_rc); m=7/25; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.654071; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1485.1_shift2 (FERD3L)
; positions_7nt_m4 versus MA1485.1 (FERD3L); m=8/25; ncol2=14; w=13; offset=2; strand=D; shift=2; score=0.631768; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; positions_7nt_m4 versus MA0816.1_rc (Ascl2_rc); m=9/25; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.631144; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; positions_7nt_m4 versus MA0832.1_rc (Tcf21_rc); m=10/25; ncol2=14; w=13; offset=2; strand=R; shift=2; score=0.624113; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA1618.1_rc_shift2 (Ptf1a_rc)
; positions_7nt_m4 versus MA1618.1_rc (Ptf1a_rc); m=11/25; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.61553; --dmaaCATCTGtkh--- ; cor=; Ncor= a 0 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 c 0 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 g 0 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 t 0 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0

MA1100.2_shift4 (ASCL1)
; positions_7nt_m4 versus MA1100.2 (ASCL1); m=12/25; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.614046; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; positions_7nt_m4 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=13/25; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.608248; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; positions_7nt_m4 versus MA0048.2_rc (NHLH1_rc); m=14/25; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.607697; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; positions_7nt_m4 versus MA1472.1 (BHLHA15(var.2)); m=15/25; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.593018; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA0499.2_shift3 (MYOD1)
; positions_7nt_m4 versus MA0499.2 (MYOD1); m=16/25; ncol2=13; w=12; offset=3; strand=D; shift=3; score=0.585843; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; positions_7nt_m4 versus MA1648.1_rc (TCF12(var.2)_rc); m=17/25; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.576767; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; positions_7nt_m4 versus MA0522.3_rc (TCF3_rc); m=18/25; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.57079; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; positions_7nt_m4 versus MA1467.1 (ATOH1(var.2)); m=19/25; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.552026; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; positions_7nt_m4 versus MA0691.1_rc (TFAP4_rc); m=20/25; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.550391; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; positions_7nt_m4 versus MA0665.1_rc (MSC_rc); m=21/25; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.536519; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA0103.3_rc_shift3 (ZEB1_rc)
; positions_7nt_m4 versus MA0103.3_rc (ZEB1_rc); m=22/25; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.520274; ---sssCAGGTGss---- ; cor=; Ncor= a 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 0 0 0 c 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 0 0 0 g 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 0 0 0 t 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; positions_7nt_m4 versus MA0820.1 (FIGLA); m=23/25; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.489186; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

MA1558.1_shift4 (SNAI1)
; positions_7nt_m4 versus MA1558.1 (SNAI1); m=24/25; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.48672; ----drCAGGTGyr---- ; cor=; Ncor= a 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 0 c 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 0 g 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 0 t 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0 0

MA0667.1_shift4 (MYF6)
; positions_7nt_m4 versus MA0667.1 (MYF6); m=25/25; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.485417; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m41_shift3 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m41_shift3 (oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41)
; oligos_8nt_mkv5_m41 (oligos_8nt_mkv5_m41oligos_8nt_mkv5_m41); m=0 (reference); ncol1=12; shift=3; ncol=16; ---gdAACAGtTGyy- ; Alignment reference a 0 0 0 47 59 213 211 3 214 2 19 5 5 26 44 0 c 0 0 0 44 29 0 3 215 2 12 24 1 4 66 69 0 g 0 0 0 92 64 5 3 0 2 192 33 4 204 52 38 0 t 0 0 0 39 70 4 5 4 4 16 146 212 9 78 71 0

MA0499.2_rc_shift3 (MYOD1_rc)
; oligos_8nt_mkv5_m41 versus MA0499.2_rc (MYOD1_rc); m=1/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.74713; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0

MA0667.1_rc_shift5 (MYF6_rc)
; oligos_8nt_mkv5_m41 versus MA0667.1_rc (MYF6_rc); m=2/33; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.734661; -----RACAGyTGTT- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 c 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 g 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 t 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0

MA0091.1_shift3 (TAL1::TCF3)
; oligos_8nt_mkv5_m41 versus MA0091.1 (TAL1::TCF3); m=3/33; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.715295; ---mgAmCAKMTGkT- ; cor=; Ncor= a 0 0 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 c 0 0 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 g 0 0 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 t 0 0 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0

MA0745.2_rc_shift3 (SNAI2_rc)
; oligos_8nt_mkv5_m41 versus MA0745.2_rc (SNAI2_rc); m=4/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.707793; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0

MA0665.1_rc_shift5 (MSC_rc)
; oligos_8nt_mkv5_m41 versus MA0665.1_rc (MSC_rc); m=5/33; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.705745; -----AACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0

MA0832.1_shift3 (Tcf21)
; oligos_8nt_mkv5_m41 versus MA0832.1 (Tcf21); m=6/33; ncol2=14; w=12; offset=0; strand=D; shift=3; score=0.703095; ---ryAACAGCTGTTr ; cor=; Ncor= a 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 c 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 g 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 t 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0

MA1105.2_shift3 (GRHL2)
; oligos_8nt_mkv5_m41 versus MA1105.2 (GRHL2); m=7/33; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.70204; ---arAACAGGTTtk- ; cor=; Ncor= a 0 0 0 14483.0 17842.0 36467.0 37065.0 503.0 34024.0 2824.0 642.0 1878.0 1752.0 7061.0 8868.0 0 c 0 0 0 9741.0 6996.0 1147.0 712.0 40446.0 1543.0 581.0 987.0 2331.0 2000.0 9341.0 8528.0 0 g 0 0 0 9161.0 10776.0 2646.0 2841.0 609.0 485.0 37226.0 39624.0 748.0 1220.0 7961.0 10536.0 0 t 0 0 0 8493.0 6264.0 1618.0 1260.0 320.0 5826.0 1247.0 625.0 36921.0 36906.0 17515.0 13946.0 0

MA1467.1_shift5 (ATOH1(var.2))
; oligos_8nt_mkv5_m41 versus MA1467.1 (ATOH1(var.2)); m=8/33; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.696058; -----AACAGCTGTY- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0

MA0100.3_rc_shift5 (MYB_rc)
; oligos_8nt_mkv5_m41 versus MA0100.3_rc (MYB_rc); m=9/33; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.691505; -----kdCAGTTGvk- ; cor=; Ncor= a 0 0 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 c 0 0 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 g 0 0 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 t 0 0 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0

MA1642.1_shift3 (NEUROG2(var.2))
; oligos_8nt_mkv5_m41 versus MA1642.1 (NEUROG2(var.2)); m=10/33; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.682565; ---rrraCAGATGGyv ; cor=; Ncor= a 0 0 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 9464.0 c 0 0 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 9034.0 g 0 0 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 8709.0 t 0 0 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0 7184.0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; oligos_8nt_mkv5_m41 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=11/33; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.670608; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0

MA1485.1_rc_shift3 (FERD3L_rc)
; oligos_8nt_mkv5_m41 versus MA1485.1_rc (FERD3L_rc); m=12/33; ncol2=14; w=12; offset=0; strand=R; shift=3; score=0.670461; ---GTrACAGCTGkyr ; cor=; Ncor= a 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 c 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 g 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 t 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0

MA0691.1_shift5 (TFAP4)
; oligos_8nt_mkv5_m41 versus MA0691.1 (TFAP4); m=13/33; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.669358; -----AwCAGCTGwT- ; cor=; Ncor= a 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 c 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 g 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 t 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0

MA1472.1_shift5 (BHLHA15(var.2))
; oligos_8nt_mkv5_m41 versus MA1472.1 (BHLHA15(var.2)); m=14/33; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.667945; -----avCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0

MA0820.1_rc_shift5 (FIGLA_rc)
; oligos_8nt_mkv5_m41 versus MA0820.1_rc (FIGLA_rc); m=15/33; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.667697; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0

MA1621.1_rc_shift3 (Rbpjl_rc)
; oligos_8nt_mkv5_m41 versus MA1621.1_rc (Rbpjl_rc); m=16/33; ncol2=14; w=12; offset=0; strand=R; shift=3; score=0.664149; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0

MA1641.1_shift4 (MYF5)
; oligos_8nt_mkv5_m41 versus MA1641.1 (MYF5); m=17/33; ncol2=12; w=11; offset=1; strand=D; shift=4; score=0.663829; ----gvaCAGCTGtbc ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0

MA1619.1_shift4 (Ptf1a(var.2))
; oligos_8nt_mkv5_m41 versus MA1619.1 (Ptf1a(var.2)); m=18/33; ncol2=12; w=11; offset=1; strand=D; shift=4; score=0.654953; ----rmaCAGCTGtky ; cor=; Ncor= a 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 c 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 g 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 t 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0

MA1559.1_shift5 (SNAI3)
; oligos_8nt_mkv5_m41 versus MA1559.1 (SNAI3); m=19/33; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.651549; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0

MA0816.1_shift5 (Ascl2)
; oligos_8nt_mkv5_m41 versus MA0816.1 (Ascl2); m=20/33; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.644892; -----arCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 c 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 g 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 t 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0

MA0521.1_shift5 (Tcf12)
; oligos_8nt_mkv5_m41 versus MA0521.1 (Tcf12); m=21/33; ncol2=11; w=10; offset=2; strand=D; shift=5; score=0.634675; -----rRCAGCTGswg ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0

MA0500.2_rc_shift4 (MYOG_rc)
; oligos_8nt_mkv5_m41 versus MA0500.2_rc (MYOG_rc); m=22/33; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.625902; ----sarCAGCTGyts ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0

MA1570.1_shift5 (TFAP4(var.2))
; oligos_8nt_mkv5_m41 versus MA1570.1 (TFAP4(var.2)); m=23/33; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.621405; -----ahCAyrTGkt- ; cor=; Ncor= a 0 0 0 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 c 0 0 0 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 g 0 0 0 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 t 0 0 0 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0

MA1618.1_shift4 (Ptf1a)
; oligos_8nt_mkv5_m41 versus MA1618.1 (Ptf1a); m=24/33; ncol2=13; w=11; offset=1; strand=D; shift=4; score=0.616748; ----dmaCAGATGttk ; cor=; Ncor= a 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 c 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 g 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 t 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0

MA1638.1_shift5 (HAND2)
; oligos_8nt_mkv5_m41 versus MA1638.1 (HAND2); m=25/33; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.60414; -----amCAGATGby- ; cor=; Ncor= a 0 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 c 0 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 g 0 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 t 0 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0

MA1100.2_shift5 (ASCL1)
; oligos_8nt_mkv5_m41 versus MA1100.2 (ASCL1); m=26/33; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.602002; -----rrCAGCTGcy- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0

MA0744.2_shift0 (SCRT2)
; oligos_8nt_mkv5_m41 versus MA0744.2 (SCRT2); m=27/33; ncol2=16; w=12; offset=-3; strand=D; shift=0; score=0.588296; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0

MA1558.1_shift5 (SNAI1)
; oligos_8nt_mkv5_m41 versus MA1558.1 (SNAI1); m=28/33; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.587592; -----drCAGGTGyr- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0

MA1109.1_shift4 (NEUROD1)
; oligos_8nt_mkv5_m41 versus MA1109.1 (NEUROD1); m=29/33; ncol2=13; w=11; offset=1; strand=D; shift=4; score=0.581873; ----graCAGATGGyr ; cor=; Ncor= a 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 c 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 g 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 t 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0

MA0743.2_shift0 (SCRT1)
; oligos_8nt_mkv5_m41 versus MA0743.2 (SCRT1); m=30/33; ncol2=16; w=12; offset=-3; strand=D; shift=0; score=0.581053; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0

MA1647.1_rc_shift1 (PRDM4_rc)
; oligos_8nt_mkv5_m41 versus MA1647.1_rc (PRDM4_rc); m=31/33; ncol2=11; w=9; offset=-2; strand=R; shift=1; score=0.495958; -twGAAACAGhy---- ; cor=; Ncor= a 0 1799.0 2962.0 292.0 6811.0 6288.0 6889.0 39.0 5543.0 154.0 2123.0 1559.0 0 0 0 0 c 0 1344.0 726.0 129.0 111.0 393.0 82.0 6813.0 566.0 316.0 2079.0 2553.0 0 0 0 0 g 0 1532.0 1456.0 6353.0 138.0 405.0 137.0 110.0 286.0 6504.0 1012.0 1163.0 0 0 0 0 t 0 2580.0 2111.0 481.0 195.0 169.0 147.0 293.0 860.0 281.0 2041.0 1980.0 0 0 0 0

MA0607.1_rc_shift6 (Bhlha15_rc)
; oligos_8nt_mkv5_m41 versus MA0607.1_rc (Bhlha15_rc); m=32/33; ncol2=8; w=8; offset=3; strand=R; shift=6; score= 0.4806; ------aCATATGs-- ; cor=; Ncor= a 0 0 0 0 0 0 614.0 0.0 999.0 0.0 799.0 0.0 0.0 1.0 0 0 c 0 0 0 0 0 0 154.0 999.0 0.0 0.0 200.0 0.0 0.0 286.0 0 0 g 0 0 0 0 0 0 231.0 0.0 0.0 200.0 0.0 0.0 999.0 571.0 0 0 t 0 0 0 0 0 0 1.0 0.0 0.0 799.0 0.0 999.0 0.0 143.0 0 0

MA0087.1_rc_shift4 (Sox5_rc)
; oligos_8nt_mkv5_m41 versus MA0087.1_rc (Sox5_rc); m=33/33; ncol2=7; w=7; offset=1; strand=R; shift=4; score=0.442476; ----wAACAAT----- ; cor=; Ncor= a 0 0 0 0 8.0 21.0 22.0 0.0 23.0 22.0 0.0 0 0 0 0 0 c 0 0 0 0 4.0 0.0 0.0 22.0 0.0 1.0 0.0 0 0 0 0 0 g 0 0 0 0 3.0 1.0 1.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 8.0 1.0 0.0 1.0 0.0 0.0 23.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m42_shift9 ; 14 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m42_shift9 (oligos_6nt_mkv3_m42oligos_6nt_mkv3_m42)
; oligos_6nt_mkv3_m42 (oligos_6nt_mkv3_m42oligos_6nt_mkv3_m42); m=0 (reference); ncol1=10; shift=9; ncol=21; ---------rsATGCCAss-- ; Alignment reference a 0 0 0 0 0 0 0 0 0 144 115 471 0 0 0 0 471 86 94 0 0 c 0 0 0 0 0 0 0 0 0 116 180 0 1 0 471 470 0 120 160 0 0 g 0 0 0 0 0 0 0 0 0 120 134 0 0 471 0 1 0 185 142 0 0 t 0 0 0 0 0 0 0 0 0 91 42 0 470 0 0 0 0 80 75 0 0

MA0671.1_shift10 (NFIX)
; oligos_6nt_mkv3_m42 versus MA0671.1 (NFIX); m=1/13; ncol2=9; w=9; offset=1; strand=D; shift=10; score=0.744451; ----------sgtGCCArv-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 7951.0 7832.0 11279.0 132.0 3.0 0.0 32864.0 32864.0 8251.0 0 0 c 0 0 0 0 0 0 0 0 0 0 8810.0 6134.0 9695.0 186.0 32864.0 32864.0 2230.0 1356.0 9039.0 0 0 g 0 0 0 0 0 0 0 0 0 0 8725.0 10855.0 5911.0 32864.0 3257.0 0.0 180.0 12688.0 9135.0 0 0 t 0 0 0 0 0 0 0 0 0 0 7378.0 8043.0 32864.0 2539.0 29.0 0.0 110.0 2399.0 6439.0 0 0

MA0670.1_shift10 (NFIA)
; oligos_6nt_mkv3_m42 versus MA0670.1 (NFIA); m=2/13; ncol2=10; w=9; offset=1; strand=D; shift=10; score=0.656254; ----------ggTGCCAArw- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 22969.0 20706.0 0.0 0.0 0.0 0.0 89071.0 89418.0 23752.0 27709.0 0 c 0 0 0 0 0 0 0 0 0 0 22347.0 14274.0 0.0 0.0 93597.0 93394.0 0.0 0.0 21852.0 14439.0 0 g 0 0 0 0 0 0 0 0 0 0 24321.0 35089.0 0.0 98253.0 0.0 0.0 0.0 0.0 29423.0 16505.0 0 t 0 0 0 0 0 0 0 0 0 0 22282.0 23019.0 95496.0 0.0 0.0 0.0 0.0 0.0 17410.0 32052.0 0

MA0739.1_shift11 (Hic1)
; oligos_6nt_mkv3_m42 versus MA0739.1 (Hic1); m=3/13; ncol2=9; w=8; offset=2; strand=D; shift=11; score=0.652695; -----------rTGCCAaCc- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 6337.0 62.0 950.0 50.0 88.0 9008.0 6140.0 1220.0 1610.0 0 c 0 0 0 0 0 0 0 0 0 0 0 719.0 422.0 588.0 11007.0 11007.0 1999.0 1986.0 11007.0 4822.0 0 g 0 0 0 0 0 0 0 0 0 0 0 4670.0 73.0 11007.0 121.0 31.0 3.0 2267.0 1629.0 1884.0 0 t 0 0 0 0 0 0 0 0 0 0 0 666.0 11007.0 183.0 0.0 68.0 317.0 614.0 1488.0 2692.0 0

MA0809.2_shift7 (TEAD4)
; oligos_6nt_mkv3_m42 versus MA0809.2 (TEAD4); m=4/13; ncol2=12; w=10; offset=-2; strand=D; shift=7; score=0.604054; -------ycACATTCCAgs-- ; cor=; Ncor= a 0 0 0 0 0 0 0 18932.0 17306.0 61263.0 7543.0 74797.0 965.0 2673.0 1366.0 1314.0 61802.0 16617.0 19272.0 0 0 c 0 0 0 0 0 0 0 22343.0 26577.0 2414.0 66205.0 1218.0 1129.0 1176.0 72555.0 75066.0 3874.0 13864.0 20301.0 0 0 g 0 0 0 0 0 0 0 15111.0 15427.0 11265.0 3295.0 569.0 1025.0 2100.0 1580.0 212.0 1191.0 32220.0 22630.0 0 0 t 0 0 0 0 0 0 0 21700.0 18776.0 3144.0 1043.0 1502.0 74967.0 72137.0 2585.0 1494.0 11219.0 15385.0 15883.0 0 0

MA0738.1_shift11 (HIC2)
; oligos_6nt_mkv3_m42 versus MA0738.1 (HIC2); m=5/13; ncol2=9; w=8; offset=2; strand=D; shift=11; score=0.579852; -----------rTGCCMrsy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 2606.0 0.0 494.0 23.0 435.0 1466.0 2493.0 770.0 760.0 0 c 0 0 0 0 0 0 0 0 0 0 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 710.0 2200.0 1732.0 0 g 0 0 0 0 0 0 0 0 0 0 0 2285.0 0.0 4891.0 14.0 0.0 0.0 1290.0 1237.0 1001.0 0 t 0 0 0 0 0 0 0 0 0 0 0 367.0 4891.0 151.0 0.0 59.0 0.0 399.0 684.0 1398.0 0

MA0808.1_shift9 (TEAD3)
; oligos_6nt_mkv3_m42 versus MA0808.1 (TEAD3); m=6/13; ncol2=8; w=8; offset=0; strand=D; shift=9; score=0.579455; ---------rCATTCCw---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 12530.0 2524.0 21444.0 0.0 4566.0 0.0 0.0 21444.0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 66.0 18920.0 0.0 0.0 23.0 21444.0 21444.0 1039.0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 8913.0 441.0 0.0 0.0 969.0 0.0 0.0 8654.0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 1109.0 0.0 0.0 21444.0 16878.0 0.0 4.0 13663.0 0 0 0 0

MA0161.2_rc_shift10 (NFIC_rc)
; oligos_6nt_mkv3_m42 versus MA0161.2_rc (NFIC_rc); m=7/13; ncol2=11; w=9; offset=1; strand=R; shift=10; score=0.568448; ----------tsTGCCAAGwa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2791.0 2844.0 574.0 530.0 290.0 81.0 10745.0 10781.0 324.0 3488.0 3867.0 c 0 0 0 0 0 0 0 0 0 0 2760.0 3186.0 478.0 88.0 10973.0 11087.0 177.0 369.0 329.0 2086.0 2478.0 g 0 0 0 0 0 0 0 0 0 0 2712.0 2951.0 397.0 10725.0 121.0 129.0 333.0 303.0 10542.0 2137.0 2647.0 t 0 0 0 0 0 0 0 0 0 0 3344.0 2626.0 10158.0 264.0 223.0 310.0 352.0 154.0 412.0 3896.0 2615.0

MA0090.3_shift7 (TEAD1)
; oligos_6nt_mkv3_m42 versus MA0090.3 (TEAD1); m=8/13; ncol2=13; w=10; offset=-2; strand=D; shift=7; score=0.55423; -------hyACATTCCAGsm- ; cor=; Ncor= a 0 0 0 0 0 0 0 17689.0 16651.0 58030.0 6096.0 68106.0 535.0 4976.0 1348.0 702.0 57190.0 9124.0 13252.0 19194.0 0 c 0 0 0 0 0 0 0 19272.0 22059.0 1248.0 61276.0 646.0 700.0 622.0 66953.0 67635.0 1729.0 6215.0 20002.0 21358.0 0 g 0 0 0 0 0 0 0 14429.0 12053.0 9179.0 1923.0 946.0 646.0 1210.0 765.0 374.0 2051.0 47856.0 26525.0 16344.0 0 t 0 0 0 0 0 0 0 19008.0 19635.0 1941.0 1103.0 700.0 68517.0 63590.0 1332.0 1687.0 9428.0 7203.0 10619.0 13502.0 0

MA1527.1_shift2 (NFIC(var.2))
; oligos_6nt_mkv3_m42 versus MA1527.1 (NFIC(var.2)); m=9/13; ncol2=17; w=10; offset=-7; strand=D; shift=2; score=0.511161; --sTTGGCrysgTGCCArs-- ; cor=; Ncor= a 0 0 398.0 167.0 0.0 0.0 0.0 100.0 696.0 389.0 443.0 476.0 203.0 0.0 0.0 3.0 2118.0 1086.0 364.0 0 0 c 0 0 560.0 616.0 0.0 0.0 3.0 2118.0 268.0 705.0 580.0 382.0 340.0 0.0 2118.0 2118.0 0.0 19.0 695.0 0 0 g 0 0 761.0 65.0 5.0 2118.0 2118.0 0.0 694.0 492.0 678.0 881.0 97.0 2118.0 13.0 0.0 0.0 1032.0 647.0 0 0 t 0 0 399.0 2118.0 2118.0 0.0 0.0 0.0 461.0 531.0 417.0 379.0 2118.0 0.0 0.0 0.0 0.0 154.0 412.0 0 0

MA1528.1_shift2 (NFIX(var.2))
; oligos_6nt_mkv3_m42 versus MA1528.1 (NFIX(var.2)); m=10/13; ncol2=17; w=10; offset=-7; strand=D; shift=2; score=0.510138; --gtTGGCrysgTGCCArs-- ; cor=; Ncor= a 0 0 3182.0 4530.0 127.0 0.0 0.0 1819.0 7104.0 3125.0 3061.0 3423.0 1773.0 0.0 0.0 0.0 17346.0 8330.0 2858.0 0 0 c 0 0 4287.0 3912.0 231.0 0.0 0.0 17346.0 1890.0 5920.0 4769.0 2529.0 2300.0 0.0 17346.0 17346.0 1856.0 2165.0 5304.0 0 0 g 0 0 6640.0 3397.0 2386.0 17346.0 17346.0 0.0 5090.0 3846.0 5991.0 7942.0 1423.0 17346.0 0.0 0.0 63.0 9016.0 5740.0 0 0 t 0 0 3238.0 17346.0 17346.0 0.0 0.0 175.0 3262.0 4455.0 3525.0 3453.0 17346.0 459.0 0.0 0.0 314.0 3322.0 3443.0 0 0

MA0092.1_rc_shift11 (Hand1::Tcf3_rc)
; oligos_6nt_mkv3_m42 versus MA0092.1_rc (Hand1::Tcf3_rc); m=11/13; ncol2=10; w=8; offset=2; strand=R; shift=11; score=0.504441; -----------awkCCAGAys ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 16.0 10.0 5.0 1.0 0.0 29.0 1.0 24.0 4.0 7.0 c 0 0 0 0 0 0 0 0 0 0 0 4.0 3.0 1.0 25.0 29.0 0.0 0.0 1.0 15.0 10.0 g 0 0 0 0 0 0 0 0 0 0 0 4.0 0.0 14.0 3.0 0.0 0.0 28.0 2.0 0.0 8.0 t 0 0 0 0 0 0 0 0 0 0 0 5.0 16.0 9.0 0.0 0.0 0.0 0.0 2.0 10.0 4.0

MA0119.1_shift4 (NFIC::TLX1)
; oligos_6nt_mkv3_m42 versus MA0119.1 (NFIC::TLX1); m=12/13; ncol2=14; w=9; offset=-5; strand=D; shift=4; score=0.481377; ----TGGCAssrwGCCAA--- ; cor=; Ncor= a 0 0 0 0 0.0 0.0 0.0 0.0 14.0 2.0 2.0 7.0 4.0 0.0 0.0 0.0 16.0 14.0 0 0 0 c 0 0 0 0 0.0 0.0 0.0 16.0 1.0 8.0 8.0 1.0 3.0 0.0 16.0 16.0 0.0 0.0 0 0 0 g 0 0 0 0 0.0 16.0 16.0 0.0 0.0 5.0 4.0 5.0 2.0 16.0 0.0 0.0 0.0 1.0 0 0 0 t 0 0 0 0 16.0 0.0 0.0 0.0 1.0 1.0 2.0 3.0 7.0 0.0 0.0 0.0 0.0 1.0 0 0 0

MA1643.1_rc_shift0 (NFIB_rc)
; oligos_6nt_mkv3_m42 versus MA1643.1_rc (NFIB_rc); m=13/13; ncol2=21; w=10; offset=-9; strand=R; shift=0; score=0.416265; tdctTGGCAcmrTGCCAGgya ; cor=; Ncor= a 1050.0 1193.0 428.0 211.0 70.0 15.0 20.0 180.0 3083.0 468.0 1388.0 2175.0 544.0 18.0 16.0 11.0 4101.0 808.0 555.0 1098.0 1392.0 c 984.0 874.0 2969.0 1055.0 36.0 11.0 23.0 4191.0 451.0 2822.0 1149.0 608.0 175.0 27.0 4372.0 4389.0 162.0 193.0 526.0 1298.0 1023.0 g 1015.0 1193.0 467.0 161.0 373.0 4382.0 4357.0 31.0 181.0 532.0 792.0 1190.0 519.0 4223.0 12.0 11.0 20.0 3142.0 2911.0 839.0 946.0 t 1367.0 1156.0 552.0 2989.0 3937.0 8.0 16.0 14.0 701.0 594.0 1087.0 443.0 3178.0 148.0 16.0 5.0 133.0 273.0 424.0 1181.0 1055.0

One-to-n matrix alignment; reference matrix: positions_6nt_m3_shift1 ; 22 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m3_shift1 (positions_6nt_m3positions_6nt_m3)
; positions_6nt_m3 (positions_6nt_m3positions_6nt_m3); m=0 (reference); ncol1=15; shift=1; ncol=18; -sgcAGCAGCTGCags-- ; Alignment reference a 0 333 348 147 1021 152 4 1378 1 6 2 6 34 669 235 257 0 0 c 0 416 302 754 97 37 1397 10 2 1368 8 2 1249 274 341 498 0 0 g 0 430 568 342 205 1207 3 6 1400 28 6 1397 62 124 626 364 0 0 t 0 226 187 162 82 9 1 11 2 3 1389 0 60 338 203 286 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_6nt_m3 versus MA0500.2_rc (MYOG_rc); m=1/21; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.74261; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; positions_6nt_m3 versus MA1631.1_rc (ASCL1(var.2)_rc); m=2/21; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.689652; --gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; positions_6nt_m3 versus MA0830.2_rc (TCF4_rc); m=3/21; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.674113; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA0832.1_shift2 (Tcf21)
; positions_6nt_m3 versus MA0832.1 (Tcf21); m=4/21; ncol2=14; w=14; offset=1; strand=D; shift=2; score=0.671046; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA1529.1_shift0 (NHLH2)
; positions_6nt_m3 versus MA1529.1 (NHLH2); m=5/21; ncol2=18; w=15; offset=-1; strand=D; shift=0; score=0.662425; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0521.1_shift4 (Tcf12)
; positions_6nt_m3 versus MA0521.1 (Tcf12); m=6/21; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.656584; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; positions_6nt_m3 versus MA1619.1 (Ptf1a(var.2)); m=7/21; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.639244; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0816.1_shift4 (Ascl2)
; positions_6nt_m3 versus MA0816.1 (Ascl2); m=8/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.630769; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1641.1_shift3 (MYF5)
; positions_6nt_m3 versus MA1641.1 (MYF5); m=9/21; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.62976; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; positions_6nt_m3 versus MA0499.2_rc (MYOD1_rc); m=10/21; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.625234; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA1100.2_shift4 (ASCL1)
; positions_6nt_m3 versus MA1100.2 (ASCL1); m=11/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.618171; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; positions_6nt_m3 versus MA0048.2_rc (NHLH1_rc); m=12/21; ncol2=10; w=10; offset=3; strand=R; shift=4; score= 0.6082; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; positions_6nt_m3 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=13/21; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.599119; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; positions_6nt_m3 versus MA1472.1 (BHLHA15(var.2)); m=14/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.570632; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; positions_6nt_m3 versus MA1648.1_rc (TCF12(var.2)_rc); m=15/21; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.548095; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; positions_6nt_m3 versus MA0522.3_rc (TCF3_rc); m=16/21; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.540814; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; positions_6nt_m3 versus MA1467.1 (ATOH1(var.2)); m=17/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.524021; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; positions_6nt_m3 versus MA0691.1 (TFAP4); m=18/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.518488; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; positions_6nt_m3 versus MA0665.1_rc (MSC_rc); m=19/21; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.49994; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA1559.1_shift4 (SNAI3)
; positions_6nt_m3 versus MA1559.1 (SNAI3); m=20/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.498526; ----arCAGGTGya---- ; cor=; Ncor= a 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0

MA1558.1_shift4 (SNAI1)
; positions_6nt_m3 versus MA1558.1 (SNAI1); m=21/21; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.486991; ----drCAGGTGyr---- ; cor=; Ncor= a 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 0 c 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 0 g 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 0 t 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m31_shift0 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m31_shift0 (dyads_m31dyads_m31)
; dyads_m31 (dyads_m31dyads_m31); m=0 (reference); ncol1=15; shift=0; ncol=19; rsaCCAGCTGTCasc---- ; Alignment reference a 94 52 215 24 0 347 3 5 2 2 2 3 234 47 75 0 0 0 0 c 87 144 78 257 355 1 14 349 0 1 12 344 46 128 124 0 0 0 0 g 99 91 36 69 0 2 334 0 0 351 7 4 32 100 82 0 0 0 0 t 75 68 26 5 0 5 4 1 353 1 334 4 43 80 74 0 0 0 0

MA1485.1_shift0 (FERD3L)
; dyads_m31 versus MA1485.1 (FERD3L); m=1/33; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.740729; GyrmCAGCTGTyAC----- ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 0 0 0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 0 0 0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 0 0 0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0 0 0 0

MA0832.1_rc_shift0 (Tcf21_rc)
; dyads_m31 versus MA0832.1_rc (Tcf21_rc); m=2/33; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.722789; ryAACAGCTGTTry----- ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0 0

MA0499.2_shift1 (MYOD1)
; dyads_m31 versus MA0499.2 (MYOD1); m=3/33; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.703705; -cwgCACCTGTymy----- ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0 0 0

MA1641.1_rc_shift1 (MYF5_rc)
; dyads_m31 versus MA1641.1_rc (MYF5_rc); m=4/33; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.670741; -gvaCAGCTGtbc------ ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 0 0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 0 0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 0 0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0 0 0 0

MA1621.1_shift0 (Rbpjl)
; dyads_m31 versus MA1621.1 (Rbpjl); m=5/33; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.665242; svmaCACCTGtsyc----- ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0 0 0

MA1619.1_shift1 (Ptf1a(var.2))
; dyads_m31 versus MA1619.1 (Ptf1a(var.2)); m=6/33; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.663983; -rmaCAGCTGtky------ ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; dyads_m31 versus MA0521.1_rc (Tcf12_rc); m=7/33; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.661301; -cwsCAGCTGYy------- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0

MA1109.1_rc_shift0 (NEUROD1_rc)
; dyads_m31 versus MA1109.1_rc (NEUROD1_rc); m=8/33; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.659322; syrCCATCTGtyc------ ; cor=; Ncor= a 525.0 451.0 580.0 168.0 31.0 2157.0 21.0 90.0 18.0 12.0 47.0 298.0 566.0 0 0 0 0 0 0 c 628.0 599.0 418.0 1962.0 2231.0 19.0 77.0 2152.0 16.0 13.0 494.0 906.0 726.0 0 0 0 0 0 0 g 591.0 540.0 911.0 93.0 7.0 51.0 150.0 24.0 7.0 2240.0 452.0 323.0 429.0 0 0 0 0 0 0 t 538.0 692.0 373.0 59.0 13.0 55.0 2034.0 16.0 2241.0 17.0 1289.0 755.0 561.0 0 0 0 0 0 0

MA0500.2_shift1 (MYOG)
; dyads_m31 versus MA0500.2 (MYOG); m=9/33; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.646647; -sarCAGCTGyts------ ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0

MA1123.2_shift0 (TWIST1)
; dyads_m31 versus MA1123.2 (TWIST1); m=10/33; ncol2=13; w=13; offset=0; strand=D; shift=0; score=0.642996; awwCCAGATGtbt------ ; cor=; Ncor= a 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 6823.0 0 0 0 0 0 0 c 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 6561.0 0 0 0 0 0 0 g 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 6213.0 0 0 0 0 0 0 t 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0 7736.0 0 0 0 0 0 0

MA1642.1_rc_shift1 (NEUROG2(var.2)_rc)
; dyads_m31 versus MA1642.1_rc (NEUROG2(var.2)_rc); m=11/33; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.629989; -brCCATCTGtyyy----- ; cor=; Ncor= a 0 7184.0 9704.0 4904.0 484.0 32515.0 275.0 2806.0 159.0 237.0 1750.0 4721.0 8378.0 7535.0 0 0 0 0 0 c 0 8709.0 7581.0 24998.0 33422.0 323.0 418.0 30392.0 301.0 317.0 8039.0 11114.0 10123.0 10813.0 0 0 0 0 0 g 0 9034.0 10441.0 2966.0 205.0 904.0 952.0 793.0 211.0 33559.0 8154.0 6467.0 6843.0 7353.0 0 0 0 0 0 t 0 9464.0 6665.0 1523.0 280.0 649.0 32746.0 400.0 33720.0 278.0 16448.0 12089.0 9047.0 8690.0 0 0 0 0 0

MA1618.1_rc_shift0 (Ptf1a_rc)
; dyads_m31 versus MA1618.1_rc (Ptf1a_rc); m=12/33; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.628691; dmaaCATCTGtkh------ ; cor=; Ncor= a 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 0 0 0 c 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 0 0 0 g 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 0 0 0 t 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0 0 0 0

MA0745.2_shift1 (SNAI2)
; dyads_m31 versus MA0745.2 (SNAI2); m=13/33; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.618831; -aygCACCTGTmry----- ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 0 0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 0 0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 0 0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0 0 0 0

MA0796.1_rc_shift1 (TGIF1_rc)
; dyads_m31 versus MA0796.1_rc (TGIF1_rc); m=14/33; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.603868; -TGACAGCTGTCA------ ; cor=; Ncor= a 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 0 0 0 c 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 0 0 0 g 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 0 0 0 t 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0 0 0 0

MA1467.1_shift2 (ATOH1(var.2))
; dyads_m31 versus MA1467.1 (ATOH1(var.2)); m=15/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.599899; --AACAGCTGTY------- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0 0

MA1571.1_rc_shift1 (TGIF2LX_rc)
; dyads_m31 versus MA1571.1_rc (TGIF2LX_rc); m=16/33; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.596501; -TGACAgcTGTCA------ ; cor=; Ncor= a 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 0 0 0 0 c 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 0 0 0 0 g 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 0 0 0 0 t 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0 0 0 0 0

MA0797.1_rc_shift1 (TGIF2_rc)
; dyads_m31 versus MA0797.1_rc (TGIF2_rc); m=17/33; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.591926; -TGACAsCTGTCA------ ; cor=; Ncor= a 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 0 0 0 c 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 0 0 0 g 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 0 0 0 t 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0 0 0 0

MA1572.1_shift1 (TGIF2LY)
; dyads_m31 versus MA1572.1 (TGIF2LY); m=18/33; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.584685; -TGACAgcTGTCA------ ; cor=; Ncor= a 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 0 0 0 c 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 0 0 0 g 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 0 0 0 t 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0 0 0 0

MA1472.1_shift2 (BHLHA15(var.2))
; dyads_m31 versus MA1472.1 (BHLHA15(var.2)); m=19/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.577599; --avCAGCTGyy------- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0 0 0

MA0091.1_shift0 (TAL1::TCF3)
; dyads_m31 versus MA0091.1 (TAL1::TCF3); m=20/33; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.564085; mgAmCAKMTGkT------- ; cor=; Ncor= a 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 0 0 0 c 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 0 0 0 g 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 0 0 0 t 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0 0 0 0

MA0783.1_rc_shift1 (PKNOX2_rc)
; dyads_m31 versus MA0783.1_rc (PKNOX2_rc); m=21/33; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.562635; -TGACAsCTGTCA------ ; cor=; Ncor= a 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 0 0 0 c 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 0 0 0 g 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 0 0 0 t 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0 0 0 0

MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; dyads_m31 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=22/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.554246; --csCAGCTGsg------- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0 0

MA0816.1_shift2 (Ascl2)
; dyads_m31 versus MA0816.1 (Ascl2); m=23/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.538755; --arCAGCTGyy------- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0 0

MA0665.1_rc_shift2 (MSC_rc)
; dyads_m31 versus MA0665.1_rc (MSC_rc); m=24/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.535902; --AACAGCTGTT------- ; cor=; Ncor= a 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 0 0 0 c 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 0 0 0 g 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 0 0 0 t 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0 0 0 0

MA1100.2_rc_shift2 (ASCL1_rc)
; dyads_m31 versus MA1100.2_rc (ASCL1_rc); m=25/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.529427; --rgCAGCTGyy------- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0 0

MA0691.1_shift2 (TFAP4)
; dyads_m31 versus MA0691.1 (TFAP4); m=26/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.527983; --AwCAGCTGwT------- ; cor=; Ncor= a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 0 0 0 c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 0 0 0 g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 0 0 0 t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0 0 0 0

MA0667.1_shift2 (MYF6)
; dyads_m31 versus MA0667.1 (MYF6); m=27/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.515538; --AACArCTGTY------- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0 0 0 0

MA0820.1_shift2 (FIGLA)
; dyads_m31 versus MA0820.1 (FIGLA); m=28/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.504414; --wmCACCTGkw------- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0 0 0

MA0774.1_rc_shift6 (MEIS2_rc)
; dyads_m31 versus MA0774.1_rc (MEIS2_rc); m=29/33; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.482856; ------sCTGTCAa----- ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 0 0 0 0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 0 0 0 0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 0 0 0 0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0 0 0 0 0

MA0048.2_shift2 (NHLH1)
; dyads_m31 versus MA0048.2 (NHLH1); m=30/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.474192; --cGCAGCTGCk------- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0 0 0

MA0775.1_rc_shift6 (MEIS3_rc)
; dyads_m31 versus MA0775.1_rc (MEIS3_rc); m=31/33; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.464538; ------scTGTCAw----- ; cor=; Ncor= a 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 0 0 0 0 c 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 0 0 0 0 g 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 0 0 0 0 t 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0 0 0 0 0

MA0498.2_rc_shift7 (MEIS1_rc)
; dyads_m31 versus MA0498.2_rc (MEIS1_rc); m=32/33; ncol2=7; w=7; offset=7; strand=R; shift=7; score=0.425072; -------cTGTCAw----- ; cor=; Ncor= a 0 0 0 0 0 0 0 15106.0 3861.0 1155.0 0.0 0.0 77159.0 24921.0 0 0 0 0 0 c 0 0 0 0 0 0 0 29965.0 9263.0 0.0 672.0 77159.0 3174.0 9714.0 0 0 0 0 0 g 0 0 0 0 0 0 0 14864.0 0.0 77159.0 2903.0 1249.0 5575.0 18797.0 0 0 0 0 0 t 0 0 0 0 0 0 0 17224.0 77159.0 0.0 77159.0 0.0 8690.0 23727.0 0 0 0 0 0

MA0782.2_rc_shift4 (PKNOX1_rc)
; dyads_m31 versus MA0782.2_rc (PKNOX1_rc); m=33/33; ncol2=15; w=11; offset=4; strand=R; shift=4; score=0.424758; ----yagCTGTCAcTCAwa ; cor=; Ncor= a 0 0 0 0 9877.0 12900.0 6042.0 5092.0 2629.0 886.0 720.0 691.0 36918.0 7333.0 1196.0 1043.0 29794.0 10355.0 11050.0 c 0 0 0 0 10296.0 9060.0 9128.0 27367.0 2408.0 580.0 2459.0 37713.0 1027.0 26182.0 1330.0 36106.0 3322.0 9535.0 9599.0 g 0 0 0 0 9268.0 9386.0 16341.0 4759.0 944.0 37846.0 410.0 1004.0 878.0 4123.0 678.0 1160.0 1625.0 9828.0 9503.0 t 0 0 0 0 10522.0 8617.0 8452.0 2745.0 33982.0 651.0 36374.0 555.0 1140.0 2325.0 36759.0 1654.0 5222.0 10245.0 9811.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m35_shift0 ; 29 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m35_shift0 (oligos_6nt_mkv3_m35oligos_6nt_mkv3_m35)
; oligos_6nt_mkv3_m35 (oligos_6nt_mkv3_m35oligos_6nt_mkv3_m35); m=0 (reference); ncol1=16; shift=0; ncol=16; vsagACAGCTGTccys ; Alignment reference a 306 273 507 176 945 1 1201 7 4 3 2 49 68 242 207 214 c 318 367 197 220 80 1203 4 13 1172 2 1 115 720 555 406 355 g 369 403 261 744 131 0 2 1184 26 5 1202 94 212 190 291 341 t 214 164 242 67 51 3 0 3 5 1197 2 949 207 220 303 297

MA0832.1_shift1 (Tcf21)
; oligos_6nt_mkv3_m35 versus MA0832.1 (Tcf21); m=1/28; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.737483; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0

MA1641.1_shift2 (MYF5)
; oligos_6nt_mkv3_m35 versus MA1641.1 (MYF5); m=2/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.722514; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0

MA1619.1_rc_shift2 (Ptf1a(var.2)_rc)
; oligos_6nt_mkv3_m35 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=3/28; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.71106; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA1621.1_rc_shift1 (Rbpjl_rc)
; oligos_6nt_mkv3_m35 versus MA1621.1_rc (Rbpjl_rc); m=4/28; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.69627; -grsaCAGGTGtkbs- ; cor=; Ncor= a 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 c 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 g 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 t 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0

MA1485.1_shift1 (FERD3L)
; oligos_6nt_mkv3_m35 versus MA1485.1 (FERD3L); m=5/28; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.69241; -GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0500.2_shift2 (MYOG)
; oligos_6nt_mkv3_m35 versus MA0500.2 (MYOG); m=6/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.661221; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA0499.2_shift2 (MYOD1)
; oligos_6nt_mkv3_m35 versus MA0499.2 (MYOD1); m=7/28; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.643138; --cwgCACCTGTymy- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA1618.1_shift2 (Ptf1a)
; oligos_6nt_mkv3_m35 versus MA1618.1 (Ptf1a); m=8/28; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.638321; --dmaCAGATGttkh- ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0

MA0796.1_shift2 (TGIF1)
; oligos_6nt_mkv3_m35 versus MA0796.1 (TGIF1); m=9/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.63535; --TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 c 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 g 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 t 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0

MA1571.1_rc_shift2 (TGIF2LX_rc)
; oligos_6nt_mkv3_m35 versus MA1571.1_rc (TGIF2LX_rc); m=10/28; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.633523; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0

MA1572.1_rc_shift2 (TGIF2LY_rc)
; oligos_6nt_mkv3_m35 versus MA1572.1_rc (TGIF2LY_rc); m=11/28; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.622737; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 0 c 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 0 g 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 0 t 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0 0

MA0797.1_shift2 (TGIF2)
; oligos_6nt_mkv3_m35 versus MA0797.1 (TGIF2); m=12/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.620956; --TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 0 c 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 0 g 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 0 t 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0 0

MA1620.1_rc_shift2 (Ptf1a(var.3)_rc)
; oligos_6nt_mkv3_m35 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=13/28; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.611202; --rmaCAGGTGtky-- ; cor=; Ncor= a 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0

MA0521.1_shift3 (Tcf12)
; oligos_6nt_mkv3_m35 versus MA0521.1 (Tcf12); m=14/28; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.609613; ---rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; oligos_6nt_mkv3_m35 versus MA1467.1_rc (ATOH1(var.2)_rc); m=15/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.592486; ---RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0

MA0783.1_shift2 (PKNOX2)
; oligos_6nt_mkv3_m35 versus MA0783.1 (PKNOX2); m=16/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.591336; --TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 0 c 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 0 g 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 0 t 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0 0

MA0745.2_shift2 (SNAI2)
; oligos_6nt_mkv3_m35 versus MA0745.2 (SNAI2); m=17/28; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.590758; --aygCACCTGTmry- ; cor=; Ncor= a 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA1109.1_shift2 (NEUROD1)
; oligos_6nt_mkv3_m35 versus MA1109.1 (NEUROD1); m=18/28; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.571554; --graCAGATGGyrs- ; cor=; Ncor= a 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 0 c 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 0 g 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 0 t 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; oligos_6nt_mkv3_m35 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=19/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.568843; ---rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0

MA1635.1_rc_shift3 (BHLHE22(var.2)_rc)
; oligos_6nt_mkv3_m35 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=20/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.551335; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA0665.1_rc_shift3 (MSC_rc)
; oligos_6nt_mkv3_m35 versus MA0665.1_rc (MSC_rc); m=21/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.550396; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; oligos_6nt_mkv3_m35 versus MA0667.1_rc (MYF6_rc); m=22/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.534779; ---RACAGyTGTT--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0

MA1100.2_shift3 (ASCL1)
; oligos_6nt_mkv3_m35 versus MA1100.2 (ASCL1); m=23/28; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.53325; ---rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0691.1_rc_shift3 (TFAP4_rc)
; oligos_6nt_mkv3_m35 versus MA0691.1_rc (TFAP4_rc); m=24/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.530082; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA0816.1_rc_shift3 (Ascl2_rc)
; oligos_6nt_mkv3_m35 versus MA0816.1_rc (Ascl2_rc); m=25/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.528888; ---rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; oligos_6nt_mkv3_m35 versus MA0820.1_rc (FIGLA_rc); m=26/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.47799; ---wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0

MA0048.2_rc_shift3 (NHLH1_rc)
; oligos_6nt_mkv3_m35 versus MA0048.2_rc (NHLH1_rc); m=27/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.474018; ---mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA1638.1_shift3 (HAND2)
; oligos_6nt_mkv3_m35 versus MA1638.1 (HAND2); m=28/28; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.440495; ---amCAGATGby--- ; cor=; Ncor= a 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 0 0 c 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 0 0 g 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 0 0 t 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_7nt_m1_shift0 ; 19 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m1_shift0 (local_words_7nt_m1local_words_7nt_m1)
; local_words_7nt_m1 (local_words_7nt_m1local_words_7nt_m1); m=0 (reference); ncol1=18; shift=0; ncol=18; crGCAGCAGCTGCTGCyg ; Alignment reference a 79 128 44 17 351 14 1 427 3 0 21 0 6 54 26 32 95 77 c 185 104 50 353 26 11 451 5 9 441 1 2 423 23 57 328 126 113 g 112 127 328 58 24 423 2 1 442 10 5 451 11 26 355 50 103 183 t 78 95 32 26 53 6 0 21 0 3 427 1 14 351 16 44 130 81

MA1529.1_rc_shift0 (NHLH2_rc)
; local_words_7nt_m1 versus MA1529.1_rc (NHLH2_rc); m=1/18; ncol2=18; w=18; offset=0; strand=R; shift=0; score=0.735237; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_7nt_m1 versus MA1485.1_rc (FERD3L_rc); m=2/18; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.581391; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; local_words_7nt_m1 versus MA0500.2_rc (MYOG_rc); m=3/18; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.580157; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0832.1_shift2 (Tcf21)
; local_words_7nt_m1 versus MA0832.1 (Tcf21); m=4/18; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.556926; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; local_words_7nt_m1 versus MA1631.1_rc (ASCL1(var.2)_rc); m=5/18; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.528896; --gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_7nt_m1 versus MA0816.1_rc (Ascl2_rc); m=6/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.52761; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; local_words_7nt_m1 versus MA0830.2_rc (TCF4_rc); m=7/18; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.514905; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA0521.1_shift4 (Tcf12)
; local_words_7nt_m1 versus MA0521.1 (Tcf12); m=8/18; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.509421; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_7nt_m1 versus MA0048.2_rc (NHLH1_rc); m=9/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.498097; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_7nt_m1 versus MA1100.2 (ASCL1); m=10/18; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.496164; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_7nt_m1 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=11/18; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.483236; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1641.1_shift3 (MYF5)
; local_words_7nt_m1 versus MA1641.1 (MYF5); m=12/18; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.47694; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_7nt_m1 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=13/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.473601; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_7nt_m1 versus MA1472.1 (BHLHA15(var.2)); m=14/18; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.46336; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; local_words_7nt_m1 versus MA0691.1_rc (TFAP4_rc); m=15/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.439825; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; local_words_7nt_m1 versus MA1648.1_rc (TCF12(var.2)_rc); m=16/18; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.433057; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; local_words_7nt_m1 versus MA0665.1_rc (MSC_rc); m=17/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.423228; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; local_words_7nt_m1 versus MA1467.1_rc (ATOH1(var.2)_rc); m=18/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.417037; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m9_shift1 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m9_shift1 (oligos_6nt_mkv3_m9oligos_6nt_mkv3_m9)
; oligos_6nt_mkv3_m9 (oligos_6nt_mkv3_m9oligos_6nt_mkv3_m9); m=0 (reference); ncol1=12; shift=1; ncol=13; -rraAACCACAgc ; Alignment reference a 0 116 123 258 357 365 29 12 367 19 370 94 93 c 0 83 95 64 5 4 347 363 5 356 4 82 123 g 0 117 99 30 8 5 5 3 11 7 7 148 86 t 0 70 69 34 16 12 5 8 3 4 5 62 84

MA0002.2_rc_shift3 (RUNX1_rc)
; oligos_6nt_mkv3_m9 versus MA0002.2_rc (RUNX1_rc); m=1/5; ncol2=11; w=10; offset=2; strand=R; shift=3; score=0.734957; ---waaCCACAra ; cor=; Ncor= a 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 c 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 g 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 t 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0

MA0684.2_shift2 (RUNX3)
; oligos_6nt_mkv3_m9 versus MA0684.2 (RUNX3); m=2/5; ncol2=12; w=11; offset=1; strand=D; shift=2; score=0.709959; --awAACCTCAaw ; cor=; Ncor= a 0 0 7768.0 9558.0 19136.0 26243.0 427.0 495.0 6357.0 611.0 26121.0 16137.0 8778.0 c 0 0 6083.0 5007.0 2662.0 315.0 26293.0 26208.0 419.0 26015.0 414.0 3077.0 5994.0 g 0 0 6685.0 3547.0 3500.0 431.0 198.0 385.0 1911.0 390.0 338.0 4696.0 5642.0 t 0 0 6841.0 9265.0 2079.0 388.0 459.0 289.0 18690.0 361.0 504.0 3467.0 6963.0

MA0511.2_shift3 (RUNX2)
; oligos_6nt_mkv3_m9 versus MA0511.2 (RUNX2); m=3/5; ncol2=9; w=9; offset=2; strand=D; shift=3; score=0.641506; ---wAACCRCAa- ; cor=; Ncor= a 0 0 0 3872.0 6621.0 6621.0 0.0 0.0 1914.0 0.0 6621.0 4202.0 0 c 0 0 0 1092.0 556.0 325.0 6621.0 6621.0 36.0 6621.0 476.0 677.0 0 g 0 0 0 326.0 1215.0 0.0 0.0 0.0 4707.0 0.0 458.0 1134.0 0 t 0 0 0 2748.0 582.0 0.0 0.0 0.0 120.0 0.0 191.0 607.0 0

MA0479.1_shift0 (FOXH1)
; oligos_6nt_mkv3_m9 versus MA0479.1 (FOXH1); m=4/5; ncol2=11; w=10; offset=-1; strand=D; shift=0; score=0.590275; ybsAATMCACA-- ; cor=; Ncor= a 939.0 1578.0 973.0 8211.0 7547.0 0.0 2374.0 1414.0 8211.0 0.0 7138.0 0 0 c 2840.0 2333.0 3261.0 0.0 0.0 0.0 5773.0 6797.0 0.0 8211.0 0.0 0 0 g 1490.0 2137.0 3156.0 0.0 229.0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 t 2942.0 2163.0 821.0 0.0 435.0 8211.0 64.0 0.0 0.0 0.0 1073.0 0 0

MA0483.1_shift3 (Gfi1b)
; oligos_6nt_mkv3_m9 versus MA0483.1 (Gfi1b); m=5/5; ncol2=11; w=10; offset=2; strand=D; shift=3; score=0.571934; ---aAATCwCwGC ; cor=; Ncor= a 0 0 0 1124.0 1761.0 1759.0 0.0 0.0 1033.0 61.0 1116.0 57.0 142.0 c 0 0 0 438.0 0.0 0.0 338.0 1761.0 21.0 1312.0 0.0 1.0 1328.0 g 0 0 0 104.0 0.0 2.0 28.0 0.0 0.0 388.0 1.0 1676.0 76.0 t 0 0 0 95.0 0.0 0.0 1395.0 0.0 707.0 0.0 644.0 27.0 215.0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m34_shift0 ; 19 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m34_shift0 (oligos_8nt_mkv5_m34oligos_8nt_mkv5_m34)
; oligos_8nt_mkv5_m34 (oligos_8nt_mkv5_m34oligos_8nt_mkv5_m34); m=0 (reference); ncol1=12; shift=0; ncol=18; crGCAGCAGCtG------ ; Alignment reference a 110 224 1 0 565 1 1 560 1 0 121 45 0 0 0 0 0 0 c 263 81 0 578 9 2 580 13 2 584 66 51 0 0 0 0 0 0 g 121 173 583 6 10 580 2 11 579 0 71 442 0 0 0 0 0 0 t 90 106 0 0 0 1 1 0 2 0 326 46 0 0 0 0 0 0

MA0500.2_shift0 (MYOG)
; oligos_8nt_mkv5_m34 versus MA0500.2 (MYOG); m=1/18; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.732522; sarCAGCTGyts------ ; cor=; Ncor= a 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 c 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 g 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 t 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0

MA1646.1_shift0 (OSR2)
; oligos_8nt_mkv5_m34 versus MA1646.1 (OSR2); m=2/18; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.713681; amaCAGAAGChr------ ; cor=; Ncor= a 4437.0 4244.0 8520.0 254.0 13599.0 216.0 11678.0 13725.0 416.0 666.0 4386.0 4048.0 0 0 0 0 0 0 c 3641.0 4206.0 2221.0 13937.0 197.0 229.0 703.0 288.0 170.0 12109.0 4274.0 3304.0 0 0 0 0 0 0 g 3246.0 3006.0 2117.0 406.0 737.0 14206.0 901.0 516.0 13982.0 841.0 2266.0 4726.0 0 0 0 0 0 0 t 3484.0 3352.0 1950.0 211.0 275.0 157.0 1526.0 279.0 240.0 1192.0 3882.0 2730.0 0 0 0 0 0 0

MA1628.1_shift1 (Zic1::Zic2)
; oligos_8nt_mkv5_m34 versus MA1628.1 (Zic1::Zic2); m=3/18; ncol2=11; w=11; offset=1; strand=D; shift=1; score=0.657841; -cvCAGCAGGsr------ ; cor=; Ncor= a 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 0 0 0 0 0 c 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 0 0 0 0 0 g 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 0 0 0 0 0 t 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0 0 0 0 0 0

MA0816.1_rc_shift1 (Ascl2_rc)
; oligos_8nt_mkv5_m34 versus MA0816.1_rc (Ascl2_rc); m=4/18; ncol2=10; w=10; offset=1; strand=R; shift=1; score=0.646819; -rrCAGCTGyt------- ; cor=; Ncor= a 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 0 0 0 c 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 0 0 0 g 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 0 0 0 t 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0 0 0 0

MA0048.2_shift1 (NHLH1)
; oligos_8nt_mkv5_m34 versus MA0048.2 (NHLH1); m=5/18; ncol2=10; w=10; offset=1; strand=D; shift=1; score=0.628544; -cGCAGCTGCk------- ; cor=; Ncor= a 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 0 0 c 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 0 0 g 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 0 0 t 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0 0 0

MA1100.2_rc_shift1 (ASCL1_rc)
; oligos_8nt_mkv5_m34 versus MA1100.2_rc (ASCL1_rc); m=6/18; ncol2=10; w=10; offset=1; strand=R; shift=1; score=0.622828; -rgCAGCTGyy------- ; cor=; Ncor= a 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 0 c 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 0 g 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 0 t 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0 0

MA1635.1_rc_shift1 (BHLHE22(var.2)_rc)
; oligos_8nt_mkv5_m34 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=7/18; ncol2=10; w=10; offset=1; strand=R; shift=1; score=0.588245; -csCAGCTGsg------- ; cor=; Ncor= a 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0 0 c 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0 0 g 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0 0 t 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0 0

MA1529.1_shift0 (NHLH2)
; oligos_8nt_mkv5_m34 versus MA1529.1 (NHLH2); m=8/18; ncol2=18; w=12; offset=0; strand=D; shift=0; score=0.521904; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0521.1_rc_shift3 (Tcf12_rc)
; oligos_8nt_mkv5_m34 versus MA0521.1_rc (Tcf12_rc); m=9/18; ncol2=11; w=9; offset=3; strand=R; shift=3; score=0.517754; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1485.1_shift2 (FERD3L)
; oligos_8nt_mkv5_m34 versus MA1485.1 (FERD3L); m=10/18; ncol2=14; w=10; offset=2; strand=D; shift=2; score=0.508265; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0691.1_shift4 (TFAP4)
; oligos_8nt_mkv5_m34 versus MA0691.1 (TFAP4); m=11/18; ncol2=10; w=8; offset=4; strand=D; shift=4; score=0.467661; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; oligos_8nt_mkv5_m34 versus MA0665.1_rc (MSC_rc); m=12/18; ncol2=10; w=8; offset=4; strand=R; shift=4; score=0.464267; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; oligos_8nt_mkv5_m34 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=13/18; ncol2=10; w=8; offset=4; strand=R; shift=4; score=0.462778; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA0832.1_shift2 (Tcf21)
; oligos_8nt_mkv5_m34 versus MA0832.1 (Tcf21); m=14/18; ncol2=14; w=10; offset=2; strand=D; shift=2; score=0.461366; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; oligos_8nt_mkv5_m34 versus MA1467.1 (ATOH1(var.2)); m=15/18; ncol2=10; w=8; offset=4; strand=D; shift=4; score=0.459512; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; oligos_8nt_mkv5_m34 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=16/18; ncol2=12; w=9; offset=3; strand=R; shift=3; score=0.434067; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; oligos_8nt_mkv5_m34 versus MA1641.1_rc (MYF5_rc); m=17/18; ncol2=12; w=9; offset=3; strand=R; shift=3; score=0.433297; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA0667.1_shift4 (MYF6)
; oligos_8nt_mkv5_m34 versus MA0667.1 (MYF6); m=18/18; ncol2=10; w=8; offset=4; strand=D; shift=4; score=0.421225; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m1_shift0 ; 29 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m1_shift0 (oligos_6nt_mkv3_m1oligos_6nt_mkv3_m1)
; oligos_6nt_mkv3_m1 (oligos_6nt_mkv3_m1oligos_6nt_mkv3_m1); m=0 (reference); ncol1=16; shift=0; ncol=16; vsagACAGCTGTctsb ; Alignment reference a 294 272 455 159 898 1 1128 5 3 0 2 48 61 233 151 198 c 305 353 186 204 80 1132 4 20 1107 3 0 111 711 262 358 336 g 337 359 261 712 110 0 3 1107 20 4 1132 80 203 186 355 306 t 199 151 233 60 47 2 0 3 5 1128 1 896 160 454 271 295

MA0832.1_shift1 (Tcf21)
; oligos_6nt_mkv3_m1 versus MA0832.1 (Tcf21); m=1/28; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.732415; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0

MA1641.1_shift2 (MYF5)
; oligos_6nt_mkv3_m1 versus MA1641.1 (MYF5); m=2/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.720483; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; oligos_6nt_mkv3_m1 versus MA1619.1 (Ptf1a(var.2)); m=3/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.709872; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA1621.1_rc_shift1 (Rbpjl_rc)
; oligos_6nt_mkv3_m1 versus MA1621.1_rc (Rbpjl_rc); m=4/28; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.69406; -grsaCAGGTGtkbs- ; cor=; Ncor= a 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 c 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 g 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 t 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; oligos_6nt_mkv3_m1 versus MA1485.1_rc (FERD3L_rc); m=5/28; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.687079; -GTrACAGCTGkyrC- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0

MA0500.2_shift2 (MYOG)
; oligos_6nt_mkv3_m1 versus MA0500.2 (MYOG); m=6/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.658795; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA0499.2_rc_shift1 (MYOD1_rc)
; oligos_6nt_mkv3_m1 versus MA0499.2_rc (MYOD1_rc); m=7/28; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.641732; -rkrACAGGTGcwg-- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0

MA0796.1_shift2 (TGIF1)
; oligos_6nt_mkv3_m1 versus MA0796.1 (TGIF1); m=8/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.640843; --TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 c 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 g 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 t 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0

MA1571.1_shift2 (TGIF2LX)
; oligos_6nt_mkv3_m1 versus MA1571.1 (TGIF2LX); m=9/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.640421; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 c 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 g 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 t 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0

MA1618.1_shift2 (Ptf1a)
; oligos_6nt_mkv3_m1 versus MA1618.1 (Ptf1a); m=10/28; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.634692; --dmaCAGATGttkh- ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0

MA1572.1_rc_shift2 (TGIF2LY_rc)
; oligos_6nt_mkv3_m1 versus MA1572.1_rc (TGIF2LY_rc); m=11/28; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.630364; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 0 c 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 0 g 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 0 t 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0 0

MA0797.1_shift2 (TGIF2)
; oligos_6nt_mkv3_m1 versus MA0797.1 (TGIF2); m=12/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.627052; --TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 0 c 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 0 g 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 0 t 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0 0

MA1620.1_shift2 (Ptf1a(var.3))
; oligos_6nt_mkv3_m1 versus MA1620.1 (Ptf1a(var.3)); m=13/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.610571; --rmaCACCTGtky-- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0

MA0521.1_shift3 (Tcf12)
; oligos_6nt_mkv3_m1 versus MA0521.1 (Tcf12); m=14/28; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.606281; ---rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA0783.1_shift2 (PKNOX2)
; oligos_6nt_mkv3_m1 versus MA0783.1 (PKNOX2); m=15/28; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.596604; --TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 0 c 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 0 g 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 0 t 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0 0

MA0745.2_rc_shift1 (SNAI2_rc)
; oligos_6nt_mkv3_m1 versus MA0745.2_rc (SNAI2_rc); m=16/28; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.589958; -rykACAGGTGcrt-- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; oligos_6nt_mkv3_m1 versus MA1467.1_rc (ATOH1(var.2)_rc); m=17/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.589245; ---RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0

MA1109.1_shift2 (NEUROD1)
; oligos_6nt_mkv3_m1 versus MA1109.1 (NEUROD1); m=18/28; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.569275; --graCAGATGGyrs- ; cor=; Ncor= a 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 0 c 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 0 g 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 0 t 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; oligos_6nt_mkv3_m1 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=19/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.565362; ---rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; oligos_6nt_mkv3_m1 versus MA1635.1 (BHLHE22(var.2)); m=20/28; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.548616; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0

MA0665.1_shift3 (MSC)
; oligos_6nt_mkv3_m1 versus MA0665.1 (MSC); m=21/28; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.546128; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; oligos_6nt_mkv3_m1 versus MA1100.2_rc (ASCL1_rc); m=22/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.530809; ---rgCAGCTGyy--- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; oligos_6nt_mkv3_m1 versus MA0667.1_rc (MYF6_rc); m=23/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.530686; ---RACAGyTGTT--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0

MA0691.1_shift3 (TFAP4)
; oligos_6nt_mkv3_m1 versus MA0691.1 (TFAP4); m=24/28; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.52532; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0

MA0816.1_shift3 (Ascl2)
; oligos_6nt_mkv3_m1 versus MA0816.1 (Ascl2); m=25/28; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.52397; ---arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; oligos_6nt_mkv3_m1 versus MA0820.1_rc (FIGLA_rc); m=26/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.473531; ---wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0

MA0048.2_shift3 (NHLH1)
; oligos_6nt_mkv3_m1 versus MA0048.2 (NHLH1); m=27/28; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.47048; ---cGCAGCTGCk--- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0

MA1638.1_rc_shift3 (HAND2_rc)
; oligos_6nt_mkv3_m1 versus MA1638.1_rc (HAND2_rc); m=28/28; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.438164; ---rvCATCTGkt--- ; cor=; Ncor= a 0 0 0 7783.0 8498.0 49.0 27962.0 23.0 85.0 4.0 70.0 3155.0 7120.0 0 0 0 c 0 0 0 6108.0 8878.0 29851.0 31.0 38.0 30144.0 647.0 132.0 6994.0 7463.0 0 0 0 g 0 0 0 10227.0 7690.0 149.0 2276.0 30.0 42.0 410.0 30062.0 11298.0 5564.0 0 0 0 t 0 0 0 6165.0 5217.0 234.0 14.0 30192.0 12.0 29222.0 19.0 8836.0 10136.0 0 0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m6_shift2 ; 30 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m6_shift2 (positions_7nt_m6positions_7nt_m6)
; positions_7nt_m6 (positions_7nt_m6positions_7nt_m6); m=0 (reference); ncol1=16; shift=2; ncol=18; --gsrACAGCTGCtgcbs ; Alignment reference a 0 0 405 347 793 1304 3 1778 11 9 46 4 29 304 241 303 316 368 c 0 0 441 536 372 126 1773 0 20 1745 8 2 1668 202 347 698 502 500 g 0 0 666 567 501 292 2 4 1753 25 0 1780 30 127 995 399 509 544 t 0 0 274 336 120 64 8 4 2 7 1732 0 59 1153 203 386 459 374

MA0832.1_shift2 (Tcf21)
; positions_7nt_m6 versus MA0832.1 (Tcf21); m=1/29; ncol2=14; w=14; offset=0; strand=D; shift=2; score=0.732079; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_7nt_m6 versus MA0500.2_rc (MYOG_rc); m=2/29; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.695093; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; positions_7nt_m6 versus MA1485.1_rc (FERD3L_rc); m=3/29; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.690978; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; positions_7nt_m6 versus MA0499.2_rc (MYOD1_rc); m=4/29; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.68617; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA1529.1_rc_shift0 (NHLH2_rc)
; positions_7nt_m6 versus MA1529.1_rc (NHLH2_rc); m=5/29; ncol2=18; w=16; offset=-2; strand=R; shift=0; score=0.656532; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA1619.1_shift3 (Ptf1a(var.2))
; positions_7nt_m6 versus MA1619.1 (Ptf1a(var.2)); m=6/29; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.65434; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1641.1_shift3 (MYF5)
; positions_7nt_m6 versus MA1641.1 (MYF5); m=7/29; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.653773; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA0521.1_shift4 (Tcf12)
; positions_7nt_m6 versus MA0521.1 (Tcf12); m=8/29; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.645464; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1621.1_rc_shift2 (Rbpjl_rc)
; positions_7nt_m6 versus MA1621.1_rc (Rbpjl_rc); m=9/29; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.621235; --grsaCAGGTGtkbs-- ; cor=; Ncor= a 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 0 c 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 0 g 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 0 t 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; positions_7nt_m6 versus MA1631.1 (ASCL1(var.2)); m=10/29; ncol2=13; w=13; offset=1; strand=D; shift=3; score= 0.6162; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0745.2_rc_shift2 (SNAI2_rc)
; positions_7nt_m6 versus MA0745.2_rc (SNAI2_rc); m=11/29; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.606966; --rykACAGGTGcrt--- ; cor=; Ncor= a 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 c 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 g 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 t 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0

MA1618.1_shift3 (Ptf1a)
; positions_7nt_m6 versus MA1618.1 (Ptf1a); m=12/29; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.600496; ---dmaCAGATGttkh-- ; cor=; Ncor= a 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 0 c 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 0 g 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 0 t 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0 0

MA0816.1_shift4 (Ascl2)
; positions_7nt_m6 versus MA0816.1 (Ascl2); m=13/29; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.593879; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; positions_7nt_m6 versus MA0830.2_rc (TCF4_rc); m=14/29; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.591881; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; positions_7nt_m6 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=15/29; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.565794; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; positions_7nt_m6 versus MA1100.2_rc (ASCL1_rc); m=16/29; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.562731; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; positions_7nt_m6 versus MA1635.1 (BHLHE22(var.2)); m=17/29; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.559435; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; positions_7nt_m6 versus MA0048.2 (NHLH1); m=18/29; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.547432; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; positions_7nt_m6 versus MA0691.1 (TFAP4); m=19/29; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.53979; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; positions_7nt_m6 versus MA1467.1_rc (ATOH1(var.2)_rc); m=20/29; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.538782; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0665.1_shift4 (MSC)
; positions_7nt_m6 versus MA0665.1 (MSC); m=21/29; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.538663; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA1620.1_shift3 (Ptf1a(var.3))
; positions_7nt_m6 versus MA1620.1 (Ptf1a(var.3)); m=22/29; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.537518; ---rmaCACCTGtky--- ; cor=; Ncor= a 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 c 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 g 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 t 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0

MA0091.1_shift2 (TAL1::TCF3)
; positions_7nt_m6 versus MA0091.1 (TAL1::TCF3); m=23/29; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.535179; --mgAmCAKMTGkT---- ; cor=; Ncor= a 0 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 c 0 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 g 0 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 t 0 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; positions_7nt_m6 versus MA1648.1 (TCF12(var.2)); m=24/29; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.524826; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift4 (TCF3)
; positions_7nt_m6 versus MA0522.3 (TCF3); m=25/29; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.520203; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; positions_7nt_m6 versus MA0667.1_rc (MYF6_rc); m=26/29; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.502551; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0820.1_rc_shift4 (FIGLA_rc)
; positions_7nt_m6 versus MA0820.1_rc (FIGLA_rc); m=27/29; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.474101; ----wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

MA1559.1_shift4 (SNAI3)
; positions_7nt_m6 versus MA1559.1 (SNAI3); m=28/29; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.461095; ----arCAGGTGya---- ; cor=; Ncor= a 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0

MA1558.1_rc_shift4 (SNAI1_rc)
; positions_7nt_m6 versus MA1558.1_rc (SNAI1_rc); m=29/29; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.452023; ----yrCACCTGyh---- ; cor=; Ncor= a 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m28_shift2 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m28_shift2 (oligos_7nt_mkv4_m28oligos_7nt_mkv4_m28)
; oligos_7nt_mkv4_m28 (oligos_7nt_mkv4_m28oligos_7nt_mkv4_m28); m=0 (reference); ncol1=12; shift=2; ncol=17; --ssGGGCTGGAss--- ; Alignment reference a 0 0 27 41 0 0 2 7 0 2 0 153 42 38 0 0 0 c 0 0 88 74 6 7 0 198 13 1 0 22 71 61 0 0 0 g 0 0 63 67 209 206 208 7 25 211 214 33 70 74 0 0 0 t 0 0 37 33 0 2 5 3 177 1 1 7 32 42 0 0 0

MA1513.1_rc_shift2 (KLF15_rc)
; oligos_7nt_mkv4_m28 versus MA1513.1_rc (KLF15_rc); m=1/4; ncol2=11; w=11; offset=0; strand=R; shift=2; score=0.729473; --sgGGGCGGGgs---- ; cor=; Ncor= a 0 0 2165.0 1602.0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 1744.0 0 0 0 0 c 0 0 3124.0 1934.0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 5538.0 0 0 0 0 g 0 0 5013.0 6267.0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 2903.0 0 0 0 0 t 0 0 1067.0 1566.0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 1184.0 0 0 0 0

MA0471.2_shift2 (E2F6)
; oligos_7nt_mkv4_m28 versus MA0471.2 (E2F6); m=2/4; ncol2=13; w=12; offset=0; strand=D; shift=2; score=0.686914; --grrGGCGGGAArs-- ; cor=; Ncor= a 0 0 7296.0 8379.0 9537.0 2110.0 266.0 3856.0 1173.0 338.0 354.0 29337.0 25725.0 8995.0 7616.0 0 0 c 0 0 8075.0 7405.0 5102.0 1148.0 837.0 26424.0 539.0 434.0 834.0 1171.0 1595.0 7410.0 8477.0 0 0 g 0 0 12358.0 11649.0 11562.0 29387.0 31790.0 693.0 30573.0 31973.0 31614.0 2322.0 5021.0 12530.0 11405.0 0 0 t 0 0 5369.0 5665.0 6897.0 453.0 205.0 2125.0 813.0 353.0 296.0 268.0 757.0 4163.0 5600.0 0 0

MA0516.2_rc_shift0 (SP2_rc)
; oligos_7nt_mkv4_m28 versus MA0516.2_rc (SP2_rc); m=3/4; ncol2=17; w=12; offset=-2; strand=R; shift=0; score=0.505378; rrGkGGGCGGGrCTTAk ; cor=; Ncor= a 352.0 503.0 101.0 17.0 27.0 7.0 18.0 45.0 12.0 8.0 0.0 327.0 43.0 67.0 180.0 608.0 106.0 c 88.0 0.0 1.0 22.0 0.0 26.0 0.0 780.0 22.0 13.0 1.0 8.0 791.0 33.0 0.0 57.0 123.0 g 203.0 221.0 679.0 390.0 774.0 793.0 795.0 52.0 788.0 786.0 774.0 456.0 127.0 84.0 76.0 171.0 308.0 t 150.0 109.0 22.0 402.0 23.0 5.0 0.0 82.0 4.0 16.0 14.0 34.0 54.0 753.0 613.0 53.0 256.0

MA0597.1_rc_shift1 (THAP1_rc)
; oligos_7nt_mkv4_m28 versus MA0597.1_rc (THAP1_rc); m=4/4; ncol2=9; w=8; offset=-1; strand=R; shift=1; score=0.455606; -trmKGGCar------- ; cor=; Ncor= a 0 32.0 57.0 58.0 4.0 1.0 10.0 42.0 125.0 61.0 0 0 0 0 0 0 0 c 0 17.0 41.0 77.0 1.0 0.0 0.0 137.0 12.0 27.0 0 0 0 0 0 0 0 g 0 34.0 71.0 17.0 136.0 195.0 182.0 0.0 47.0 93.0 0 0 0 0 0 0 0 t 0 116.0 30.0 47.0 58.0 3.0 7.0 20.0 15.0 18.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m14_shift2 ; 23 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m14_shift2 (dyads_m14dyads_m14)
; dyads_m14 (dyads_m14dyads_m14); m=0 (reference); ncol1=15; shift=2; ncol=17; --cyGCCCCaCCCCtsc ; Alignment reference a 0 0 22 31 7 0 1 5 1 91 1 1 0 2 11 15 19 c 0 0 64 41 9 133 134 122 134 2 129 130 134 123 19 48 66 g 0 0 28 30 113 1 1 5 0 30 5 2 1 5 29 49 27 t 0 0 22 34 7 2 0 4 1 13 1 3 1 6 77 24 24

MA0039.4_shift3 (KLF4)
; dyads_m14 versus MA0039.4 (KLF4); m=1/22; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.728814; ---ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0

MA1107.2_shift2 (KLF9)
; dyads_m14 versus MA1107.2 (KLF9); m=2/22; ncol2=16; w=15; offset=0; strand=D; shift=2; score=0.670013; --crgCCACACCCAChy ; cor=; Ncor= a 0 0 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 c 0 0 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 g 0 0 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 t 0 0 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0

MA1653.1_shift3 (ZNF148)
; dyads_m14 versus MA1653.1 (ZNF148); m=3/22; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.653278; ---ysCCCCTCCCcc-- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0

MA0746.2_shift3 (SP3)
; dyads_m14 versus MA0746.2 (SP3); m=4/22; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.644391; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0

MA0516.2_shift0 (SP2)
; dyads_m14 versus MA0516.2 (SP2); m=5/22; ncol2=17; w=15; offset=-2; strand=D; shift=0; score=0.641079; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0

MA0753.2_shift2 (ZNF740)
; dyads_m14 versus MA0753.2 (ZNF740); m=6/22; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.632813; --cyrCCCCCCCCAc-- ; cor=; Ncor= a 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 0 c 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 0 g 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 0 t 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0 0

MA0599.1_shift4 (KLF5)
; dyads_m14 versus MA0599.1 (KLF5); m=7/22; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.623761; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA0685.1_shift1 (SP4)
; dyads_m14 versus MA0685.1 (SP4); m=8/22; ncol2=17; w=15; offset=-1; strand=D; shift=1; score=0.621521; -ywrGCCACGCCCmCty ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0

MA0079.4_shift1 (SP1)
; dyads_m14 versus MA0079.4 (SP1); m=9/22; ncol2=15; w=14; offset=-1; strand=D; shift=1; score=0.619542; -ywrRCCACGCCCmCh- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0

MA1513.1_shift4 (KLF15)
; dyads_m14 versus MA1513.1 (KLF15); m=10/22; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.616589; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0

MA1522.1_shift3 (MAZ)
; dyads_m14 versus MA1522.1 (MAZ); m=11/22; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.597577; ---ssCCCCTCCcc--- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0

MA1515.1_shift3 (KLF2)
; dyads_m14 versus MA1515.1 (KLF2); m=12/22; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.594823; ---srCCmCrCCCw--- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0

MA1564.1_shift4 (SP9)
; dyads_m14 versus MA1564.1 (SP9); m=13/22; ncol2=12; w=12; offset=2; strand=D; shift=4; score=0.589309; ----rcCmCGCCCmcy- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0

MA1511.1_shift4 (KLF10)
; dyads_m14 versus MA1511.1 (KLF10); m=14/22; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.584801; ----gmCACrCCCmy-- ; cor=; Ncor= a 0 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 c 0 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 g 0 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 t 0 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0

MA0741.1_shift4 (KLF16)
; dyads_m14 versus MA0741.1 (KLF16); m=15/22; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.58252; ----gmCMCgCCCMC-- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0

MA0493.1_shift3 (Klf1)
; dyads_m14 versus MA0493.1 (Klf1); m=16/22; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.576404; ---rrCCACACCCw--- ; cor=; Ncor= a 0 0 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 c 0 0 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 g 0 0 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0

MA0747.1_shift4 (SP8)
; dyads_m14 versus MA0747.1 (SP8); m=17/22; ncol2=12; w=12; offset=2; strand=D; shift=4; score=0.565825; ----rmCACgCCCmCy- ; cor=; Ncor= a 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 c 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 g 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 t 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0

MA1517.1_shift3 (KLF6)
; dyads_m14 versus MA1517.1 (KLF6); m=18/22; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.546456; ---srcCACRCCCm--- ; cor=; Ncor= a 0 0 0 443.0 1035.0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 c 0 0 0 624.0 490.0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 g 0 0 0 626.0 1157.0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 t 0 0 0 499.0 136.0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0

MA1512.1_shift4 (KLF11)
; dyads_m14 versus MA1512.1 (KLF11); m=19/22; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.518637; ----gcCACGCCCmC-- ; cor=; Ncor= a 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 c 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 g 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 t 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0

MA1516.1_shift3 (KLF3)
; dyads_m14 versus MA1516.1 (KLF3); m=20/22; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.518421; ---grCCrCGCCCw--- ; cor=; Ncor= a 0 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 0 c 0 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 0 g 0 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 0 t 0 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0 0

MA1578.1_shift6 (VEZF1)
; dyads_m14 versus MA1578.1 (VEZF1); m=21/22; ncol2=10; w=10; offset=4; strand=D; shift=6; score=0.487221; ------CCCCCCmytw- ; cor=; Ncor= a 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 c 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 g 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 t 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0

MA1630.1_rc_shift1 (Znf281_rc)
; dyads_m14 versus MA1630.1_rc (Znf281_rc); m=22/22; ncol2=11; w=10; offset=-1; strand=R; shift=1; score=0.449348; -CcTCCCCCAcc----- ; cor=; Ncor= a 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 0 0 0 0 0 c 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 0 0 0 0 0 g 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 0 0 0 0 0 t 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m7_shift0 ; 26 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m7_shift0 (dyads_m7dyads_m7)
; dyads_m7 (dyads_m7dyads_m7); m=0 (reference); ncol1=16; shift=0; ncol=16; sstGACAGCTGTCass ; Alignment reference a 61 63 36 13 238 0 276 3 3 0 1 7 5 168 31 56 c 74 88 26 14 12 278 3 13 261 1 1 23 248 50 98 89 g 89 98 50 248 23 1 1 261 13 3 278 12 14 26 88 74 t 56 31 168 5 7 1 0 3 3 276 0 238 13 36 63 61

MA0796.1_rc_shift2 (TGIF1_rc)
; dyads_m7 versus MA0796.1_rc (TGIF1_rc); m=1/25; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.727575; --TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 c 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 g 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 t 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0

MA1571.1_shift2 (TGIF2LX)
; dyads_m7 versus MA1571.1 (TGIF2LX); m=2/25; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.722121; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 c 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 g 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 t 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0

MA0797.1_rc_shift2 (TGIF2_rc)
; dyads_m7 versus MA0797.1_rc (TGIF2_rc); m=3/25; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.717224; --TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 c 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 g 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 t 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0

MA1572.1_rc_shift2 (TGIF2LY_rc)
; dyads_m7 versus MA1572.1_rc (TGIF2LY_rc); m=4/25; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.713478; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 0 c 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 0 g 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 0 t 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; dyads_m7 versus MA1485.1_rc (FERD3L_rc); m=5/25; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.690422; -GTrACAGCTGkyrC- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0

MA0783.1_shift2 (PKNOX2)
; dyads_m7 versus MA0783.1 (PKNOX2); m=6/25; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.689343; --TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 0 c 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 0 g 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 0 t 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0 0

MA0832.1_rc_shift1 (Tcf21_rc)
; dyads_m7 versus MA0832.1_rc (Tcf21_rc); m=7/25; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.673398; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA1641.1_rc_shift2 (MYF5_rc)
; dyads_m7 versus MA1641.1_rc (MYF5_rc); m=8/25; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.661289; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA1619.1_rc_shift2 (Ptf1a(var.2)_rc)
; dyads_m7 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=9/25; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.642667; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA1621.1_rc_shift1 (Rbpjl_rc)
; dyads_m7 versus MA1621.1_rc (Rbpjl_rc); m=10/25; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.64139; -grsaCAGGTGtkbs- ; cor=; Ncor= a 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 c 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 g 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 t 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0

MA0499.2_rc_shift1 (MYOD1_rc)
; dyads_m7 versus MA0499.2_rc (MYOD1_rc); m=11/25; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.610092; -rkrACAGGTGcwg-- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0

MA0500.2_shift2 (MYOG)
; dyads_m7 versus MA0500.2 (MYOG); m=12/25; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.594698; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA1618.1_rc_shift1 (Ptf1a_rc)
; dyads_m7 versus MA1618.1_rc (Ptf1a_rc); m=13/25; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.579145; -dmaaCATCTGtkh-- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0

MA1467.1_shift3 (ATOH1(var.2))
; dyads_m7 versus MA1467.1 (ATOH1(var.2)); m=14/25; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.569347; ---AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA0521.1_shift3 (Tcf12)
; dyads_m7 versus MA0521.1 (Tcf12); m=15/25; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.561453; ---rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA1620.1_shift2 (Ptf1a(var.3))
; dyads_m7 versus MA1620.1 (Ptf1a(var.3)); m=16/25; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.560416; --rmaCACCTGtky-- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; dyads_m7 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=17/25; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.526541; ---rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0

MA0665.1_shift3 (MSC)
; dyads_m7 versus MA0665.1 (MSC); m=18/25; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.507177; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; dyads_m7 versus MA1635.1 (BHLHE22(var.2)); m=19/25; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.504401; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; dyads_m7 versus MA1100.2_rc (ASCL1_rc); m=20/25; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.500859; ---rgCAGCTGyy--- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; dyads_m7 versus MA0667.1_rc (MYF6_rc); m=21/25; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.500074; ---RACAGyTGTT--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0

MA0816.1_shift3 (Ascl2)
; dyads_m7 versus MA0816.1 (Ascl2); m=22/25; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.483122; ---arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA0691.1_rc_shift3 (TFAP4_rc)
; dyads_m7 versus MA0691.1_rc (TFAP4_rc); m=23/25; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.476823; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA0774.1_shift1 (MEIS2)
; dyads_m7 versus MA0774.1 (MEIS2); m=24/25; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.445348; -tTGACAGs------- ; cor=; Ncor= a 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 0 c 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 0 g 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 0 t 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0 0

MA0775.1_shift1 (MEIS3)
; dyads_m7 versus MA0775.1 (MEIS3); m=25/25; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.427006; -wTGACAgs------- ; cor=; Ncor= a 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 0 c 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 0 g 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 0 t 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m19_shift3 ; 35 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m19_shift3 (local_words_8nt_m19local_words_8nt_m19)
; local_words_8nt_m19 (local_words_8nt_m19local_words_8nt_m19); m=0 (reference); ncol1=15; shift=3; ncol=18; ---sggtGACAGCTGmss ; Alignment reference a 0 0 0 157 190 118 69 22 750 5 764 2 7 2 0 256 155 164 c 0 0 0 229 176 184 53 12 2 758 4 1 740 0 7 225 196 247 g 0 0 0 226 265 398 134 735 16 6 1 762 20 2 762 138 248 231 t 0 0 0 158 139 70 514 1 2 1 1 5 3 766 1 151 171 128

MA0499.2_rc_shift5 (MYOD1_rc)
; local_words_8nt_m19 versus MA0499.2_rc (MYOD1_rc); m=1/34; ncol2=13; w=13; offset=2; strand=R; shift=5; score=0.727384; -----rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0

MA1641.1_shift6 (MYF5)
; local_words_8nt_m19 versus MA1641.1 (MYF5); m=2/34; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.703096; ------gvaCAGCTGtbc ; cor=; Ncor= a 0 0 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 0 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 0 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0

MA1619.1_shift6 (Ptf1a(var.2))
; local_words_8nt_m19 versus MA1619.1 (Ptf1a(var.2)); m=3/34; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.695838; ------rmaCAGCTGtky ; cor=; Ncor= a 0 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 c 0 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 g 0 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 t 0 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0

MA1485.1_rc_shift5 (FERD3L_rc)
; local_words_8nt_m19 versus MA1485.1_rc (FERD3L_rc); m=4/34; ncol2=14; w=13; offset=2; strand=R; shift=5; score=0.684054; -----GTrACAGCTGkyr ; cor=; Ncor= a 0 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 c 0 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 g 0 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 t 0 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0

MA0521.1_shift7 (Tcf12)
; local_words_8nt_m19 versus MA0521.1 (Tcf12); m=5/34; ncol2=11; w=11; offset=4; strand=D; shift=7; score=0.677975; -------rRCAGCTGswg ; cor=; Ncor= a 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0

MA0500.2_rc_shift6 (MYOG_rc)
; local_words_8nt_m19 versus MA0500.2_rc (MYOG_rc); m=6/34; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.668983; ------sarCAGCTGyts ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 c 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 g 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 t 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0

MA0796.1_shift6 (TGIF1)
; local_words_8nt_m19 versus MA0796.1 (TGIF1); m=7/34; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.662792; ------TGACAGCTGTCA ; cor=; Ncor= a 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 c 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 g 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 t 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0

MA1571.1_rc_shift6 (TGIF2LX_rc)
; local_words_8nt_m19 versus MA1571.1_rc (TGIF2LX_rc); m=8/34; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.659819; ------TGACAgcTGTCA ; cor=; Ncor= a 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 c 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 g 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 t 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0

MA0797.1_shift6 (TGIF2)
; local_words_8nt_m19 versus MA0797.1 (TGIF2); m=9/34; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.651376; ------TGACAGsTGTCA ; cor=; Ncor= a 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 c 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 g 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 t 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0

MA1572.1_rc_shift6 (TGIF2LY_rc)
; local_words_8nt_m19 versus MA1572.1_rc (TGIF2LY_rc); m=10/34; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.649324; ------TGACAgcTGTCA ; cor=; Ncor= a 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 c 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 g 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 t 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0

MA0745.2_rc_shift5 (SNAI2_rc)
; local_words_8nt_m19 versus MA0745.2_rc (SNAI2_rc); m=11/34; ncol2=13; w=13; offset=2; strand=R; shift=5; score=0.64905; -----rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0

MA0832.1_shift5 (Tcf21)
; local_words_8nt_m19 versus MA0832.1 (Tcf21); m=12/34; ncol2=14; w=13; offset=2; strand=D; shift=5; score=0.62195; -----ryAACAGCTGTTr ; cor=; Ncor= a 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 c 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 g 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 t 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0

MA0783.1_shift6 (PKNOX2)
; local_words_8nt_m19 versus MA0783.1 (PKNOX2); m=13/34; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.618414; ------TGACAGsTGTCA ; cor=; Ncor= a 0 0 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 c 0 0 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 g 0 0 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 t 0 0 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0

MA1467.1_rc_shift7 (ATOH1(var.2)_rc)
; local_words_8nt_m19 versus MA1467.1_rc (ATOH1(var.2)_rc); m=14/34; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.602083; -------RACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 c 0 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 g 0 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 t 0 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0

MA1621.1_rc_shift5 (Rbpjl_rc)
; local_words_8nt_m19 versus MA1621.1_rc (Rbpjl_rc); m=15/34; ncol2=14; w=13; offset=2; strand=R; shift=5; score=0.596746; -----grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0

MA1593.1_shift6 (ZNF317)
; local_words_8nt_m19 versus MA1593.1 (ZNF317); m=16/34; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.595375; ------wrACAGCAGAyw ; cor=; Ncor= a 0 0 0 0 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 c 0 0 0 0 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 g 0 0 0 0 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 t 0 0 0 0 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0

MA1620.1_rc_shift6 (Ptf1a(var.3)_rc)
; local_words_8nt_m19 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=17/34; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.589191; ------rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0

MA1472.1_rc_shift7 (BHLHA15(var.2)_rc)
; local_words_8nt_m19 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=18/34; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.575887; -------rrCAGCTGbt- ; cor=; Ncor= a 0 0 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 c 0 0 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 g 0 0 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 t 0 0 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0

MA1635.1_shift7 (BHLHE22(var.2))
; local_words_8nt_m19 versus MA1635.1 (BHLHE22(var.2)); m=19/34; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.571019; -------csCAGCTGsg- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0

MA1100.2_rc_shift7 (ASCL1_rc)
; local_words_8nt_m19 versus MA1100.2_rc (ASCL1_rc); m=20/34; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.55072; -------rgCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 c 0 0 0 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 g 0 0 0 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 t 0 0 0 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0

MA1618.1_shift6 (Ptf1a)
; local_words_8nt_m19 versus MA1618.1 (Ptf1a); m=21/34; ncol2=13; w=12; offset=3; strand=D; shift=6; score=0.541027; ------dmaCAGATGttk ; cor=; Ncor= a 0 0 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 c 0 0 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 g 0 0 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 t 0 0 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0

MA0691.1_shift7 (TFAP4)
; local_words_8nt_m19 versus MA0691.1 (TFAP4); m=22/34; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.540316; -------AwCAGCTGwT- ; cor=; Ncor= a 0 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 c 0 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 g 0 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 t 0 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0

MA0816.1_rc_shift7 (Ascl2_rc)
; local_words_8nt_m19 versus MA0816.1_rc (Ascl2_rc); m=23/34; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.537167; -------rrCAGCTGyt- ; cor=; Ncor= a 0 0 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 c 0 0 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 g 0 0 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 t 0 0 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0

MA0665.1_shift7 (MSC)
; local_words_8nt_m19 versus MA0665.1 (MSC); m=24/34; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.537149; -------AACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 c 0 0 0 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 g 0 0 0 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 t 0 0 0 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0

MA1109.1_shift6 (NEUROD1)
; local_words_8nt_m19 versus MA1109.1 (NEUROD1); m=25/34; ncol2=13; w=12; offset=3; strand=D; shift=6; score=0.529303; ------graCAGATGGyr ; cor=; Ncor= a 0 0 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 c 0 0 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 g 0 0 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 t 0 0 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0

MA0667.1_rc_shift7 (MYF6_rc)
; local_words_8nt_m19 versus MA0667.1_rc (MYF6_rc); m=26/34; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.51611; -------RACAGyTGTT- ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 c 0 0 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 g 0 0 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 t 0 0 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0

MA0048.2_rc_shift7 (NHLH1_rc)
; local_words_8nt_m19 versus MA0048.2_rc (NHLH1_rc); m=27/34; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.50016; -------mGCAGCTGCg- ; cor=; Ncor= a 0 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 c 0 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 g 0 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 t 0 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0

MA0820.1_rc_shift7 (FIGLA_rc)
; local_words_8nt_m19 versus MA0820.1_rc (FIGLA_rc); m=28/34; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.489146; -------wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0

MA0774.1_shift5 (MEIS2)
; local_words_8nt_m19 versus MA0774.1 (MEIS2); m=29/34; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.474754; -----tTGACAGs----- ; cor=; Ncor= a 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 c 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 g 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 t 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0

MA0782.2_shift0 (PKNOX1)
; local_words_8nt_m19 versus MA0782.2 (PKNOX1); m=30/34; ncol2=15; w=12; offset=-3; strand=D; shift=0; score=0.47419; twTGAgTGACAGctr--- ; cor=; Ncor= a 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 0 0 c 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 0 0 g 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 0 0 t 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0 0 0

MA0100.3_rc_shift7 (MYB_rc)
; local_words_8nt_m19 versus MA0100.3_rc (MYB_rc); m=31/34; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.469535; -------kdCAGTTGvk- ; cor=; Ncor= a 0 0 0 0 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 c 0 0 0 0 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 g 0 0 0 0 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 t 0 0 0 0 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0

MA0775.1_shift5 (MEIS3)
; local_words_8nt_m19 versus MA0775.1 (MEIS3); m=32/34; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.458443; -----wTGACAgs----- ; cor=; Ncor= a 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 c 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 g 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 t 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0

MA0498.2_shift5 (MEIS1)
; local_words_8nt_m19 versus MA0498.2 (MEIS1); m=33/34; ncol2=7; w=7; offset=2; strand=D; shift=5; score=0.416621; -----wTGACAg------ ; cor=; Ncor= a 0 0 0 0 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 0 0 c 0 0 0 0 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 0 0 g 0 0 0 0 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 0 0 t 0 0 0 0 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0 0 0

MA0067.1_rc_shift3 (Pax2_rc)
; local_words_8nt_m19 versus MA0067.1_rc (Pax2_rc); m=34/34; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.410339; ---vmrTGAcw------- ; cor=; Ncor= a 0 0 0 8.0 10.0 11.0 1.0 2.0 26.0 2.0 9.0 0 0 0 0 0 0 0 c 0 0 0 11.0 19.0 1.0 3.0 1.0 0.0 21.0 5.0 0 0 0 0 0 0 0 g 0 0 0 11.0 0.0 17.0 1.0 28.0 2.0 1.0 7.0 0 0 0 0 0 0 0 t 0 0 0 1.0 2.0 2.0 26.0 0.0 3.0 7.0 10.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m3_shift0 ; 17 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m3_shift0 (positions_7nt_m3positions_7nt_m3)
; positions_7nt_m3 (positions_7nt_m3positions_7nt_m3); m=0 (reference); ncol1=19; shift=0; ncol=19; ssgcAGCAGCTGCwgctgs ; Alignment reference a 175 214 198 79 652 39 2 863 2 1 20 4 8 379 88 93 130 148 145 c 326 265 177 536 69 13 901 9 4 885 10 0 857 155 137 556 204 222 336 g 241 287 410 203 113 853 3 11 902 20 11 904 18 100 597 138 163 378 258 t 166 142 123 90 74 3 2 25 0 2 867 0 25 274 86 121 411 160 169

MA1529.1_shift0 (NHLH2)
; positions_7nt_m3 versus MA1529.1 (NHLH2); m=1/16; ncol2=18; w=18; offset=0; strand=D; shift=0; score=0.727016; ggGyMGCAGCTGCGyCmc- ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0 0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_7nt_m3 versus MA0500.2_rc (MYOG_rc); m=2/16; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.57158; ---sarCAGCTGyts---- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; positions_7nt_m3 versus MA1631.1_rc (ASCL1(var.2)_rc); m=3/16; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.536912; --gsrGCAGGTGchg---- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; positions_7nt_m3 versus MA1485.1_rc (FERD3L_rc); m=4/16; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.526903; --GTrACAGCTGkyrC--- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; positions_7nt_m3 versus MA0830.2_rc (TCF4_rc); m=5/16; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.523809; --ssggCAGGTGccg---- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0 0

MA0521.1_shift4 (Tcf12)
; positions_7nt_m3 versus MA0521.1 (Tcf12); m=6/16; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.502682; ----rRCAGCTGswg---- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0

MA0816.1_shift4 (Ascl2)
; positions_7nt_m3 versus MA0816.1 (Ascl2); m=7/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.494765; ----arCAGCTGyy----- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0

MA1100.2_shift4 (ASCL1)
; positions_7nt_m3 versus MA1100.2 (ASCL1); m=8/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.484129; ----rrCAGCTGcy----- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; positions_7nt_m3 versus MA1619.1 (Ptf1a(var.2)); m=9/16; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.482701; ---rmaCAGCTGtky---- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; positions_7nt_m3 versus MA0048.2_rc (NHLH1_rc); m=10/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.481851; ----mGCAGCTGCg----- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0 0

MA1641.1_shift3 (MYF5)
; positions_7nt_m3 versus MA1641.1 (MYF5); m=11/16; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.474223; ---gvaCAGCTGtbc---- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; positions_7nt_m3 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=12/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.465881; ----csCAGCTGsg----- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; positions_7nt_m3 versus MA1472.1 (BHLHA15(var.2)); m=13/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.441376; ----avCAGCTGyy----- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; positions_7nt_m3 versus MA1648.1_rc (TCF12(var.2)_rc); m=14/16; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.43128; ---srGCAGGTGss----- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; positions_7nt_m3 versus MA0522.3_rc (TCF3_rc); m=15/16; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.425328; ---ssGCAGGTGbs----- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; positions_7nt_m3 versus MA1467.1 (ATOH1(var.2)); m=16/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.400689; ----AACAGCTGTY----- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m24_shift0 ; 30 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m24_shift0 (dyads_m24dyads_m24)
; dyads_m24 (dyads_m24dyads_m24); m=0 (reference); ncol1=15; shift=0; ncol=19; swgCCAGCTGTCasc---- ; Alignment reference a 80 100 29 33 1 378 2 2 3 0 6 1 257 45 66 0 0 0 0 c 130 69 72 282 381 1 15 374 0 2 21 372 48 144 141 0 0 0 0 g 115 90 258 49 0 1 361 2 2 380 11 7 29 109 88 0 0 0 0 t 57 123 23 18 0 2 4 4 377 0 344 2 48 84 87 0 0 0 0

MA1485.1_shift0 (FERD3L)
; dyads_m24 versus MA1485.1 (FERD3L); m=1/29; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.725526; GyrmCAGCTGTyAC----- ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 0 0 0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 0 0 0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 0 0 0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0 0 0 0

MA0499.2_shift1 (MYOD1)
; dyads_m24 versus MA0499.2 (MYOD1); m=2/29; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.686678; -cwgCACCTGTymy----- ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0 0 0

MA0796.1_rc_shift1 (TGIF1_rc)
; dyads_m24 versus MA0796.1_rc (TGIF1_rc); m=3/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.679837; -TGACAGCTGTCA------ ; cor=; Ncor= a 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 0 0 0 c 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 0 0 0 g 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 0 0 0 t 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0 0 0 0

MA1571.1_shift1 (TGIF2LX)
; dyads_m24 versus MA1571.1 (TGIF2LX); m=4/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.676147; -TGACAgcTGTCA------ ; cor=; Ncor= a 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 0 0 0 0 c 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 0 0 0 0 g 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 0 0 0 0 t 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0 0 0 0 0

MA1109.1_rc_shift0 (NEUROD1_rc)
; dyads_m24 versus MA1109.1_rc (NEUROD1_rc); m=5/29; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.671448; syrCCATCTGtyc------ ; cor=; Ncor= a 525.0 451.0 580.0 168.0 31.0 2157.0 21.0 90.0 18.0 12.0 47.0 298.0 566.0 0 0 0 0 0 0 c 628.0 599.0 418.0 1962.0 2231.0 19.0 77.0 2152.0 16.0 13.0 494.0 906.0 726.0 0 0 0 0 0 0 g 591.0 540.0 911.0 93.0 7.0 51.0 150.0 24.0 7.0 2240.0 452.0 323.0 429.0 0 0 0 0 0 0 t 538.0 692.0 373.0 59.0 13.0 55.0 2034.0 16.0 2241.0 17.0 1289.0 755.0 561.0 0 0 0 0 0 0

MA0797.1_rc_shift1 (TGIF2_rc)
; dyads_m24 versus MA0797.1_rc (TGIF2_rc); m=6/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.670507; -TGACAsCTGTCA------ ; cor=; Ncor= a 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 0 0 0 c 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 0 0 0 g 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 0 0 0 t 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0 0 0 0

MA1572.1_shift1 (TGIF2LY)
; dyads_m24 versus MA1572.1 (TGIF2LY); m=7/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.668029; -TGACAgcTGTCA------ ; cor=; Ncor= a 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 0 0 0 c 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 0 0 0 g 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 0 0 0 t 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0 0 0 0

MA1641.1_rc_shift1 (MYF5_rc)
; dyads_m24 versus MA1641.1_rc (MYF5_rc); m=8/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.66609; -gvaCAGCTGtbc------ ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 0 0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 0 0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 0 0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0 0 0 0

MA1619.1_rc_shift1 (Ptf1a(var.2)_rc)
; dyads_m24 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=9/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.657597; -rmaCAGCTGtky------ ; cor=; Ncor= a 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 0 0 0 c 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 0 0 0 g 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 0 0 0 t 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0 0 0 0

MA0832.1_rc_shift0 (Tcf21_rc)
; dyads_m24 versus MA0832.1_rc (Tcf21_rc); m=10/29; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.654551; ryAACAGCTGTTry----- ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; dyads_m24 versus MA0521.1_rc (Tcf12_rc); m=11/29; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.644481; -cwsCAGCTGYy------- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0

MA0783.1_rc_shift1 (PKNOX2_rc)
; dyads_m24 versus MA0783.1_rc (PKNOX2_rc); m=12/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.638655; -TGACAsCTGTCA------ ; cor=; Ncor= a 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 0 0 0 c 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 0 0 0 g 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 0 0 0 t 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0 0 0 0

MA1123.2_shift0 (TWIST1)
; dyads_m24 versus MA1123.2 (TWIST1); m=13/29; ncol2=13; w=13; offset=0; strand=D; shift=0; score=0.636477; awwCCAGATGtbt------ ; cor=; Ncor= a 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 6823.0 0 0 0 0 0 0 c 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 6561.0 0 0 0 0 0 0 g 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 6213.0 0 0 0 0 0 0 t 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0 7736.0 0 0 0 0 0 0

MA0500.2_shift1 (MYOG)
; dyads_m24 versus MA0500.2 (MYOG); m=14/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.631548; -sarCAGCTGyts------ ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0

MA1642.1_rc_shift1 (NEUROG2(var.2)_rc)
; dyads_m24 versus MA1642.1_rc (NEUROG2(var.2)_rc); m=15/29; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.631168; -brCCATCTGtyyy----- ; cor=; Ncor= a 0 7184.0 9704.0 4904.0 484.0 32515.0 275.0 2806.0 159.0 237.0 1750.0 4721.0 8378.0 7535.0 0 0 0 0 0 c 0 8709.0 7581.0 24998.0 33422.0 323.0 418.0 30392.0 301.0 317.0 8039.0 11114.0 10123.0 10813.0 0 0 0 0 0 g 0 9034.0 10441.0 2966.0 205.0 904.0 952.0 793.0 211.0 33559.0 8154.0 6467.0 6843.0 7353.0 0 0 0 0 0 t 0 9464.0 6665.0 1523.0 280.0 649.0 32746.0 400.0 33720.0 278.0 16448.0 12089.0 9047.0 8690.0 0 0 0 0 0

MA0745.2_shift1 (SNAI2)
; dyads_m24 versus MA0745.2 (SNAI2); m=16/29; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.613651; -aygCACCTGTmry----- ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 0 0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 0 0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 0 0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0 0 0 0

MA1467.1_shift2 (ATOH1(var.2))
; dyads_m24 versus MA1467.1 (ATOH1(var.2)); m=17/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.57025; --AACAGCTGTY------- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0 0

MA1472.1_shift2 (BHLHA15(var.2))
; dyads_m24 versus MA1472.1 (BHLHA15(var.2)); m=18/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.558125; --avCAGCTGyy------- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0 0 0

MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; dyads_m24 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=19/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.554253; --csCAGCTGsg------- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0 0

MA1100.2_rc_shift2 (ASCL1_rc)
; dyads_m24 versus MA1100.2_rc (ASCL1_rc); m=20/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.53167; --rgCAGCTGyy------- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0 0

MA0816.1_shift2 (Ascl2)
; dyads_m24 versus MA0816.1 (Ascl2); m=21/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.503889; --arCAGCTGyy------- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0 0

MA0665.1_shift2 (MSC)
; dyads_m24 versus MA0665.1 (MSC); m=22/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.49105; --AACAGCTGTT------- ; cor=; Ncor= a 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 0 0 0 c 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 0 0 0 g 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 0 0 0 t 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0 0 0 0

MA0691.1_rc_shift2 (TFAP4_rc)
; dyads_m24 versus MA0691.1_rc (TFAP4_rc); m=23/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.490729; --AwCAGCTGwT------- ; cor=; Ncor= a 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 0 0 0 c 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 0 0 0 g 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 0 0 0 t 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0 0 0 0

MA0774.1_rc_shift6 (MEIS2_rc)
; dyads_m24 versus MA0774.1_rc (MEIS2_rc); m=24/29; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.481528; ------sCTGTCAa----- ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 0 0 0 0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 0 0 0 0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 0 0 0 0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0 0 0 0 0

MA0820.1_shift2 (FIGLA)
; dyads_m24 versus MA0820.1 (FIGLA); m=25/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.474207; --wmCACCTGkw------- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0 0 0

MA0667.1_shift2 (MYF6)
; dyads_m24 versus MA0667.1 (MYF6); m=26/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.47013; --AACArCTGTY------- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0 0 0 0

MA0775.1_rc_shift6 (MEIS3_rc)
; dyads_m24 versus MA0775.1_rc (MEIS3_rc); m=27/29; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.463063; ------scTGTCAw----- ; cor=; Ncor= a 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 0 0 0 0 c 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 0 0 0 0 g 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 0 0 0 0 t 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0 0 0 0 0

MA0782.2_rc_shift4 (PKNOX1_rc)
; dyads_m24 versus MA0782.2_rc (PKNOX1_rc); m=28/29; ncol2=15; w=11; offset=4; strand=R; shift=4; score=0.426034; ----yagCTGTCAcTCAwa ; cor=; Ncor= a 0 0 0 0 9877.0 12900.0 6042.0 5092.0 2629.0 886.0 720.0 691.0 36918.0 7333.0 1196.0 1043.0 29794.0 10355.0 11050.0 c 0 0 0 0 10296.0 9060.0 9128.0 27367.0 2408.0 580.0 2459.0 37713.0 1027.0 26182.0 1330.0 36106.0 3322.0 9535.0 9599.0 g 0 0 0 0 9268.0 9386.0 16341.0 4759.0 944.0 37846.0 410.0 1004.0 878.0 4123.0 678.0 1160.0 1625.0 9828.0 9503.0 t 0 0 0 0 10522.0 8617.0 8452.0 2745.0 33982.0 651.0 36374.0 555.0 1140.0 2325.0 36759.0 1654.0 5222.0 10245.0 9811.0

MA0498.2_rc_shift7 (MEIS1_rc)
; dyads_m24 versus MA0498.2_rc (MEIS1_rc); m=29/29; ncol2=7; w=7; offset=7; strand=R; shift=7; score=0.424134; -------cTGTCAw----- ; cor=; Ncor= a 0 0 0 0 0 0 0 15106.0 3861.0 1155.0 0.0 0.0 77159.0 24921.0 0 0 0 0 0 c 0 0 0 0 0 0 0 29965.0 9263.0 0.0 672.0 77159.0 3174.0 9714.0 0 0 0 0 0 g 0 0 0 0 0 0 0 14864.0 0.0 77159.0 2903.0 1249.0 5575.0 18797.0 0 0 0 0 0 t 0 0 0 0 0 0 0 17224.0 77159.0 0.0 77159.0 0.0 8690.0 23727.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m7_shift0 ; 17 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m7_shift0 (local_words_8nt_m7local_words_8nt_m7)
; local_words_8nt_m7 (local_words_8nt_m7local_words_8nt_m7); m=0 (reference); ncol1=18; shift=0; ncol=18; srGCAGCAGCTGCTGCys ; Alignment reference a 45 79 26 10 237 10 1 268 0 0 14 0 5 22 10 21 57 49 c 120 63 27 238 17 6 284 3 5 281 1 1 265 10 28 212 87 72 g 72 87 212 28 10 265 1 1 281 5 3 284 6 17 238 27 63 120 t 49 57 21 10 22 5 0 14 0 0 268 1 10 237 10 26 79 45

MA1529.1_shift0 (NHLH2)
; local_words_8nt_m7 versus MA1529.1 (NHLH2); m=1/16; ncol2=18; w=18; offset=0; strand=D; shift=0; score=0.724844; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_8nt_m7 versus MA1485.1_rc (FERD3L_rc); m=2/16; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.579937; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; local_words_8nt_m7 versus MA0500.2_rc (MYOG_rc); m=3/16; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.570907; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; local_words_8nt_m7 versus MA0832.1_rc (Tcf21_rc); m=4/16; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.55872; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_8nt_m7 versus MA0816.1_rc (Ascl2_rc); m=5/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.526827; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; local_words_8nt_m7 versus MA1631.1_rc (ASCL1(var.2)_rc); m=6/16; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.516725; --gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_8nt_m7 versus MA0521.1_rc (Tcf12_rc); m=7/16; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.504266; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_8nt_m7 versus MA0048.2_rc (NHLH1_rc); m=8/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.494325; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; local_words_8nt_m7 versus MA1100.2_rc (ASCL1_rc); m=9/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.490379; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_8nt_m7 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=10/16; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.475231; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; local_words_8nt_m7 versus MA1641.1_rc (MYF5_rc); m=11/16; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.469477; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; local_words_8nt_m7 versus MA1635.1 (BHLHE22(var.2)); m=12/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.467954; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; local_words_8nt_m7 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=13/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.461473; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; local_words_8nt_m7 versus MA0691.1_rc (TFAP4_rc); m=14/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.442791; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA0665.1_shift4 (MSC)
; local_words_8nt_m7 versus MA0665.1 (MSC); m=15/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.426452; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; local_words_8nt_m7 versus MA1467.1 (ATOH1(var.2)); m=16/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.41671; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m8_shift0 ; 22 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m8_shift0 (positions_7nt_m8positions_7nt_m8)
; positions_7nt_m8 (positions_7nt_m8positions_7nt_m8); m=0 (reference); ncol1=16; shift=0; ncol=18; ssgcaGCAGCTGCyss-- ; Alignment reference a 258 302 302 119 828 36 3 1293 3 5 7 3 13 250 251 203 0 0 c 455 393 293 792 114 14 1325 12 7 1315 15 0 1257 370 347 506 0 0 g 344 424 549 291 169 1278 5 7 1320 12 16 1327 19 238 530 356 0 0 t 276 214 189 131 222 5 0 21 3 1 1295 3 44 475 205 268 0 0

MA1529.1_shift0 (NHLH2)
; positions_7nt_m8 versus MA1529.1 (NHLH2); m=1/21; ncol2=18; w=16; offset=0; strand=D; shift=0; score=0.723589; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_7nt_m8 versus MA0500.2_rc (MYOG_rc); m=2/21; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.694632; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; positions_7nt_m8 versus MA1631.1 (ASCL1(var.2)); m=3/21; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.651784; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0830.2_shift3 (TCF4)
; positions_7nt_m8 versus MA0830.2 (TCF4); m=4/21; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.638589; ---cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA1485.1_shift2 (FERD3L)
; positions_7nt_m8 versus MA1485.1 (FERD3L); m=5/21; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.614618; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0521.1_shift4 (Tcf12)
; positions_7nt_m8 versus MA0521.1 (Tcf12); m=6/21; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.598597; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA0816.1_shift4 (Ascl2)
; positions_7nt_m8 versus MA0816.1 (Ascl2); m=7/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.592344; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; positions_7nt_m8 versus MA1619.1 (Ptf1a(var.2)); m=8/21; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.590932; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; positions_7nt_m8 versus MA0048.2_rc (NHLH1_rc); m=9/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.583828; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1100.2_shift4 (ASCL1)
; positions_7nt_m8 versus MA1100.2 (ASCL1); m=10/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.583333; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; positions_7nt_m8 versus MA1641.1_rc (MYF5_rc); m=11/21; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.581352; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA0499.2_shift3 (MYOD1)
; positions_7nt_m8 versus MA0499.2 (MYOD1); m=12/21; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.576489; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; positions_7nt_m8 versus MA1635.1 (BHLHE22(var.2)); m=13/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.56084; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; positions_7nt_m8 versus MA1472.1 (BHLHA15(var.2)); m=14/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.530402; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; positions_7nt_m8 versus MA1648.1_rc (TCF12(var.2)_rc); m=15/21; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.519434; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; positions_7nt_m8 versus MA0522.3_rc (TCF3_rc); m=16/21; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.513096; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; positions_7nt_m8 versus MA1467.1 (ATOH1(var.2)); m=17/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.483899; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; positions_7nt_m8 versus MA0691.1 (TFAP4); m=18/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.476555; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; positions_7nt_m8 versus MA0665.1_rc (MSC_rc); m=19/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.456032; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA1558.1_shift4 (SNAI1)
; positions_7nt_m8 versus MA1558.1 (SNAI1); m=20/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.450515; ----drCAGGTGyr---- ; cor=; Ncor= a 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 0 c 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 0 g 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 0 t 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0 0

MA1559.1_shift4 (SNAI3)
; positions_7nt_m8 versus MA1559.1 (SNAI3); m=21/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.440799; ----arCAGGTGya---- ; cor=; Ncor= a 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m40_shift6 ; 15 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m40_shift6 (dyads_m40dyads_m40)
; dyads_m40 (dyads_m40dyads_m40); m=0 (reference); ncol1=10; shift=6; ncol=16; ------ysCCCACAsm ; Alignment reference a 0 0 0 0 0 0 167 202 0 0 0 903 0 903 126 248 c 0 0 0 0 0 0 287 231 903 903 903 0 903 0 260 310 g 0 0 0 0 0 0 189 283 0 0 0 0 0 0 398 187 t 0 0 0 0 0 0 260 187 0 0 0 0 0 0 119 158

MA0767.1_rc_shift6 (GCM2_rc)
; dyads_m40 versus MA0767.1_rc (GCM2_rc); m=1/14; ncol2=10; w=10; offset=0; strand=R; shift=6; score=0.723551; ------yrCCCGCATv ; cor=; Ncor= a 0 0 0 0 0 0 240.0 1320.0 0.0 13.0 66.0 127.0 0.0 1320.0 45.0 427.0 c 0 0 0 0 0 0 341.0 91.0 1320.0 1320.0 1320.0 138.0 1320.0 24.0 299.0 375.0 g 0 0 0 0 0 0 140.0 533.0 0.0 0.0 1.0 1320.0 32.0 41.0 77.0 340.0 t 0 0 0 0 0 0 599.0 92.0 1.0 0.0 51.0 84.0 263.0 23.0 1320.0 179.0

MA0002.2_rc_shift6 (RUNX1_rc)
; dyads_m40 versus MA0002.2_rc (RUNX1_rc); m=2/14; ncol2=11; w=10; offset=0; strand=R; shift=6; score=0.714003; ------waaCCACAra ; cor=; Ncor= a 0 0 0 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 c 0 0 0 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 g 0 0 0 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 t 0 0 0 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0

MA1601.1_rc_shift5 (ZNF75D_rc)
; dyads_m40 versus MA1601.1_rc (ZNF75D_rc); m=3/14; ncol2=10; w=9; offset=-1; strand=R; shift=5; score=0.698332; -----TyTCCCACay- ; cor=; Ncor= a 0 0 0 0 0 512.0 396.0 18.0 28.0 124.0 5.0 6686.0 0.0 3519.0 1225.0 0 c 0 0 0 0 0 746.0 1693.0 15.0 6678.0 6545.0 6710.0 4.0 6757.0 1468.0 1850.0 0 g 0 0 0 0 0 256.0 576.0 20.0 29.0 44.0 18.0 59.0 0.0 715.0 1573.0 0 t 0 0 0 0 0 5245.0 4094.0 6706.0 24.0 46.0 26.0 10.0 2.0 1057.0 2111.0 0

MA0597.1_shift5 (THAP1)
; dyads_m40 versus MA0597.1 (THAP1); m=4/14; ncol2=9; w=8; offset=-1; strand=D; shift=5; score=0.521201; -----ytGCCMkya-- ; cor=; Ncor= a 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 0 0 c 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 0 0 g 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 0 0 t 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0 0 0

MA0162.4_shift3 (EGR1)
; dyads_m40 versus MA0162.4 (EGR1); m=5/14; ncol2=14; w=10; offset=-3; strand=D; shift=3; score=0.517909; ---ccmCGCCCACgCm ; cor=; Ncor= a 0 0 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 c 0 0 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 g 0 0 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 t 0 0 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0

MA0130.1_shift7 (ZNF354C)
; dyads_m40 versus MA0130.1 (ZNF354C); m=6/14; ncol2=6; w=6; offset=1; strand=D; shift=7; score=0.48166; -------mTCCAC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 c 0 0 0 0 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 g 0 0 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 t 0 0 0 0 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0

MA1107.2_shift0 (KLF9)
; dyads_m40 versus MA1107.2 (KLF9); m=7/14; ncol2=16; w=10; offset=-6; strand=D; shift=0; score=0.479376; crgCCACACCCAChyc ; cor=; Ncor= a 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 5875.0 c 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 9519.0 g 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 5681.0 t 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0 4504.0

MA1491.1_shift2 (GLI3)
; dyads_m40 versus MA1491.1 (GLI3); m=8/14; ncol2=15; w=10; offset=-4; strand=D; shift=2; score=0.478002; --vGACCACCCACgwc ; cor=; Ncor= a 0 0 9265.0 177.0 17348.0 68.0 7.0 18184.0 3.0 4984.0 528.0 18709.0 2186.0 4643.0 8397.0 6506.0 c 0 0 7913.0 232.0 3972.0 19263.0 19329.0 2211.0 19326.0 18084.0 18879.0 0.0 17927.0 5419.0 3326.0 11363.0 g 0 0 7702.0 18754.0 2832.0 7.0 1.0 194.0 4.0 1.0 15.0 1486.0 1360.0 12721.0 5324.0 2363.0 t 0 0 2622.0 1323.0 3.0 0.0 0.0 699.0 1.0 2.0 323.0 0.0 1506.0 1615.0 9056.0 6602.0

MA0734.2_shift2 (GLI2)
; dyads_m40 versus MA0734.2 (GLI2); m=9/14; ncol2=15; w=10; offset=-4; strand=D; shift=2; score=0.466961; --vGACCACCCACgwy ; cor=; Ncor= a 0 0 5234.0 88.0 14096.0 0.0 0.0 15762.0 0.0 3319.0 167.0 16175.0 1207.0 3354.0 7613.0 4438.0 c 0 0 4901.0 215.0 2886.0 16427.0 16442.0 675.0 16444.0 15079.0 16216.0 7.0 15453.0 4113.0 1810.0 9203.0 g 0 0 4702.0 15957.0 1758.0 0.0 0.0 97.0 0.0 0.0 13.0 539.0 694.0 13225.0 3253.0 1368.0 t 0 0 1607.0 728.0 0.0 8.0 1.0 302.0 0.0 0.0 152.0 24.0 841.0 1146.0 7647.0 5871.0

MA0088.2_shift6 (ZNF143)
; dyads_m40 versus MA0088.2 (ZNF143); m=10/14; ncol2=16; w=10; offset=0; strand=D; shift=6; score=0.451211; ------ywCCCAyAAT ; cor=; Ncor= a 0 0 0 0 0 0 87.0 949.0 21.0 2.0 0.0 1609.0 0.0 1295.0 1572.0 6.0 c 0 0 0 0 0 0 509.0 0.0 1590.0 1609.0 1609.0 0.0 917.0 143.0 0.0 0.0 g 0 0 0 0 0 0 153.0 13.0 1.0 0.0 0.0 4.0 61.0 310.0 67.0 1.0 t 0 0 0 0 0 0 1285.0 652.0 1.0 0.0 0.0 3.0 686.0 0.0 1.0 1609.0

MA1627.1_shift1 (Wt1)
; dyads_m40 versus MA1627.1 (Wt1); m=11/14; ncol2=14; w=9; offset=-5; strand=D; shift=1; score=0.448446; -cycCTCCCCCACmc- ; cor=; Ncor= a 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 1675.0 520.0 0 c 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 1350.0 2023.0 0 g 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 928.0 1038.0 0 t 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0 738.0 1110.0 0

MA1630.1_rc_shift3 (Znf281_rc)
; dyads_m40 versus MA1630.1_rc (Znf281_rc); m=12/14; ncol2=11; w=8; offset=-3; strand=R; shift=3; score=0.435612; ---CcTCCCCCAcc-- ; cor=; Ncor= a 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 0 0 c 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 0 0 g 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 0 0 t 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0 0 0

MA0747.1_shift2 (SP8)
; dyads_m40 versus MA0747.1 (SP8); m=13/14; ncol2=12; w=8; offset=-4; strand=D; shift=2; score=0.413646; --rmCACgCCCmCy-- ; cor=; Ncor= a 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 0 c 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 0 g 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 0 t 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0 0

MA1512.1_shift2 (KLF11)
; dyads_m40 versus MA1512.1 (KLF11); m=14/14; ncol2=11; w=7; offset=-4; strand=D; shift=2; score=0.403963; --gcCACGCCCmC--- ; cor=; Ncor= a 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 c 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 g 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 t 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m35_shift1 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m35_shift1 (dyads_m35dyads_m35)
; dyads_m35 (dyads_m35dyads_m35); m=0 (reference); ncol1=10; shift=1; ncol=14; -ssCCGCGCss--- ; Alignment reference a 0 42 37 3 0 0 0 0 1 53 34 0 0 0 c 0 192 139 317 374 0 390 0 380 147 159 0 0 0 g 0 118 170 68 16 390 0 390 4 146 153 0 0 0 t 0 38 44 2 0 0 0 0 5 44 44 0 0 0

MA0632.2_shift1 (TCFL5)
; dyads_m35 versus MA0632.2 (TCFL5); m=1/5; ncol2=10; w=10; offset=0; strand=D; shift=1; score=0.722465; -kCrCGCGCmc--- ; cor=; Ncor= a 0 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 72543.0 10588.0 0 0 0 c 0 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 44394.0 47538.0 0 0 0 g 0 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 19096.0 5747.0 0 0 0 t 0 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 25921.0 8670.0 0 0 0

MA1650.1_shift1 (ZBTB14)
; dyads_m35 versus MA1650.1 (ZBTB14); m=2/5; ncol2=12; w=10; offset=0; strand=D; shift=1; score=0.709204; -ssCCGCGCACss- ; cor=; Ncor= a 0 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 0 c 0 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 0 g 0 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 0 t 0 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0 0

MA1516.1_shift1 (KLF3)
; dyads_m35 versus MA1516.1 (KLF3); m=3/5; ncol2=11; w=10; offset=0; strand=D; shift=1; score=0.67781; -grCCrCGCCCw-- ; cor=; Ncor= a 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 c 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 g 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 t 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0

MA1513.1_shift0 (KLF15)
; dyads_m35 versus MA1513.1 (KLF15); m=4/5; ncol2=11; w=10; offset=-1; strand=D; shift=0; score=0.66797; scCCCGCCCcs--- ; cor=; Ncor= a 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 c 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 g 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 t 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0

MA0506.1_rc_shift4 (NRF1_rc)
; dyads_m35 versus MA0506.1_rc (NRF1_rc); m=5/5; ncol2=11; w=7; offset=3; strand=R; shift=4; score=0.405784; ----yGCGCAkGCG ; cor=; Ncor= a 0 0 0 0 0.0 0.0 0.0 286.0 0.0 3693.0 313.0 140.0 0.0 0.0 c 0 0 0 0 1575.0 0.0 4275.0 0.0 4624.0 528.0 935.0 468.0 4239.0 0.0 g 0 0 0 0 804.0 4550.0 349.0 4338.0 0.0 403.0 1862.0 4016.0 189.0 4001.0 t 0 0 0 0 2245.0 74.0 0.0 0.0 0.0 0.0 1514.0 0.0 196.0 623.0

One-to-n matrix alignment; reference matrix: dyads_m41_shift1 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m41_shift1 (dyads_m41dyads_m41)
; dyads_m41 (dyads_m41dyads_m41); m=0 (reference); ncol1=11; shift=1; ncol=12; -ssCGCsCGCss ; Alignment reference a 0 40 37 1 3 4 57 5 1 2 71 43 c 0 253 147 444 6 430 140 458 5 441 162 178 g 0 128 243 24 461 20 217 6 461 22 164 180 t 0 49 43 1 0 16 56 1 3 5 73 69

MA0506.1_rc_shift1 (NRF1_rc)
; dyads_m41 versus MA0506.1_rc (NRF1_rc); m=1/4; ncol2=11; w=11; offset=0; strand=R; shift=1; score=0.721947; -yGCGCAkGCGC ; cor=; Ncor= a 0 0.0 0.0 0.0 286.0 0.0 3693.0 313.0 140.0 0.0 0.0 0.0 c 0 1575.0 0.0 4275.0 0.0 4624.0 528.0 935.0 468.0 4239.0 0.0 3647.0 g 0 804.0 4550.0 349.0 4338.0 0.0 403.0 1862.0 4016.0 189.0 4001.0 375.0 t 0 2245.0 74.0 0.0 0.0 0.0 0.0 1514.0 0.0 196.0 623.0 602.0

MA0632.2_shift2 (TCFL5)
; dyads_m41 versus MA0632.2 (TCFL5); m=2/4; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.703694; --kCrCGCGCmc ; cor=; Ncor= a 0 0 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 72543.0 10588.0 c 0 0 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 44394.0 47538.0 g 0 0 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 19096.0 5747.0 t 0 0 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 25921.0 8670.0

MA1650.1_shift0 (ZBTB14)
; dyads_m41 versus MA1650.1 (ZBTB14); m=3/4; ncol2=12; w=11; offset=-1; strand=D; shift=0; score=0.650207; ssCCGCGCACss ; cor=; Ncor= a 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 c 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 g 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 t 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0

MA0006.1_rc_shift5 (Ahr::Arnt_rc)
; dyads_m41 versus MA0006.1_rc (Ahr::Arnt_rc); m=4/4; ncol2=6; w=6; offset=4; strand=R; shift=5; score=0.440442; -----CACGCr- ; cor=; Ncor= a 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 11.0 0 c 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 2.0 0 g 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 8.0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 3.0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m30_shift0 ; 13 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m30_shift0 (oligos_8nt_mkv5_m30oligos_8nt_mkv5_m30)
; oligos_8nt_mkv5_m30 (oligos_8nt_mkv5_m30oligos_8nt_mkv5_m30); m=0 (reference); ncol1=12; shift=0; ncol=13; gsAGCAGTTGby- ; Alignment reference a 30 28 139 10 3 135 2 2 1 3 13 15 0 c 31 46 2 3 136 3 0 0 4 1 43 54 0 g 55 36 0 123 0 2 132 2 1 136 41 28 0 t 25 31 0 5 2 1 7 137 135 1 44 44 0

MA0100.3_rc_shift2 (MYB_rc)
; oligos_8nt_mkv5_m30 versus MA0100.3_rc (MYB_rc); m=1/12; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.721753; --kdCAGTTGvk- ; cor=; Ncor= a 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 c 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 g 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 t 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0

MA1631.1_rc_shift0 (ASCL1(var.2)_rc)
; oligos_8nt_mkv5_m30 versus MA1631.1_rc (ASCL1(var.2)_rc); m=2/12; ncol2=13; w=12; offset=0; strand=R; shift=0; score=0.680126; gsrGCAGGTGchg ; cor=; Ncor= a 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 c 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 g 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 t 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0

MA1648.1_rc_shift1 (TCF12(var.2)_rc)
; oligos_8nt_mkv5_m30 versus MA1648.1_rc (TCF12(var.2)_rc); m=3/12; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.676203; -srGCAGGTGss- ; cor=; Ncor= a 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 c 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 g 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 t 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0

MA0522.3_rc_shift1 (TCF3_rc)
; oligos_8nt_mkv5_m30 versus MA0522.3_rc (TCF3_rc); m=4/12; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.671045; -ssGCAGGTGbs- ; cor=; Ncor= a 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 c 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 g 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 t 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0

MA0830.2_rc_shift0 (TCF4_rc)
; oligos_8nt_mkv5_m30 versus MA0830.2_rc (TCF4_rc); m=5/12; ncol2=13; w=12; offset=0; strand=R; shift=0; score=0.653291; ssggCAGGTGccg ; cor=; Ncor= a 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 c 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 g 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 t 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0

MA0816.1_rc_shift2 (Ascl2_rc)
; oligos_8nt_mkv5_m30 versus MA0816.1_rc (Ascl2_rc); m=6/12; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.644977; --rrCAGCTGyt- ; cor=; Ncor= a 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 c 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 g 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 t 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0

MA1100.2_shift2 (ASCL1)
; oligos_8nt_mkv5_m30 versus MA1100.2 (ASCL1); m=7/12; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.615672; --rrCAGCTGcy- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0

MA0500.2_rc_shift1 (MYOG_rc)
; oligos_8nt_mkv5_m30 versus MA0500.2_rc (MYOG_rc); m=8/12; ncol2=12; w=11; offset=1; strand=R; shift=1; score= 0.6146; -sarCAGCTGyts ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0

MA1472.1_shift2 (BHLHA15(var.2))
; oligos_8nt_mkv5_m30 versus MA1472.1 (BHLHA15(var.2)); m=9/12; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.604663; --avCAGCTGyy- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0

MA0048.2_rc_shift2 (NHLH1_rc)
; oligos_8nt_mkv5_m30 versus MA0048.2_rc (NHLH1_rc); m=10/12; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.594699; --mGCAGCTGCg- ; cor=; Ncor= a 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 c 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 g 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 t 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0

MA0667.1_rc_shift2 (MYF6_rc)
; oligos_8nt_mkv5_m30 versus MA0667.1_rc (MYF6_rc); m=11/12; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.586405; --RACAGyTGTT- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 c 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 g 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 t 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0

MA0521.1_shift2 (Tcf12)
; oligos_8nt_mkv5_m30 versus MA0521.1 (Tcf12); m=12/12; ncol2=11; w=10; offset=2; strand=D; shift=2; score=0.546412; --rRCAGCTGswg ; cor=; Ncor= a 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0

One-to-n matrix alignment; reference matrix: local_words_7nt_m11_shift1 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m11_shift1 (local_words_7nt_m11local_words_7nt_m11)
; local_words_7nt_m11 (local_words_7nt_m11local_words_7nt_m11); m=0 (reference); ncol1=17; shift=1; ncol=18; -sgsAGCAGCTGCTGcyg ; Alignment reference a 0 106 111 40 360 25 2 447 2 0 17 1 8 37 24 34 81 96 c 0 127 87 119 29 11 454 2 5 441 3 1 430 22 55 302 147 102 g 0 151 183 259 41 416 0 2 450 11 3 454 5 29 353 63 102 164 t 0 73 76 39 27 5 1 6 0 5 434 1 14 369 25 58 127 95

MA1529.1_rc_shift0 (NHLH2_rc)
; local_words_7nt_m11 versus MA1529.1_rc (NHLH2_rc); m=1/20; ncol2=18; w=17; offset=-1; strand=R; shift=0; score=0.721303; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA0500.2_rc_shift3 (MYOG_rc)
; local_words_7nt_m11 versus MA0500.2_rc (MYOG_rc); m=2/20; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.623765; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; local_words_7nt_m11 versus MA0832.1_rc (Tcf21_rc); m=3/20; ncol2=14; w=14; offset=1; strand=R; shift=2; score=0.598486; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_7nt_m11 versus MA1485.1_rc (FERD3L_rc); m=4/20; ncol2=14; w=14; offset=1; strand=R; shift=2; score=0.588381; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; local_words_7nt_m11 versus MA1631.1_rc (ASCL1(var.2)_rc); m=5/20; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.578967; --gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; local_words_7nt_m11 versus MA0830.2_rc (TCF4_rc); m=6/20; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.562933; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_7nt_m11 versus MA0816.1_rc (Ascl2_rc); m=7/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.561028; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA0521.1_shift4 (Tcf12)
; local_words_7nt_m11 versus MA0521.1 (Tcf12); m=8/20; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.543663; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_7nt_m11 versus MA0048.2_rc (NHLH1_rc); m=9/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.528175; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; local_words_7nt_m11 versus MA1100.2_rc (ASCL1_rc); m=10/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.52596; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_7nt_m11 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=11/20; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.525474; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1641.1_shift3 (MYF5)
; local_words_7nt_m11 versus MA1641.1 (MYF5); m=12/20; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.520882; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; local_words_7nt_m11 versus MA1635.1 (BHLHE22(var.2)); m=13/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.501065; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; local_words_7nt_m11 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=14/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.493851; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; local_words_7nt_m11 versus MA0691.1 (TFAP4); m=15/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.470345; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; local_words_7nt_m11 versus MA1648.1_rc (TCF12(var.2)_rc); m=16/20; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.463011; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; local_words_7nt_m11 versus MA0522.3_rc (TCF3_rc); m=17/20; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.458226; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA0665.1_shift4 (MSC)
; local_words_7nt_m11 versus MA0665.1 (MSC); m=18/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.453949; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; local_words_7nt_m11 versus MA1467.1_rc (ATOH1(var.2)_rc); m=19/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.448367; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; local_words_7nt_m11 versus MA0667.1_rc (MYF6_rc); m=20/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.413263; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_8nt_m4_shift2 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_8nt_m4_shift2 (positions_8nt_m4positions_8nt_m4)
; positions_8nt_m4 (positions_8nt_m4positions_8nt_m4); m=0 (reference); ncol1=15; shift=2; ncol=18; --ssCACAGCTGCTGyb- ; Alignment reference a 0 0 138 123 55 541 2 644 4 3 72 3 4 47 21 85 107 0 c 0 0 172 209 500 46 646 1 15 636 0 2 601 12 45 255 190 0 g 0 0 225 197 77 31 2 3 629 5 1 646 14 9 567 147 192 0 t 0 0 117 123 20 34 2 4 4 8 579 1 33 584 19 165 163 0

MA0832.1_shift2 (Tcf21)
; positions_8nt_m4 versus MA0832.1 (Tcf21); m=1/20; ncol2=14; w=14; offset=0; strand=D; shift=2; score=0.719682; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; positions_8nt_m4 versus MA1485.1_rc (FERD3L_rc); m=2/20; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.693322; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0500.2_shift3 (MYOG)
; positions_8nt_m4 versus MA0500.2 (MYOG); m=3/20; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.663279; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; positions_8nt_m4 versus MA0499.2_rc (MYOD1_rc); m=4/20; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.660827; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; positions_8nt_m4 versus MA1619.1 (Ptf1a(var.2)); m=5/20; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.646548; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1641.1_shift3 (MYF5)
; positions_8nt_m4 versus MA1641.1 (MYF5); m=6/20; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.639893; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA0521.1_shift4 (Tcf12)
; positions_8nt_m4 versus MA0521.1 (Tcf12); m=7/20; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.613504; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1529.1_rc_shift0 (NHLH2_rc)
; positions_8nt_m4 versus MA1529.1_rc (NHLH2_rc); m=8/20; ncol2=18; w=15; offset=-2; strand=R; shift=0; score=0.613006; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA0816.1_shift4 (Ascl2)
; positions_8nt_m4 versus MA0816.1 (Ascl2); m=9/20; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.574157; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; positions_8nt_m4 versus MA0048.2 (NHLH1); m=10/20; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.57199; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; positions_8nt_m4 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/20; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.566246; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; positions_8nt_m4 versus MA1635.1 (BHLHE22(var.2)); m=12/20; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.557282; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; positions_8nt_m4 versus MA1100.2_rc (ASCL1_rc); m=13/20; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.548353; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA0665.1_shift4 (MSC)
; positions_8nt_m4 versus MA0665.1 (MSC); m=14/20; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.534913; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; positions_8nt_m4 versus MA0691.1 (TFAP4); m=15/20; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.534785; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; positions_8nt_m4 versus MA1467.1_rc (ATOH1(var.2)_rc); m=16/20; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.533743; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; positions_8nt_m4 versus MA1648.1 (TCF12(var.2)); m=17/20; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.517482; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; positions_8nt_m4 versus MA0667.1_rc (MYF6_rc); m=18/20; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.499837; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA1646.1_rc_shift6 (OSR2_rc)
; positions_8nt_m4 versus MA1646.1_rc (OSR2_rc); m=19/20; ncol2=12; w=11; offset=4; strand=R; shift=6; score=0.482293; ------ydGCTTCTGtkt ; cor=; Ncor= a 0 0 0 0 0 0 2730.0 3882.0 1192.0 240.0 279.0 1526.0 157.0 275.0 211.0 1950.0 3352.0 3484.0 c 0 0 0 0 0 0 4726.0 2266.0 841.0 13982.0 516.0 901.0 14206.0 737.0 406.0 2117.0 3006.0 3246.0 g 0 0 0 0 0 0 3304.0 4274.0 12109.0 170.0 288.0 703.0 229.0 197.0 13937.0 2221.0 4206.0 3641.0 t 0 0 0 0 0 0 4048.0 4386.0 666.0 416.0 13725.0 11678.0 216.0 13599.0 254.0 8520.0 4244.0 4437.0

MA0820.1_rc_shift4 (FIGLA_rc)
; positions_8nt_m4 versus MA0820.1_rc (FIGLA_rc); m=20/20; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.471166; ----wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m17_shift1 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m17_shift1 (dyads_m17dyads_m17)
; dyads_m17 (dyads_m17dyads_m17); m=0 (reference); ncol1=14; shift=1; ncol=15; -csCCGCssCCGCss ; Alignment reference a 0 69 67 9 13 18 7 47 63 11 12 19 13 74 66 c 0 337 196 585 599 37 597 337 214 597 581 31 598 318 216 g 0 159 321 44 29 587 37 205 303 33 46 582 34 195 292 t 0 92 73 19 16 15 16 68 77 16 18 25 12 70 83

MA0162.4_shift1 (EGR1)
; dyads_m17 versus MA0162.4 (EGR1); m=1/2; ncol2=14; w=14; offset=0; strand=D; shift=1; score=0.719224; -ccmCGCCCACgCms ; cor=; Ncor= a 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 3809.0 c 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 13686.0 g 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 7852.0 t 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0 5251.0

MA1513.1_shift0 (KLF15)
; dyads_m17 versus MA1513.1 (KLF15); m=2/2; ncol2=11; w=10; offset=-1; strand=D; shift=0; score=0.515665; scCCCGCCCcs---- ; cor=; Ncor= a 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 0 c 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 0 g 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 0 t 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m5_shift0 ; 14 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m5_shift0 (oligos_7nt_mkv4_m5oligos_7nt_mkv4_m5)
; oligos_7nt_mkv4_m5 (oligos_7nt_mkv4_m5oligos_7nt_mkv4_m5); m=0 (reference); ncol1=15; shift=0; ncol=17; CcCCCCCyCCCCCcc-- ; Alignment reference a 35 48 18 2 1 1 4 41 1 1 3 3 12 60 38 0 0 c 384 347 453 508 505 515 512 289 515 513 508 510 486 336 344 0 0 g 52 70 33 6 5 2 2 22 2 3 6 5 22 66 93 0 0 t 51 57 18 6 11 4 4 170 4 5 5 4 2 60 47 0 0

MA1653.1_shift1 (ZNF148)
; oligos_7nt_mkv4_m5 versus MA1653.1 (ZNF148); m=1/13; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.718052; -ysCCCCTCCCcc---- ; cor=; Ncor= a 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 0 0 c 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 0 0 g 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 0 0 t 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0 0 0

MA0753.2_shift2 (ZNF740)
; oligos_7nt_mkv4_m5 versus MA0753.2 (ZNF740); m=2/13; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.71514; --cyrCCCCCCCCAc-- ; cor=; Ncor= a 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 0 c 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 0 g 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 0 t 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0 0

MA0039.4_shift1 (KLF4)
; oligos_7nt_mkv4_m5 versus MA0039.4 (KLF4); m=3/13; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.629602; -ssCCCCACCChs---- ; cor=; Ncor= a 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 0 0 c 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 0 0 g 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 0 0 t 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0 0 0

MA1522.1_shift1 (MAZ)
; oligos_7nt_mkv4_m5 versus MA1522.1 (MAZ); m=4/13; ncol2=11; w=11; offset=1; strand=D; shift=1; score=0.623328; -ssCCCCTCCcc----- ; cor=; Ncor= a 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 0 0 c 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 0 0 g 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 0 0 t 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0 0 0

MA1564.1_shift2 (SP9)
; oligos_7nt_mkv4_m5 versus MA1564.1 (SP9); m=5/13; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.584847; --rcCmCGCCCmcy--- ; cor=; Ncor= a 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 0 0 c 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 0 0 g 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 0 0 t 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0 0 0

MA1513.1_shift2 (KLF15)
; oligos_7nt_mkv4_m5 versus MA1513.1 (KLF15); m=6/13; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.577654; --scCCCGCCCcs---- ; cor=; Ncor= a 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 0 c 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 0 g 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 0 t 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0 0

MA0741.1_shift2 (KLF16)
; oligos_7nt_mkv4_m5 versus MA0741.1 (KLF16); m=7/13; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.571111; --gmCMCgCCCMC---- ; cor=; Ncor= a 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 0 c 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 0 g 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 0 t 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0 0

MA0747.1_shift2 (SP8)
; oligos_7nt_mkv4_m5 versus MA0747.1 (SP8); m=8/13; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.562273; --rmCACgCCCmCy--- ; cor=; Ncor= a 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 0 0 c 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 0 0 g 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 0 0 t 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0 0 0

MA1627.1_shift3 (Wt1)
; oligos_7nt_mkv4_m5 versus MA1627.1 (Wt1); m=9/13; ncol2=14; w=12; offset=3; strand=D; shift=3; score=0.558313; ---cycCTCCCCCACmc ; cor=; Ncor= a 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 1675.0 520.0 c 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 1350.0 2023.0 g 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 928.0 1038.0 t 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0 738.0 1110.0

MA0599.1_shift2 (KLF5)
; oligos_7nt_mkv4_m5 versus MA0599.1 (KLF5); m=10/13; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.553368; --gCCMCrCCCh----- ; cor=; Ncor= a 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 0 c 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 0 g 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0 0

MA1578.1_shift5 (VEZF1)
; oligos_7nt_mkv4_m5 versus MA1578.1 (VEZF1); m=11/13; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.543593; -----CCCCCCmytw-- ; cor=; Ncor= a 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 0 c 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 0 g 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0 0

MA1515.1_shift1 (KLF2)
; oligos_7nt_mkv4_m5 versus MA1515.1 (KLF2); m=12/13; ncol2=11; w=11; offset=1; strand=D; shift=1; score= 0.521; -srCCmCrCCCw----- ; cor=; Ncor= a 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 0 0 c 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 0 0 g 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 0 0 t 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0 0 0

MA1630.1_rc_shift5 (Znf281_rc)
; oligos_7nt_mkv4_m5 versus MA1630.1_rc (Znf281_rc); m=13/13; ncol2=11; w=10; offset=5; strand=R; shift=5; score=0.509094; -----CcTCCCCCAcc- ; cor=; Ncor= a 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 0 c 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 0 g 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 0 t 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m7_shift0 ; 22 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m7_shift0 (positions_7nt_m7positions_7nt_m7)
; positions_7nt_m7 (positions_7nt_m7positions_7nt_m7); m=0 (reference); ncol1=16; shift=0; ncol=18; ssgcaGCAGCTGCyss-- ; Alignment reference a 274 302 319 125 858 41 2 1331 5 6 6 4 14 245 278 204 0 0 c 475 400 314 810 115 16 1371 11 8 1358 16 0 1297 508 360 532 0 0 g 359 444 560 295 175 1314 5 9 1361 12 17 1373 19 172 526 359 0 0 t 270 232 185 148 230 7 0 27 4 2 1339 1 48 453 214 283 0 0

MA1529.1_shift0 (NHLH2)
; positions_7nt_m7 versus MA1529.1 (NHLH2); m=1/21; ncol2=18; w=16; offset=0; strand=D; shift=0; score=0.716383; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_7nt_m7 versus MA0500.2_rc (MYOG_rc); m=2/21; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.694466; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; positions_7nt_m7 versus MA1631.1 (ASCL1(var.2)); m=3/21; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.656733; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0830.2_shift3 (TCF4)
; positions_7nt_m7 versus MA0830.2 (TCF4); m=4/21; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.641906; ---cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA1485.1_shift2 (FERD3L)
; positions_7nt_m7 versus MA1485.1 (FERD3L); m=5/21; ncol2=14; w=14; offset=2; strand=D; shift=2; score= 0.6162; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0521.1_shift4 (Tcf12)
; positions_7nt_m7 versus MA0521.1 (Tcf12); m=6/21; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.59724; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA0816.1_shift4 (Ascl2)
; positions_7nt_m7 versus MA0816.1 (Ascl2); m=7/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.59234; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; positions_7nt_m7 versus MA1619.1 (Ptf1a(var.2)); m=8/21; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.590085; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1100.2_shift4 (ASCL1)
; positions_7nt_m7 versus MA1100.2 (ASCL1); m=9/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.583992; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA0499.2_shift3 (MYOD1)
; positions_7nt_m7 versus MA0499.2 (MYOD1); m=10/21; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.582345; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; positions_7nt_m7 versus MA1641.1_rc (MYF5_rc); m=11/21; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.581745; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; positions_7nt_m7 versus MA0048.2_rc (NHLH1_rc); m=12/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.578411; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; positions_7nt_m7 versus MA1635.1 (BHLHE22(var.2)); m=13/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.559762; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; positions_7nt_m7 versus MA1472.1 (BHLHA15(var.2)); m=14/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.530304; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; positions_7nt_m7 versus MA1648.1_rc (TCF12(var.2)_rc); m=15/21; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.518469; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0522.3_shift4 (TCF3)
; positions_7nt_m7 versus MA0522.3 (TCF3); m=16/21; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.512183; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; positions_7nt_m7 versus MA1467.1 (ATOH1(var.2)); m=17/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.489983; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; positions_7nt_m7 versus MA0691.1 (TFAP4); m=18/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.47508; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; positions_7nt_m7 versus MA0665.1_rc (MSC_rc); m=19/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.455579; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA1558.1_rc_shift4 (SNAI1_rc)
; positions_7nt_m7 versus MA1558.1_rc (SNAI1_rc); m=20/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.449471; ----yrCACCTGyh---- ; cor=; Ncor= a 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0

MA1559.1_shift4 (SNAI3)
; positions_7nt_m7 versus MA1559.1 (SNAI3); m=21/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.439035; ----arCAGGTGya---- ; cor=; Ncor= a 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m46_shift6 ; 15 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m46_shift6 (oligos_6nt_mkv3_m46oligos_6nt_mkv3_m46)
; oligos_6nt_mkv3_m46 (oligos_6nt_mkv3_m46oligos_6nt_mkv3_m46); m=0 (reference); ncol1=10; shift=6; ncol=16; ------ssTGACCAsm ; Alignment reference a 0 0 0 0 0 0 92 77 0 0 457 0 0 454 58 164 c 0 0 0 0 0 0 119 206 1 0 0 457 457 0 186 145 g 0 0 0 0 0 0 144 141 0 456 0 0 0 3 151 86 t 0 0 0 0 0 0 102 33 456 1 0 0 0 0 62 62

MA1535.1_rc_shift7 (NR2C1_rc)
; oligos_6nt_mkv3_m46 versus MA1535.1_rc (NR2C1_rc); m=1/14; ncol2=9; w=9; offset=1; strand=R; shift=7; score=0.716285; -------rTGACCyyk ; cor=; Ncor= a 0 0 0 0 0 0 0 2499.0 0.0 0.0 9622.0 0.0 297.0 55.0 1316.0 2225.0 c 0 0 0 0 0 0 0 2039.0 1716.0 321.0 271.0 9622.0 9622.0 4756.0 5587.0 1997.0 g 0 0 0 0 0 0 0 2786.0 0.0 9622.0 0.0 0.0 0.0 227.0 1225.0 2848.0 t 0 0 0 0 0 0 0 2298.0 9622.0 0.0 0.0 0.0 0.0 4866.0 4035.0 2552.0

MA1536.1_rc_shift7 (NR2C2(var.2)_rc)
; oligos_6nt_mkv3_m46 versus MA1536.1_rc (NR2C2(var.2)_rc); m=2/14; ncol2=8; w=8; offset=1; strand=R; shift=7; score=0.604426; -------dYGACCyy- ; cor=; Ncor= a 0 0 0 0 0 0 0 5122.0 0.0 4406.0 18628.0 4790.0 1341.0 0.0 2861.0 0 c 0 0 0 0 0 0 0 3684.0 6639.0 1643.0 1588.0 18628.0 18628.0 8395.0 6420.0 0 g 0 0 0 0 0 0 0 4757.0 0.0 18628.0 0.0 0.0 236.0 719.0 3111.0 0 t 0 0 0 0 0 0 0 5065.0 18628.0 0.0 0.0 0.0 0.0 10232.0 6236.0 0

MA0017.2_rc_shift4 (NR2F1_rc)
; oligos_6nt_mkv3_m46 versus MA0017.2_rc (NR2F1_rc); m=3/14; ncol2=13; w=10; offset=-2; strand=R; shift=4; score=0.570209; ----CyykTGACCYyt ; cor=; Ncor= a 0 0 0 0 3466.0 2427.0 1469.0 2270.0 0.0 0.0 12059.0 0.0 0.0 0.0 469.0 1948.0 c 0 0 0 0 36863.0 3886.0 4395.0 1618.0 91.0 0.0 0.0 12059.0 12059.0 3791.0 4869.0 1153.0 g 0 0 0 0 2912.0 2470.0 2966.0 3055.0 0.0 12059.0 0.0 0.0 30.0 0.0 387.0 1692.0 t 0 0 0 0 5681.0 3276.0 3229.0 5116.0 12059.0 0.0 0.0 0.0 0.0 8496.0 6333.0 7266.0

MA1150.1_rc_shift7 (RORB_rc)
; oligos_6nt_mkv3_m46 versus MA1150.1_rc (RORB_rc); m=4/14; ncol2=11; w=9; offset=1; strand=R; shift=7; score=0.566021; -------rTGACCyaa ; cor=; Ncor= a 0 0 0 0 0 0 0 324.0 26.0 155.0 776.0 27.0 52.0 26.0 547.0 403.0 c 0 0 0 0 0 0 0 145.0 63.0 17.0 50.0 928.0 907.0 358.0 235.0 201.0 g 0 0 0 0 0 0 0 326.0 15.0 781.0 146.0 13.0 25.0 14.0 165.0 162.0 t 0 0 0 0 0 0 0 205.0 896.0 47.0 28.0 32.0 16.0 602.0 53.0 233.0

MA1110.1_shift4 (NR1H4)
; oligos_6nt_mkv3_m46 versus MA1110.1 (NR1H4); m=5/14; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.542712; ----tcAATGACCyh- ; cor=; Ncor= a 0 0 0 0 76.0 68.0 461.0 413.0 3.0 24.0 455.0 26.0 12.0 72.0 135.0 0 c 0 0 0 0 83.0 240.0 10.0 28.0 15.0 7.0 22.0 468.0 476.0 135.0 131.0 0 g 0 0 0 0 117.0 87.0 12.0 36.0 6.0 462.0 14.0 0.0 6.0 81.0 105.0 0 t 0 0 0 0 229.0 110.0 22.0 28.0 481.0 12.0 14.0 11.0 11.0 217.0 134.0 0

MA0014.3_shift3 (PAX5)
; oligos_6nt_mkv3_m46 versus MA0014.3 (PAX5); m=6/14; ncol2=12; w=9; offset=-3; strand=D; shift=3; score=0.53291; ---rrGCGTGACCmb- ; cor=; Ncor= a 0 0 0 540.0 625.0 18.0 18.0 111.0 94.0 16.0 1243.0 32.0 69.0 377.0 263.0 0 c 0 0 0 179.0 148.0 151.0 1276.0 35.0 88.0 37.0 39.0 1305.0 1081.0 405.0 403.0 0 g 0 0 0 578.0 354.0 1231.0 34.0 1243.0 30.0 1355.0 70.0 57.0 118.0 312.0 359.0 0 t 0 0 0 115.0 285.0 12.0 84.0 23.0 1200.0 4.0 60.0 18.0 144.0 318.0 387.0 0

MA0071.1_rc_shift8 (RORA_rc)
; oligos_6nt_mkv3_m46 versus MA0071.1_rc (RORA_rc); m=7/14; ncol2=10; w=8; offset=2; strand=R; shift=8; score=0.50902; --------TGACCTwg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 0.0 25.0 0.0 0.0 0.0 7.0 3.0 c 0 0 0 0 0 0 0 0 0.0 0.0 0.0 25.0 25.0 4.0 5.0 4.0 g 0 0 0 0 0 0 0 0 0.0 25.0 0.0 0.0 0.0 0.0 2.0 12.0 t 0 0 0 0 0 0 0 0 25.0 0.0 0.0 0.0 0.0 21.0 11.0 6.0

MA0067.1_rc_shift5 (Pax2_rc)
; oligos_6nt_mkv3_m46 versus MA0067.1_rc (Pax2_rc); m=8/14; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=0.472032; -----vmrTGAcw--- ; cor=; Ncor= a 0 0 0 0 0 8.0 10.0 11.0 1.0 2.0 26.0 2.0 9.0 0 0 0 c 0 0 0 0 0 11.0 19.0 1.0 3.0 1.0 0.0 21.0 5.0 0 0 0 g 0 0 0 0 0 11.0 0.0 17.0 1.0 28.0 2.0 1.0 7.0 0 0 0 t 0 0 0 0 0 1.0 2.0 2.0 26.0 0.0 3.0 7.0 10.0 0 0 0

MA1556.1_rc_shift1 (RXRG(var.2)_rc)
; oligos_6nt_mkv3_m46 versus MA1556.1_rc (RXRG(var.2)_rc); m=9/14; ncol2=14; w=9; offset=-5; strand=R; shift=1; score=0.429574; -rrGGTCrTGACCyy- ; cor=; Ncor= a 0 761.0 1235.0 37.0 64.0 119.0 26.0 1279.0 0.0 16.0 2117.0 99.0 0.0 0.0 79.0 0 c 0 226.0 57.0 176.0 63.0 78.0 2117.0 0.0 0.0 1.0 33.0 2117.0 2117.0 853.0 1071.0 0 g 0 996.0 882.0 2117.0 2117.0 214.0 55.0 838.0 15.0 2117.0 5.0 31.0 107.0 7.0 164.0 0 t 0 135.0 23.0 144.0 144.0 2117.0 64.0 0.0 2117.0 0.0 12.0 7.0 0.0 1264.0 803.0 0

MA1555.1_shift1 (RXRB(var.2))
; oligos_6nt_mkv3_m46 versus MA1555.1 (RXRB(var.2)); m=10/14; ncol2=14; w=9; offset=-5; strand=D; shift=1; score=0.422438; -rrGGTCrTGACCyy- ; cor=; Ncor= a 0 614.0 934.0 59.0 27.0 35.0 23.0 1207.0 11.0 92.0 1803.0 309.0 58.0 18.0 124.0 0 c 0 190.0 59.0 29.0 39.0 85.0 1803.0 15.0 59.0 35.0 53.0 1803.0 1803.0 866.0 868.0 0 g 0 851.0 870.0 1803.0 1803.0 157.0 41.0 596.0 0.0 1803.0 41.0 11.0 32.0 14.0 194.0 0 t 0 148.0 15.0 103.0 270.0 1803.0 123.0 7.0 1803.0 8.0 14.0 23.0 58.0 937.0 617.0 0

MA1538.1_shift0 (NR2F1(var.3))
; oligos_6nt_mkv3_m46 versus MA1538.1 (NR2F1(var.3)); m=11/14; ncol2=15; w=9; offset=-6; strand=D; shift=0; score=0.421699; rrGGTCRtTGACCYy- ; cor=; Ncor= a 1651.0 2466.0 44.0 75.0 22.0 20.0 2473.0 813.0 0.0 81.0 3515.0 0.0 131.0 57.0 308.0 0 c 280.0 75.0 121.0 45.0 87.0 3515.0 58.0 855.0 89.0 15.0 95.0 3515.0 3515.0 949.0 1177.0 0 g 1271.0 1049.0 3515.0 3515.0 232.0 58.0 1041.0 858.0 52.0 3515.0 0.0 1.0 75.0 32.0 205.0 0 t 312.0 79.0 356.0 67.0 3515.0 171.0 4.0 990.0 3515.0 12.0 0.0 45.0 50.0 2566.0 1825.0 0

MA1539.1_shift0 (NR2F6(var.3))
; oligos_6nt_mkv3_m46 versus MA1539.1 (NR2F6(var.3)); m=12/14; ncol2=15; w=9; offset=-6; strand=D; shift=0; score=0.414457; rAGGTCAbTGACCTy- ; cor=; Ncor= a 6349.0 8959.0 31.0 38.0 26.0 4.0 9114.0 2492.0 66.0 387.0 11749.0 159.0 82.0 23.0 910.0 0 c 727.0 26.0 1.0 12.0 78.0 11749.0 39.0 3333.0 333.0 206.0 255.0 11749.0 11749.0 2844.0 3745.0 0 g 3736.0 2789.0 11749.0 11749.0 253.0 216.0 2634.0 2972.0 67.0 11749.0 107.0 0.0 9.0 26.0 718.0 0 t 937.0 20.0 124.0 145.0 11749.0 443.0 46.0 2952.0 11749.0 9.0 3.0 36.0 24.0 8905.0 6376.0 0

MA1147.1_shift0 (NR4A2::RXRA)
; oligos_6nt_mkv3_m46 versus MA1147.1 (NR4A2::RXRA); m=13/14; ncol2=15; w=9; offset=-6; strand=D; shift=0; score=0.404057; rrGGTCrtTGACCyc- ; cor=; Ncor= a 288.0 498.0 20.0 51.0 46.0 7.0 592.0 248.0 2.0 70.0 926.0 157.0 40.0 5.0 104.0 0 c 212.0 124.0 11.0 7.0 134.0 824.0 38.0 60.0 69.0 82.0 54.0 830.0 937.0 535.0 473.0 0 g 371.0 348.0 924.0 804.0 128.0 31.0 343.0 87.0 5.0 836.0 17.0 2.0 4.0 23.0 180.0 0 t 130.0 29.0 46.0 139.0 691.0 138.0 27.0 604.0 924.0 12.0 3.0 11.0 20.0 437.0 244.0 0

MA1151.1_rc_shift8 (RORC_rc)
; oligos_6nt_mkv3_m46 versus MA1151.1_rc (RORC_rc); m=14/14; ncol2=12; w=8; offset=2; strand=R; shift=8; score=0.402715; --------TGaCCyAc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 42.0 153.0 661.0 8.0 74.0 11.0 753.0 249.0 c 0 0 0 0 0 0 0 0 161.0 19.0 168.0 952.0 919.0 343.0 116.0 277.0 g 0 0 0 0 0 0 0 0 12.0 822.0 112.0 3.0 2.0 24.0 87.0 249.0 t 0 0 0 0 0 0 0 0 785.0 6.0 59.0 36.0 5.0 623.0 43.0 225.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m24_shift3 ; 15 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m24_shift3 (oligos_6nt_mkv3_m24oligos_6nt_mkv3_m24)
; oligos_6nt_mkv3_m24 (oligos_6nt_mkv3_m24oligos_6nt_mkv3_m24); m=0 (reference); ncol1=10; shift=3; ncol=14; ---sgCGCACGss- ; Alignment reference a 0 0 0 14 31 0 0 4 132 0 0 16 31 0 c 0 0 0 94 42 180 0 157 6 180 0 91 49 0 g 0 0 0 50 94 0 180 3 40 0 180 46 87 0 t 0 0 0 22 13 0 0 16 2 0 0 27 13 0

MA0506.1_rc_shift3 (NRF1_rc)
; oligos_6nt_mkv3_m24 versus MA0506.1_rc (NRF1_rc); m=1/14; ncol2=11; w=10; offset=0; strand=R; shift=3; score=0.715631; ---yGCGCAkGCGC ; cor=; Ncor= a 0 0 0 0.0 0.0 0.0 286.0 0.0 3693.0 313.0 140.0 0.0 0.0 0.0 c 0 0 0 1575.0 0.0 4275.0 0.0 4624.0 528.0 935.0 468.0 4239.0 0.0 3647.0 g 0 0 0 804.0 4550.0 349.0 4338.0 0.0 403.0 1862.0 4016.0 189.0 4001.0 375.0 t 0 0 0 2245.0 74.0 0.0 0.0 0.0 0.0 1514.0 0.0 196.0 623.0 602.0

MA0472.2_shift2 (EGR2)
; oligos_6nt_mkv3_m24 versus MA0472.2 (EGR2); m=2/14; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.640203; --mCGCCCACGCa- ; cor=; Ncor= a 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 c 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 g 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 t 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0

MA1106.1_rc_shift4 (HIF1A_rc)
; oligos_6nt_mkv3_m24 versus MA1106.1_rc (HIF1A_rc); m=3/14; ncol2=10; w=9; offset=1; strand=R; shift=4; score=0.614495; ----ssGCACGTvc ; cor=; Ncor= a 0 0 0 0 230.0 227.0 35.0 11.0 934.0 0.0 1.0 2.0 342.0 140.0 c 0 0 0 0 271.0 257.0 20.0 844.0 11.0 979.0 0.0 2.0 263.0 414.0 g 0 0 0 0 315.0 290.0 837.0 41.0 33.0 0.0 979.0 0.0 270.0 229.0 t 0 0 0 0 164.0 206.0 88.0 84.0 2.0 1.0 0.0 976.0 105.0 197.0

MA0131.2_rc_shift2 (HINFP_rc)
; oligos_6nt_mkv3_m24 versus MA0131.2_rc (HINFP_rc); m=4/14; ncol2=12; w=10; offset=-1; strand=R; shift=2; score=0.59753; --mcGCGGACGytg ; cor=; Ncor= a 0 0 107.0 97.0 12.0 21.0 3.0 0.0 470.0 10.0 7.0 17.0 53.0 100.0 c 0 0 154.0 188.0 15.0 472.0 0.0 13.0 0.0 484.0 97.0 217.0 113.0 106.0 g 0 0 84.0 55.0 395.0 31.0 413.0 404.0 0.0 14.0 388.0 45.0 131.0 340.0 t 0 0 77.0 85.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 276.0 285.0 23.0

MA1650.1_shift0 (ZBTB14)
; oligos_6nt_mkv3_m24 versus MA1650.1 (ZBTB14); m=5/14; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.58355; ssCCGCGCACss-- ; cor=; Ncor= a 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 0 0 c 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 0 0 g 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 0 0 t 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0 0 0

MA0632.2_rc_shift4 (TCFL5_rc)
; oligos_6nt_mkv3_m24 versus MA0632.2_rc (TCFL5_rc); m=6/14; ncol2=10; w=9; offset=1; strand=R; shift=4; score=0.579735; ----gkGCGCGyGm ; cor=; Ncor= a 0 0 0 0 8670.0 25921.0 635.0 0.0 15451.0 0.0 1643.0 9359.0 0.0 36854.0 c 0 0 0 0 5747.0 19096.0 4594.0 72543.0 0.0 72543.0 0.0 29710.0 0.0 22297.0 g 0 0 0 0 47538.0 44394.0 72543.0 657.0 57092.0 0.0 72543.0 0.0 72543.0 10582.0 t 0 0 0 0 10588.0 72543.0 1593.0 3520.0 1765.0 1566.0 0.0 72543.0 0.0 2810.0

MA0006.1_rc_shift7 (Ahr::Arnt_rc)
; oligos_6nt_mkv3_m24 versus MA0006.1_rc (Ahr::Arnt_rc); m=7/14; ncol2=6; w=6; offset=4; strand=R; shift=7; score=0.550448; -------CACGCr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 11.0 0 c 0 0 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 2.0 0 g 0 0 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 8.0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 3.0 0

MA0259.1_rc_shift6 (ARNT::HIF1A_rc)
; oligos_6nt_mkv3_m24 versus MA0259.1_rc (ARNT::HIF1A_rc); m=8/14; ncol2=8; w=7; offset=3; strand=R; shift=6; score=0.53678; ------gCACGTvb ; cor=; Ncor= a 0 0 0 0 0 0 15.0 0.0 104.0 0.0 1.0 1.0 31.0 0.0 c 0 0 0 0 0 0 20.0 104.0 0.0 104.0 0.0 23.0 34.0 49.0 g 0 0 0 0 0 0 51.0 0.0 0.0 0.0 103.0 2.0 29.0 28.0 t 0 0 0 0 0 0 18.0 0.0 0.0 0.0 0.0 78.0 10.0 27.0

MA0162.4_shift0 (EGR1)
; oligos_6nt_mkv3_m24 versus MA0162.4 (EGR1); m=9/14; ncol2=14; w=10; offset=-3; strand=D; shift=0; score=0.512469; ccmCGCCCACgCms ; cor=; Ncor= a 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 3809.0 c 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 13686.0 g 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 7852.0 t 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0 5251.0

MA1560.1_shift5 (SOHLH2)
; oligos_6nt_mkv3_m24 versus MA1560.1 (SOHLH2); m=10/14; ncol2=10; w=8; offset=2; strand=D; shift=5; score=0.507522; -----ygCACGTGc ; cor=; Ncor= a 0 0 0 0 0 230.0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 c 0 0 0 0 0 485.0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 g 0 0 0 0 0 184.0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 t 0 0 0 0 0 313.0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0

MA0004.1_rc_shift7 (Arnt_rc)
; oligos_6nt_mkv3_m24 versus MA0004.1_rc (Arnt_rc); m=11/14; ncol2=6; w=6; offset=4; strand=R; shift=7; score=0.497017; -------CACGTG- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 20.0 0.0 0.0 0.0 0.0 0 c 0 0 0 0 0 0 0 20.0 0.0 20.0 0.0 1.0 0.0 0 g 0 0 0 0 0 0 0 0.0 0.0 0.0 20.0 0.0 16.0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 19.0 4.0 0

MA1099.2_rc_shift5 (HES1_rc)
; oligos_6nt_mkv3_m24 versus MA1099.2_rc (HES1_rc); m=12/14; ncol2=10; w=8; offset=2; strand=R; shift=5; score=0.488813; -----gvCACGyGc ; cor=; Ncor= a 0 0 0 0 0 3216.0 4837.0 53.0 18526.0 0.0 791.0 232.0 18.0 8007.0 c 0 0 0 0 0 6013.0 6360.0 18526.0 0.0 18526.0 0.0 9081.0 0.0 18526.0 g 0 0 0 0 0 12513.0 6203.0 0.0 4057.0 0.0 18526.0 0.0 18526.0 2072.0 t 0 0 0 0 0 2742.0 1126.0 1.0 253.0 21.0 0.0 9446.0 464.0 5858.0

MA0622.1_shift6 (Mlxip)
; oligos_6nt_mkv3_m24 versus MA0622.1 (Mlxip); m=13/14; ncol2=8; w=7; offset=3; strand=D; shift=6; score=0.476793; ------bCACGTGk ; cor=; Ncor= a 0 0 0 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 c 0 0 0 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 g 0 0 0 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 t 0 0 0 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0

MA0616.2_rc_shift5 (HES2_rc)
; oligos_6nt_mkv3_m24 versus MA0616.2_rc (HES2_rc); m=14/14; ncol2=10; w=8; offset=2; strand=R; shift=5; score=0.475829; -----grCACGTGc ; cor=; Ncor= a 0 0 0 0 0 1319.0 3849.0 0.0 8483.0 0.0 129.0 0.0 73.0 1581.0 c 0 0 0 0 0 1735.0 1289.0 8483.0 0.0 8483.0 0.0 2028.0 85.0 8483.0 g 0 0 0 0 0 4464.0 4634.0 15.0 1098.0 0.0 8483.0 0.0 8483.0 1107.0 t 0 0 0 0 0 966.0 512.0 53.0 0.0 0.0 0.0 6455.0 118.0 1501.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m26_shift2 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m26_shift2 (oligos_7nt_mkv4_m26oligos_7nt_mkv4_m26)
; oligos_7nt_mkv4_m26 (oligos_7nt_mkv4_m26oligos_7nt_mkv4_m26); m=0 (reference); ncol1=12; shift=2; ncol=14; --ssGCGGGCGCss ; Alignment reference a 0 0 68 63 6 13 9 14 6 9 7 8 56 51 c 0 0 136 157 33 413 19 66 40 403 14 378 138 131 g 0 0 184 163 401 11 416 351 395 27 419 58 211 205 t 0 0 59 64 7 10 3 16 6 8 7 3 42 60

MA0131.2_rc_shift2 (HINFP_rc)
; oligos_7nt_mkv4_m26 versus MA0131.2_rc (HINFP_rc); m=1/6; ncol2=12; w=12; offset=0; strand=R; shift=2; score=0.714664; --mcGCGGACGytg ; cor=; Ncor= a 0 0 107.0 97.0 12.0 21.0 3.0 0.0 470.0 10.0 7.0 17.0 53.0 100.0 c 0 0 154.0 188.0 15.0 472.0 0.0 13.0 0.0 484.0 97.0 217.0 113.0 106.0 g 0 0 84.0 55.0 395.0 31.0 413.0 404.0 0.0 14.0 388.0 45.0 131.0 340.0 t 0 0 77.0 85.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 276.0 285.0 23.0

MA0506.1_shift2 (NRF1)
; oligos_7nt_mkv4_m26 versus MA0506.1 (NRF1); m=2/6; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.671353; --GCGCmTGCGCr- ; cor=; Ncor= a 0 0 602.0 623.0 196.0 0.0 1514.0 0.0 0.0 0.0 0.0 74.0 2245.0 0 c 0 0 375.0 4001.0 189.0 4016.0 1862.0 403.0 0.0 4338.0 349.0 4550.0 804.0 0 g 0 0 3647.0 0.0 4239.0 468.0 935.0 528.0 4624.0 0.0 4275.0 0.0 1575.0 0 t 0 0 0.0 0.0 0.0 140.0 313.0 3693.0 0.0 286.0 0.0 0.0 0.0 0

MA0162.4_rc_shift0 (EGR1_rc)
; oligos_7nt_mkv4_m26 versus MA0162.4_rc (EGR1_rc); m=3/6; ncol2=14; w=12; offset=-2; strand=R; shift=0; score=0.620196; skGcGTGGGCGkgg ; cor=; Ncor= a 5251.0 4909.0 2276.0 2552.0 239.0 759.0 628.0 382.0 368.0 2120.0 797.0 1933.0 4641.0 5280.0 c 7852.0 6345.0 2157.0 20544.0 699.0 2122.0 698.0 1455.0 665.0 22237.0 756.0 3854.0 7211.0 6621.0 g 13686.0 10441.0 25196.0 2806.0 29507.0 5420.0 28958.0 27321.0 29338.0 1131.0 28403.0 10303.0 14749.0 11610.0 t 3809.0 8903.0 969.0 4696.0 153.0 22297.0 314.0 1440.0 227.0 5110.0 642.0 14508.0 3997.0 7087.0

MA1516.1_rc_shift5 (KLF3_rc)
; oligos_7nt_mkv4_m26 versus MA1516.1_rc (KLF3_rc); m=4/6; ncol2=11; w=9; offset=3; strand=R; shift=5; score=0.471083; -----wGGGCGyGG ; cor=; Ncor= a 0 0 0 0 0 14617.0 1218.0 0.0 0.0 1212.0 1409.0 419.0 335.0 705.0 c 0 0 0 0 0 1514.0 48.0 29.0 31.0 43259.0 21.0 16503.0 248.0 1954.0 g 0 0 0 0 0 10099.0 43259.0 43259.0 43259.0 334.0 43259.0 707.0 43259.0 43259.0 t 0 0 0 0 0 17029.0 77.0 83.0 202.0 4245.0 2261.0 26757.0 298.0 1442.0

MA1513.1_rc_shift0 (KLF15_rc)
; oligos_7nt_mkv4_m26 versus MA1513.1_rc (KLF15_rc); m=5/6; ncol2=11; w=9; offset=-2; strand=R; shift=0; score=0.470773; sgGGGCGGGgs--- ; cor=; Ncor= a 2165.0 1602.0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 1744.0 0 0 0 c 3124.0 1934.0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 5538.0 0 0 0 g 5013.0 6267.0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 2903.0 0 0 0 t 1067.0 1566.0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 1184.0 0 0 0

MA0632.2_rc_shift6 (TCFL5_rc)
; oligos_7nt_mkv4_m26 versus MA0632.2_rc (TCFL5_rc); m=6/6; ncol2=10; w=8; offset=4; strand=R; shift=6; score=0.447516; ------gkGCGCGy ; cor=; Ncor= a 0 0 0 0 0 0 8670.0 25921.0 635.0 0.0 15451.0 0.0 1643.0 9359.0 c 0 0 0 0 0 0 5747.0 19096.0 4594.0 72543.0 0.0 72543.0 0.0 29710.0 g 0 0 0 0 0 0 47538.0 44394.0 72543.0 657.0 57092.0 0.0 72543.0 0.0 t 0 0 0 0 0 0 10588.0 72543.0 1593.0 3520.0 1765.0 1566.0 0.0 72543.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m9_shift1 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m9_shift1 (oligos_7nt_mkv4_m9oligos_7nt_mkv4_m9)
; oligos_7nt_mkv4_m9 (oligos_7nt_mkv4_m9oligos_7nt_mkv4_m9); m=0 (reference); ncol1=12; shift=1; ncol=13; -ssGCCAGCCCss ; Alignment reference a 0 27 42 4 1 0 186 2 1 0 2 42 44 c 0 101 76 20 222 219 27 0 226 223 219 72 62 g 0 62 66 198 4 8 13 222 0 4 7 68 92 t 0 38 44 6 1 1 2 4 1 1 0 46 30

MA1513.1_shift2 (KLF15)
; oligos_7nt_mkv4_m9 versus MA1513.1 (KLF15); m=1/3; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.714224; --scCCCGCCCcs ; cor=; Ncor= a 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 c 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 g 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 t 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0

MA0597.1_shift5 (THAP1)
; oligos_7nt_mkv4_m9 versus MA0597.1 (THAP1); m=2/3; ncol2=9; w=8; offset=4; strand=D; shift=5; score= 0.4617; -----ytGCCMky ; cor=; Ncor= a 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 c 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 g 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 t 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0

MA0671.1_shift0 (NFIX)
; oligos_7nt_mkv4_m9 versus MA0671.1 (NFIX); m=3/3; ncol2=9; w=8; offset=-1; strand=D; shift=0; score=0.441171; sgtGCCArv---- ; cor=; Ncor= a 7951.0 7832.0 11279.0 132.0 3.0 0.0 32864.0 32864.0 8251.0 0 0 0 0 c 8810.0 6134.0 9695.0 186.0 32864.0 32864.0 2230.0 1356.0 9039.0 0 0 0 0 g 8725.0 10855.0 5911.0 32864.0 3257.0 0.0 180.0 12688.0 9135.0 0 0 0 0 t 7378.0 8043.0 32864.0 2539.0 29.0 0.0 110.0 2399.0 6439.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m20_shift1 ; 28 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m20_shift1 (oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20)
; oligos_7nt_mkv4_m20 (oligos_7nt_mkv4_m20oligos_7nt_mkv4_m20); m=0 (reference); ncol1=16; shift=1; ncol=20; -csCGCCCCGCCCCCsc--- ; Alignment reference a 0 14 21 10 2 2 3 6 2 2 2 2 4 10 5 18 16 0 0 0 c 0 105 91 159 12 177 169 163 186 12 181 173 169 158 154 71 103 0 0 0 g 0 45 55 19 164 11 18 20 4 172 9 17 16 17 28 72 47 0 0 0 t 0 31 28 7 17 5 5 6 3 9 3 3 6 10 8 34 29 0 0 0

MA0685.1_shift1 (SP4)
; oligos_7nt_mkv4_m20 versus MA0685.1 (SP4); m=1/27; ncol2=17; w=16; offset=0; strand=D; shift=1; score=0.713328; -ywrGCCACGCCCmCtyy-- ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 967.0 0 0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 1180.0 0 0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 556.0 0 0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0 1509.0 0 0

MA0516.2_shift0 (SP2)
; oligos_7nt_mkv4_m20 versus MA0516.2 (SP2); m=2/27; ncol2=17; w=16; offset=-1; strand=D; shift=0; score=0.709533; mTAAGyCCCGCCCmCyy--- ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 0 0 0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 0 0 0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 0 0 0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0 0 0 0

MA0079.4_shift1 (SP1)
; oligos_7nt_mkv4_m20 versus MA0079.4 (SP1); m=3/27; ncol2=15; w=15; offset=0; strand=D; shift=1; score=0.708686; -ywrRCCACGCCCmCh---- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 0 0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 0 0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 0 0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0 0 0 0

MA0746.2_shift3 (SP3)
; oligos_7nt_mkv4_m20 versus MA0746.2 (SP3); m=4/27; ncol2=13; w=13; offset=2; strand=D; shift=3; score=0.66951; ---srCCACGCCCmCy---- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 0 0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 0 0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 0 0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0 0 0 0

MA1513.1_shift4 (KLF15)
; oligos_7nt_mkv4_m20 versus MA1513.1 (KLF15); m=5/27; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.645151; ----scCCCGCCCcs----- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0 0 0

MA0740.1_shift3 (KLF14)
; oligos_7nt_mkv4_m20 versus MA0740.1 (KLF14); m=6/27; ncol2=14; w=14; offset=2; strand=D; shift=3; score=0.643916; ---krcCACGCCCmYyt--- ; cor=; Ncor= a 0 0 0 430.0 1205.0 526.0 0.0 1708.0 2.0 69.0 0.0 0.0 0.0 716.0 32.0 280.0 649.0 0 0 0 c 0 0 0 215.0 73.0 1360.0 1599.0 136.0 1596.0 36.0 1602.0 1604.0 1609.0 961.0 1463.0 594.0 741.0 0 0 0 g 0 0 0 966.0 2280.0 96.0 10.0 58.0 0.0 2939.0 3.0 3.0 4.0 1.0 15.0 89.0 314.0 0 0 0 t 0 0 0 693.0 71.0 404.0 248.0 5.0 2.0 31.0 0.0 6.0 65.0 31.0 559.0 1041.0 1670.0 0 0 0

MA1564.1_shift4 (SP9)
; oligos_7nt_mkv4_m20 versus MA1564.1 (SP9); m=7/27; ncol2=12; w=12; offset=3; strand=D; shift=4; score=0.634894; ----rcCmCGCCCmcy---- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 0 0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 0 0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 0 0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0 0 0 0

MA1653.1_shift3 (ZNF148)
; oligos_7nt_mkv4_m20 versus MA1653.1 (ZNF148); m=8/27; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.612382; ---ysCCCCTCCCcc----- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0 0 0 0

MA0753.2_shift2 (ZNF740)
; oligos_7nt_mkv4_m20 versus MA0753.2 (ZNF740); m=9/27; ncol2=13; w=13; offset=1; strand=D; shift=2; score=0.610937; --cyrCCCCCCCCAc----- ; cor=; Ncor= a 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 0 0 0 0 c 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 0 0 0 0 g 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 0 0 0 0 t 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0 0 0 0 0

MA0741.1_shift4 (KLF16)
; oligos_7nt_mkv4_m20 versus MA0741.1 (KLF16); m=10/27; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.598925; ----gmCMCgCCCMC----- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0 0 0

MA0747.1_shift4 (SP8)
; oligos_7nt_mkv4_m20 versus MA0747.1 (SP8); m=11/27; ncol2=12; w=12; offset=3; strand=D; shift=4; score=0.596898; ----rmCACgCCCmCy---- ; cor=; Ncor= a 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 0 0 0 c 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 0 0 0 g 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 0 0 0 t 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0 0 0 0

MA0039.4_shift3 (KLF4)
; oligos_7nt_mkv4_m20 versus MA0039.4 (KLF4); m=12/27; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.574848; ---ssCCCCACCChs----- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0 0 0 0

MA0599.1_shift4 (KLF5)
; oligos_7nt_mkv4_m20 versus MA0599.1 (KLF5); m=13/27; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.564716; ----gCCMCrCCCh------ ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0 0 0

MA1512.1_shift4 (KLF11)
; oligos_7nt_mkv4_m20 versus MA1512.1 (KLF11); m=14/27; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.556925; ----gcCACGCCCmC----- ; cor=; Ncor= a 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 0 0 c 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 0 0 g 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 0 0 t 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0 0 0

MA1515.1_shift3 (KLF2)
; oligos_7nt_mkv4_m20 versus MA1515.1 (KLF2); m=15/27; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.545363; ---srCCmCrCCCw------ ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0 0 0 0

MA1522.1_shift3 (MAZ)
; oligos_7nt_mkv4_m20 versus MA1522.1 (MAZ); m=16/27; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.52285; ---ssCCCCTCCcc------ ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0 0 0 0

MA1511.1_shift4 (KLF10)
; oligos_7nt_mkv4_m20 versus MA1511.1 (KLF10); m=17/27; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.518247; ----gmCACrCCCmy----- ; cor=; Ncor= a 0 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 0 0 0 c 0 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 0 0 0 g 0 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 0 0 0 t 0 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0 0 0 0

MA0162.4_shift5 (EGR1)
; oligos_7nt_mkv4_m20 versus MA0162.4 (EGR1); m=18/27; ncol2=14; w=12; offset=4; strand=D; shift=5; score=0.516278; -----ccmCGCCCACgCms- ; cor=; Ncor= a 0 0 0 0 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 3809.0 0 c 0 0 0 0 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 13686.0 0 g 0 0 0 0 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 7852.0 0 t 0 0 0 0 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0 5251.0 0

MA1517.1_shift3 (KLF6)
; oligos_7nt_mkv4_m20 versus MA1517.1 (KLF6); m=19/27; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.511375; ---srcCACRCCCm------ ; cor=; Ncor= a 0 0 0 443.0 1035.0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 0 0 0 c 0 0 0 624.0 490.0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 0 0 0 g 0 0 0 626.0 1157.0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 0 0 0 t 0 0 0 499.0 136.0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0 0 0 0

MA1516.1_shift3 (KLF3)
; oligos_7nt_mkv4_m20 versus MA1516.1 (KLF3); m=20/27; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.499334; ---grCCrCGCCCw------ ; cor=; Ncor= a 0 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 0 0 0 0 c 0 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 0 0 0 0 g 0 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 0 0 0 0 t 0 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0 0 0 0 0

MA1627.1_shift5 (Wt1)
; oligos_7nt_mkv4_m20 versus MA1627.1 (Wt1); m=21/27; ncol2=14; w=12; offset=4; strand=D; shift=5; score=0.484356; -----cycCTCCCCCACmc- ; cor=; Ncor= a 0 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 1675.0 520.0 0 c 0 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 1350.0 2023.0 0 g 0 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 928.0 1038.0 0 t 0 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0 738.0 1110.0 0

MA0732.1_shift5 (EGR3)
; oligos_7nt_mkv4_m20 versus MA0732.1 (EGR3); m=22/27; ncol2=15; w=12; offset=4; strand=D; shift=5; score=0.469733; -----yhmCGCCCMCGCAyt ; cor=; Ncor= a 0 0 0 0 0 337.0 444.0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 406.0 396.0 c 0 0 0 0 0 645.0 485.0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 600.0 346.0 g 0 0 0 0 0 278.0 191.0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 110.0 230.0 t 0 0 0 0 0 470.0 540.0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0 549.0 683.0

MA1578.1_shift7 (VEZF1)
; oligos_7nt_mkv4_m20 versus MA1578.1 (VEZF1); m=23/27; ncol2=10; w=10; offset=6; strand=D; shift=7; score=0.441402; -------CCCCCCmytw--- ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 0 0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 0 0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0 0 0

MA1102.2_rc_shift7 (CTCFL_rc)
; oligos_7nt_mkv4_m20 versus MA1102.2_rc (CTCFL_rc); m=24/27; ncol2=12; w=10; offset=6; strand=R; shift=7; score=0.437352; -------scGCCCCCTGsy- ; cor=; Ncor= a 0 0 0 0 0 0 0 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 0 c 0 0 0 0 0 0 0 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 0 g 0 0 0 0 0 0 0 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 0 t 0 0 0 0 0 0 0 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0 0

MA0733.1_shift5 (EGR4)
; oligos_7nt_mkv4_m20 versus MA0733.1 (EGR4); m=25/27; ncol2=16; w=12; offset=4; strand=D; shift=5; score=0.434737; -----yymCGCCCACGCAhw ; cor=; Ncor= a 0 0 0 0 0 1167.0 1143.0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 1721.0 1483.0 c 0 0 0 0 0 1459.0 1664.0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 1399.0 819.0 g 0 0 0 0 0 1004.0 527.0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 409.0 655.0 t 0 0 0 0 0 1953.0 2131.0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0 1778.0 2762.0

MA0472.2_shift7 (EGR2)
; oligos_7nt_mkv4_m20 versus MA0472.2 (EGR2); m=26/27; ncol2=11; w=10; offset=6; strand=D; shift=7; score=0.433491; -------mCGCCCACGCa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 0 c 0 0 0 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 0 g 0 0 0 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 0 t 0 0 0 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0 0

MA1630.1_rc_shift7 (Znf281_rc)
; oligos_7nt_mkv4_m20 versus MA1630.1_rc (Znf281_rc); m=27/27; ncol2=11; w=10; offset=6; strand=R; shift=7; score=0.420458; -------CcTCCCCCAcc-- ; cor=; Ncor= a 0 0 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 0 0 c 0 0 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 0 0 g 0 0 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 0 0 t 0 0 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m1_shift1 ; 16 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m1_shift1 (oligos_8nt_mkv5_m1oligos_8nt_mkv5_m1)
; oligos_8nt_mkv5_m1 (oligos_8nt_mkv5_m1oligos_8nt_mkv5_m1); m=0 (reference); ncol1=15; shift=1; ncol=17; -CcCCCCCmCCCCCcc- ; Alignment reference a 0 58 72 36 7 2 4 6 252 4 2 1 15 46 87 38 0 c 0 414 378 504 580 579 587 585 304 583 582 579 562 479 361 403 0 g 0 62 76 27 5 10 4 3 22 5 8 7 7 46 82 100 0 t 0 61 69 28 3 4 0 1 17 3 3 8 11 24 65 54 0

MA0753.2_shift1 (ZNF740)
; oligos_8nt_mkv5_m1 versus MA0753.2 (ZNF740); m=1/15; ncol2=13; w=13; offset=0; strand=D; shift=1; score=0.713115; -cyrCCCCCCCCAc--- ; cor=; Ncor= a 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 0 0 c 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 0 0 g 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 0 0 t 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0 0 0

MA1653.1_shift2 (ZNF148)
; oligos_8nt_mkv5_m1 versus MA1653.1 (ZNF148); m=2/15; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.686718; --ysCCCCTCCCcc--- ; cor=; Ncor= a 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 0 c 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 0 g 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 0 t 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0 0

MA0039.4_shift2 (KLF4)
; oligos_8nt_mkv5_m1 versus MA0039.4 (KLF4); m=3/15; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.678239; --ssCCCCACCChs--- ; cor=; Ncor= a 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 0 c 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 0 g 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 0 t 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0 0

MA1522.1_shift2 (MAZ)
; oligos_8nt_mkv5_m1 versus MA1522.1 (MAZ); m=4/15; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.588942; --ssCCCCTCCcc---- ; cor=; Ncor= a 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 0 c 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 0 g 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 0 t 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0 0

MA1564.1_shift3 (SP9)
; oligos_8nt_mkv5_m1 versus MA1564.1 (SP9); m=5/15; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.585527; ---rcCmCGCCCmcy-- ; cor=; Ncor= a 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 0 c 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 0 g 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 0 t 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0 0

MA1513.1_shift3 (KLF15)
; oligos_8nt_mkv5_m1 versus MA1513.1 (KLF15); m=6/15; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.582004; ---scCCCGCCCcs--- ; cor=; Ncor= a 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 c 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 g 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 t 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0

MA0741.1_shift3 (KLF16)
; oligos_8nt_mkv5_m1 versus MA0741.1 (KLF16); m=7/15; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.570415; ---gmCMCgCCCMC--- ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0

MA0599.1_shift3 (KLF5)
; oligos_8nt_mkv5_m1 versus MA0599.1 (KLF5); m=8/15; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.561198; ---gCCMCrCCCh---- ; cor=; Ncor= a 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 c 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 g 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0

MA1578.1_shift6 (VEZF1)
; oligos_8nt_mkv5_m1 versus MA1578.1 (VEZF1); m=9/15; ncol2=10; w=10; offset=5; strand=D; shift=6; score=0.543573; ------CCCCCCmytw- ; cor=; Ncor= a 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 c 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 g 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 t 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0

MA1515.1_shift2 (KLF2)
; oligos_8nt_mkv5_m1 versus MA1515.1 (KLF2); m=10/15; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.540518; --srCCmCrCCCw---- ; cor=; Ncor= a 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 0 c 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 0 g 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 0 t 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0 0

MA1512.1_shift5 (KLF11)
; oligos_8nt_mkv5_m1 versus MA1512.1 (KLF11); m=11/15; ncol2=11; w=11; offset=4; strand=D; shift=5; score=0.526184; -----gcCACGCCCmC- ; cor=; Ncor= a 0 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 c 0 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 g 0 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 t 0 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0

MA1627.1_shift4 (Wt1)
; oligos_8nt_mkv5_m1 versus MA1627.1 (Wt1); m=12/15; ncol2=14; w=12; offset=3; strand=D; shift=4; score=0.524684; ----cycCTCCCCCACm ; cor=; Ncor= a 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 1675.0 c 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 1350.0 g 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 928.0 t 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0 738.0

MA1511.1_shift3 (KLF10)
; oligos_8nt_mkv5_m1 versus MA1511.1 (KLF10); m=13/15; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.51793; ---gmCACrCCCmy--- ; cor=; Ncor= a 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 0 c 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 0 g 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 0 t 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0 0

MA0747.1_shift5 (SP8)
; oligos_8nt_mkv5_m1 versus MA0747.1 (SP8); m=14/15; ncol2=12; w=11; offset=4; strand=D; shift=5; score=0.508485; -----rmCACgCCCmCy ; cor=; Ncor= a 0 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 c 0 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 g 0 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 t 0 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0

MA1630.1_rc_shift0 (Znf281_rc)
; oligos_8nt_mkv5_m1 versus MA1630.1_rc (Znf281_rc); m=15/15; ncol2=11; w=10; offset=-1; strand=R; shift=0; score=0.494143; CcTCCCCCAcc------ ; cor=; Ncor= a 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 0 0 0 0 0 0 c 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 0 0 0 0 0 0 g 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 0 0 0 0 0 0 t 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_6nt_m2_shift1 ; 30 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m2_shift1 (positions_6nt_m2positions_6nt_m2)
; positions_6nt_m2 (positions_6nt_m2positions_6nt_m2); m=0 (reference); ncol1=16; shift=1; ncol=18; -sskgACAGCTGCtgcs- ; Alignment reference a 0 430 401 393 310 1413 4 1799 7 8 26 2 51 326 215 297 297 0 c 0 464 498 361 305 115 1797 1 10 1771 4 2 1507 198 383 612 510 0 g 0 564 651 534 1116 211 1 3 1783 22 6 1798 119 168 987 451 587 0 t 0 348 256 518 75 67 4 3 6 5 1770 4 129 1114 221 446 412 0

MA0832.1_shift2 (Tcf21)
; positions_6nt_m2 versus MA0832.1 (Tcf21); m=1/29; ncol2=14; w=14; offset=1; strand=D; shift=2; score=0.712428; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; positions_6nt_m2 versus MA0499.2_rc (MYOD1_rc); m=2/29; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.70455; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; positions_6nt_m2 versus MA1485.1_rc (FERD3L_rc); m=3/29; ncol2=14; w=14; offset=1; strand=R; shift=2; score=0.689933; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_6nt_m2 versus MA0500.2_rc (MYOG_rc); m=4/29; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.685565; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1641.1_shift3 (MYF5)
; positions_6nt_m2 versus MA1641.1 (MYF5); m=5/29; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.661015; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; positions_6nt_m2 versus MA1619.1 (Ptf1a(var.2)); m=6/29; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.65916; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0521.1_shift4 (Tcf12)
; positions_6nt_m2 versus MA0521.1 (Tcf12); m=7/29; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.646517; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1621.1_rc_shift2 (Rbpjl_rc)
; positions_6nt_m2 versus MA1621.1_rc (Rbpjl_rc); m=8/29; ncol2=14; w=14; offset=1; strand=R; shift=2; score=0.637137; --grsaCAGGTGtkbs-- ; cor=; Ncor= a 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 0 c 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 0 g 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 0 t 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0 0

MA1529.1_rc_shift0 (NHLH2_rc)
; positions_6nt_m2 versus MA1529.1_rc (NHLH2_rc); m=9/29; ncol2=18; w=16; offset=-1; strand=R; shift=0; score=0.63235; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA0745.2_rc_shift2 (SNAI2_rc)
; positions_6nt_m2 versus MA0745.2_rc (SNAI2_rc); m=10/29; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.619684; --rykACAGGTGcrt--- ; cor=; Ncor= a 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 c 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 g 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 t 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0

MA1618.1_shift3 (Ptf1a)
; positions_6nt_m2 versus MA1618.1 (Ptf1a); m=11/29; ncol2=13; w=13; offset=2; strand=D; shift=3; score=0.606059; ---dmaCAGATGttkh-- ; cor=; Ncor= a 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 0 c 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 0 g 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 0 t 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; positions_6nt_m2 versus MA1631.1 (ASCL1(var.2)); m=12/29; ncol2=13; w=13; offset=2; strand=D; shift=3; score=0.598804; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; positions_6nt_m2 versus MA0830.2_rc (TCF4_rc); m=13/29; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.593332; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA0816.1_shift4 (Ascl2)
; positions_6nt_m2 versus MA0816.1 (Ascl2); m=14/29; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.571151; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; positions_6nt_m2 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=15/29; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.563964; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; positions_6nt_m2 versus MA1467.1_rc (ATOH1(var.2)_rc); m=16/29; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.560246; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; positions_6nt_m2 versus MA1100.2_rc (ASCL1_rc); m=17/29; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.558941; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; positions_6nt_m2 versus MA1635.1 (BHLHE22(var.2)); m=18/29; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.558868; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1620.1_shift3 (Ptf1a(var.3))
; positions_6nt_m2 versus MA1620.1 (Ptf1a(var.3)); m=19/29; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.544035; ---rmaCACCTGtky--- ; cor=; Ncor= a 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 c 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 g 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 t 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0

MA0048.2_shift4 (NHLH1)
; positions_6nt_m2 versus MA0048.2 (NHLH1); m=20/29; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.528788; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA0665.1_shift4 (MSC)
; positions_6nt_m2 versus MA0665.1 (MSC); m=21/29; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.528541; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; positions_6nt_m2 versus MA0691.1 (TFAP4); m=22/29; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.522948; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; positions_6nt_m2 versus MA1648.1 (TCF12(var.2)); m=23/29; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.514909; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift4 (TCF3)
; positions_6nt_m2 versus MA0522.3 (TCF3); m=24/29; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.510663; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; positions_6nt_m2 versus MA0667.1_rc (MYF6_rc); m=25/29; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.497037; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0820.1_rc_shift4 (FIGLA_rc)
; positions_6nt_m2 versus MA0820.1_rc (FIGLA_rc); m=26/29; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.469576; ----wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

MA1559.1_shift4 (SNAI3)
; positions_6nt_m2 versus MA1559.1 (SNAI3); m=27/29; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.453906; ----arCAGGTGya---- ; cor=; Ncor= a 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0

MA1558.1_rc_shift4 (SNAI1_rc)
; positions_6nt_m2 versus MA1558.1_rc (SNAI1_rc); m=28/29; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.442804; ----yrCACCTGyh---- ; cor=; Ncor= a 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0

MA0100.3_rc_shift4 (MYB_rc)
; positions_6nt_m2 versus MA0100.3_rc (MYB_rc); m=29/29; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.43911; ----kdCAGTTGvk---- ; cor=; Ncor= a 0 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 0 0 0 c 0 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 0 0 0 g 0 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 0 0 0 t 0 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_7nt_m7_shift0 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m7_shift0 (local_words_7nt_m7local_words_7nt_m7)
; local_words_7nt_m7 (local_words_7nt_m7local_words_7nt_m7); m=0 (reference); ncol1=17; shift=0; ncol=18; crGCAGCAGCTGCCrss- ; Alignment reference a 98 147 68 28 424 16 0 456 1 3 5 4 12 60 205 70 101 0 c 190 97 48 393 14 7 489 3 2 481 4 2 426 334 94 185 144 0 g 116 167 353 49 25 466 2 3 488 5 4 484 17 36 125 136 136 0 t 87 80 22 21 28 2 0 29 0 2 478 1 36 61 67 100 110 0

MA1529.1_shift0 (NHLH2)
; local_words_7nt_m7 versus MA1529.1 (NHLH2); m=1/19; ncol2=18; w=17; offset=0; strand=D; shift=0; score=0.711672; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0500.2_rc_shift3 (MYOG_rc)
; local_words_7nt_m7 versus MA0500.2_rc (MYOG_rc); m=2/19; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.619296; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1485.1_shift2 (FERD3L)
; local_words_7nt_m7 versus MA1485.1 (FERD3L); m=3/19; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.611028; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; local_words_7nt_m7 versus MA1631.1 (ASCL1(var.2)); m=4/19; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.591507; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0830.2_shift3 (TCF4)
; local_words_7nt_m7 versus MA0830.2 (TCF4); m=5/19; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.577176; ---cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA0816.1_shift4 (Ascl2)
; local_words_7nt_m7 versus MA0816.1 (Ascl2); m=6/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.546338; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA0521.1_shift4 (Tcf12)
; local_words_7nt_m7 versus MA0521.1 (Tcf12); m=7/19; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.54383; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA0499.2_shift3 (MYOD1)
; local_words_7nt_m7 versus MA0499.2 (MYOD1); m=8/19; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.541831; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_7nt_m7 versus MA1100.2 (ASCL1); m=9/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.53245; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; local_words_7nt_m7 versus MA1619.1 (Ptf1a(var.2)); m=10/19; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.526119; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; local_words_7nt_m7 versus MA1641.1_rc (MYF5_rc); m=11/19; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.522378; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_7nt_m7 versus MA0048.2_rc (NHLH1_rc); m=12/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.517022; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_7nt_m7 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=13/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.506414; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_7nt_m7 versus MA1472.1 (BHLHA15(var.2)); m=14/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.489722; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; local_words_7nt_m7 versus MA1467.1 (ATOH1(var.2)); m=15/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.477429; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; local_words_7nt_m7 versus MA1648.1_rc (TCF12(var.2)_rc); m=16/19; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.466448; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; local_words_7nt_m7 versus MA0522.3_rc (TCF3_rc); m=17/19; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.458455; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; local_words_7nt_m7 versus MA0691.1 (TFAP4); m=18/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.439716; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; local_words_7nt_m7 versus MA0665.1_rc (MSC_rc); m=19/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.42684; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m16_shift3 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m16_shift3 (oligos_7nt_mkv4_m16oligos_7nt_mkv4_m16)
; oligos_7nt_mkv4_m16 (oligos_7nt_mkv4_m16oligos_7nt_mkv4_m16); m=0 (reference); ncol1=12; shift=3; ncol=15; ---smTGAGCTCAks ; Alignment reference a 0 0 0 27 38 0 3 127 2 5 0 6 124 16 24 c 0 0 0 36 44 4 0 3 11 112 0 121 2 32 43 g 0 0 0 43 32 2 121 0 112 11 3 0 4 44 36 t 0 0 0 24 16 124 6 0 5 2 127 3 0 38 27

MA1632.1_rc_shift3 (ATF2_rc)
; oligos_7nt_mkv4_m16 versus MA1632.1_rc (ATF2_rc); m=1/5; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.70939; ---raTGACvTCATy ; cor=; Ncor= a 0 0 0 18336.0 36321.0 509.0 909.0 57832.0 261.0 18166.0 975.0 2498.0 57651.0 1438.0 11021.0 c 0 0 0 11553.0 5971.0 768.0 649.0 283.0 56882.0 23207.0 262.0 55318.0 328.0 6229.0 18924.0 g 0 0 0 15785.0 14153.0 218.0 53464.0 316.0 886.0 16970.0 396.0 408.0 899.0 3145.0 10292.0 t 0 0 0 13720.0 2949.0 57899.0 4372.0 963.0 1365.0 1051.0 57761.0 1170.0 516.0 48582.0 19157.0

MA0018.4_rc_shift3 (CREB1_rc)
; oligos_7nt_mkv4_m16 versus MA0018.4_rc (CREB1_rc); m=2/5; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.667896; ---drTGACATCAyh ; cor=; Ncor= a 0 0 0 21630.0 32873.0 1485.0 1852.0 68217.0 1831.0 56875.0 2279.0 2963.0 75554.0 10149.0 22306.0 c 0 0 0 13550.0 14802.0 1222.0 2177.0 1207.0 74401.0 6339.0 2012.0 72555.0 1109.0 27796.0 21104.0 g 0 0 0 21876.0 21582.0 1018.0 71982.0 1231.0 1895.0 14144.0 1748.0 2298.0 970.0 13032.0 15046.0 t 0 0 0 22488.0 10287.0 75819.0 3533.0 8889.0 1417.0 2186.0 73505.0 1728.0 1911.0 28567.0 21088.0

MA0492.1_shift0 (JUND(var.2))
; oligos_7nt_mkv4_m16 versus MA0492.1 (JUND(var.2)); m=3/5; ncol2=15; w=12; offset=-3; strand=D; shift=0; score=0.593594; wrwrATGAyGTMATm ; cor=; Ncor= a 11448.0 13436.0 11261.0 13616.0 25347.0 0.0 0.0 33631.0 0.0 5124.0 0.0 8793.0 33631.0 267.0 10255.0 c 4326.0 3228.0 4836.0 2452.0 169.0 0.0 0.0 0.0 10406.0 1824.0 3935.0 24697.0 0.0 5470.0 10841.0 g 7996.0 8721.0 8110.0 15761.0 8115.0 0.0 33511.0 0.0 8287.0 26683.0 0.0 141.0 0.0 2407.0 6351.0 t 9861.0 8246.0 9424.0 1802.0 0.0 33631.0 120.0 0.0 14938.0 0.0 29696.0 0.0 0.0 25487.0 6184.0

MA0693.2_rc_shift5 (VDR_rc)
; oligos_7nt_mkv4_m16 versus MA0693.2_rc (VDR_rc); m=4/5; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.471411; -----TGAACyyr-- ; cor=; Ncor= a 0 0 0 0 0 19.0 174.0 827.0 890.0 32.0 34.0 32.0 455.0 0 0 c 0 0 0 0 0 76.0 28.0 82.0 70.0 919.0 386.0 567.0 43.0 0 0 g 0 0 0 0 0 19.0 743.0 31.0 23.0 25.0 24.0 45.0 280.0 0 0 t 0 0 0 0 0 886.0 55.0 61.0 17.0 24.0 555.0 356.0 222.0 0 0

MA0793.1_rc_shift1 (POU6F2_rc)
; oligos_7nt_mkv4_m16 versus MA0793.1_rc (POU6F2_rc); m=5/5; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.407038; -wTAATkAGst---- ; cor=; Ncor= a 0 1278.0 53.0 3297.0 3297.0 21.0 81.0 3297.0 257.0 266.0 546.0 0 0 0 0 c 0 205.0 22.0 41.0 0.0 0.0 50.0 114.0 219.0 2116.0 582.0 0 0 0 0 g 0 546.0 27.0 12.0 4.0 75.0 2105.0 64.0 3297.0 1181.0 321.0 0 0 0 0 t 0 1268.0 3297.0 0.0 0.0 3297.0 1192.0 75.0 239.0 714.0 1848.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_7nt_m10_shift0 ; 24 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m10_shift0 (local_words_7nt_m10local_words_7nt_m10)
; local_words_7nt_m10 (local_words_7nt_m10local_words_7nt_m10); m=0 (reference); ncol1=15; shift=0; ncol=18; crGCAGCAGCTGmss--- ; Alignment reference a 143 218 82 39 638 17 0 646 3 1 2 2 238 124 153 0 0 0 c 243 115 45 539 9 8 672 0 1 664 1 4 194 205 172 0 0 0 g 164 214 513 61 18 647 1 3 666 8 4 667 92 202 246 0 0 0 t 123 126 33 34 8 1 0 24 3 0 666 0 149 142 102 0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; local_words_7nt_m10 versus MA0500.2_rc (MYOG_rc); m=1/23; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.709363; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1485.1_shift2 (FERD3L)
; local_words_7nt_m10 versus MA1485.1 (FERD3L); m=2/23; ncol2=14; w=13; offset=2; strand=D; shift=2; score=0.651135; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA1529.1_shift0 (NHLH2)
; local_words_7nt_m10 versus MA1529.1 (NHLH2); m=3/23; ncol2=18; w=15; offset=0; strand=D; shift=0; score=0.639037; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0521.1_shift4 (Tcf12)
; local_words_7nt_m10 versus MA0521.1 (Tcf12); m=4/23; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.637268; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; local_words_7nt_m10 versus MA1619.1 (Ptf1a(var.2)); m=5/23; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.635808; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; local_words_7nt_m10 versus MA1631.1_rc (ASCL1(var.2)_rc); m=6/23; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.635043; --gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; local_words_7nt_m10 versus MA1641.1_rc (MYF5_rc); m=7/23; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.62819; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA0816.1_shift4 (Ascl2)
; local_words_7nt_m10 versus MA0816.1 (Ascl2); m=8/23; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.611837; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA0832.1_shift2 (Tcf21)
; local_words_7nt_m10 versus MA0832.1 (Tcf21); m=9/23; ncol2=14; w=13; offset=2; strand=D; shift=2; score=0.606047; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_7nt_m10 versus MA0048.2_rc (NHLH1_rc); m=10/23; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.589714; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_7nt_m10 versus MA1100.2 (ASCL1); m=11/23; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.589598; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_7nt_m10 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=12/23; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.586693; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_7nt_m10 versus MA1472.1 (BHLHA15(var.2)); m=13/23; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.576129; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; local_words_7nt_m10 versus MA0691.1 (TFAP4); m=14/23; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.559814; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0499.2_shift3 (MYOD1)
; local_words_7nt_m10 versus MA0499.2 (MYOD1); m=15/23; ncol2=13; w=12; offset=3; strand=D; shift=3; score=0.550087; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; local_words_7nt_m10 versus MA1648.1_rc (TCF12(var.2)_rc); m=16/23; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.547821; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; local_words_7nt_m10 versus MA1467.1 (ATOH1(var.2)); m=17/23; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.545869; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; local_words_7nt_m10 versus MA0522.3_rc (TCF3_rc); m=18/23; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.537616; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA0830.2_shift3 (TCF4)
; local_words_7nt_m10 versus MA0830.2 (TCF4); m=19/23; ncol2=13; w=12; offset=3; strand=D; shift=3; score=0.536061; ---cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; local_words_7nt_m10 versus MA0665.1_rc (MSC_rc); m=20/23; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.529465; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA0667.1_shift4 (MYF6)
; local_words_7nt_m10 versus MA0667.1 (MYF6); m=21/23; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.480419; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; local_words_7nt_m10 versus MA0820.1 (FIGLA); m=22/23; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.478029; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

MA1558.1_shift4 (SNAI1)
; local_words_7nt_m10 versus MA1558.1 (SNAI1); m=23/23; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.468734; ----drCAGGTGyr---- ; cor=; Ncor= a 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 0 c 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 0 g 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 0 t 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m15_shift3 ; 31 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m15_shift3 (local_words_8nt_m15local_words_8nt_m15)
; local_words_8nt_m15 (local_words_8nt_m15local_words_8nt_m15); m=0 (reference); ncol1=16; shift=3; ncol=19; ---sggTGACAGCTGgcms ; Alignment reference a 0 0 0 88 99 59 43 4 389 1 406 4 6 0 0 30 36 118 68 c 0 0 0 127 88 92 25 7 8 410 5 3 386 2 0 79 270 113 125 g 0 0 0 123 151 225 57 401 12 2 0 402 19 1 412 247 67 85 134 t 0 0 0 75 75 37 288 1 4 0 2 4 2 410 1 57 40 97 86

MA1485.1_rc_shift5 (FERD3L_rc)
; local_words_8nt_m15 versus MA1485.1_rc (FERD3L_rc); m=1/30; ncol2=14; w=14; offset=2; strand=R; shift=5; score=0.707687; -----GTrACAGCTGkyrC ; cor=; Ncor= a 0 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 0 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0

MA0499.2_rc_shift5 (MYOD1_rc)
; local_words_8nt_m15 versus MA0499.2_rc (MYOD1_rc); m=2/30; ncol2=13; w=13; offset=2; strand=R; shift=5; score=0.657655; -----rkrACAGGTGcwg- ; cor=; Ncor= a 0 0 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 0 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 0 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 0 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0

MA0796.1_shift6 (TGIF1)
; local_words_8nt_m15 versus MA0796.1 (TGIF1); m=3/30; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.648163; ------TGACAGCTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 c 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 g 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 t 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0

MA1571.1_rc_shift6 (TGIF2LX_rc)
; local_words_8nt_m15 versus MA1571.1_rc (TGIF2LX_rc); m=4/30; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.64471; ------TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0

MA0797.1_shift6 (TGIF2)
; local_words_8nt_m15 versus MA0797.1 (TGIF2); m=5/30; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.639731; ------TGACAGsTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0

MA1572.1_rc_shift6 (TGIF2LY_rc)
; local_words_8nt_m15 versus MA1572.1_rc (TGIF2LY_rc); m=6/30; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.637161; ------TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0

MA1641.1_shift6 (MYF5)
; local_words_8nt_m15 versus MA1641.1 (MYF5); m=7/30; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.635395; ------gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0

MA0832.1_shift5 (Tcf21)
; local_words_8nt_m15 versus MA0832.1 (Tcf21); m=8/30; ncol2=14; w=14; offset=2; strand=D; shift=5; score=0.629365; -----ryAACAGCTGTTry ; cor=; Ncor= a 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0

MA1619.1_shift6 (Ptf1a(var.2))
; local_words_8nt_m15 versus MA1619.1 (Ptf1a(var.2)); m=9/30; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.625962; ------rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA1109.1_shift6 (NEUROD1)
; local_words_8nt_m15 versus MA1109.1 (NEUROD1); m=10/30; ncol2=13; w=13; offset=3; strand=D; shift=6; score=0.620312; ------graCAGATGGyrs ; cor=; Ncor= a 0 0 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 c 0 0 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 g 0 0 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 t 0 0 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0

MA1621.1_rc_shift5 (Rbpjl_rc)
; local_words_8nt_m15 versus MA1621.1_rc (Rbpjl_rc); m=11/30; ncol2=14; w=14; offset=2; strand=R; shift=5; score=0.617452; -----grsaCAGGTGtkbs ; cor=; Ncor= a 0 0 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 c 0 0 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 g 0 0 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 t 0 0 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0

MA0521.1_shift7 (Tcf12)
; local_words_8nt_m15 versus MA0521.1 (Tcf12); m=12/30; ncol2=11; w=11; offset=4; strand=D; shift=7; score=0.61345; -------rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA0783.1_shift6 (PKNOX2)
; local_words_8nt_m15 versus MA0783.1 (PKNOX2); m=13/30; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.609978; ------TGACAGsTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 0 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 0 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0

MA0500.2_rc_shift6 (MYOG_rc)
; local_words_8nt_m15 versus MA0500.2_rc (MYOG_rc); m=14/30; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.600647; ------sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA1123.2_rc_shift6 (TWIST1_rc)
; local_words_8nt_m15 versus MA1123.2_rc (TWIST1_rc); m=15/30; ncol2=13; w=13; offset=3; strand=R; shift=6; score=0.591478; ------avaCATCTGGwwt ; cor=; Ncor= a 0 0 0 0 0 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 c 0 0 0 0 0 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 g 0 0 0 0 0 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 t 0 0 0 0 0 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0

MA0745.2_rc_shift5 (SNAI2_rc)
; local_words_8nt_m15 versus MA0745.2_rc (SNAI2_rc); m=16/30; ncol2=13; w=13; offset=2; strand=R; shift=5; score=0.586165; -----rykACAGGTGcrt- ; cor=; Ncor= a 0 0 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 0 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 0 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 0 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0

MA1642.1_shift5 (NEUROG2(var.2))
; local_words_8nt_m15 versus MA1642.1 (NEUROG2(var.2)); m=17/30; ncol2=13; w=13; offset=2; strand=D; shift=5; score=0.583356; -----rrraCAGATGGyv- ; cor=; Ncor= a 0 0 0 0 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 9464.0 0 c 0 0 0 0 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 9034.0 0 g 0 0 0 0 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 8709.0 0 t 0 0 0 0 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0 7184.0 0

MA1467.1_rc_shift7 (ATOH1(var.2)_rc)
; local_words_8nt_m15 versus MA1467.1_rc (ATOH1(var.2)_rc); m=18/30; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.545847; -------RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0

MA1620.1_rc_shift6 (Ptf1a(var.3)_rc)
; local_words_8nt_m15 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=19/30; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.531873; ------rmaCAGGTGtky- ; cor=; Ncor= a 0 0 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 c 0 0 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 g 0 0 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 t 0 0 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0

MA1472.1_rc_shift7 (BHLHA15(var.2)_rc)
; local_words_8nt_m15 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=20/30; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.529788; -------rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0

MA1635.1_shift7 (BHLHE22(var.2))
; local_words_8nt_m15 versus MA1635.1 (BHLHE22(var.2)); m=21/30; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.523227; -------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA1100.2_shift7 (ASCL1)
; local_words_8nt_m15 versus MA1100.2 (ASCL1); m=22/30; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.505982; -------rrCAGCTGcy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA0816.1_rc_shift7 (Ascl2_rc)
; local_words_8nt_m15 versus MA0816.1_rc (Ascl2_rc); m=23/30; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.480925; -------rrCAGCTGyt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 c 0 0 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 g 0 0 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 t 0 0 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0

MA0665.1_shift7 (MSC)
; local_words_8nt_m15 versus MA0665.1 (MSC); m=24/30; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.472363; -------AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 0 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 0 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0

MA0691.1_shift7 (TFAP4)
; local_words_8nt_m15 versus MA0691.1 (TFAP4); m=25/30; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.469984; -------AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA0667.1_rc_shift7 (MYF6_rc)
; local_words_8nt_m15 versus MA0667.1_rc (MYF6_rc); m=26/30; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.455791; -------RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0

MA0782.2_shift0 (PKNOX1)
; local_words_8nt_m15 versus MA0782.2 (PKNOX1); m=27/30; ncol2=15; w=12; offset=-3; strand=D; shift=0; score=0.452356; twTGAgTGACAGctr---- ; cor=; Ncor= a 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 0 0 0 c 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 0 0 0 g 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 0 0 0 t 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0 0 0 0

MA0820.1_rc_shift7 (FIGLA_rc)
; local_words_8nt_m15 versus MA0820.1_rc (FIGLA_rc); m=28/30; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.449498; -------wmCAGGTGkw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0

MA0774.1_shift5 (MEIS2)
; local_words_8nt_m15 versus MA0774.1 (MEIS2); m=29/30; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.44778; -----tTGACAGs------ ; cor=; Ncor= a 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 c 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 g 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 t 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0

MA0775.1_shift5 (MEIS3)
; local_words_8nt_m15 versus MA0775.1 (MEIS3); m=30/30; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.43383; -----wTGACAgs------ ; cor=; Ncor= a 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 c 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 g 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 t 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m36_shift3 ; 19 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m36_shift3 (oligos_6nt_mkv3_m36oligos_6nt_mkv3_m36)
; oligos_6nt_mkv3_m36 (oligos_6nt_mkv3_m36oligos_6nt_mkv3_m36); m=0 (reference); ncol1=12; shift=3; ncol=15; ---msGTGGCTCAss ; Alignment reference a 0 0 0 48 30 11 1 3 20 3 1 8 151 18 47 c 0 0 0 57 65 4 2 1 1 181 3 177 15 72 59 g 0 0 0 46 51 170 3 185 167 4 11 1 15 60 53 t 0 0 0 38 43 4 183 0 1 1 174 3 8 39 30

MA1134.1_rc_shift3 (FOS::JUNB_rc)
; oligos_6nt_mkv3_m36 versus MA1134.1_rc (FOS::JUNB_rc); m=1/18; ncol2=12; w=12; offset=0; strand=R; shift=3; score=0.705729; ---bkrTGAsTCAym ; cor=; Ncor= a 0 0 0 156.0 184.0 658.0 1.0 1.0 996.0 25.0 4.0 131.0 998.0 36.0 286.0 c 0 0 0 256.0 178.0 51.0 1.0 1.0 3.0 618.0 1.0 868.0 1.0 267.0 372.0 g 0 0 0 304.0 363.0 284.0 1.0 971.0 1.0 309.0 30.0 1.0 1.0 105.0 168.0 t 0 0 0 283.0 275.0 7.0 998.0 27.0 1.0 48.0 965.0 1.0 1.0 593.0 174.0

MA0478.1_shift3 (FOSL2)
; oligos_6nt_mkv3_m36 versus MA0478.1 (FOSL2); m=2/18; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.693503; ---krrTGAsTCAb- ; cor=; Ncor= a 0 0 0 833.0 1525.0 2861.0 0.0 0.0 5075.0 0.0 0.0 205.0 5318.0 0.0 0 c 0 0 0 994.0 592.0 55.0 0.0 0.0 51.0 3286.0 0.0 5113.0 0.0 1399.0 0 g 0 0 0 2086.0 2707.0 2328.0 0.0 5318.0 192.0 1838.0 0.0 0.0 0.0 1933.0 0 t 0 0 0 1405.0 494.0 74.0 5318.0 0.0 0.0 194.0 5318.0 0.0 0.0 1986.0 0

MA1141.1_rc_shift3 (FOS::JUND_rc)
; oligos_6nt_mkv3_m36 versus MA1141.1_rc (FOS::JUND_rc); m=3/18; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.678235; ---bkrTGACTCAym ; cor=; Ncor= a 0 0 0 180.0 185.0 612.0 0.0 0.0 999.0 19.0 15.0 129.0 999.0 38.0 263.0 c 0 0 0 292.0 195.0 77.0 0.0 0.0 0.0 867.0 0.0 871.0 0.0 266.0 389.0 g 0 0 0 264.0 370.0 290.0 0.0 970.0 0.0 40.0 91.0 0.0 1.0 104.0 167.0 t 0 0 0 264.0 250.0 21.0 999.0 29.0 0.0 75.0 894.0 0.0 0.0 593.0 182.0

MA1128.1_shift3 (FOSL1::JUN)
; oligos_6nt_mkv3_m36 versus MA1128.1 (FOSL1::JUN); m=4/18; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.667419; ---kkrTGACTCAtm ; cor=; Ncor= a 0 0 0 208.0 172.0 602.0 1.0 3.0 994.0 26.0 33.0 159.0 984.0 57.0 296.0 c 0 0 0 246.0 159.0 89.0 2.0 2.0 2.0 826.0 2.0 835.0 4.0 245.0 308.0 g 0 0 0 253.0 380.0 283.0 1.0 957.0 2.0 51.0 140.0 2.0 9.0 119.0 173.0 t 0 0 0 293.0 289.0 26.0 996.0 38.0 3.0 97.0 826.0 4.0 4.0 579.0 223.0

MA0477.2_shift3 (FOSL1)
; oligos_6nt_mkv3_m36 versus MA0477.2 (FOSL1); m=5/18; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.661209; ---draTGACTCAth ; cor=; Ncor= a 0 0 0 14979.0 15921.0 35056.0 260.0 515.0 56806.0 2557.0 1060.0 3133.0 56408.0 2716.0 14671.0 c 0 0 0 12491.0 11018.0 6703.0 460.0 301.0 287.0 43918.0 163.0 53711.0 344.0 10399.0 15640.0 g 0 0 0 14848.0 16855.0 13127.0 183.0 54619.0 286.0 8615.0 598.0 278.0 566.0 6533.0 12314.0 t 0 0 0 15363.0 13887.0 2795.0 56778.0 2246.0 302.0 2591.0 55860.0 559.0 363.0 38033.0 15056.0

MA0462.2_shift4 (BATF::JUN)
; oligos_6nt_mkv3_m36 versus MA0462.2 (BATF::JUN); m=6/18; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.656496; ----waTGACTCAth ; cor=; Ncor= a 0 0 0 0 10765.0 18789.0 367.0 834.0 37280.0 1399.0 755.0 3955.0 36854.0 6299.0 13407.0 c 0 0 0 0 4762.0 7260.0 275.0 400.0 204.0 31168.0 241.0 32770.0 318.0 6105.0 9668.0 g 0 0 0 0 9317.0 6729.0 182.0 33135.0 350.0 4188.0 539.0 522.0 424.0 7745.0 4923.0 t 0 0 0 0 13310.0 5376.0 37330.0 3785.0 320.0 1399.0 36619.0 907.0 558.0 18005.0 10156.0

MA1634.1_shift4 (BATF)
; oligos_6nt_mkv3_m36 versus MA1634.1 (BATF); m=7/18; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.655509; ----waTGACTCAth ; cor=; Ncor= a 0 0 0 0 13555.0 22575.0 483.0 1139.0 45946.0 2051.0 1130.0 4742.0 45316.0 8146.0 16139.0 c 0 0 0 0 5742.0 8931.0 355.0 570.0 250.0 37333.0 306.0 40279.0 431.0 7566.0 12048.0 g 0 0 0 0 11492.0 8627.0 283.0 40617.0 341.0 5573.0 836.0 711.0 507.0 9681.0 5919.0 t 0 0 0 0 16219.0 6875.0 45887.0 4682.0 471.0 2051.0 44736.0 1276.0 754.0 21615.0 12902.0

MA0835.2_shift4 (BATF3)
; oligos_6nt_mkv3_m36 versus MA0835.2 (BATF3); m=8/18; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.651006; ----waTGACTCAtw ; cor=; Ncor= a 0 0 0 0 3609.0 6137.0 132.0 245.0 11670.0 408.0 267.0 1248.0 11529.0 2334.0 4521.0 c 0 0 0 0 1245.0 2106.0 59.0 62.0 92.0 10589.0 79.0 10347.0 84.0 1664.0 2733.0 g 0 0 0 0 2608.0 1831.0 37.0 10420.0 87.0 560.0 117.0 88.0 117.0 2249.0 1255.0 t 0 0 0 0 4503.0 1891.0 11737.0 1238.0 116.0 408.0 11502.0 282.0 235.0 5718.0 3456.0

MA1622.1_shift2 (Smad2::Smad3)
; oligos_6nt_mkv3_m36 versus MA1622.1 (Smad2::Smad3); m=9/18; ncol2=14; w=12; offset=-1; strand=D; shift=2; score=0.632796; --rtkrTGACTCAtw ; cor=; Ncor= a 0 0 2995.0 2508.0 2499.0 4451.0 79.0 90.0 10141.0 627.0 247.0 711.0 10056.0 683.0 2948.0 c 0 0 2254.0 2515.0 1642.0 2212.0 59.0 82.0 44.0 7480.0 53.0 9443.0 85.0 2047.0 2479.0 g 0 0 2615.0 2324.0 3479.0 2888.0 56.0 9768.0 58.0 1542.0 68.0 90.0 79.0 1979.0 2154.0 t 0 0 2481.0 2998.0 2725.0 794.0 10151.0 405.0 102.0 696.0 9977.0 101.0 125.0 5636.0 2764.0

MA1130.1_rc_shift4 (FOSL2::JUN_rc)
; oligos_6nt_mkv3_m36 versus MA1130.1_rc (FOSL2::JUN_rc); m=10/18; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.611688; ----krTGACTCAym ; cor=; Ncor= a 0 0 0 0 209.0 589.0 1.0 1.0 998.0 58.0 29.0 158.0 998.0 55.0 269.0 c 0 0 0 0 180.0 93.0 1.0 1.0 1.0 698.0 1.0 840.0 1.0 282.0 338.0 g 0 0 0 0 341.0 299.0 0.0 979.0 1.0 141.0 123.0 1.0 1.0 121.0 179.0 t 0 0 0 0 269.0 19.0 998.0 20.0 1.0 103.0 847.0 1.0 1.0 542.0 214.0

MA0099.3_rc_shift4 (FOS::JUN_rc)
; oligos_6nt_mkv3_m36 versus MA0099.3_rc (FOS::JUN_rc); m=11/18; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.598167; ----krTGACTCAy- ; cor=; Ncor= a 0 0 0 0 162.0 568.0 4.0 4.0 991.0 54.0 45.0 168.0 990.0 40.0 0 c 0 0 0 0 164.0 95.0 2.0 3.0 2.0 688.0 4.0 824.0 2.0 257.0 0 g 0 0 0 0 397.0 313.0 2.0 963.0 2.0 180.0 131.0 1.0 5.0 111.0 0 t 0 0 0 0 277.0 24.0 992.0 30.0 5.0 78.0 820.0 7.0 3.0 592.0 0

MA1135.1_shift4 (FOSB::JUNB)
; oligos_6nt_mkv3_m36 versus MA1135.1 (FOSB::JUNB); m=12/18; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.592754; ----krTGAsTCAy- ; cor=; Ncor= a 0 0 0 0 119.0 598.0 1.0 1.0 997.0 34.0 2.0 191.0 998.0 37.0 0 c 0 0 0 0 182.0 61.0 0.0 0.0 1.0 596.0 1.0 808.0 0.0 259.0 0 g 0 0 0 0 429.0 321.0 1.0 980.0 1.0 309.0 39.0 1.0 1.0 126.0 0 t 0 0 0 0 270.0 20.0 998.0 19.0 1.0 61.0 958.0 1.0 1.0 578.0 0

MA1144.1_shift4 (FOSL2::JUND)
; oligos_6nt_mkv3_m36 versus MA1144.1 (FOSL2::JUND); m=13/18; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.589259; ----krTGAsTCAy- ; cor=; Ncor= a 0 0 0 0 137.0 634.0 0.0 0.0 998.0 46.0 6.0 140.0 999.0 38.0 0 c 0 0 0 0 143.0 60.0 0.0 0.0 1.0 604.0 0.0 860.0 0.0 266.0 0 g 0 0 0 0 446.0 291.0 0.0 990.0 0.0 292.0 60.0 0.0 0.0 113.0 0 t 0 0 0 0 275.0 14.0 999.0 10.0 0.0 58.0 934.0 0.0 0.0 583.0 0

MA1138.1_shift4 (FOSL2::JUNB)
; oligos_6nt_mkv3_m36 versus MA1138.1 (FOSL2::JUNB); m=14/18; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.58848; ----krTGAsTCAy- ; cor=; Ncor= a 0 0 0 0 151.0 621.0 0.0 0.0 999.0 54.0 1.0 168.0 999.0 35.0 0 c 0 0 0 0 164.0 53.0 0.0 0.0 0.0 568.0 0.0 831.0 0.0 251.0 0 g 0 0 0 0 407.0 314.0 0.0 985.0 0.0 292.0 26.0 0.0 0.0 112.0 0 t 0 0 0 0 277.0 13.0 999.0 14.0 0.0 85.0 973.0 0.0 0.0 602.0 0

MA1633.1_shift4 (BACH1)
; oligos_6nt_mkv3_m36 versus MA1633.1 (BACH1); m=15/18; ncol2=13; w=11; offset=1; strand=D; shift=4; score=0.554905; ----saTGACTCAGC ; cor=; Ncor= a 0 0 0 0 3257.0 6929.0 105.0 97.0 15046.0 443.0 650.0 576.0 14778.0 339.0 769.0 c 0 0 0 0 3946.0 3833.0 267.0 149.0 230.0 12597.0 220.0 14563.0 194.0 623.0 13382.0 g 0 0 0 0 4835.0 3848.0 149.0 14831.0 167.0 2083.0 266.0 178.0 310.0 13050.0 858.0 t 0 0 0 0 3519.0 947.0 15036.0 480.0 114.0 434.0 14421.0 240.0 275.0 1545.0 548.0

MA0489.1_shift0 (JUN(var.2))
; oligos_6nt_mkv3_m36 versus MA0489.1 (JUN(var.2)); m=16/18; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.52178; rrrrrrTGAsTCAt- ; cor=; Ncor= a 4852.0 3927.0 3726.0 4396.0 4146.0 5930.0 0.0 0.0 10953.0 382.0 199.0 956.0 10956.0 376.0 0 c 1250.0 1324.0 1127.0 1122.0 593.0 993.0 0.0 0.0 0.0 5704.0 0.0 10000.0 0.0 2509.0 0 g 2818.0 4110.0 4330.0 3461.0 4213.0 4033.0 0.0 10956.0 0.0 4090.0 0.0 0.0 0.0 2645.0 0 t 2036.0 1595.0 1773.0 1977.0 2004.0 0.0 10956.0 0.0 3.0 780.0 10757.0 0.0 0.0 5426.0 0

MA0719.1_rc_shift6 (RHOXF1_rc)
; oligos_6nt_mkv3_m36 versus MA0719.1_rc (RHOXF1_rc); m=17/18; ncol2=8; w=8; offset=3; strand=R; shift=6; score=0.47957; ------kGGmTyAw- ; cor=; Ncor= a 0 0 0 0 0 0 2123.0 2275.0 0.0 7376.0 0.0 1367.0 10916.0 3193.0 0 c 0 0 0 0 0 0 2117.0 0.0 0.0 3540.0 0.0 5373.0 478.0 1855.0 0 g 0 0 0 0 0 0 3453.0 10916.0 10916.0 0.0 0.0 0.0 0.0 2644.0 0 t 0 0 0 0 0 0 3223.0 0.0 0.0 0.0 10916.0 5543.0 2837.0 3224.0 0

MA1581.1_rc_shift5 (ZBTB6_rc)
; oligos_6nt_mkv3_m36 versus MA1581.1_rc (ZBTB6_rc); m=18/18; ncol2=13; w=10; offset=2; strand=R; shift=5; score=0.469509; -----skGGCTCAAG ; cor=; Ncor= a 0 0 0 0 0 344.0 464.0 223.0 46.0 14.0 21.0 7.0 1566.0 2042.0 28.0 c 0 0 0 0 0 749.0 467.0 88.0 38.0 2135.0 20.0 2148.0 409.0 52.0 25.0 g 0 0 0 0 0 593.0 707.0 1814.0 2087.0 20.0 28.0 59.0 45.0 104.0 2080.0 t 0 0 0 0 0 541.0 589.0 102.0 56.0 58.0 2158.0 13.0 207.0 29.0 94.0

One-to-n matrix alignment; reference matrix: positions_7nt_m5_shift0 ; 30 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m5_shift0 (positions_7nt_m5positions_7nt_m5)
; positions_7nt_m5 (positions_7nt_m5positions_7nt_m5); m=0 (reference); ncol1=16; shift=0; ncol=18; svgcaGCAGCTGTsss-- ; Alignment reference a 350 444 405 204 1041 55 2 1676 9 5 2 9 98 118 371 265 0 0 c 539 482 376 936 117 25 1699 1 15 1665 6 2 151 494 514 633 0 0 g 490 480 667 343 238 1611 3 6 1679 27 2 1693 134 733 496 445 0 0 t 329 302 260 225 312 17 4 25 5 11 1698 4 1325 363 327 365 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; positions_7nt_m5 versus MA0832.1_rc (Tcf21_rc); m=1/29; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.705341; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA0499.2_shift3 (MYOD1)
; positions_7nt_m5 versus MA0499.2 (MYOD1); m=2/29; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.68564; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA1485.1_shift2 (FERD3L)
; positions_7nt_m5 versus MA1485.1 (FERD3L); m=3/29; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.683953; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_7nt_m5 versus MA0500.2_rc (MYOG_rc); m=4/29; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.683854; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1529.1_shift0 (NHLH2)
; positions_7nt_m5 versus MA1529.1 (NHLH2); m=5/29; ncol2=18; w=16; offset=0; strand=D; shift=0; score=0.673279; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; positions_7nt_m5 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=6/29; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.657527; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; positions_7nt_m5 versus MA1641.1_rc (MYF5_rc); m=7/29; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.653929; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; positions_7nt_m5 versus MA0521.1_rc (Tcf12_rc); m=8/29; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.634487; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1621.1_shift2 (Rbpjl)
; positions_7nt_m5 versus MA1621.1 (Rbpjl); m=9/29; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.622551; --svmaCACCTGtsyc-- ; cor=; Ncor= a 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 c 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 g 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 t 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; positions_7nt_m5 versus MA1631.1_rc (ASCL1(var.2)_rc); m=10/29; ncol2=13; w=13; offset=2; strand=R; shift=2; score= 0.6134; --gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0

MA0745.2_shift3 (SNAI2)
; positions_7nt_m5 versus MA0745.2 (SNAI2); m=11/29; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.60837; ---aygCACCTGTmry-- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0

MA1618.1_rc_shift2 (Ptf1a_rc)
; positions_7nt_m5 versus MA1618.1_rc (Ptf1a_rc); m=12/29; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.596935; --dmaaCATCTGtkh--- ; cor=; Ncor= a 0 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 c 0 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 g 0 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 t 0 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0

MA0830.2_shift3 (TCF4)
; positions_7nt_m5 versus MA0830.2 (TCF4); m=13/29; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.582559; ---cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; positions_7nt_m5 versus MA0816.1_rc (Ascl2_rc); m=14/29; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.573675; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; positions_7nt_m5 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=15/29; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.559346; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; positions_7nt_m5 versus MA1472.1 (BHLHA15(var.2)); m=16/29; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.557981; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA1100.2_shift4 (ASCL1)
; positions_7nt_m5 versus MA1100.2 (ASCL1); m=17/29; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.555829; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; positions_7nt_m5 versus MA0048.2_rc (NHLH1_rc); m=18/29; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.551374; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1620.1_rc_shift3 (Ptf1a(var.3)_rc)
; positions_7nt_m5 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=19/29; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.545084; ---rmaCAGGTGtky--- ; cor=; Ncor= a 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 0 c 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 0 g 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 0 t 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; positions_7nt_m5 versus MA1467.1 (ATOH1(var.2)); m=20/29; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.529554; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; positions_7nt_m5 versus MA1648.1_rc (TCF12(var.2)_rc); m=21/29; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.529107; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; positions_7nt_m5 versus MA0522.3_rc (TCF3_rc); m=22/29; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.525329; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; positions_7nt_m5 versus MA0691.1_rc (TFAP4_rc); m=23/29; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.521991; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; positions_7nt_m5 versus MA0665.1_rc (MSC_rc); m=24/29; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.51974; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA0103.3_rc_shift3 (ZEB1_rc)
; positions_7nt_m5 versus MA0103.3_rc (ZEB1_rc); m=25/29; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.48611; ---sssCAGGTGss---- ; cor=; Ncor= a 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 0 0 0 c 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 0 0 0 g 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 0 0 0 t 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0 0 0 0

MA0667.1_shift4 (MYF6)
; positions_7nt_m5 versus MA0667.1 (MYF6); m=26/29; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.484335; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; positions_7nt_m5 versus MA0820.1 (FIGLA); m=27/29; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.464488; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

MA1558.1_shift4 (SNAI1)
; positions_7nt_m5 versus MA1558.1 (SNAI1); m=28/29; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.454755; ----drCAGGTGyr---- ; cor=; Ncor= a 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 0 c 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 0 g 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 0 t 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0 0

MA1559.1_rc_shift4 (SNAI3_rc)
; positions_7nt_m5 versus MA1559.1_rc (SNAI3_rc); m=29/29; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.450455; ----trCACCTGyt---- ; cor=; Ncor= a 0 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 c 0 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 g 0 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 t 0 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m18_shift1 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m18_shift1 (dyads_m18dyads_m18)
; dyads_m18 (dyads_m18dyads_m18); m=0 (reference); ncol1=16; shift=1; ncol=17; -ccCGCCCCGCCCCycc ; Alignment reference a 0 10 23 7 5 0 0 1 2 5 0 1 2 6 14 14 10 c 0 79 70 112 2 136 138 138 139 10 141 135 135 127 50 66 75 g 0 35 33 19 124 5 5 3 4 119 4 8 5 7 30 36 34 t 0 22 20 8 15 5 3 4 1 12 1 2 4 6 52 30 27

MA0516.2_shift0 (SP2)
; dyads_m18 versus MA0516.2 (SP2); m=1/20; ncol2=17; w=16; offset=-1; strand=D; shift=0; score=0.705148; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0

MA0685.1_shift1 (SP4)
; dyads_m18 versus MA0685.1 (SP4); m=2/20; ncol2=17; w=16; offset=0; strand=D; shift=1; score=0.703558; -ywrGCCACGCCCmCty ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0

MA0079.4_shift1 (SP1)
; dyads_m18 versus MA0079.4 (SP1); m=3/20; ncol2=15; w=15; offset=0; strand=D; shift=1; score=0.700361; -ywrRCCACGCCCmCh- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0

MA0746.2_shift3 (SP3)
; dyads_m18 versus MA0746.2 (SP3); m=4/20; ncol2=13; w=13; offset=2; strand=D; shift=3; score=0.659028; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0

MA1513.1_shift4 (KLF15)
; dyads_m18 versus MA1513.1 (KLF15); m=5/20; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.651071; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0

MA0740.1_shift3 (KLF14)
; dyads_m18 versus MA0740.1 (KLF14); m=6/20; ncol2=14; w=14; offset=2; strand=D; shift=3; score=0.635796; ---krcCACGCCCmYyt ; cor=; Ncor= a 0 0 0 430.0 1205.0 526.0 0.0 1708.0 2.0 69.0 0.0 0.0 0.0 716.0 32.0 280.0 649.0 c 0 0 0 215.0 73.0 1360.0 1599.0 136.0 1596.0 36.0 1602.0 1604.0 1609.0 961.0 1463.0 594.0 741.0 g 0 0 0 966.0 2280.0 96.0 10.0 58.0 0.0 2939.0 3.0 3.0 4.0 1.0 15.0 89.0 314.0 t 0 0 0 693.0 71.0 404.0 248.0 5.0 2.0 31.0 0.0 6.0 65.0 31.0 559.0 1041.0 1670.0

MA1564.1_shift4 (SP9)
; dyads_m18 versus MA1564.1 (SP9); m=7/20; ncol2=12; w=12; offset=3; strand=D; shift=4; score=0.621864; ----rcCmCGCCCmcy- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0

MA1653.1_shift3 (ZNF148)
; dyads_m18 versus MA1653.1 (ZNF148); m=8/20; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.618233; ---ysCCCCTCCCcc-- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0

MA0753.2_shift2 (ZNF740)
; dyads_m18 versus MA0753.2 (ZNF740); m=9/20; ncol2=13; w=13; offset=1; strand=D; shift=2; score=0.612724; --cyrCCCCCCCCAc-- ; cor=; Ncor= a 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 0 c 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 0 g 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 0 t 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0 0

MA0039.4_shift3 (KLF4)
; dyads_m18 versus MA0039.4 (KLF4); m=10/20; ncol2=12; w=12; offset=2; strand=D; shift=3; score= 0.6025; ---ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0

MA0747.1_shift4 (SP8)
; dyads_m18 versus MA0747.1 (SP8); m=11/20; ncol2=12; w=12; offset=3; strand=D; shift=4; score=0.581353; ----rmCACgCCCmCy- ; cor=; Ncor= a 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 c 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 g 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 t 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0

MA0741.1_shift4 (KLF16)
; dyads_m18 versus MA0741.1 (KLF16); m=12/20; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.578971; ----gmCMCgCCCMC-- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0

MA0599.1_shift4 (KLF5)
; dyads_m18 versus MA0599.1 (KLF5); m=13/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.572181; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA1515.1_shift3 (KLF2)
; dyads_m18 versus MA1515.1 (KLF2); m=14/20; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.547366; ---srCCmCrCCCw--- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0

MA1522.1_shift3 (MAZ)
; dyads_m18 versus MA1522.1 (MAZ); m=15/20; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.541736; ---ssCCCCTCCcc--- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0

MA1512.1_shift4 (KLF11)
; dyads_m18 versus MA1512.1 (KLF11); m=16/20; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.528302; ----gcCACGCCCmC-- ; cor=; Ncor= a 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 c 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 g 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 t 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0

MA1511.1_shift4 (KLF10)
; dyads_m18 versus MA1511.1 (KLF10); m=17/20; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.512578; ----gmCACrCCCmy-- ; cor=; Ncor= a 0 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 c 0 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 g 0 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 t 0 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0

MA1517.1_shift3 (KLF6)
; dyads_m18 versus MA1517.1 (KLF6); m=18/20; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.509707; ---srcCACRCCCm--- ; cor=; Ncor= a 0 0 0 443.0 1035.0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 c 0 0 0 624.0 490.0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 g 0 0 0 626.0 1157.0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 t 0 0 0 499.0 136.0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0

MA1516.1_shift3 (KLF3)
; dyads_m18 versus MA1516.1 (KLF3); m=19/20; ncol2=11; w=11; offset=2; strand=D; shift=3; score= 0.498; ---grCCrCGCCCw--- ; cor=; Ncor= a 0 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 0 c 0 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 0 g 0 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 0 t 0 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0 0

MA1578.1_shift6 (VEZF1)
; dyads_m18 versus MA1578.1 (VEZF1); m=20/20; ncol2=10; w=10; offset=5; strand=D; shift=6; score=0.458455; ------CCCCCCmytw- ; cor=; Ncor= a 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 c 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 g 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 t 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m2_shift2 ; 29 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m2_shift2 (positions_7nt_m2positions_7nt_m2)
; positions_7nt_m2 (positions_7nt_m2positions_7nt_m2); m=0 (reference); ncol1=16; shift=2; ncol=18; --skgACAGCTGCtgcss ; Alignment reference a 0 0 321 329 207 1129 5 1446 7 5 31 1 16 241 181 216 248 308 c 0 0 408 276 211 95 1445 1 11 1417 4 1 1348 150 317 551 390 407 g 0 0 518 444 983 174 1 3 1429 25 6 1447 46 120 764 352 459 437 t 0 0 206 404 52 55 2 3 6 6 1412 4 43 942 191 334 356 301

MA0499.2_rc_shift2 (MYOD1_rc)
; positions_7nt_m2 versus MA0499.2_rc (MYOD1_rc); m=1/28; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.701675; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0832.1_shift2 (Tcf21)
; positions_7nt_m2 versus MA0832.1 (Tcf21); m=2/28; ncol2=14; w=14; offset=0; strand=D; shift=2; score=0.691551; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_7nt_m2 versus MA0500.2_rc (MYOG_rc); m=3/28; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.67607; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; positions_7nt_m2 versus MA1485.1_rc (FERD3L_rc); m=4/28; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.675117; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA1641.1_shift3 (MYF5)
; positions_7nt_m2 versus MA1641.1 (MYF5); m=5/28; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.645434; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; positions_7nt_m2 versus MA1619.1 (Ptf1a(var.2)); m=6/28; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.643277; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0521.1_shift4 (Tcf12)
; positions_7nt_m2 versus MA0521.1 (Tcf12); m=7/28; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.636923; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1529.1_rc_shift0 (NHLH2_rc)
; positions_7nt_m2 versus MA1529.1_rc (NHLH2_rc); m=8/28; ncol2=18; w=16; offset=-2; strand=R; shift=0; score=0.62942; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA1621.1_rc_shift2 (Rbpjl_rc)
; positions_7nt_m2 versus MA1621.1_rc (Rbpjl_rc); m=9/28; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.623408; --grsaCAGGTGtkbs-- ; cor=; Ncor= a 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 0 c 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 0 g 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 0 t 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0 0

MA0745.2_rc_shift2 (SNAI2_rc)
; positions_7nt_m2 versus MA0745.2_rc (SNAI2_rc); m=10/28; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.615212; --rykACAGGTGcrt--- ; cor=; Ncor= a 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 c 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 g 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 t 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; positions_7nt_m2 versus MA1631.1 (ASCL1(var.2)); m=11/28; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.599001; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; positions_7nt_m2 versus MA0830.2_rc (TCF4_rc); m=12/28; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.592117; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA1618.1_shift3 (Ptf1a)
; positions_7nt_m2 versus MA1618.1 (Ptf1a); m=13/28; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.592107; ---dmaCAGATGttkh-- ; cor=; Ncor= a 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 0 c 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 0 g 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 0 t 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0 0

MA0816.1_shift4 (Ascl2)
; positions_7nt_m2 versus MA0816.1 (Ascl2); m=14/28; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.564504; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; positions_7nt_m2 versus MA1100.2_rc (ASCL1_rc); m=15/28; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.553851; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; positions_7nt_m2 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=16/28; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.552684; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; positions_7nt_m2 versus MA1467.1_rc (ATOH1(var.2)_rc); m=17/28; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.55122; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; positions_7nt_m2 versus MA1635.1 (BHLHE22(var.2)); m=18/28; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.548429; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1620.1_shift3 (Ptf1a(var.3))
; positions_7nt_m2 versus MA1620.1 (Ptf1a(var.3)); m=19/28; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.530193; ---rmaCACCTGtky--- ; cor=; Ncor= a 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 c 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 g 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 t 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0

MA0048.2_shift4 (NHLH1)
; positions_7nt_m2 versus MA0048.2 (NHLH1); m=20/28; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.522814; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; positions_7nt_m2 versus MA1648.1 (TCF12(var.2)); m=21/28; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.516462; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0665.1_shift4 (MSC)
; positions_7nt_m2 versus MA0665.1 (MSC); m=22/28; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.515719; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0522.3_shift4 (TCF3)
; positions_7nt_m2 versus MA0522.3 (TCF3); m=23/28; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.512483; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0691.1_shift4 (TFAP4)
; positions_7nt_m2 versus MA0691.1 (TFAP4); m=24/28; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.50834; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; positions_7nt_m2 versus MA0667.1_rc (MYF6_rc); m=25/28; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.484343; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0820.1_rc_shift4 (FIGLA_rc)
; positions_7nt_m2 versus MA0820.1_rc (FIGLA_rc); m=26/28; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.456943; ----wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

MA1559.1_shift4 (SNAI3)
; positions_7nt_m2 versus MA1559.1 (SNAI3); m=27/28; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.44709; ----arCAGGTGya---- ; cor=; Ncor= a 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0

MA0774.1_shift2 (MEIS2)
; positions_7nt_m2 versus MA0774.1 (MEIS2); m=28/28; ncol2=8; w=8; offset=0; strand=D; shift=2; score=0.40283; --tTGACAGs-------- ; cor=; Ncor= a 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 0 0 c 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 0 0 g 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 0 0 t 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m38_shift4 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m38_shift4 (oligos_6nt_mkv3_m38oligos_6nt_mkv3_m38)
; oligos_6nt_mkv3_m38 (oligos_6nt_mkv3_m38oligos_6nt_mkv3_m38); m=0 (reference); ncol1=11; shift=4; ncol=15; ----wwAAAATAGmm ; Alignment reference a 0 0 0 0 71 106 234 247 250 265 21 273 27 91 100 c 0 0 0 0 68 49 10 6 14 6 8 1 24 104 76 g 0 0 0 0 41 55 16 20 6 2 2 6 223 42 48 t 0 0 0 0 103 73 23 10 13 10 252 3 9 46 59

MA0497.1_shift0 (MEF2C)
; oligos_6nt_mkv3_m38 versus MA0497.1 (MEF2C); m=1/5; ncol2=15; w=11; offset=-4; strand=D; shift=0; score=0.701594; rdkcyAAAAATAGmw ; cor=; Ncor= a 705.0 733.0 431.0 382.0 0.0 1616.0 1706.0 2107.0 2131.0 2135.0 56.0 2177.0 389.0 975.0 1009.0 c 321.0 151.0 196.0 1412.0 985.0 256.0 32.0 0.0 0.0 0.0 62.0 0.0 120.0 836.0 450.0 g 676.0 573.0 822.0 78.0 0.0 74.0 241.0 87.0 2.0 4.0 0.0 32.0 1671.0 148.0 126.0 t 507.0 752.0 760.0 337.0 1224.0 263.0 230.0 15.0 76.0 70.0 2091.0 0.0 29.0 250.0 624.0

MA0052.4_shift1 (MEF2A)
; oligos_6nt_mkv3_m38 versus MA0052.4 (MEF2A); m=2/5; ncol2=15; w=11; offset=-3; strand=D; shift=1; score=0.690927; -wkcTAAAAATAGaw ; cor=; Ncor= a 0 5075.0 4033.0 1984.0 627.0 12437.0 13132.0 14680.0 14453.0 14956.0 441.0 15582.0 2566.0 7709.0 6171.0 c 0 2119.0 1960.0 10919.0 2974.0 1013.0 253.0 141.0 231.0 173.0 349.0 50.0 1060.0 4039.0 3523.0 g 0 3651.0 4493.0 1007.0 236.0 1066.0 610.0 506.0 241.0 202.0 215.0 422.0 11104.0 1605.0 1810.0 t 0 5317.0 5676.0 2252.0 12325.0 1646.0 2167.0 835.0 1237.0 831.0 15157.0 108.0 1432.0 2809.0 4658.0

MA0773.1_shift2 (MEF2D)
; oligos_6nt_mkv3_m38 versus MA0773.1 (MEF2D); m=3/5; ncol2=12; w=10; offset=-2; strand=D; shift=2; score=0.66705; --dCTAwAAATAGm- ; cor=; Ncor= a 0 0 2120.0 28.0 3.0 5803.0 2782.0 5803.0 5803.0 5803.0 0.0 5803.0 339.0 3206.0 0 c 0 0 109.0 5803.0 22.0 8.0 0.0 4.0 0.0 2.0 0.0 0.0 17.0 2598.0 0 g 0 0 1933.0 0.0 0.0 2.0 2.0 0.0 2.0 1.0 0.0 4.0 5803.0 70.0 0 t 0 0 1642.0 53.0 5803.0 6.0 3021.0 778.0 217.0 69.0 5803.0 0.0 5.0 585.0 0

MA0660.1_shift2 (MEF2B)
; oligos_6nt_mkv3_m38 versus MA0660.1 (MEF2B); m=4/5; ncol2=12; w=10; offset=-2; strand=D; shift=2; score=0.662702; --rCTAwAAATAGm- ; cor=; Ncor= a 0 0 1385.0 18.0 0.0 3150.0 1495.0 3150.0 3150.0 3150.0 0.0 3150.0 98.0 1013.0 0 c 0 0 72.0 3150.0 25.0 0.0 2.0 0.0 3.0 0.0 0.0 3.0 19.0 2138.0 0 g 0 0 1766.0 0.0 0.0 0.0 0.0 12.0 2.0 0.0 0.0 2.0 3150.0 99.0 0 t 0 0 505.0 12.0 3150.0 15.0 1655.0 710.0 143.0 45.0 3150.0 3.0 3.0 506.0 0

MA0087.1_rc_shift4 (Sox5_rc)
; oligos_6nt_mkv3_m38 versus MA0087.1_rc (Sox5_rc); m=5/5; ncol2=7; w=7; offset=0; strand=R; shift=4; score=0.450059; ----wAACAAT---- ; cor=; Ncor= a 0 0 0 0 8.0 21.0 22.0 0.0 23.0 22.0 0.0 0 0 0 0 c 0 0 0 0 4.0 0.0 0.0 22.0 0.0 1.0 0.0 0 0 0 0 g 0 0 0 0 3.0 1.0 1.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 0 8.0 1.0 0.0 1.0 0.0 0.0 23.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_7nt_m21_shift0 ; 26 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m21_shift0 (local_words_7nt_m21local_words_7nt_m21)
; local_words_7nt_m21 (local_words_7nt_m21local_words_7nt_m21); m=0 (reference); ncol1=17; shift=0; ncol=17; rvsaACAGCTGCTGcyg ; Alignment reference a 145 138 79 346 448 0 515 5 6 29 1 10 48 44 51 100 104 c 121 130 242 77 17 514 0 6 504 2 0 482 30 66 333 138 126 g 162 167 138 74 44 1 0 506 5 0 516 7 25 371 63 113 178 t 89 82 58 20 8 2 2 0 2 486 0 18 414 36 70 166 109

MA0832.1_shift1 (Tcf21)
; local_words_7nt_m21 versus MA0832.1 (Tcf21); m=1/25; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.701486; -ryAACAGCTGTTry-- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; local_words_7nt_m21 versus MA1485.1_rc (FERD3L_rc); m=2/25; ncol2=14; w=14; offset=1; strand=R; shift=1; score= 0.6565; -GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0500.2_rc_shift2 (MYOG_rc)
; local_words_7nt_m21 versus MA0500.2_rc (MYOG_rc); m=3/25; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.622397; --sarCAGCTGyts--- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0499.2_rc_shift1 (MYOD1_rc)
; local_words_7nt_m21 versus MA0499.2_rc (MYOD1_rc); m=4/25; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.616521; -rkrACAGGTGcwg--- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA1641.1_shift2 (MYF5)
; local_words_7nt_m21 versus MA1641.1 (MYF5); m=5/25; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.588566; --gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA0521.1_shift3 (Tcf12)
; local_words_7nt_m21 versus MA0521.1 (Tcf12); m=6/25; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.588462; ---rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; local_words_7nt_m21 versus MA1619.1 (Ptf1a(var.2)); m=7/25; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.586333; --rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0816.1_shift3 (Ascl2)
; local_words_7nt_m21 versus MA0816.1 (Ascl2); m=8/25; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.552716; ---arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1618.1_shift2 (Ptf1a)
; local_words_7nt_m21 versus MA1618.1 (Ptf1a); m=9/25; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.541937; --dmaCAGATGttkh-- ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0 0

MA0745.2_rc_shift1 (SNAI2_rc)
; local_words_7nt_m21 versus MA0745.2_rc (SNAI2_rc); m=10/25; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.541008; -rykACAGGTGcrt--- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0

MA1631.1_shift2 (ASCL1(var.2))
; local_words_7nt_m21 versus MA1631.1 (ASCL1(var.2)); m=11/25; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.539283; --cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; local_words_7nt_m21 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=12/25; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.521423; ---rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA0091.1_shift1 (TAL1::TCF3)
; local_words_7nt_m21 versus MA0091.1 (TAL1::TCF3); m=13/25; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.520481; -mgAmCAKMTGkT---- ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0

MA0665.1_shift3 (MSC)
; local_words_7nt_m21 versus MA0665.1 (MSC); m=14/25; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.519589; ---AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0691.1_shift3 (TFAP4)
; local_words_7nt_m21 versus MA0691.1 (TFAP4); m=15/25; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.515831; ---AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA1655.1_shift0 (ZNF341)
; local_words_7nt_m21 versus MA1655.1 (ZNF341); m=16/25; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.513899; grGAACAGCcas----- ; cor=; Ncor= a 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 0 0 0 c 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 0 0 0 g 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 0 0 0 t 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; local_words_7nt_m21 versus MA1100.2_rc (ASCL1_rc); m=17/25; ncol2=10; w=10; offset=3; strand=R; shift=3; score= 0.5028; ---rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1467.1_shift3 (ATOH1(var.2))
; local_words_7nt_m21 versus MA1467.1 (ATOH1(var.2)); m=18/25; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.500907; ---AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; local_words_7nt_m21 versus MA1635.1 (BHLHE22(var.2)); m=19/25; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.498023; ---csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA0048.2_shift3 (NHLH1)
; local_words_7nt_m21 versus MA0048.2 (NHLH1); m=20/25; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.489566; ---cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; local_words_7nt_m21 versus MA0667.1_rc (MYF6_rc); m=21/25; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.488575; ---RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA1648.1_shift3 (TCF12(var.2))
; local_words_7nt_m21 versus MA1648.1 (TCF12(var.2)); m=22/25; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.463914; ---ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift3 (TCF3)
; local_words_7nt_m21 versus MA0522.3 (TCF3); m=23/25; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.458262; ---svCACCTGCss--- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; local_words_7nt_m21 versus MA0820.1_rc (FIGLA_rc); m=24/25; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.441406; ---wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

MA1559.1_shift3 (SNAI3)
; local_words_7nt_m21 versus MA1559.1 (SNAI3); m=25/25; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.419631; ---arCAGGTGya---- ; cor=; Ncor= a 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_6nt_m1_shift1 ; 24 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m1_shift1 (positions_6nt_m1positions_6nt_m1)
; positions_6nt_m1 (positions_6nt_m1positions_6nt_m1); m=0 (reference); ncol1=16; shift=1; ncol=18; -sgcaGCAGCTGCtgcs- ; Alignment reference a 0 430 416 218 1202 160 2 1767 5 1 40 2 26 227 220 277 321 0 c 0 500 439 971 126 78 1813 14 17 1799 6 4 1557 267 407 692 572 0 g 0 571 690 412 267 1557 4 6 1798 16 14 1813 79 128 976 437 499 0 t 0 320 276 220 226 26 2 34 1 5 1761 2 159 1199 218 415 429 0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_6nt_m1 versus MA0500.2_rc (MYOG_rc); m=1/23; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.700004; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1529.1_rc_shift0 (NHLH2_rc)
; positions_6nt_m1 versus MA1529.1_rc (NHLH2_rc); m=2/23; ncol2=18; w=16; offset=-1; strand=R; shift=0; score=0.688159; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA0832.1_rc_shift2 (Tcf21_rc)
; positions_6nt_m1 versus MA0832.1_rc (Tcf21_rc); m=3/23; ncol2=14; w=14; offset=1; strand=R; shift=2; score=0.670235; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; positions_6nt_m1 versus MA1631.1 (ASCL1(var.2)); m=4/23; ncol2=13; w=13; offset=2; strand=D; shift=3; score=0.637661; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; positions_6nt_m1 versus MA1485.1_rc (FERD3L_rc); m=5/23; ncol2=14; w=14; offset=1; strand=R; shift=2; score=0.632138; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0830.2_shift3 (TCF4)
; positions_6nt_m1 versus MA0830.2 (TCF4); m=6/23; ncol2=13; w=13; offset=2; strand=D; shift=3; score=0.622941; ---cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA0816.1_shift4 (Ascl2)
; positions_6nt_m1 versus MA0816.1 (Ascl2); m=7/23; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.605778; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA0521.1_shift4 (Tcf12)
; positions_6nt_m1 versus MA0521.1 (Tcf12); m=8/23; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.605449; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; positions_6nt_m1 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=9/23; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.60132; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; positions_6nt_m1 versus MA1641.1_rc (MYF5_rc); m=10/23; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.595565; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; positions_6nt_m1 versus MA1100.2_rc (ASCL1_rc); m=11/23; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.579104; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; positions_6nt_m1 versus MA0499.2_rc (MYOD1_rc); m=12/23; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.573985; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; positions_6nt_m1 versus MA0048.2_rc (NHLH1_rc); m=13/23; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.573468; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; positions_6nt_m1 versus MA1635.1 (BHLHE22(var.2)); m=14/23; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.558983; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; positions_6nt_m1 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=15/23; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.544794; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; positions_6nt_m1 versus MA0691.1 (TFAP4); m=16/23; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.510634; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; positions_6nt_m1 versus MA1648.1 (TCF12(var.2)); m=17/23; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.508514; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift4 (TCF3)
; positions_6nt_m1 versus MA0522.3 (TCF3); m=18/23; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.501537; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; positions_6nt_m1 versus MA1467.1 (ATOH1(var.2)); m=19/23; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.497375; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; positions_6nt_m1 versus MA0665.1_rc (MSC_rc); m=20/23; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.493351; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA0667.1_shift4 (MYF6)
; positions_6nt_m1 versus MA0667.1 (MYF6); m=21/23; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.448605; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

MA1558.1_rc_shift4 (SNAI1_rc)
; positions_6nt_m1 versus MA1558.1_rc (SNAI1_rc); m=22/23; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.44633; ----yrCACCTGyh---- ; cor=; Ncor= a 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; positions_6nt_m1 versus MA0820.1 (FIGLA); m=23/23; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.445118; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_8nt_m2_shift0 ; 24 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_8nt_m2_shift0 (positions_8nt_m2positions_8nt_m2)
; positions_8nt_m2 (positions_8nt_m2positions_8nt_m2); m=0 (reference); ncol1=16; shift=0; ncol=16; vstGACAGCTGCAgss ; Alignment reference a 155 130 83 28 550 2 607 5 7 5 1 21 425 81 117 98 c 160 178 70 23 11 605 1 2 579 3 1 540 51 125 192 164 g 197 232 138 556 42 2 2 603 25 3 608 32 43 330 177 200 t 100 72 321 5 9 3 2 2 1 601 2 19 93 76 126 150

MA0499.2_rc_shift1 (MYOD1_rc)
; positions_8nt_m2 versus MA0499.2_rc (MYOD1_rc); m=1/23; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.69861; -rkrACAGGTGcwg-- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; positions_8nt_m2 versus MA1485.1_rc (FERD3L_rc); m=2/23; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.637081; -GTrACAGCTGkyrC- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0

MA0500.2_rc_shift2 (MYOG_rc)
; positions_8nt_m2 versus MA0500.2_rc (MYOG_rc); m=3/23; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.628543; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA0745.2_rc_shift1 (SNAI2_rc)
; positions_8nt_m2 versus MA0745.2_rc (SNAI2_rc); m=4/23; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.625459; -rykACAGGTGcrt-- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0

MA0521.1_shift3 (Tcf12)
; positions_8nt_m2 versus MA0521.1 (Tcf12); m=5/23; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.624849; ---rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA0832.1_shift1 (Tcf21)
; positions_8nt_m2 versus MA0832.1 (Tcf21); m=6/23; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.612548; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0

MA1641.1_shift2 (MYF5)
; positions_8nt_m2 versus MA1641.1 (MYF5); m=7/23; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.609535; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; positions_8nt_m2 versus MA1619.1 (Ptf1a(var.2)); m=8/23; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.608135; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA0830.2_rc_shift1 (TCF4_rc)
; positions_8nt_m2 versus MA0830.2_rc (TCF4_rc); m=9/23; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.569396; -ssggCAGGTGccg-- ; cor=; Ncor= a 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 c 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 g 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 t 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0

MA0796.1_shift2 (TGIF1)
; positions_8nt_m2 versus MA0796.1 (TGIF1); m=10/23; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.527224; --TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 c 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 g 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 t 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; positions_8nt_m2 versus MA1635.1 (BHLHE22(var.2)); m=11/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.524737; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0

MA1100.2_shift3 (ASCL1)
; positions_8nt_m2 versus MA1100.2 (ASCL1); m=12/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.523919; ---rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; positions_8nt_m2 versus MA1467.1_rc (ATOH1(var.2)_rc); m=13/23; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.512525; ---RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; positions_8nt_m2 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=14/23; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.510098; ---rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0

MA0816.1_shift3 (Ascl2)
; positions_8nt_m2 versus MA0816.1 (Ascl2); m=15/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.509417; ---arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA1648.1_shift3 (TCF12(var.2))
; positions_8nt_m2 versus MA1648.1 (TCF12(var.2)); m=16/23; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.485922; ---ssCACCTGCys-- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0

MA0522.3_shift3 (TCF3)
; positions_8nt_m2 versus MA0522.3 (TCF3); m=17/23; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.484932; ---svCACCTGCss-- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0

MA0048.2_rc_shift3 (NHLH1_rc)
; positions_8nt_m2 versus MA0048.2_rc (NHLH1_rc); m=18/23; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.474448; ---mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA1559.1_shift3 (SNAI3)
; positions_8nt_m2 versus MA1559.1 (SNAI3); m=19/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.46943; ---arCAGGTGya--- ; cor=; Ncor= a 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 c 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 g 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 t 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0

MA0665.1_shift3 (MSC)
; positions_8nt_m2 versus MA0665.1 (MSC); m=20/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.456438; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0

MA0691.1_shift3 (TFAP4)
; positions_8nt_m2 versus MA0691.1 (TFAP4); m=21/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.451443; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0

MA0774.1_shift1 (MEIS2)
; positions_8nt_m2 versus MA0774.1 (MEIS2); m=22/23; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.440507; -tTGACAGs------- ; cor=; Ncor= a 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 0 c 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 0 g 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 0 t 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0 0

MA0775.1_shift1 (MEIS3)
; positions_8nt_m2 versus MA0775.1 (MEIS3); m=23/23; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.421683; -wTGACAgs------- ; cor=; Ncor= a 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 0 c 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 0 g 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 0 t 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m5_shift1 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m5_shift1 (local_words_8nt_m5local_words_8nt_m5)
; local_words_8nt_m5 (local_words_8nt_m5local_words_8nt_m5); m=0 (reference); ncol1=17; shift=1; ncol=18; -rssCACAGCTGCTGCyg ; Alignment reference a 0 101 66 47 32 297 0 340 2 2 26 0 2 16 15 25 56 72 c 0 75 97 98 256 21 342 1 8 336 0 0 325 10 28 263 92 85 g 0 96 127 141 46 14 1 3 334 5 1 345 4 10 290 29 75 125 t 0 73 55 59 11 13 2 1 1 2 318 0 14 309 12 28 122 63

MA1529.1_rc_shift0 (NHLH2_rc)
; local_words_8nt_m5 versus MA1529.1_rc (NHLH2_rc); m=1/20; ncol2=18; w=17; offset=-1; strand=R; shift=0; score=0.698411; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_8nt_m5 versus MA1485.1_rc (FERD3L_rc); m=2/20; ncol2=14; w=14; offset=1; strand=R; shift=2; score=0.638598; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0832.1_shift2 (Tcf21)
; local_words_8nt_m5 versus MA0832.1 (Tcf21); m=3/20; ncol2=14; w=14; offset=1; strand=D; shift=2; score=0.622539; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; local_words_8nt_m5 versus MA0499.2_rc (MYOD1_rc); m=4/20; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.591167; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0500.2_shift3 (MYOG)
; local_words_8nt_m5 versus MA0500.2 (MYOG); m=5/20; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.587235; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; local_words_8nt_m5 versus MA1619.1 (Ptf1a(var.2)); m=6/20; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.573165; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1641.1_shift3 (MYF5)
; local_words_8nt_m5 versus MA1641.1 (MYF5); m=7/20; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.568184; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA0521.1_shift4 (Tcf12)
; local_words_8nt_m5 versus MA0521.1 (Tcf12); m=8/20; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.545912; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA0816.1_shift4 (Ascl2)
; local_words_8nt_m5 versus MA0816.1 (Ascl2); m=9/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.508512; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; local_words_8nt_m5 versus MA0048.2 (NHLH1); m=10/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.504654; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; local_words_8nt_m5 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.500576; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; local_words_8nt_m5 versus MA1635.1 (BHLHE22(var.2)); m=12/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.491811; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; local_words_8nt_m5 versus MA1100.2_rc (ASCL1_rc); m=13/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.485731; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA0665.1_shift4 (MSC)
; local_words_8nt_m5 versus MA0665.1 (MSC); m=14/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.474296; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; local_words_8nt_m5 versus MA1467.1_rc (ATOH1(var.2)_rc); m=15/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.473299; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; local_words_8nt_m5 versus MA0691.1 (TFAP4); m=16/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.472745; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; local_words_8nt_m5 versus MA1648.1 (TCF12(var.2)); m=17/20; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.460067; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift4 (TCF3)
; local_words_8nt_m5 versus MA0522.3 (TCF3); m=18/20; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.454829; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; local_words_8nt_m5 versus MA0667.1_rc (MYF6_rc); m=19/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.443826; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0820.1_rc_shift4 (FIGLA_rc)
; local_words_8nt_m5 versus MA0820.1_rc (FIGLA_rc); m=20/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.417491; ----wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m20_shift0 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m20_shift0 (local_words_8nt_m20local_words_8nt_m20)
; local_words_8nt_m20 (local_words_8nt_m20local_words_8nt_m20); m=0 (reference); ncol1=17; shift=0; ncol=18; crGCAGCAGCTGTGssy- ; Alignment reference a 64 121 28 12 309 14 0 318 2 1 1 2 13 11 59 55 74 0 c 125 76 29 291 10 4 345 1 5 334 3 1 14 47 142 128 96 0 g 85 92 263 28 10 325 0 0 336 8 1 342 21 255 98 97 74 0 t 71 56 25 14 16 2 0 26 2 2 340 0 297 32 46 65 101 0

MA1529.1_shift0 (NHLH2)
; local_words_8nt_m20 versus MA1529.1 (NHLH2); m=1/20; ncol2=18; w=17; offset=0; strand=D; shift=0; score=0.698111; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA1485.1_shift2 (FERD3L)
; local_words_8nt_m20 versus MA1485.1 (FERD3L); m=2/20; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.638926; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; local_words_8nt_m20 versus MA0832.1_rc (Tcf21_rc); m=3/20; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.62249; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA0499.2_shift3 (MYOD1)
; local_words_8nt_m20 versus MA0499.2 (MYOD1); m=4/20; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.591268; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; local_words_8nt_m20 versus MA0500.2_rc (MYOG_rc); m=5/20; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.587173; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_8nt_m20 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=6/20; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.573024; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; local_words_8nt_m20 versus MA1641.1_rc (MYF5_rc); m=7/20; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.568098; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_8nt_m20 versus MA0521.1_rc (Tcf12_rc); m=8/20; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.546008; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_8nt_m20 versus MA0816.1_rc (Ascl2_rc); m=9/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.50868; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_8nt_m20 versus MA0048.2_rc (NHLH1_rc); m=10/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.50461; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_8nt_m20 versus MA1472.1 (BHLHA15(var.2)); m=11/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.50074; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_8nt_m20 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=12/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.491929; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_8nt_m20 versus MA1100.2 (ASCL1); m=13/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.485917; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; local_words_8nt_m20 versus MA0665.1_rc (MSC_rc); m=14/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.474485; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; local_words_8nt_m20 versus MA1467.1 (ATOH1(var.2)); m=15/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.47364; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; local_words_8nt_m20 versus MA0691.1_rc (TFAP4_rc); m=16/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.472868; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; local_words_8nt_m20 versus MA1648.1_rc (TCF12(var.2)_rc); m=17/20; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.460065; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; local_words_8nt_m20 versus MA0522.3_rc (TCF3_rc); m=18/20; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.454815; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA0667.1_shift4 (MYF6)
; local_words_8nt_m20 versus MA0667.1 (MYF6); m=19/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.444024; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; local_words_8nt_m20 versus MA0820.1 (FIGLA); m=20/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.417608; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m11_shift1 ; 18 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m11_shift1 (oligos_7nt_mkv4_m11oligos_7nt_mkv4_m11)
; oligos_7nt_mkv4_m11 (oligos_7nt_mkv4_m11oligos_7nt_mkv4_m11); m=0 (reference); ncol1=16; shift=1; ncol=17; -scgGCCCCGCCCCGss ; Alignment reference a 0 15 25 16 5 2 1 0 2 6 0 1 3 3 6 9 11 c 0 64 59 33 15 123 119 122 127 2 128 122 118 117 23 68 60 g 0 41 32 73 108 4 10 10 3 118 4 9 10 8 95 38 41 t 0 13 17 11 5 4 3 1 1 7 1 1 2 5 9 18 21

MA0079.4_shift1 (SP1)
; oligos_7nt_mkv4_m11 versus MA0079.4 (SP1); m=1/17; ncol2=15; w=15; offset=0; strand=D; shift=1; score=0.695487; -ywrRCCACGCCCmCh- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0

MA0685.1_shift1 (SP4)
; oligos_7nt_mkv4_m11 versus MA0685.1 (SP4); m=2/17; ncol2=17; w=16; offset=0; strand=D; shift=1; score=0.690852; -ywrGCCACGCCCmCty ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0

MA0516.2_shift0 (SP2)
; oligos_7nt_mkv4_m11 versus MA0516.2 (SP2); m=3/17; ncol2=17; w=16; offset=-1; strand=D; shift=0; score=0.669374; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0

MA1513.1_shift4 (KLF15)
; oligos_7nt_mkv4_m11 versus MA1513.1 (KLF15); m=4/17; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.640475; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0

MA0746.2_shift3 (SP3)
; oligos_7nt_mkv4_m11 versus MA0746.2 (SP3); m=5/17; ncol2=13; w=13; offset=2; strand=D; shift=3; score=0.631205; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0

MA0740.1_shift3 (KLF14)
; oligos_7nt_mkv4_m11 versus MA0740.1 (KLF14); m=6/17; ncol2=14; w=14; offset=2; strand=D; shift=3; score=0.621678; ---krcCACGCCCmYyt ; cor=; Ncor= a 0 0 0 430.0 1205.0 526.0 0.0 1708.0 2.0 69.0 0.0 0.0 0.0 716.0 32.0 280.0 649.0 c 0 0 0 215.0 73.0 1360.0 1599.0 136.0 1596.0 36.0 1602.0 1604.0 1609.0 961.0 1463.0 594.0 741.0 g 0 0 0 966.0 2280.0 96.0 10.0 58.0 0.0 2939.0 3.0 3.0 4.0 1.0 15.0 89.0 314.0 t 0 0 0 693.0 71.0 404.0 248.0 5.0 2.0 31.0 0.0 6.0 65.0 31.0 559.0 1041.0 1670.0

MA0039.4_shift3 (KLF4)
; oligos_7nt_mkv4_m11 versus MA0039.4 (KLF4); m=7/17; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.589805; ---ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0

MA1564.1_shift4 (SP9)
; oligos_7nt_mkv4_m11 versus MA1564.1 (SP9); m=8/17; ncol2=12; w=12; offset=3; strand=D; shift=4; score=0.58881; ----rcCmCGCCCmcy- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0

MA1653.1_shift3 (ZNF148)
; oligos_7nt_mkv4_m11 versus MA1653.1 (ZNF148); m=9/17; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.588411; ---ysCCCCTCCCcc-- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0

MA0599.1_shift4 (KLF5)
; oligos_7nt_mkv4_m11 versus MA0599.1 (KLF5); m=10/17; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.565908; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA1515.1_shift3 (KLF2)
; oligos_7nt_mkv4_m11 versus MA1515.1 (KLF2); m=11/17; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.555502; ---srCCmCrCCCw--- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0

MA0747.1_shift4 (SP8)
; oligos_7nt_mkv4_m11 versus MA0747.1 (SP8); m=12/17; ncol2=12; w=12; offset=3; strand=D; shift=4; score=0.544211; ----rmCACgCCCmCy- ; cor=; Ncor= a 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 c 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 g 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 t 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0

MA0741.1_shift4 (KLF16)
; oligos_7nt_mkv4_m11 versus MA0741.1 (KLF16); m=13/17; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.542614; ----gmCMCgCCCMC-- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0

MA1516.1_shift3 (KLF3)
; oligos_7nt_mkv4_m11 versus MA1516.1 (KLF3); m=14/17; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.538674; ---grCCrCGCCCw--- ; cor=; Ncor= a 0 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 0 c 0 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 0 g 0 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 0 t 0 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0 0

MA1522.1_shift3 (MAZ)
; oligos_7nt_mkv4_m11 versus MA1522.1 (MAZ); m=15/17; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.538146; ---ssCCCCTCCcc--- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0

MA1517.1_shift3 (KLF6)
; oligos_7nt_mkv4_m11 versus MA1517.1 (KLF6); m=16/17; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.519823; ---srcCACRCCCm--- ; cor=; Ncor= a 0 0 0 443.0 1035.0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 c 0 0 0 624.0 490.0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 g 0 0 0 626.0 1157.0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 t 0 0 0 499.0 136.0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0

MA1512.1_shift4 (KLF11)
; oligos_7nt_mkv4_m11 versus MA1512.1 (KLF11); m=17/17; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.498498; ----gcCACGCCCmC-- ; cor=; Ncor= a 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 c 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 g 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 t 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0

One-to-n matrix alignment; reference matrix: dyads_m10_shift4 ; 27 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m10_shift4 (dyads_m10dyads_m10)
; dyads_m10 (dyads_m10dyads_m10); m=0 (reference); ncol1=15; shift=4; ncol=19; ----sstGACAGCTGGGvs ; Alignment reference a 0 0 0 0 73 85 43 3 314 0 350 2 3 2 1 31 21 100 77 c 0 0 0 0 93 98 33 5 8 351 0 1 341 1 1 31 28 100 95 g 0 0 0 0 126 137 53 342 26 0 1 346 7 0 348 258 278 106 110 t 0 0 0 0 59 31 222 1 3 0 0 2 0 348 1 31 24 45 69

MA1485.1_rc_shift5 (FERD3L_rc)
; dyads_m10 versus MA1485.1_rc (FERD3L_rc); m=1/26; ncol2=14; w=14; offset=1; strand=R; shift=5; score=0.695261; -----GTrACAGCTGkyrC ; cor=; Ncor= a 0 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 0 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0

MA0499.2_rc_shift5 (MYOD1_rc)
; dyads_m10 versus MA0499.2_rc (MYOD1_rc); m=2/26; ncol2=13; w=13; offset=1; strand=R; shift=5; score=0.673195; -----rkrACAGGTGcwg- ; cor=; Ncor= a 0 0 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 0 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 0 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 0 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0

MA1619.1_rc_shift6 (Ptf1a(var.2)_rc)
; dyads_m10 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=3/26; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.664088; ------rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 c 0 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 g 0 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 t 0 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0

MA1641.1_rc_shift6 (MYF5_rc)
; dyads_m10 versus MA1641.1_rc (MYF5_rc); m=4/26; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.661783; ------gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0

MA1109.1_shift6 (NEUROD1)
; dyads_m10 versus MA1109.1 (NEUROD1); m=5/26; ncol2=13; w=13; offset=2; strand=D; shift=6; score=0.645858; ------graCAGATGGyrs ; cor=; Ncor= a 0 0 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 c 0 0 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 g 0 0 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 t 0 0 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0

MA0521.1_shift7 (Tcf12)
; dyads_m10 versus MA0521.1 (Tcf12); m=6/26; ncol2=11; w=11; offset=3; strand=D; shift=7; score=0.643559; -------rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA1123.2_rc_shift6 (TWIST1_rc)
; dyads_m10 versus MA1123.2_rc (TWIST1_rc); m=7/26; ncol2=13; w=13; offset=2; strand=R; shift=6; score=0.626127; ------avaCATCTGGwwt ; cor=; Ncor= a 0 0 0 0 0 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 c 0 0 0 0 0 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 g 0 0 0 0 0 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 t 0 0 0 0 0 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0

MA0500.2_rc_shift6 (MYOG_rc)
; dyads_m10 versus MA0500.2_rc (MYOG_rc); m=8/26; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.622259; ------sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA1642.1_shift5 (NEUROG2(var.2))
; dyads_m10 versus MA1642.1 (NEUROG2(var.2)); m=9/26; ncol2=13; w=13; offset=1; strand=D; shift=5; score=0.61735; -----rrraCAGATGGyv- ; cor=; Ncor= a 0 0 0 0 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 9464.0 0 c 0 0 0 0 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 9034.0 0 g 0 0 0 0 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 8709.0 0 t 0 0 0 0 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0 7184.0 0

MA0796.1_shift6 (TGIF1)
; dyads_m10 versus MA0796.1 (TGIF1); m=10/26; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.601938; ------TGACAGCTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 c 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 g 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 t 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0

MA1571.1_rc_shift6 (TGIF2LX_rc)
; dyads_m10 versus MA1571.1_rc (TGIF2LX_rc); m=11/26; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.59735; ------TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0

MA0797.1_shift6 (TGIF2)
; dyads_m10 versus MA0797.1 (TGIF2); m=12/26; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.588764; ------TGACAGsTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0

MA1572.1_rc_shift6 (TGIF2LY_rc)
; dyads_m10 versus MA1572.1_rc (TGIF2LY_rc); m=13/26; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.583355; ------TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0

MA1467.1_rc_shift7 (ATOH1(var.2)_rc)
; dyads_m10 versus MA1467.1_rc (ATOH1(var.2)_rc); m=14/26; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.554252; -------RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0

MA1635.1_shift7 (BHLHE22(var.2))
; dyads_m10 versus MA1635.1 (BHLHE22(var.2)); m=15/26; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.554121; -------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA1472.1_rc_shift7 (BHLHA15(var.2)_rc)
; dyads_m10 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=16/26; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.548067; -------rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0

MA1100.2_shift7 (ASCL1)
; dyads_m10 versus MA1100.2 (ASCL1); m=17/26; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.513545; -------rrCAGCTGcy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA0048.2_rc_shift7 (NHLH1_rc)
; dyads_m10 versus MA0048.2_rc (NHLH1_rc); m=18/26; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.494711; -------mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA0816.1_rc_shift7 (Ascl2_rc)
; dyads_m10 versus MA0816.1_rc (Ascl2_rc); m=19/26; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.493175; -------rrCAGCTGyt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 c 0 0 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 g 0 0 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 t 0 0 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0

MA0691.1_rc_shift7 (TFAP4_rc)
; dyads_m10 versus MA0691.1_rc (TFAP4_rc); m=20/26; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.485796; -------AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 c 0 0 0 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 g 0 0 0 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 t 0 0 0 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0

MA0665.1_shift7 (MSC)
; dyads_m10 versus MA0665.1 (MSC); m=21/26; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.480345; -------AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 0 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 0 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0

MA0774.1_shift5 (MEIS2)
; dyads_m10 versus MA0774.1 (MEIS2); m=22/26; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.474822; -----tTGACAGs------ ; cor=; Ncor= a 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 c 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 g 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 t 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0

MA0820.1_rc_shift7 (FIGLA_rc)
; dyads_m10 versus MA0820.1_rc (FIGLA_rc); m=23/26; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.470987; -------wmCAGGTGkw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0

MA0775.1_shift5 (MEIS3)
; dyads_m10 versus MA0775.1 (MEIS3); m=24/26; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.456813; -----wTGACAgs------ ; cor=; Ncor= a 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 c 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 g 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 t 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0

MA0782.2_shift0 (PKNOX1)
; dyads_m10 versus MA0782.2 (PKNOX1); m=25/26; ncol2=15; w=11; offset=-4; strand=D; shift=0; score=0.420658; twTGAgTGACAGctr---- ; cor=; Ncor= a 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 0 0 0 c 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 0 0 0 g 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 0 0 0 t 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0 0 0 0

MA0498.2_shift5 (MEIS1)
; dyads_m10 versus MA0498.2 (MEIS1); m=26/26; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.420615; -----wTGACAg------- ; cor=; Ncor= a 0 0 0 0 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 0 0 0 c 0 0 0 0 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 0 0 0 g 0 0 0 0 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 0 0 0 t 0 0 0 0 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m20_shift1 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m20_shift1 (oligos_8nt_mkv5_m20oligos_8nt_mkv5_m20)
; oligos_8nt_mkv5_m20 (oligos_8nt_mkv5_m20oligos_8nt_mkv5_m20); m=0 (reference); ncol1=12; shift=1; ncol=17; -msCCACAGCCvs---- ; Alignment reference a 0 70 45 1 0 207 2 185 0 4 0 59 35 0 0 0 0 c 0 66 59 220 214 2 220 23 2 217 220 56 80 0 0 0 0 g 0 53 91 2 6 13 0 14 216 0 2 70 70 0 0 0 0 t 0 34 28 0 3 1 1 1 5 2 1 38 38 0 0 0 0

MA0493.1_shift1 (Klf1)
; oligos_8nt_mkv5_m20 versus MA0493.1 (Klf1); m=1/6; ncol2=11; w=11; offset=0; strand=D; shift=1; score=0.694362; -rrCCACACCCw----- ; cor=; Ncor= a 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 0 0 c 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 0 0 g 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0 0 0

MA1511.1_shift2 (KLF10)
; oligos_8nt_mkv5_m20 versus MA1511.1 (KLF10); m=2/6; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.675201; --gmCACrCCCmy---- ; cor=; Ncor= a 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 0 0 c 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 0 0 g 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 0 0 t 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0 0 0

MA0002.2_rc_shift0 (RUNX1_rc)
; oligos_8nt_mkv5_m20 versus MA0002.2_rc (RUNX1_rc); m=3/6; ncol2=11; w=10; offset=-1; strand=R; shift=0; score=0.596518; waaCCACAram------ ; cor=; Ncor= a 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 0 0 0 0 0 c 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 0 0 0 0 0 g 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 0 0 0 0 0 t 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0 0 0 0 0 0

MA1107.2_shift0 (KLF9)
; oligos_8nt_mkv5_m20 versus MA1107.2 (KLF9); m=4/6; ncol2=16; w=12; offset=-1; strand=D; shift=0; score=0.564367; crgCCACACCCAChyc- ; cor=; Ncor= a 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 5875.0 0 c 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 9519.0 0 g 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 5681.0 0 t 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0 4504.0 0

MA1596.1_shift2 (ZNF460)
; oligos_8nt_mkv5_m20 versus MA1596.1 (ZNF460); m=5/6; ncol2=16; w=11; offset=1; strand=D; shift=2; score=0.464492; --rCCTCmGCCTCCCrr ; cor=; Ncor= a 0 0 412.0 49.0 19.0 27.0 17.0 851.0 61.0 6.0 1.0 13.0 3.0 5.0 12.0 516.0 987.0 c 0 0 131.0 1264.0 1460.0 218.0 1519.0 495.0 23.0 1588.0 1596.0 12.0 1584.0 1583.0 1533.0 110.0 175.0 g 0 0 1023.0 185.0 67.0 83.0 47.0 181.0 1493.0 7.0 9.0 17.0 15.0 15.0 27.0 930.0 421.0 t 0 0 46.0 114.0 66.0 1284.0 29.0 85.0 35.0 11.0 6.0 1570.0 10.0 9.0 40.0 56.0 29.0

MA0130.1_shift1 (ZNF354C)
; oligos_8nt_mkv5_m20 versus MA0130.1 (ZNF354C); m=6/6; ncol2=6; w=6; offset=0; strand=D; shift=1; score=0.454683; -mTCCAC---------- ; cor=; Ncor= a 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 0 0 0 c 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 0 0 0 g 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 0 0 0 t 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m22_shift0 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m22_shift0 (local_words_8nt_m22local_words_8nt_m22)
; local_words_8nt_m22 (local_words_8nt_m22local_words_8nt_m22); m=0 (reference); ncol1=17; shift=0; ncol=17; crGCAGCAGCTGTTsyy ; Alignment reference a 74 114 35 15 295 11 0 306 1 0 1 2 4 10 34 56 56 c 119 61 29 273 11 4 332 0 3 325 0 1 40 38 101 112 106 g 70 100 244 25 9 312 0 2 326 5 0 330 14 35 151 76 80 t 70 58 25 20 18 6 1 25 3 3 332 0 275 250 47 89 91

MA0832.1_rc_shift2 (Tcf21_rc)
; local_words_8nt_m22 versus MA0832.1_rc (Tcf21_rc); m=1/20; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.694352; --ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA1485.1_shift2 (FERD3L)
; local_words_8nt_m22 versus MA1485.1 (FERD3L); m=2/20; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.65567; --GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0500.2_shift3 (MYOG)
; local_words_8nt_m22 versus MA0500.2 (MYOG); m=3/20; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.611431; ---sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA0499.2_shift3 (MYOD1)
; local_words_8nt_m22 versus MA0499.2 (MYOD1); m=4/20; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.598172; ---cwgCACCTGTymy- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_8nt_m22 versus MA0521.1_rc (Tcf12_rc); m=5/20; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.576193; ---cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; local_words_8nt_m22 versus MA1641.1_rc (MYF5_rc); m=6/20; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.572223; ---gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_8nt_m22 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/20; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.569363; ---rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_8nt_m22 versus MA0816.1_rc (Ascl2_rc); m=8/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.553193; ----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA0091.1_rc_shift4 (TAL1::TCF3_rc)
; local_words_8nt_m22 versus MA0091.1_rc (TAL1::TCF3_rc); m=9/20; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.526952; ----AmCAKMTGkTck- ; cor=; Ncor= a 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 0 c 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 0 g 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 0 t 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0 0

MA1655.1_rc_shift5 (ZNF341_rc)
; local_words_8nt_m22 versus MA1655.1_rc (ZNF341_rc); m=10/20; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.522664; -----stgGCTGTTCyc ; cor=; Ncor= a 0 0 0 0 0 3536.0 4320.0 2411.0 228.0 229.0 234.0 581.0 241.0 186.0 1442.0 2599.0 4408.0 c 0 0 0 0 0 5691.0 4672.0 2289.0 270.0 17972.0 468.0 1033.0 576.0 513.0 13739.0 8832.0 5798.0 g 0 0 0 0 0 5745.0 4431.0 10946.0 18003.0 359.0 399.0 16813.0 211.0 955.0 2043.0 2180.0 4256.0 t 0 0 0 0 0 3756.0 5305.0 3082.0 227.0 168.0 17627.0 301.0 17700.0 17074.0 1504.0 5117.0 4266.0

MA0665.1_rc_shift4 (MSC_rc)
; local_words_8nt_m22 versus MA0665.1_rc (MSC_rc); m=11/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.520493; ----AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_8nt_m22 versus MA1472.1 (BHLHA15(var.2)); m=12/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.516956; ----avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; local_words_8nt_m22 versus MA0691.1_rc (TFAP4_rc); m=13/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.51635; ----AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_8nt_m22 versus MA1100.2 (ASCL1); m=14/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.497027; ----rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; local_words_8nt_m22 versus MA1467.1_rc (ATOH1(var.2)_rc); m=15/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.495535; ----RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_8nt_m22 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=16/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.489747; ----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA0667.1_shift4 (MYF6)
; local_words_8nt_m22 versus MA0667.1 (MYF6); m=17/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.488644; ----AACArCTGTY--- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_8nt_m22 versus MA0048.2_rc (NHLH1_rc); m=18/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.484239; ----mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; local_words_8nt_m22 versus MA1648.1_rc (TCF12(var.2)_rc); m=19/20; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.453492; ---srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0

MA0820.1_shift4 (FIGLA)
; local_words_8nt_m22 versus MA0820.1 (FIGLA); m=20/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.437676; ----wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m23_shift0 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m23_shift0 (local_words_8nt_m23local_words_8nt_m23)
; local_words_8nt_m23 (local_words_8nt_m23local_words_8nt_m23); m=0 (reference); ncol1=17; shift=0; ncol=18; crGCAGCAGCTGTGgst- ; Alignment reference a 71 135 32 15 315 14 0 314 1 1 1 1 12 10 68 50 72 0 c 127 59 20 291 4 2 348 2 4 337 4 1 19 40 86 121 78 0 g 77 95 276 30 12 332 0 1 340 9 2 347 26 274 141 103 86 0 t 74 60 21 13 18 1 1 32 4 2 342 0 292 25 54 75 113 0

MA1529.1_shift0 (NHLH2)
; local_words_8nt_m23 versus MA1529.1 (NHLH2); m=1/20; ncol2=18; w=17; offset=0; strand=D; shift=0; score=0.692509; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA1485.1_shift2 (FERD3L)
; local_words_8nt_m23 versus MA1485.1 (FERD3L); m=2/20; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.637383; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; local_words_8nt_m23 versus MA0832.1_rc (Tcf21_rc); m=3/20; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.619093; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; local_words_8nt_m23 versus MA0500.2_rc (MYOG_rc); m=4/20; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.584967; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0499.2_shift3 (MYOD1)
; local_words_8nt_m23 versus MA0499.2 (MYOD1); m=5/20; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.582375; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_8nt_m23 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=6/20; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.568908; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; local_words_8nt_m23 versus MA1641.1_rc (MYF5_rc); m=7/20; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.562824; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_8nt_m23 versus MA0521.1_rc (Tcf12_rc); m=8/20; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.540312; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_8nt_m23 versus MA0816.1_rc (Ascl2_rc); m=9/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.505175; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_8nt_m23 versus MA0048.2_rc (NHLH1_rc); m=10/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.505017; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_8nt_m23 versus MA1472.1 (BHLHA15(var.2)); m=11/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.496964; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_8nt_m23 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=12/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.489426; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_8nt_m23 versus MA1100.2 (ASCL1); m=13/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.483337; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; local_words_8nt_m23 versus MA0665.1_rc (MSC_rc); m=14/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.468436; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; local_words_8nt_m23 versus MA1467.1 (ATOH1(var.2)); m=15/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.467686; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; local_words_8nt_m23 versus MA0691.1_rc (TFAP4_rc); m=16/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.46757; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; local_words_8nt_m23 versus MA1648.1_rc (TCF12(var.2)_rc); m=17/20; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.459601; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; local_words_8nt_m23 versus MA0522.3_rc (TCF3_rc); m=18/20; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.454373; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA0667.1_shift4 (MYF6)
; local_words_8nt_m23 versus MA0667.1 (MYF6); m=19/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.437336; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; local_words_8nt_m23 versus MA0820.1 (FIGLA); m=20/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.412672; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m43_shift3 ; 25 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m43_shift3 (oligos_8nt_mkv5_m43oligos_8nt_mkv5_m43)
; oligos_8nt_mkv5_m43 (oligos_8nt_mkv5_m43oligos_8nt_mkv5_m43); m=0 (reference); ncol1=12; shift=3; ncol=15; ---rCAGCTGGTGss ; Alignment reference a 0 0 0 70 15 227 0 2 2 0 0 0 1 46 40 c 0 0 0 51 172 2 3 223 3 1 0 4 0 62 74 g 0 0 0 83 33 0 223 1 4 228 228 2 228 70 70 t 0 0 0 25 9 0 3 3 220 0 1 223 0 51 45

MA1648.1_rc_shift4 (TCF12(var.2)_rc)
; oligos_8nt_mkv5_m43 versus MA1648.1_rc (TCF12(var.2)_rc); m=1/24; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.688962; ----srGCAGGTGss ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0

MA0522.3_rc_shift4 (TCF3_rc)
; oligos_8nt_mkv5_m43 versus MA0522.3_rc (TCF3_rc); m=2/24; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.680551; ----ssGCAGGTGbs ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0

MA1631.1_rc_shift3 (ASCL1(var.2)_rc)
; oligos_8nt_mkv5_m43 versus MA1631.1_rc (ASCL1(var.2)_rc); m=3/24; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.66151; ---gsrGCAGGTGch ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0

MA0091.1_rc_shift2 (TAL1::TCF3_rc)
; oligos_8nt_mkv5_m43 versus MA0091.1_rc (TAL1::TCF3_rc); m=4/24; ncol2=12; w=11; offset=-1; strand=R; shift=2; score=0.639078; --AmCAKMTGkTck- ; cor=; Ncor= a 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 0 c 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 0 g 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 0 t 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0 0

MA0521.1_shift2 (Tcf12)
; oligos_8nt_mkv5_m43 versus MA0521.1 (Tcf12); m=5/24; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.61688; --rRCAGCTGswg-- ; cor=; Ncor= a 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA1558.1_shift5 (SNAI1)
; oligos_8nt_mkv5_m43 versus MA1558.1 (SNAI1); m=6/24; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.597094; -----drCAGGTGyr ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0

MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)
; oligos_8nt_mkv5_m43 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=7/24; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.59172; --rrCAGCTGbt--- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0

MA0816.1_rc_shift2 (Ascl2_rc)
; oligos_8nt_mkv5_m43 versus MA0816.1_rc (Ascl2_rc); m=8/24; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.590129; --rrCAGCTGyt--- ; cor=; Ncor= a 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA0691.1_rc_shift2 (TFAP4_rc)
; oligos_8nt_mkv5_m43 versus MA0691.1_rc (TFAP4_rc); m=9/24; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.589994; --AwCAGCTGwT--- ; cor=; Ncor= a 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA1485.1_rc_shift0 (FERD3L_rc)
; oligos_8nt_mkv5_m43 versus MA1485.1_rc (FERD3L_rc); m=10/24; ncol2=14; w=11; offset=-3; strand=R; shift=0; score=0.58709; GTrACAGCTGkyrC- ; cor=; Ncor= a 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0

MA1635.1_shift2 (BHLHE22(var.2))
; oligos_8nt_mkv5_m43 versus MA1635.1 (BHLHE22(var.2)); m=11/24; ncol2=10; w=9; offset=-1; strand=D; shift=2; score=0.581777; --csCAGCTGsg--- ; cor=; Ncor= a 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0

MA0832.1_shift0 (Tcf21)
; oligos_8nt_mkv5_m43 versus MA0832.1 (Tcf21); m=12/24; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.574059; ryAACAGCTGTTry- ; cor=; Ncor= a 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0

MA1467.1_rc_shift2 (ATOH1(var.2)_rc)
; oligos_8nt_mkv5_m43 versus MA1467.1_rc (ATOH1(var.2)_rc); m=13/24; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.572077; --RACAGCTGTT--- ; cor=; Ncor= a 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0

MA0665.1_rc_shift2 (MSC_rc)
; oligos_8nt_mkv5_m43 versus MA0665.1_rc (MSC_rc); m=14/24; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.564839; --AACAGCTGTT--- ; cor=; Ncor= a 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA0500.2_rc_shift1 (MYOG_rc)
; oligos_8nt_mkv5_m43 versus MA0500.2_rc (MYOG_rc); m=15/24; ncol2=12; w=10; offset=-2; strand=R; shift=1; score=0.561942; -sarCAGCTGyts-- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA1109.1_shift1 (NEUROD1)
; oligos_8nt_mkv5_m43 versus MA1109.1 (NEUROD1); m=16/24; ncol2=13; w=11; offset=-2; strand=D; shift=1; score=0.553564; -graCAGATGGyrs- ; cor=; Ncor= a 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 0 c 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 0 g 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 0 t 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0 0

MA1628.1_shift2 (Zic1::Zic2)
; oligos_8nt_mkv5_m43 versus MA1628.1 (Zic1::Zic2); m=17/24; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.549196; --cvCAGCAGGsr-- ; cor=; Ncor= a 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 0 c 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 0 g 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 0 t 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0 0

MA0820.1_rc_shift2 (FIGLA_rc)
; oligos_8nt_mkv5_m43 versus MA0820.1_rc (FIGLA_rc); m=18/24; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.535726; --wmCAGGTGkw--- ; cor=; Ncor= a 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0

MA1619.1_rc_shift1 (Ptf1a(var.2)_rc)
; oligos_8nt_mkv5_m43 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=19/24; ncol2=12; w=10; offset=-2; strand=R; shift=1; score=0.535277; -rmaCAGCTGtky-- ; cor=; Ncor= a 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA1100.2_shift2 (ASCL1)
; oligos_8nt_mkv5_m43 versus MA1100.2 (ASCL1); m=20/24; ncol2=10; w=9; offset=-1; strand=D; shift=2; score=0.533017; --rrCAGCTGcy--- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA1641.1_shift1 (MYF5)
; oligos_8nt_mkv5_m43 versus MA1641.1 (MYF5); m=21/24; ncol2=12; w=10; offset=-2; strand=D; shift=1; score=0.529773; -gvaCAGCTGtbc-- ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0

MA0048.2_shift2 (NHLH1)
; oligos_8nt_mkv5_m43 versus MA0048.2 (NHLH1); m=22/24; ncol2=10; w=9; offset=-1; strand=D; shift=2; score=0.523947; --cGCAGCTGCk--- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0

MA1629.1_shift0 (Zic2)
; oligos_8nt_mkv5_m43 versus MA1629.1 (Zic2); m=23/24; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.521257; mkCaCAGCAGGrrg- ; cor=; Ncor= a 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0 0 c 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0 0 g 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0 0 t 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0 0

MA0667.1_rc_shift2 (MYF6_rc)
; oligos_8nt_mkv5_m43 versus MA0667.1_rc (MYF6_rc); m=24/24; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.509199; --RACAGyTGTT--- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 c 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 g 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 t 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m5_shift2 ; 28 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m5_shift2 (oligos_8nt_mkv5_m5oligos_8nt_mkv5_m5)
; oligos_8nt_mkv5_m5 (oligos_8nt_mkv5_m5oligos_8nt_mkv5_m5); m=0 (reference); ncol1=16; shift=2; ncol=19; --ccsCCCCGCCCCCGcs- ; Alignment reference a 0 0 21 24 9 0 4 3 2 5 1 3 2 9 6 17 13 17 0 c 0 0 124 115 58 195 186 195 202 21 202 194 182 171 171 31 115 105 0 g 0 0 43 50 122 11 19 10 4 173 5 12 21 22 25 147 49 63 0 t 0 0 22 21 21 4 1 2 2 11 2 1 5 8 8 15 33 25 0

MA0685.1_shift1 (SP4)
; oligos_8nt_mkv5_m5 versus MA0685.1 (SP4); m=1/27; ncol2=17; w=16; offset=-1; strand=D; shift=1; score=0.687914; -ywrGCCACGCCCmCtyy- ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 967.0 0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 1180.0 0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 556.0 0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0 1509.0 0

MA1513.1_shift4 (KLF15)
; oligos_8nt_mkv5_m5 versus MA1513.1 (KLF15); m=2/27; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.652938; ----scCCCGCCCcs---- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0 0

MA0746.2_shift3 (SP3)
; oligos_8nt_mkv5_m5 versus MA0746.2 (SP3); m=3/27; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.652041; ---srCCACGCCCmCy--- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0 0 0

MA1653.1_shift3 (ZNF148)
; oligos_8nt_mkv5_m5 versus MA1653.1 (ZNF148); m=4/27; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.648283; ---ysCCCCTCCCcc---- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0 0 0

MA0753.2_shift2 (ZNF740)
; oligos_8nt_mkv5_m5 versus MA0753.2 (ZNF740); m=5/27; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.635351; --cyrCCCCCCCCAc---- ; cor=; Ncor= a 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 0 0 0 c 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 0 0 0 g 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 0 0 0 t 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0 0 0 0

MA0516.2_shift0 (SP2)
; oligos_8nt_mkv5_m5 versus MA0516.2 (SP2); m=6/27; ncol2=17; w=15; offset=-2; strand=D; shift=0; score=0.635103; mTAAGyCCCGCCCmCyy-- ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 0 0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 0 0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 0 0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0 0 0

MA0740.1_shift3 (KLF14)
; oligos_8nt_mkv5_m5 versus MA0740.1 (KLF14); m=7/27; ncol2=14; w=14; offset=1; strand=D; shift=3; score=0.626951; ---krcCACGCCCmYyt-- ; cor=; Ncor= a 0 0 0 430.0 1205.0 526.0 0.0 1708.0 2.0 69.0 0.0 0.0 0.0 716.0 32.0 280.0 649.0 0 0 c 0 0 0 215.0 73.0 1360.0 1599.0 136.0 1596.0 36.0 1602.0 1604.0 1609.0 961.0 1463.0 594.0 741.0 0 0 g 0 0 0 966.0 2280.0 96.0 10.0 58.0 0.0 2939.0 3.0 3.0 4.0 1.0 15.0 89.0 314.0 0 0 t 0 0 0 693.0 71.0 404.0 248.0 5.0 2.0 31.0 0.0 6.0 65.0 31.0 559.0 1041.0 1670.0 0 0

MA0079.4_shift1 (SP1)
; oligos_8nt_mkv5_m5 versus MA0079.4 (SP1); m=8/27; ncol2=15; w=14; offset=-1; strand=D; shift=1; score=0.612981; -ywrRCCACGCCCmCh--- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0 0 0

MA1564.1_shift4 (SP9)
; oligos_8nt_mkv5_m5 versus MA1564.1 (SP9); m=9/27; ncol2=12; w=12; offset=2; strand=D; shift=4; score=0.611755; ----rcCmCGCCCmcy--- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0 0 0

MA0039.4_shift3 (KLF4)
; oligos_8nt_mkv5_m5 versus MA0039.4 (KLF4); m=10/27; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.608201; ---ssCCCCACCChs---- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0 0 0

MA0162.4_shift5 (EGR1)
; oligos_8nt_mkv5_m5 versus MA0162.4 (EGR1); m=11/27; ncol2=14; w=13; offset=3; strand=D; shift=5; score=0.60216; -----ccmCGCCCACgCms ; cor=; Ncor= a 0 0 0 0 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 3809.0 c 0 0 0 0 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 13686.0 g 0 0 0 0 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 7852.0 t 0 0 0 0 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0 5251.0

MA0741.1_shift4 (KLF16)
; oligos_8nt_mkv5_m5 versus MA0741.1 (KLF16); m=12/27; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.599744; ----gmCMCgCCCMC---- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0 0

MA0599.1_shift4 (KLF5)
; oligos_8nt_mkv5_m5 versus MA0599.1 (KLF5); m=13/27; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.570753; ----gCCMCrCCCh----- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0 0

MA0747.1_shift4 (SP8)
; oligos_8nt_mkv5_m5 versus MA0747.1 (SP8); m=14/27; ncol2=12; w=12; offset=2; strand=D; shift=4; score=0.569259; ----rmCACgCCCmCy--- ; cor=; Ncor= a 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 0 0 c 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 0 0 g 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 0 0 t 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0 0 0

MA1515.1_shift3 (KLF2)
; oligos_8nt_mkv5_m5 versus MA1515.1 (KLF2); m=15/27; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.565267; ---srCCmCrCCCw----- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0 0 0

MA1522.1_shift3 (MAZ)
; oligos_8nt_mkv5_m5 versus MA1522.1 (MAZ); m=16/27; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.559712; ---ssCCCCTCCcc----- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0 0 0

MA1512.1_shift4 (KLF11)
; oligos_8nt_mkv5_m5 versus MA1512.1 (KLF11); m=17/27; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.558424; ----gcCACGCCCmC---- ; cor=; Ncor= a 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 0 c 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 0 g 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 0 t 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0 0

MA1627.1_shift5 (Wt1)
; oligos_8nt_mkv5_m5 versus MA1627.1 (Wt1); m=18/27; ncol2=14; w=13; offset=3; strand=D; shift=5; score=0.553653; -----cycCTCCCCCACmc ; cor=; Ncor= a 0 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 1675.0 520.0 c 0 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 1350.0 2023.0 g 0 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 928.0 1038.0 t 0 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0 738.0 1110.0

MA1517.1_shift3 (KLF6)
; oligos_8nt_mkv5_m5 versus MA1517.1 (KLF6); m=19/27; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.524155; ---srcCACRCCCm----- ; cor=; Ncor= a 0 0 0 443.0 1035.0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 0 0 c 0 0 0 624.0 490.0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 0 0 g 0 0 0 626.0 1157.0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 0 0 t 0 0 0 499.0 136.0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0 0 0

MA0732.1_shift5 (EGR3)
; oligos_8nt_mkv5_m5 versus MA0732.1 (EGR3); m=20/27; ncol2=15; w=13; offset=3; strand=D; shift=5; score=0.522468; -----yhmCGCCCMCGCAy ; cor=; Ncor= a 0 0 0 0 0 337.0 444.0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 406.0 c 0 0 0 0 0 645.0 485.0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 600.0 g 0 0 0 0 0 278.0 191.0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 110.0 t 0 0 0 0 0 470.0 540.0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0 549.0

MA1516.1_shift3 (KLF3)
; oligos_8nt_mkv5_m5 versus MA1516.1 (KLF3); m=21/27; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.517506; ---grCCrCGCCCw----- ; cor=; Ncor= a 0 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 0 0 0 c 0 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 0 0 0 g 0 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 0 0 0 t 0 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0 0 0 0

MA1511.1_shift4 (KLF10)
; oligos_8nt_mkv5_m5 versus MA1511.1 (KLF10); m=22/27; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.512532; ----gmCACrCCCmy---- ; cor=; Ncor= a 0 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 0 0 c 0 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 0 0 g 0 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 0 0 t 0 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0 0 0

MA0472.2_shift7 (EGR2)
; oligos_8nt_mkv5_m5 versus MA0472.2 (EGR2); m=23/27; ncol2=11; w=11; offset=5; strand=D; shift=7; score=0.504155; -------mCGCCCACGCa- ; cor=; Ncor= a 0 0 0 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 c 0 0 0 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 g 0 0 0 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 t 0 0 0 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0

MA1630.1_rc_shift7 (Znf281_rc)
; oligos_8nt_mkv5_m5 versus MA1630.1_rc (Znf281_rc); m=24/27; ncol2=11; w=11; offset=5; strand=R; shift=7; score=0.492662; -------CcTCCCCCAcc- ; cor=; Ncor= a 0 0 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 0 c 0 0 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 0 g 0 0 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 0 t 0 0 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0 0

MA0733.1_shift5 (EGR4)
; oligos_8nt_mkv5_m5 versus MA0733.1 (EGR4); m=25/27; ncol2=16; w=13; offset=3; strand=D; shift=5; score=0.481283; -----yymCGCCCACGCAh ; cor=; Ncor= a 0 0 0 0 0 1167.0 1143.0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 1721.0 c 0 0 0 0 0 1459.0 1664.0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 1399.0 g 0 0 0 0 0 1004.0 527.0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 409.0 t 0 0 0 0 0 1953.0 2131.0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0 1778.0

MA1102.2_rc_shift7 (CTCFL_rc)
; oligos_8nt_mkv5_m5 versus MA1102.2_rc (CTCFL_rc); m=26/27; ncol2=12; w=11; offset=5; strand=R; shift=7; score=0.477659; -------scGCCCCCTGsy ; cor=; Ncor= a 0 0 0 0 0 0 0 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 c 0 0 0 0 0 0 0 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 g 0 0 0 0 0 0 0 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 t 0 0 0 0 0 0 0 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0

MA1578.1_shift7 (VEZF1)
; oligos_8nt_mkv5_m5 versus MA1578.1 (VEZF1); m=27/27; ncol2=10; w=10; offset=5; strand=D; shift=7; score= 0.4434; -------CCCCCCmytw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m41_shift4 ; 39 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m41_shift4 (oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41)
; oligos_6nt_mkv3_m41 (oligos_6nt_mkv3_m41oligos_6nt_mkv3_m41); m=0 (reference); ncol1=11; shift=4; ncol=15; ----twTAAATAGmc ; Alignment reference a 0 0 0 0 49 85 28 239 226 230 10 236 21 69 61 c 0 0 0 0 49 56 11 3 12 9 11 2 14 74 78 g 0 0 0 0 46 49 16 6 11 7 3 11 195 57 58 t 0 0 0 0 112 66 201 8 7 10 232 7 26 56 59

MA1463.1_rc_shift4 (ARGFX_rc)
; oligos_6nt_mkv3_m41 versus MA1463.1_rc (ARGFX_rc); m=1/38; ncol2=10; w=10; offset=0; strand=R; shift=4; score=0.686815; ----tyTAATTAgm- ; cor=; Ncor= a 0 0 0 0 3158.0 900.0 1048.0 16589.0 16589.0 0.0 4.0 16589.0 4423.0 6479.0 0 c 0 0 0 0 2351.0 6249.0 1492.0 0.0 0.0 0.0 0.0 96.0 1748.0 4467.0 0 g 0 0 0 0 4098.0 563.0 499.0 44.0 0.0 0.0 46.0 1130.0 16589.0 1750.0 0 t 0 0 0 0 6983.0 10340.0 16589.0 0.0 0.0 16589.0 16589.0 270.0 2558.0 3893.0 0

MA0773.1_shift2 (MEF2D)
; oligos_6nt_mkv3_m41 versus MA0773.1 (MEF2D); m=2/38; ncol2=12; w=10; offset=-2; strand=D; shift=2; score=0.673613; --dCTAwAAATAGm- ; cor=; Ncor= a 0 0 2120.0 28.0 3.0 5803.0 2782.0 5803.0 5803.0 5803.0 0.0 5803.0 339.0 3206.0 0 c 0 0 109.0 5803.0 22.0 8.0 0.0 4.0 0.0 2.0 0.0 0.0 17.0 2598.0 0 g 0 0 1933.0 0.0 0.0 2.0 2.0 0.0 2.0 1.0 0.0 4.0 5803.0 70.0 0 t 0 0 1642.0 53.0 5803.0 6.0 3021.0 778.0 217.0 69.0 5803.0 0.0 5.0 585.0 0

MA0660.1_shift2 (MEF2B)
; oligos_6nt_mkv3_m41 versus MA0660.1 (MEF2B); m=3/38; ncol2=12; w=10; offset=-2; strand=D; shift=2; score=0.669785; --rCTAwAAATAGm- ; cor=; Ncor= a 0 0 1385.0 18.0 0.0 3150.0 1495.0 3150.0 3150.0 3150.0 0.0 3150.0 98.0 1013.0 0 c 0 0 72.0 3150.0 25.0 0.0 2.0 0.0 3.0 0.0 0.0 3.0 19.0 2138.0 0 g 0 0 1766.0 0.0 0.0 0.0 0.0 12.0 2.0 0.0 0.0 2.0 3150.0 99.0 0 t 0 0 505.0 12.0 3150.0 15.0 1655.0 710.0 143.0 45.0 3150.0 3.0 3.0 506.0 0

MA0886.1_shift4 (EMX2)
; oligos_6nt_mkv3_m41 versus MA0886.1 (EMX2); m=4/38; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.649067; ----rsTAATTAgs- ; cor=; Ncor= a 0 0 0 0 10479.0 5704.0 834.0 37262.0 37262.0 0.0 0.0 37262.0 9139.0 5970.0 0 c 0 0 0 0 8412.0 13337.0 7761.0 4938.0 0.0 0.0 0.0 0.0 7124.0 13054.0 0 g 0 0 0 0 12802.0 10582.0 0.0 678.0 0.0 0.0 4025.0 0.0 17672.0 10195.0 0 t 0 0 0 0 5569.0 7639.0 29501.0 1236.0 0.0 37262.0 37262.0 0.0 3328.0 8043.0 0

MA0658.1_shift4 (LHX6)
; oligos_6nt_mkv3_m41 versus MA0658.1 (LHX6); m=5/38; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.641376; ----rcTAATTAry- ; cor=; Ncor= a 0 0 0 0 1857.0 529.0 0.0 4438.0 4438.0 0.0 0.0 4438.0 1668.0 548.0 0 c 0 0 0 0 769.0 3015.0 253.0 90.0 14.0 98.0 766.0 0.0 637.0 1654.0 0 g 0 0 0 0 1548.0 791.0 28.0 487.0 0.0 15.0 108.0 243.0 2769.0 728.0 0 t 0 0 0 0 264.0 1422.0 4438.0 0.0 0.0 4438.0 4438.0 2.0 194.0 1507.0 0

MA0628.1_shift4 (POU6F1)
; oligos_6nt_mkv3_m41 versus MA0628.1 (POU6F1); m=6/38; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.637135; ----ayTAATTArt- ; cor=; Ncor= a 0 0 0 0 507.0 151.0 32.0 905.0 938.0 14.0 18.0 950.0 353.0 89.0 0 c 0 0 0 0 193.0 351.0 10.0 70.0 34.0 14.0 8.0 8.0 145.0 211.0 0 g 0 0 0 0 211.0 145.0 8.0 8.0 14.0 34.0 70.0 10.0 351.0 193.0 0 t 0 0 0 0 89.0 353.0 950.0 18.0 14.0 938.0 905.0 32.0 151.0 507.0 0

MA0621.1_shift3 (mix-a)
; oligos_6nt_mkv3_m41 versus MA0621.1 (mix-a); m=7/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.613248; ---artTAATTAgk- ; cor=; Ncor= a 0 0 0 312.0 345.0 130.0 0.0 1000.0 1000.0 0.0 0.0 938.0 228.0 205.0 0 c 0 0 0 229.0 150.0 146.0 0.0 0.0 0.0 0.0 0.0 21.0 100.0 205.0 0 g 0 0 0 229.0 261.0 46.0 0.0 0.0 0.0 0.0 0.0 21.0 488.0 290.0 0 t 0 0 0 229.0 244.0 679.0 1000.0 0.0 0.0 1000.0 1000.0 21.0 184.0 301.0 0

MA0497.1_shift0 (MEF2C)
; oligos_6nt_mkv3_m41 versus MA0497.1 (MEF2C); m=8/38; ncol2=15; w=11; offset=-4; strand=D; shift=0; score=0.61324; rdkcyAAAAATAGmw ; cor=; Ncor= a 705.0 733.0 431.0 382.0 0.0 1616.0 1706.0 2107.0 2131.0 2135.0 56.0 2177.0 389.0 975.0 1009.0 c 321.0 151.0 196.0 1412.0 985.0 256.0 32.0 0.0 0.0 0.0 62.0 0.0 120.0 836.0 450.0 g 676.0 573.0 822.0 78.0 0.0 74.0 241.0 87.0 2.0 4.0 0.0 32.0 1671.0 148.0 126.0 t 507.0 752.0 760.0 337.0 1224.0 263.0 230.0 15.0 76.0 70.0 2091.0 0.0 29.0 250.0 624.0

MA1606.1_shift3 (Foxf1)
; oligos_6nt_mkv3_m41 versus MA1606.1 (Foxf1); m=9/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.608106; ---awrTAAACAaa- ; cor=; Ncor= a 0 0 0 23159.0 17275.0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 18673.0 20323.0 0 c 0 0 0 10753.0 7560.0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 12643.0 11715.0 0 g 0 0 0 12462.0 8287.0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 14294.0 12844.0 0 t 0 0 0 13166.0 26418.0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 13930.0 14658.0 0

MA0052.4_shift1 (MEF2A)
; oligos_6nt_mkv3_m41 versus MA0052.4 (MEF2A); m=10/38; ncol2=15; w=11; offset=-3; strand=D; shift=1; score=0.607581; -wkcTAAAAATAGaw ; cor=; Ncor= a 0 5075.0 4033.0 1984.0 627.0 12437.0 13132.0 14680.0 14453.0 14956.0 441.0 15582.0 2566.0 7709.0 6171.0 c 0 2119.0 1960.0 10919.0 2974.0 1013.0 253.0 141.0 231.0 173.0 349.0 50.0 1060.0 4039.0 3523.0 g 0 3651.0 4493.0 1007.0 236.0 1066.0 610.0 506.0 241.0 202.0 215.0 422.0 11104.0 1605.0 1810.0 t 0 5317.0 5676.0 2252.0 12325.0 1646.0 2167.0 835.0 1237.0 831.0 15157.0 108.0 1432.0 2809.0 4658.0

MA0047.3_shift3 (FOXA2)
; oligos_6nt_mkv3_m41 versus MA0047.3 (FOXA2); m=11/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.600902; ---awGTAAACAww- ; cor=; Ncor= a 0 0 0 112241.0 93740.0 18770.0 3737.0 243805.0 223061.0 248214.0 2411.0 246665.0 76950.0 85410.0 0 c 0 0 0 34080.0 12432.0 2928.0 2037.0 9424.0 22429.0 3329.0 196969.0 3086.0 50576.0 53633.0 0 g 0 0 0 63806.0 38538.0 236311.0 1890.0 2641.0 6484.0 2805.0 3603.0 2984.0 50527.0 56632.0 0 t 0 0 0 52026.0 117443.0 4144.0 254489.0 6283.0 10179.0 7805.0 59170.0 9418.0 84100.0 66478.0 0

MA1683.1_shift3 (FOXA3)
; oligos_6nt_mkv3_m41 versus MA1683.1 (FOXA3); m=12/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.599094; ---rwGTAAACAww- ; cor=; Ncor= a 0 0 0 18375.0 16693.0 4481.0 758.0 45178.0 43099.0 46046.0 951.0 45552.0 13442.0 14902.0 0 c 0 0 0 8520.0 3627.0 1464.0 903.0 1980.0 3883.0 973.0 39509.0 933.0 9975.0 9884.0 0 g 0 0 0 12744.0 9296.0 40396.0 690.0 636.0 977.0 934.0 1205.0 614.0 11451.0 11103.0 0 t 0 0 0 9298.0 19321.0 2596.0 46586.0 1143.0 978.0 984.0 7272.0 1838.0 14069.0 13048.0 0

MA0481.3_shift3 (FOXP1)
; oligos_6nt_mkv3_m41 versus MA0481.3 (FOXP1); m=13/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.595313; ---awGTAAACAww- ; cor=; Ncor= a 0 0 0 26982.0 26879.0 10463.0 1209.0 69603.0 65236.0 70030.0 1336.0 68456.0 20210.0 25974.0 0 c 0 0 0 13908.0 6209.0 1573.0 727.0 2095.0 5067.0 1487.0 61094.0 1904.0 17235.0 14312.0 0 g 0 0 0 16635.0 14136.0 59571.0 920.0 1073.0 1830.0 1132.0 1493.0 749.0 15846.0 12809.0 0 t 0 0 0 17193.0 27494.0 3111.0 71862.0 1947.0 2585.0 2069.0 10795.0 3609.0 21427.0 21623.0 0

MA1103.2_shift3 (FOXK2)
; oligos_6nt_mkv3_m41 versus MA1103.2 (FOXK2); m=14/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.593312; ---awGTAAACAar- ; cor=; Ncor= a 0 0 0 6548.0 4861.0 2697.0 360.0 15913.0 14387.0 15593.0 499.0 15709.0 4836.0 4855.0 0 c 0 0 0 2872.0 2198.0 551.0 210.0 277.0 1291.0 330.0 14282.0 295.0 3877.0 3788.0 0 g 0 0 0 3471.0 3423.0 12737.0 327.0 148.0 436.0 391.0 426.0 170.0 3950.0 5012.0 0 t 0 0 0 3788.0 6197.0 694.0 15782.0 341.0 565.0 365.0 1472.0 505.0 4016.0 3024.0 0

MA0593.1_shift3 (FOXP2)
; oligos_6nt_mkv3_m41 versus MA0593.1 (FOXP2); m=15/38; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.584065; ---awGTAAACAra- ; cor=; Ncor= a 0 0 0 330.0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 332.0 0 c 0 0 0 113.0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 124.0 0 g 0 0 0 190.0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 184.0 0 t 0 0 0 133.0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 126.0 0

MA0618.1_shift5 (LBX1)
; oligos_6nt_mkv3_m41 versus MA0618.1 (LBX1); m=16/38; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.564949; -----tTAAYTRG-- ; cor=; Ncor= a 0 0 0 0 0 217.0 0.0 999.0 999.0 0.0 143.0 731.0 29.0 0 0 c 0 0 0 0 0 131.0 49.0 0.0 0.0 262.0 0.0 0.0 114.0 0 0 g 0 0 0 0 0 174.0 0.0 0.0 0.0 0.0 119.0 268.0 799.0 0 0 t 0 0 0 0 0 478.0 951.0 0.0 0.0 738.0 738.0 0.0 57.0 0 0

MA0846.1_shift2 (FOXC2)
; oligos_6nt_mkv3_m41 versus MA0846.1 (FOXC2); m=17/38; ncol2=12; w=10; offset=-2; strand=D; shift=2; score=0.545705; --wAwrTAAAYAww- ; cor=; Ncor= a 0 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 10995.0 0 c 0 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 3080.0 0 g 0 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 2649.0 0 t 0 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 9461.0 0

MA0726.1_rc_shift5 (VSX2_rc)
; oligos_6nt_mkv3_m41 versus MA0726.1_rc (VSX2_rc); m=18/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.543993; -----cTAATTAr-- ; cor=; Ncor= a 0 0 0 0 0 3387.0 1014.0 13809.0 13809.0 63.0 402.0 13809.0 4255.0 0 0 c 0 0 0 0 0 4288.0 2109.0 447.0 92.0 123.0 343.0 363.0 445.0 0 0 g 0 0 0 0 0 3243.0 321.0 567.0 186.0 124.0 397.0 2725.0 9554.0 0 0 t 0 0 0 0 0 2891.0 13809.0 626.0 118.0 13809.0 13809.0 1080.0 427.0 0 0

MA0845.1_shift2 (FOXB1)
; oligos_6nt_mkv3_m41 versus MA0845.1 (FOXB1); m=19/38; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.541991; --wAwGTMAAyAt-- ; cor=; Ncor= a 0 0 2393.0 5343.0 1983.0 1159.0 180.0 4891.0 6841.0 6841.0 28.0 6841.0 1704.0 0 0 c 0 0 272.0 263.0 218.0 54.0 240.0 1950.0 213.0 47.0 2252.0 0.0 573.0 0 0 g 0 0 190.0 1498.0 409.0 6841.0 113.0 75.0 0.0 47.0 104.0 157.0 556.0 0 0 t 0 0 4448.0 561.0 4858.0 124.0 6841.0 73.0 381.0 216.0 4589.0 147.0 4008.0 0 0

MA0075.3_rc_shift5 (PRRX2_rc)
; oligos_6nt_mkv3_m41 versus MA0075.3_rc (PRRX2_rc); m=20/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.540665; -----yTAATTrg-- ; cor=; Ncor= a 0 0 0 0 0 1295.0 0.0 6720.0 6720.0 0.0 0.0 4711.0 1933.0 0 0 c 0 0 0 0 0 1862.0 399.0 0.0 0.0 0.0 3.0 131.0 1613.0 0 0 g 0 0 0 0 0 1271.0 1.0 0.0 0.0 0.0 29.0 2008.0 6720.0 0 0 t 0 0 0 0 0 2291.0 6720.0 0.0 0.0 6720.0 6720.0 122.0 778.0 0 0

MA0701.2_rc_shift5 (LHX9_rc)
; oligos_6nt_mkv3_m41 versus MA0701.2_rc (LHX9_rc); m=21/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.535162; -----yTAATTrG-- ; cor=; Ncor= a 0 0 0 0 0 856.0 0.0 6075.0 6075.0 0.0 20.0 3983.0 1219.0 0 0 c 0 0 0 0 0 1946.0 305.0 170.0 0.0 0.0 0.0 0.0 1056.0 0 0 g 0 0 0 0 0 1013.0 0.0 0.0 0.0 0.0 505.0 2093.0 6075.0 0 0 t 0 0 0 0 0 2261.0 6075.0 0.0 0.0 6075.0 6075.0 0.0 390.0 0 0

MA0032.2_shift2 (FOXC1)
; oligos_6nt_mkv3_m41 versus MA0032.2 (FOXC1); m=22/38; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.534116; --wAwRTMAAyAw-- ; cor=; Ncor= a 0 0 6452.0 14324.0 7893.0 4858.0 2496.0 13117.0 18489.0 18489.0 122.0 18489.0 6702.0 0 0 c 0 0 772.0 728.0 2008.0 336.0 1652.0 5372.0 108.0 56.0 8782.0 27.0 1558.0 0 0 g 0 0 304.0 4165.0 2422.0 13631.0 390.0 21.0 0.0 141.0 165.0 433.0 1107.0 0 0 t 0 0 12038.0 1386.0 10596.0 51.0 18489.0 45.0 57.0 112.0 9708.0 184.0 11787.0 0 0

MA0912.2_rc_shift5 (HOXD3_rc)
; oligos_6nt_mkv3_m41 versus MA0912.2_rc (HOXD3_rc); m=23/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.532003; -----gTAATTAG-- ; cor=; Ncor= a 0 0 0 0 0 1674.0 0.0 14562.0 14562.0 0.0 0.0 14562.0 2947.0 0 0 c 0 0 0 0 0 3187.0 2198.0 4453.0 0.0 0.0 0.0 0.0 827.0 0 0 g 0 0 0 0 0 8987.0 0.0 0.0 0.0 0.0 742.0 94.0 11615.0 0 0 t 0 0 0 0 0 714.0 14562.0 0.0 0.0 14562.0 14562.0 0.0 276.0 0 0

MA0612.2_shift5 (EMX1)
; oligos_6nt_mkv3_m41 versus MA0612.2 (EMX1); m=24/38; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.529147; -----sTAATTAs-- ; cor=; Ncor= a 0 0 0 0 0 1276.0 19.0 9544.0 9544.0 0.0 0.0 9544.0 1333.0 0 0 c 0 0 0 0 0 3425.0 2263.0 1235.0 0.0 0.0 0.0 0.0 2633.0 0 0 g 0 0 0 0 0 3066.0 0.0 0.0 0.0 0.0 933.0 0.0 4516.0 0 0 t 0 0 0 0 0 1777.0 7281.0 0.0 0.0 9544.0 9544.0 0.0 1062.0 0 0

MA0725.1_rc_shift5 (VSX1_rc)
; oligos_6nt_mkv3_m41 versus MA0725.1_rc (VSX1_rc); m=25/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.525712; -----vTAATTAr-- ; cor=; Ncor= a 0 0 0 0 0 3732.0 1372.0 13572.0 13572.0 90.0 554.0 13572.0 5119.0 0 0 c 0 0 0 0 0 3658.0 3337.0 984.0 103.0 172.0 553.0 572.0 561.0 0 0 g 0 0 0 0 0 3555.0 516.0 761.0 199.0 154.0 626.0 3131.0 8453.0 0 0 t 0 0 0 0 0 2626.0 13572.0 898.0 172.0 13572.0 13572.0 1836.0 756.0 0 0

MA0033.2_shift5 (FOXL1)
; oligos_6nt_mkv3_m41 versus MA0033.2 (FOXL1); m=26/38; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.521264; -----rTAAACA--- ; cor=; Ncor= a 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 c 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 g 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 t 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0

MA0108.2_shift3 (TBP)
; oligos_6nt_mkv3_m41 versus MA0108.2 (TBP); m=27/38; ncol2=15; w=11; offset=-1; strand=D; shift=3; score=0.517077; ---sTATAWAwrsss ; cor=; Ncor= a 0 0 0 61.0 16.0 352.0 3.0 354.0 268.0 360.0 222.0 155.0 56.0 83.0 82.0 c 0 0 0 145.0 46.0 0.0 10.0 0.0 0.0 3.0 2.0 44.0 135.0 147.0 127.0 g 0 0 0 152.0 18.0 2.0 2.0 5.0 0.0 20.0 44.0 157.0 150.0 128.0 128.0 t 0 0 0 31.0 309.0 35.0 374.0 30.0 121.0 6.0 121.0 33.0 48.0 31.0 52.0

MA1519.1_rc_shift5 (LHX5_rc)
; oligos_6nt_mkv3_m41 versus MA1519.1_rc (LHX5_rc); m=28/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.516558; -----tTAATTRs-- ; cor=; Ncor= a 0 0 0 0 0 1333.0 0.0 7142.0 7142.0 0.0 0.0 5049.0 1215.0 0 0 c 0 0 0 0 0 1483.0 160.0 28.0 0.0 0.0 0.0 0.0 3721.0 0 0 g 0 0 0 0 0 1576.0 0.0 144.0 0.0 0.0 187.0 2093.0 3420.0 0 0 t 0 0 0 0 0 2749.0 7142.0 0.0 0.0 7142.0 7142.0 0.0 394.0 0 0

MA0702.2_rc_shift5 (LMX1A_rc)
; oligos_6nt_mkv3_m41 versus MA0702.2_rc (LMX1A_rc); m=29/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.51471; -----kTAATTAr-- ; cor=; Ncor= a 0 0 0 0 0 827.0 0.0 7355.0 7355.0 0.0 0.0 7355.0 5133.0 0 0 c 0 0 0 0 0 1158.0 501.0 0.0 0.0 0.0 0.0 19.0 305.0 0 0 g 0 0 0 0 0 2558.0 102.0 0.0 50.0 9.0 0.0 31.0 2222.0 0 0 t 0 0 0 0 0 2812.0 7355.0 0.0 0.0 7355.0 7355.0 0.0 90.0 0 0

MA0068.2_rc_shift5 (PAX4_rc)
; oligos_6nt_mkv3_m41 versus MA0068.2_rc (PAX4_rc); m=30/38; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.513348; -----cTAATTag-- ; cor=; Ncor= a 0 0 0 0 0 41.0 12.0 333.0 333.0 0.0 3.0 333.0 105.0 0 0 c 0 0 0 0 0 333.0 11.0 10.0 5.0 0.0 0.0 120.0 47.0 0 0 g 0 0 0 0 0 93.0 89.0 11.0 0.0 0.0 2.0 30.0 333.0 0 0 t 0 0 0 0 0 150.0 333.0 18.0 0.0 333.0 333.0 58.0 37.0 0 0

MA0900.2_shift5 (HOXA2)
; oligos_6nt_mkv3_m41 versus MA0900.2 (HOXA2); m=31/38; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.511874; -----sTMATTAs-- ; cor=; Ncor= a 0 0 0 0 0 8880.0 0.0 39674.0 56949.0 0.0 0.0 56949.0 10641.0 0 0 c 0 0 0 0 0 19452.0 3636.0 17275.0 0.0 0.0 0.0 0.0 16330.0 0 0 g 0 0 0 0 0 22686.0 0.0 290.0 0.0 0.0 0.0 2052.0 22246.0 0 0 t 0 0 0 0 0 5931.0 56949.0 0.0 0.0 56949.0 56949.0 0.0 7731.0 0 0

MA1577.1_shift5 (TLX2)
; oligos_6nt_mkv3_m41 versus MA1577.1 (TLX2); m=32/38; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.511813; -----yyAATTAr-- ; cor=; Ncor= a 0 0 0 0 0 997.0 1435.0 7799.0 7799.0 0.0 0.0 7799.0 2184.0 0 0 c 0 0 0 0 0 2572.0 7799.0 0.0 0.0 0.0 0.0 0.0 1323.0 0 0 g 0 0 0 0 0 1851.0 1112.0 80.0 0.0 0.0 0.0 0.0 3439.0 0 0 t 0 0 0 0 0 2379.0 8156.0 0.0 0.0 7799.0 7799.0 0.0 852.0 0 0

MA0848.1_shift5 (FOXO4)
; oligos_6nt_mkv3_m41 versus MA0848.1 (FOXO4); m=33/38; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.486055; -----GTAAACA--- ; cor=; Ncor= a 0 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 c 0 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 g 0 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 t 0 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0

MA0850.1_shift5 (FOXP3)
; oligos_6nt_mkv3_m41 versus MA0850.1 (FOXP3); m=34/38; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.485925; -----rTAAACA--- ; cor=; Ncor= a 0 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 c 0 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 g 0 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 t 0 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0

MA0042.2_shift5 (FOXI1)
; oligos_6nt_mkv3_m41 versus MA0042.2 (FOXI1); m=35/38; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.480296; -----GTAAACA--- ; cor=; Ncor= a 0 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 0 0 0 c 0 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 0 0 0 g 0 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 0 0 0 t 0 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0 0 0 0

MA1607.1_shift0 (Foxl2)
; oligos_6nt_mkv3_m41 versus MA1607.1 (Foxl2); m=36/38; ncol2=14; w=10; offset=-4; strand=D; shift=0; score=0.468824; rwwaTGTAAACAwr- ; cor=; Ncor= a 6235.0 5913.0 6433.0 11158.0 2985.0 2607.0 1097.0 17227.0 17212.0 17146.0 282.0 15623.0 5229.0 5143.0 0 c 3031.0 2912.0 1576.0 2051.0 896.0 367.0 301.0 558.0 336.0 216.0 15698.0 807.0 4246.0 4329.0 0 g 4621.0 3521.0 1599.0 2107.0 1371.0 14648.0 419.0 112.0 187.0 411.0 151.0 401.0 3844.0 4529.0 0 t 4214.0 5755.0 8493.0 2785.0 12849.0 479.0 16284.0 204.0 366.0 328.0 1970.0 1270.0 4782.0 4100.0 0

MA0849.1_shift5 (FOXO6)
; oligos_6nt_mkv3_m41 versus MA0849.1 (FOXO6); m=37/38; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.462755; -----GTAAACA--- ; cor=; Ncor= a 0 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 0 0 0 c 0 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 0 0 0 g 0 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 0 0 0 t 0 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0 0 0 0

MA0847.2_shift0 (FOXD2)
; oligos_6nt_mkv3_m41 versus MA0847.2 (FOXD2); m=38/38; ncol2=13; w=9; offset=-4; strand=D; shift=0; score=0.44202; sywAwRTAAAYAw-- ; cor=; Ncor= a 1404.0 865.0 2183.0 5995.0 2482.0 2608.0 148.0 5995.0 5995.0 5995.0 0.0 5995.0 2400.0 0 0 c 1834.0 2406.0 36.0 92.0 1208.0 101.0 1005.0 658.0 209.0 0.0 5995.0 53.0 1003.0 0 0 g 2314.0 309.0 3.0 1294.0 752.0 5995.0 0.0 11.0 17.0 25.0 0.0 125.0 515.0 0 0 t 442.0 3589.0 3812.0 23.0 1553.0 6.0 5995.0 11.0 11.0 33.0 2297.0 209.0 2076.0 0 0

One-to-n matrix alignment; reference matrix: local_words_7nt_m8_shift0 ; 23 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m8_shift0 (local_words_7nt_m8local_words_7nt_m8)
; local_words_7nt_m8 (local_words_7nt_m8local_words_7nt_m8); m=0 (reference); ncol1=16; shift=0; ncol=18; srgCAGCAGCTGTgss-- ; Alignment reference a 103 174 67 41 477 16 1 518 3 1 1 4 13 24 100 81 0 0 c 190 133 69 404 20 3 550 1 5 536 3 1 19 112 165 193 0 0 g 149 140 368 77 27 532 0 1 540 11 1 548 27 334 171 157 0 0 t 111 106 49 31 29 2 2 33 5 5 548 0 494 83 117 122 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; local_words_7nt_m8 versus MA0832.1_rc (Tcf21_rc); m=1/22; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.685964; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA1485.1_shift2 (FERD3L)
; local_words_7nt_m8 versus MA1485.1 (FERD3L); m=2/22; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.683084; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA1529.1_shift0 (NHLH2)
; local_words_7nt_m8 versus MA1529.1 (NHLH2); m=3/22; ncol2=18; w=16; offset=0; strand=D; shift=0; score=0.660144; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0499.2_shift3 (MYOD1)
; local_words_7nt_m8 versus MA0499.2 (MYOD1); m=4/22; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.650534; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; local_words_7nt_m8 versus MA0500.2_rc (MYOG_rc); m=5/22; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.641653; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_7nt_m8 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=6/22; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.623375; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; local_words_7nt_m8 versus MA1641.1_rc (MYF5_rc); m=7/22; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.619901; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_7nt_m8 versus MA0521.1_rc (Tcf12_rc); m=8/22; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.597894; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1618.1_rc_shift2 (Ptf1a_rc)
; local_words_7nt_m8 versus MA1618.1_rc (Ptf1a_rc); m=9/22; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.57177; --dmaaCATCTGtkh--- ; cor=; Ncor= a 0 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 c 0 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 g 0 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 t 0 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0

MA0745.2_shift3 (SNAI2)
; local_words_7nt_m8 versus MA0745.2 (SNAI2); m=10/22; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.569121; ---aygCACCTGTmry-- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_7nt_m8 versus MA0816.1_rc (Ascl2_rc); m=11/22; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.550652; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_7nt_m8 versus MA1472.1 (BHLHA15(var.2)); m=12/22; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.539162; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_7nt_m8 versus MA0048.2_rc (NHLH1_rc); m=13/22; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.534255; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_7nt_m8 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=14/22; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.527494; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_7nt_m8 versus MA1100.2 (ASCL1); m=15/22; ncol2=10; w=10; offset=4; strand=D; shift=4; score= 0.5243; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; local_words_7nt_m8 versus MA1467.1 (ATOH1(var.2)); m=16/22; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.51477; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; local_words_7nt_m8 versus MA0665.1_rc (MSC_rc); m=17/22; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.514233; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; local_words_7nt_m8 versus MA0691.1_rc (TFAP4_rc); m=18/22; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.509708; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; local_words_7nt_m8 versus MA1648.1_rc (TCF12(var.2)_rc); m=19/22; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.498969; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; local_words_7nt_m8 versus MA0522.3_rc (TCF3_rc); m=20/22; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.49405; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA0667.1_shift4 (MYF6)
; local_words_7nt_m8 versus MA0667.1 (MYF6); m=21/22; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.482179; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; local_words_7nt_m8 versus MA0820.1 (FIGLA); m=22/22; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.448839; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m38_shift2 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m38_shift2 (oligos_7nt_mkv4_m38oligos_7nt_mkv4_m38)
; oligos_7nt_mkv4_m38 (oligos_7nt_mkv4_m38oligos_7nt_mkv4_m38); m=0 (reference); ncol1=12; shift=2; ncol=14; --ssGCGCtCGCss ; Alignment reference a 0 0 37 33 6 4 3 6 16 0 1 4 46 31 c 0 0 113 129 12 264 11 259 41 270 12 255 73 106 g 0 0 91 71 241 8 260 6 66 4 254 13 97 96 t 0 0 36 44 18 1 3 6 154 3 10 5 61 44

MA0506.1_rc_shift3 (NRF1_rc)
; oligos_7nt_mkv4_m38 versus MA0506.1_rc (NRF1_rc); m=1/3; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.684957; ---yGCGCAkGCGC ; cor=; Ncor= a 0 0 0 0.0 0.0 0.0 286.0 0.0 3693.0 313.0 140.0 0.0 0.0 0.0 c 0 0 0 1575.0 0.0 4275.0 0.0 4624.0 528.0 935.0 468.0 4239.0 0.0 3647.0 g 0 0 0 804.0 4550.0 349.0 4338.0 0.0 403.0 1862.0 4016.0 189.0 4001.0 375.0 t 0 0 0 2245.0 74.0 0.0 0.0 0.0 0.0 1514.0 0.0 196.0 623.0 602.0

MA0632.2_shift4 (TCFL5)
; oligos_7nt_mkv4_m38 versus MA0632.2 (TCFL5); m=2/3; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.587505; ----kCrCGCGCmc ; cor=; Ncor= a 0 0 0 0 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 72543.0 10588.0 c 0 0 0 0 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 44394.0 47538.0 g 0 0 0 0 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 19096.0 5747.0 t 0 0 0 0 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 25921.0 8670.0

MA1650.1_shift0 (ZBTB14)
; oligos_7nt_mkv4_m38 versus MA1650.1 (ZBTB14); m=3/3; ncol2=12; w=10; offset=-2; strand=D; shift=0; score=0.514381; ssCCGCGCACss-- ; cor=; Ncor= a 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 0 0 c 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 0 0 g 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 0 0 t 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m21_shift0 ; 30 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m21_shift0 (oligos_6nt_mkv3_m21oligos_6nt_mkv3_m21)
; oligos_6nt_mkv3_m21 (oligos_6nt_mkv3_m21oligos_6nt_mkv3_m21); m=0 (reference); ncol1=17; shift=0; ncol=18; srgmaGCAGCTGTctss- ; Alignment reference a 246 329 164 409 671 119 4 1140 8 4 0 1 27 46 229 158 223 0 c 357 287 199 326 134 100 1148 3 9 1132 2 2 74 764 275 393 362 0 g 322 322 656 256 193 891 2 2 1130 9 0 1150 41 183 200 350 299 0 t 229 216 135 163 156 44 0 9 7 9 1152 1 1012 161 450 253 270 0

MA1529.1_rc_shift0 (NHLH2_rc)
; oligos_6nt_mkv3_m21 versus MA1529.1_rc (NHLH2_rc); m=1/29; ncol2=18; w=17; offset=0; strand=R; shift=0; score=0.68213; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA0499.2_shift3 (MYOD1)
; oligos_6nt_mkv3_m21 versus MA0499.2 (MYOD1); m=2/29; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.666451; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; oligos_6nt_mkv3_m21 versus MA0832.1_rc (Tcf21_rc); m=3/29; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.660207; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA1485.1_shift2 (FERD3L)
; oligos_6nt_mkv3_m21 versus MA1485.1 (FERD3L); m=4/29; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.647926; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0500.2_shift3 (MYOG)
; oligos_6nt_mkv3_m21 versus MA0500.2 (MYOG); m=5/29; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.640961; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; oligos_6nt_mkv3_m21 versus MA1641.1_rc (MYF5_rc); m=6/29; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.632452; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; oligos_6nt_mkv3_m21 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/29; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.629688; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; oligos_6nt_mkv3_m21 versus MA0521.1_rc (Tcf12_rc); m=8/29; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.607316; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1621.1_shift2 (Rbpjl)
; oligos_6nt_mkv3_m21 versus MA1621.1 (Rbpjl); m=9/29; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.604525; --svmaCACCTGtsyc-- ; cor=; Ncor= a 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 c 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 g 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 t 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0

MA0745.2_shift3 (SNAI2)
; oligos_6nt_mkv3_m21 versus MA0745.2 (SNAI2); m=10/29; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.591867; ---aygCACCTGTmry-- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0

MA1618.1_rc_shift2 (Ptf1a_rc)
; oligos_6nt_mkv3_m21 versus MA1618.1_rc (Ptf1a_rc); m=11/29; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.573517; --dmaaCATCTGtkh--- ; cor=; Ncor= a 0 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 c 0 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 g 0 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 t 0 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; oligos_6nt_mkv3_m21 versus MA1631.1_rc (ASCL1(var.2)_rc); m=12/29; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.554034; --gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0

MA0830.2_shift3 (TCF4)
; oligos_6nt_mkv3_m21 versus MA0830.2 (TCF4); m=13/29; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.545502; ---cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; oligos_6nt_mkv3_m21 versus MA1467.1 (ATOH1(var.2)); m=14/29; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.533458; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; oligos_6nt_mkv3_m21 versus MA1472.1 (BHLHA15(var.2)); m=15/29; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.530654; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; oligos_6nt_mkv3_m21 versus MA0816.1_rc (Ascl2_rc); m=16/29; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.529795; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA1620.1_rc_shift3 (Ptf1a(var.3)_rc)
; oligos_6nt_mkv3_m21 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=17/29; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.52677; ---rmaCAGGTGtky--- ; cor=; Ncor= a 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 0 c 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 0 g 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 0 t 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; oligos_6nt_mkv3_m21 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=18/29; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.521607; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1100.2_shift4 (ASCL1)
; oligos_6nt_mkv3_m21 versus MA1100.2 (ASCL1); m=19/29; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.520106; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; oligos_6nt_mkv3_m21 versus MA0665.1_rc (MSC_rc); m=20/29; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.500584; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; oligos_6nt_mkv3_m21 versus MA0691.1_rc (TFAP4_rc); m=21/29; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.491735; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; oligos_6nt_mkv3_m21 versus MA0048.2_rc (NHLH1_rc); m=22/29; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.487082; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; oligos_6nt_mkv3_m21 versus MA1648.1_rc (TCF12(var.2)_rc); m=23/29; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.475612; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0667.1_shift4 (MYF6)
; oligos_6nt_mkv3_m21 versus MA0667.1 (MYF6); m=24/29; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.474177; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; oligos_6nt_mkv3_m21 versus MA0522.3_rc (TCF3_rc); m=25/29; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.473236; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; oligos_6nt_mkv3_m21 versus MA0820.1 (FIGLA); m=26/29; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.441408; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

MA1559.1_rc_shift4 (SNAI3_rc)
; oligos_6nt_mkv3_m21 versus MA1559.1_rc (SNAI3_rc); m=27/29; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.423611; ----trCACCTGyt---- ; cor=; Ncor= a 0 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 c 0 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 g 0 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 t 0 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0

MA1558.1_shift4 (SNAI1)
; oligos_6nt_mkv3_m21 versus MA1558.1 (SNAI1); m=28/29; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.413121; ----drCAGGTGyr---- ; cor=; Ncor= a 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 0 c 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 0 g 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 0 t 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0 0

MA0100.3_shift4 (MYB)
; oligos_6nt_mkv3_m21 versus MA0100.3 (MYB); m=29/29; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.412848; ----mbCAACTGhm---- ; cor=; Ncor= a 0 0 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 0 0 c 0 0 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 0 0 g 0 0 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 0 0 t 0 0 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_8nt_m1_shift0 ; 22 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_8nt_m1_shift0 (positions_8nt_m1positions_8nt_m1)
; positions_8nt_m1 (positions_8nt_m1positions_8nt_m1); m=0 (reference); ncol1=16; shift=0; ncol=16; srCAGCAGCTGTCasc ; Alignment reference a 124 138 30 458 25 3 501 1 1 4 1 16 15 225 75 100 c 172 132 421 21 24 529 3 12 523 1 0 37 446 121 189 176 g 143 173 62 11 474 1 1 518 4 0 528 23 38 76 163 125 t 94 90 20 43 10 0 28 2 5 528 4 457 34 111 106 132

MA0832.1_rc_shift1 (Tcf21_rc)
; positions_8nt_m1 versus MA0832.1_rc (Tcf21_rc); m=1/21; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.68179; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA0499.2_shift2 (MYOD1)
; positions_8nt_m1 versus MA0499.2 (MYOD1); m=2/21; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.674264; --cwgCACCTGTymy- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA1485.1_shift1 (FERD3L)
; positions_8nt_m1 versus MA1485.1 (FERD3L); m=3/21; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.668486; -GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0500.2_rc_shift2 (MYOG_rc)
; positions_8nt_m1 versus MA0500.2_rc (MYOG_rc); m=4/21; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.632644; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA1641.1_rc_shift2 (MYF5_rc)
; positions_8nt_m1 versus MA1641.1_rc (MYF5_rc); m=5/21; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.608623; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA0521.1_rc_shift2 (Tcf12_rc)
; positions_8nt_m1 versus MA0521.1_rc (Tcf12_rc); m=6/21; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.606764; --cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1619.1_rc_shift2 (Ptf1a(var.2)_rc)
; positions_8nt_m1 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/21; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.602961; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA0745.2_shift2 (SNAI2)
; positions_8nt_m1 versus MA0745.2 (SNAI2); m=8/21; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.579842; --aygCACCTGTmry- ; cor=; Ncor= a 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA1618.1_rc_shift1 (Ptf1a_rc)
; positions_8nt_m1 versus MA1618.1_rc (Ptf1a_rc); m=9/21; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.571138; -dmaaCATCTGtkh-- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0

MA1467.1_shift3 (ATOH1(var.2))
; positions_8nt_m1 versus MA1467.1 (ATOH1(var.2)); m=10/21; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.55453; ---AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA0816.1_shift3 (Ascl2)
; positions_8nt_m1 versus MA0816.1 (Ascl2); m=11/21; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.542325; ---arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA1472.1_shift3 (BHLHA15(var.2))
; positions_8nt_m1 versus MA1472.1 (BHLHA15(var.2)); m=12/21; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.536991; ---avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA1100.2_shift3 (ASCL1)
; positions_8nt_m1 versus MA1100.2 (ASCL1); m=13/21; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.527618; ---rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA1635.1_rc_shift3 (BHLHE22(var.2)_rc)
; positions_8nt_m1 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=14/21; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.519564; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA0665.1_rc_shift3 (MSC_rc)
; positions_8nt_m1 versus MA0665.1_rc (MSC_rc); m=15/21; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.513857; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA0691.1_rc_shift3 (TFAP4_rc)
; positions_8nt_m1 versus MA0691.1_rc (TFAP4_rc); m=16/21; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.497287; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA0048.2_rc_shift3 (NHLH1_rc)
; positions_8nt_m1 versus MA0048.2_rc (NHLH1_rc); m=17/21; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.488967; ---mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA0667.1_shift3 (MYF6)
; positions_8nt_m1 versus MA0667.1 (MYF6); m=18/21; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.486625; ---AACArCTGTY--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA0820.1_shift3 (FIGLA)
; positions_8nt_m1 versus MA0820.1 (FIGLA); m=19/21; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.445192; ---wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

MA0774.1_rc_shift7 (MEIS2_rc)
; positions_8nt_m1 versus MA0774.1_rc (MEIS2_rc); m=20/21; ncol2=8; w=8; offset=7; strand=R; shift=7; score=0.428758; -------sCTGTCAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 c 0 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 g 0 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 t 0 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0

MA0775.1_rc_shift7 (MEIS3_rc)
; positions_8nt_m1 versus MA0775.1_rc (MEIS3_rc); m=21/21; ncol2=8; w=8; offset=7; strand=R; shift=7; score=0.407226; -------scTGTCAw- ; cor=; Ncor= a 0 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 c 0 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 g 0 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 t 0 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0

One-to-n matrix alignment; reference matrix: dyads_m34_shift2 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m34_shift2 (dyads_m34dyads_m34)
; dyads_m34 (dyads_m34dyads_m34); m=0 (reference); ncol1=14; shift=2; ncol=17; --csGCCCAGCCCCss- ; Alignment reference a 0 0 43 56 6 6 3 2 177 6 2 4 5 11 50 39 0 c 0 0 95 69 11 227 226 233 47 6 222 227 216 197 64 101 0 g 0 0 49 62 209 3 5 0 4 216 9 3 6 10 76 71 0 t 0 0 50 50 11 1 3 2 9 9 4 3 10 19 47 26 0

MA1599.1_shift1 (ZNF682)
; dyads_m34 versus MA1599.1 (ZNF682); m=1/10; ncol2=16; w=14; offset=-1; strand=D; shift=1; score=0.68176; -crGGCyAAGCCCCwrt ; cor=; Ncor= a 0 205.0 304.0 110.0 103.0 100.0 48.0 953.0 999.0 6.0 13.0 5.0 7.0 66.0 367.0 324.0 192.0 c 0 423.0 234.0 85.0 42.0 795.0 597.0 72.0 31.0 7.0 999.0 1033.0 1034.0 896.0 117.0 254.0 260.0 g 0 214.0 349.0 774.0 877.0 105.0 55.0 20.0 22.0 1038.0 13.0 9.0 10.0 32.0 118.0 300.0 194.0 t 0 216.0 171.0 89.0 36.0 58.0 358.0 13.0 6.0 7.0 33.0 11.0 7.0 64.0 456.0 180.0 412.0

MA1513.1_shift4 (KLF15)
; dyads_m34 versus MA1513.1 (KLF15); m=2/10; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.660848; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0

MA0746.2_shift3 (SP3)
; dyads_m34 versus MA0746.2 (SP3); m=3/10; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.660294; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0

MA0079.4_shift1 (SP1)
; dyads_m34 versus MA0079.4 (SP1); m=4/10; ncol2=15; w=14; offset=-1; strand=D; shift=1; score=0.653347; -ywrRCCACGCCCmCh- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0

MA1653.1_shift3 (ZNF148)
; dyads_m34 versus MA1653.1 (ZNF148); m=5/10; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.602824; ---ysCCCCTCCCcc-- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0

MA0516.2_shift0 (SP2)
; dyads_m34 versus MA0516.2 (SP2); m=6/10; ncol2=17; w=14; offset=-2; strand=D; shift=0; score=0.59649; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0

MA0685.1_shift1 (SP4)
; dyads_m34 versus MA0685.1 (SP4); m=7/10; ncol2=17; w=14; offset=-1; strand=D; shift=1; score=0.581714; -ywrGCCACGCCCmCty ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0

MA0741.1_shift4 (KLF16)
; dyads_m34 versus MA0741.1 (KLF16); m=8/10; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.565036; ----gmCMCgCCCMC-- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0

MA0599.1_shift4 (KLF5)
; dyads_m34 versus MA0599.1 (KLF5); m=9/10; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.563309; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA1656.1_shift0 (ZNF449)
; dyads_m34 versus MA1656.1 (ZNF449); m=10/10; ncol2=14; w=12; offset=-2; strand=D; shift=0; score=0.53567; cvaAGCCCAACcas--- ; cor=; Ncor= a 1809.0 2104.0 4135.0 6239.0 108.0 139.0 64.0 68.0 6851.0 6620.0 184.0 1143.0 2595.0 1670.0 0 0 0 c 2716.0 2320.0 1759.0 582.0 92.0 7088.0 7540.0 7479.0 300.0 96.0 7244.0 5029.0 1875.0 2195.0 0 0 0 g 1566.0 1921.0 1463.0 224.0 7368.0 322.0 28.0 54.0 182.0 829.0 167.0 473.0 1585.0 2237.0 0 0 0 t 1569.0 1315.0 303.0 615.0 92.0 111.0 28.0 59.0 327.0 115.0 65.0 1015.0 1605.0 1558.0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m23_shift4 ; 26 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m23_shift4 (dyads_m23dyads_m23)
; dyads_m23 (dyads_m23dyads_m23); m=0 (reference); ncol1=15; shift=4; ncol=19; ----rstGACAGCTGaGss ; Alignment reference a 0 0 0 0 87 66 30 10 310 2 331 1 3 2 0 220 27 78 68 c 0 0 0 0 82 92 27 6 4 328 1 0 325 0 7 35 32 102 90 g 0 0 0 0 119 134 57 319 15 5 1 333 6 0 328 42 255 94 117 t 0 0 0 0 47 43 221 0 6 0 2 1 1 333 0 38 21 61 60

MA1485.1_rc_shift5 (FERD3L_rc)
; dyads_m23 versus MA1485.1_rc (FERD3L_rc); m=1/25; ncol2=14; w=14; offset=1; strand=R; shift=5; score=0.680987; -----GTrACAGCTGkyrC ; cor=; Ncor= a 0 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 0 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0

MA0499.2_rc_shift5 (MYOD1_rc)
; dyads_m23 versus MA0499.2_rc (MYOD1_rc); m=2/25; ncol2=13; w=13; offset=1; strand=R; shift=5; score=0.671848; -----rkrACAGGTGcwg- ; cor=; Ncor= a 0 0 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 0 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 0 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 0 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0

MA1619.1_shift6 (Ptf1a(var.2))
; dyads_m23 versus MA1619.1 (Ptf1a(var.2)); m=3/25; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.664977; ------rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA1641.1_rc_shift6 (MYF5_rc)
; dyads_m23 versus MA1641.1_rc (MYF5_rc); m=4/25; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.664316; ------gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0

MA0521.1_shift7 (Tcf12)
; dyads_m23 versus MA0521.1 (Tcf12); m=5/25; ncol2=11; w=11; offset=3; strand=D; shift=7; score=0.638865; -------rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA0500.2_rc_shift6 (MYOG_rc)
; dyads_m23 versus MA0500.2_rc (MYOG_rc); m=6/25; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.622943; ------sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA1571.1_rc_shift6 (TGIF2LX_rc)
; dyads_m23 versus MA1571.1_rc (TGIF2LX_rc); m=7/25; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.611776; ------TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0

MA0796.1_shift6 (TGIF1)
; dyads_m23 versus MA0796.1 (TGIF1); m=8/25; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.609073; ------TGACAGCTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 c 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 g 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 t 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0

MA1593.1_shift6 (ZNF317)
; dyads_m23 versus MA1593.1 (ZNF317); m=9/25; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.602025; ------wrACAGCAGAyw- ; cor=; Ncor= a 0 0 0 0 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 c 0 0 0 0 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 g 0 0 0 0 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 t 0 0 0 0 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0

MA1572.1_rc_shift6 (TGIF2LY_rc)
; dyads_m23 versus MA1572.1_rc (TGIF2LY_rc); m=10/25; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.600879; ------TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0

MA0797.1_shift6 (TGIF2)
; dyads_m23 versus MA0797.1 (TGIF2); m=11/25; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.597474; ------TGACAGsTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0

MA0783.1_shift6 (PKNOX2)
; dyads_m23 versus MA0783.1 (PKNOX2); m=12/25; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.564877; ------TGACAGsTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 0 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 0 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0

MA1620.1_rc_shift6 (Ptf1a(var.3)_rc)
; dyads_m23 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=13/25; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.562514; ------rmaCAGGTGtky- ; cor=; Ncor= a 0 0 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 c 0 0 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 g 0 0 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 t 0 0 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0

MA1467.1_rc_shift7 (ATOH1(var.2)_rc)
; dyads_m23 versus MA1467.1_rc (ATOH1(var.2)_rc); m=14/25; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.552149; -------RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0

MA1635.1_shift7 (BHLHE22(var.2))
; dyads_m23 versus MA1635.1 (BHLHE22(var.2)); m=15/25; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.54354; -------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA1472.1_rc_shift7 (BHLHA15(var.2)_rc)
; dyads_m23 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=16/25; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.533114; -------rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0

MA0691.1_shift7 (TFAP4)
; dyads_m23 versus MA0691.1 (TFAP4); m=17/25; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.518176; -------AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA1100.2_rc_shift7 (ASCL1_rc)
; dyads_m23 versus MA1100.2_rc (ASCL1_rc); m=18/25; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.509348; -------rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0

MA0048.2_rc_shift7 (NHLH1_rc)
; dyads_m23 versus MA0048.2_rc (NHLH1_rc); m=19/25; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.495001; -------mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA0816.1_rc_shift7 (Ascl2_rc)
; dyads_m23 versus MA0816.1_rc (Ascl2_rc); m=20/25; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.489226; -------rrCAGCTGyt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 c 0 0 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 g 0 0 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 t 0 0 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0

MA0665.1_shift7 (MSC)
; dyads_m23 versus MA0665.1 (MSC); m=21/25; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.488887; -------AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 0 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 0 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0

MA0774.1_shift5 (MEIS2)
; dyads_m23 versus MA0774.1 (MEIS2); m=22/25; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.478256; -----tTGACAGs------ ; cor=; Ncor= a 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 c 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 g 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 t 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0

MA0775.1_shift5 (MEIS3)
; dyads_m23 versus MA0775.1 (MEIS3); m=23/25; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.458721; -----wTGACAgs------ ; cor=; Ncor= a 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 c 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 g 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 t 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0

MA0782.2_shift0 (PKNOX1)
; dyads_m23 versus MA0782.2 (PKNOX1); m=24/25; ncol2=15; w=11; offset=-4; strand=D; shift=0; score=0.429161; twTGAgTGACAGctr---- ; cor=; Ncor= a 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 0 0 0 c 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 0 0 0 g 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 0 0 0 t 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0 0 0 0

MA0498.2_shift5 (MEIS1)
; dyads_m23 versus MA0498.2 (MEIS1); m=25/25; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.42078; -----wTGACAg------- ; cor=; Ncor= a 0 0 0 0 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 0 0 0 c 0 0 0 0 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 0 0 0 g 0 0 0 0 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 0 0 0 t 0 0 0 0 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m38_shift2 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m38_shift2 (oligos_8nt_mkv5_m38oligos_8nt_mkv5_m38)
; oligos_8nt_mkv5_m38 (oligos_8nt_mkv5_m38oligos_8nt_mkv5_m38); m=0 (reference); ncol1=12; shift=2; ncol=16; --csCCACATCCcc-- ; Alignment reference a 0 0 32 32 5 3 142 5 126 0 7 3 34 37 0 0 c 0 0 44 39 141 141 3 130 4 2 133 140 45 44 0 0 g 0 0 36 52 2 3 2 5 14 1 3 5 35 37 0 0 t 0 0 37 26 1 2 2 9 5 146 6 1 35 31 0 0

MA0493.1_shift2 (Klf1)
; oligos_8nt_mkv5_m38 versus MA0493.1 (Klf1); m=1/9; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.680913; --rrCCACACCCw--- ; cor=; Ncor= a 0 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 c 0 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 g 0 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0

MA1511.1_shift3 (KLF10)
; oligos_8nt_mkv5_m38 versus MA1511.1 (KLF10); m=2/9; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.662451; ---gmCACrCCCmy-- ; cor=; Ncor= a 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 c 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 g 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 t 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0

MA0640.2_shift2 (ELF3)
; oligos_8nt_mkv5_m38 versus MA0640.2 (ELF3); m=3/9; ncol2=14; w=12; offset=0; strand=D; shift=2; score=0.605776; --yyccACTTCCTgbt ; cor=; Ncor= a 0 0 11697.0 9834.0 5684.0 6456.0 40643.0 554.0 1171.0 432.0 662.0 447.0 776.0 2377.0 9010.0 10659.0 c 0 0 12661.0 13181.0 24731.0 27973.0 2040.0 41950.0 1368.0 943.0 46481.0 47107.0 1315.0 9278.0 13291.0 9085.0 g 0 0 10255.0 11894.0 6930.0 4122.0 2615.0 1365.0 768.0 954.0 566.0 473.0 1989.0 28319.0 13945.0 6001.0 t 0 0 13889.0 13593.0 11157.0 9951.0 3204.0 4633.0 45195.0 46173.0 793.0 475.0 44422.0 8528.0 12256.0 22757.0

MA1107.2_shift1 (KLF9)
; oligos_8nt_mkv5_m38 versus MA1107.2 (KLF9); m=4/9; ncol2=16; w=12; offset=-1; strand=D; shift=1; score= 0.5431; -crgCCACACCCAChy ; cor=; Ncor= a 0 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 c 0 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 g 0 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 t 0 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0

MA0763.1_rc_shift5 (ETV3_rc)
; oligos_8nt_mkv5_m38 versus MA0763.1_rc (ETV3_rc); m=5/9; ncol2=10; w=9; offset=3; strand=R; shift=5; score=0.503513; -----cACTTCCGGT- ; cor=; Ncor= a 0 0 0 0 0 25.0 215.0 0.0 71.0 4.0 16.0 14.0 13.0 31.0 24.0 0 c 0 0 0 0 0 98.0 7.0 215.0 0.0 0.0 215.0 215.0 0.0 14.0 38.0 0 g 0 0 0 0 0 41.0 32.0 14.0 0.0 8.0 0.0 0.0 215.0 215.0 27.0 0 t 0 0 0 0 0 52.0 0.0 58.0 215.0 215.0 0.0 0.0 9.0 18.0 215.0 0

MA0645.1_rc_shift5 (ETV6_rc)
; oligos_8nt_mkv5_m38 versus MA0645.1_rc (ETV6_rc); m=6/9; ncol2=10; w=9; offset=3; strand=R; shift=5; score=0.496041; -----yACTTCCGsk- ; cor=; Ncor= a 0 0 0 0 0 1091.0 6687.0 0.0 41.0 0.0 22.0 13.0 308.0 441.0 2002.0 0 c 0 0 0 0 0 3205.0 233.0 6687.0 32.0 7.0 6687.0 6687.0 397.0 4292.0 4684.0 0 g 0 0 0 0 0 342.0 834.0 52.0 13.0 0.0 0.0 0.0 6379.0 2394.0 6562.0 0 t 0 0 0 0 0 2049.0 184.0 768.0 6687.0 6687.0 21.0 7.0 1476.0 342.0 9414.0 0

MA0686.1_rc_shift5 (SPDEF_rc)
; oligos_8nt_mkv5_m38 versus MA0686.1_rc (SPDEF_rc); m=7/9; ncol2=11; w=9; offset=3; strand=R; shift=5; score=0.487513; -----yAcATCCGGkT ; cor=; Ncor= a 0 0 0 0 0 810.0 4628.0 66.0 4628.0 2.0 8.0 0.0 1.0 0.0 77.0 912.0 c 0 0 0 0 0 1339.0 28.0 4628.0 11.0 6.0 4628.0 4628.0 1.0 92.0 536.0 176.0 g 0 0 0 0 0 568.0 1345.0 601.0 69.0 0.0 0.0 2.0 4628.0 4628.0 2737.0 101.0 t 0 0 0 0 0 1911.0 58.0 1566.0 532.0 4628.0 6.0 2.0 237.0 52.0 1890.0 4628.0

MA0130.1_shift2 (ZNF354C)
; oligos_8nt_mkv5_m38 versus MA0130.1 (ZNF354C); m=8/9; ncol2=6; w=6; offset=0; strand=D; shift=2; score=0.456884; --mTCCAC-------- ; cor=; Ncor= a 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 0 c 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 0 g 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 0 t 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0 0

MA1601.1_rc_shift0 (ZNF75D_rc)
; oligos_8nt_mkv5_m38 versus MA1601.1_rc (ZNF75D_rc); m=9/9; ncol2=10; w=8; offset=-2; strand=R; shift=0; score=0.416202; TyTCCCACay------ ; cor=; Ncor= a 512.0 396.0 18.0 28.0 124.0 5.0 6686.0 0.0 3519.0 1225.0 0 0 0 0 0 0 c 746.0 1693.0 15.0 6678.0 6545.0 6710.0 4.0 6757.0 1468.0 1850.0 0 0 0 0 0 0 g 256.0 576.0 20.0 29.0 44.0 18.0 59.0 0.0 715.0 1573.0 0 0 0 0 0 0 t 5245.0 4094.0 6706.0 24.0 46.0 26.0 10.0 2.0 1057.0 2111.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m44_shift1 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m44_shift1 (dyads_m44dyads_m44)
; dyads_m44 (dyads_m44dyads_m44); m=0 (reference); ncol1=12; shift=1; ncol=13; -rgCAGCAGCAgc ; Alignment reference a 0 118 47 10 311 0 0 315 0 0 285 36 36 c 0 65 73 284 2 0 314 0 0 314 10 36 176 g 0 91 136 10 2 314 0 0 315 1 19 210 67 t 0 41 59 11 0 1 1 0 0 0 1 33 36

MA1628.1_shift1 (Zic1::Zic2)
; dyads_m44 versus MA1628.1 (Zic1::Zic2); m=1/5; ncol2=11; w=11; offset=0; strand=D; shift=1; score=0.676587; -cvCAGCAGGsr- ; cor=; Ncor= a 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 c 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 g 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 t 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0

MA1646.1_shift0 (OSR2)
; dyads_m44 versus MA1646.1 (OSR2); m=2/5; ncol2=12; w=11; offset=-1; strand=D; shift=0; score=0.638512; amaCAGAAGChr- ; cor=; Ncor= a 4437.0 4244.0 8520.0 254.0 13599.0 216.0 11678.0 13725.0 416.0 666.0 4386.0 4048.0 0 c 3641.0 4206.0 2221.0 13937.0 197.0 229.0 703.0 288.0 170.0 12109.0 4274.0 3304.0 0 g 3246.0 3006.0 2117.0 406.0 737.0 14206.0 901.0 516.0 13982.0 841.0 2266.0 4726.0 0 t 3484.0 3352.0 1950.0 211.0 275.0 157.0 1526.0 279.0 240.0 1192.0 3882.0 2730.0 0

MA1542.1_rc_shift1 (OSR1_rc)
; dyads_m44 versus MA1542.1_rc (OSR1_rc); m=3/5; ncol2=10; w=10; offset=0; strand=R; shift=1; score=0.584168; -mACrGTAGCr-- ; cor=; Ncor= a 0 1731.0 4890.0 24.0 2787.0 0.0 444.0 4890.0 18.0 17.0 1843.0 0 0 c 0 1512.0 504.0 4890.0 5.0 0.0 38.0 0.0 0.0 4890.0 717.0 0 0 g 0 545.0 612.0 4.0 2103.0 4890.0 83.0 99.0 4890.0 235.0 1302.0 0 0 t 0 1102.0 407.0 62.0 0.0 10.0 4890.0 4.0 0.0 448.0 1028.0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; dyads_m44 versus MA0816.1_rc (Ascl2_rc); m=4/5; ncol2=10; w=9; offset=3; strand=R; shift=4; score=0.528508; ----rrCAGCTGy ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0

MA0048.2_rc_shift4 (NHLH1_rc)
; dyads_m44 versus MA0048.2_rc (NHLH1_rc); m=5/5; ncol2=10; w=9; offset=3; strand=R; shift=4; score=0.499421; ----mGCAGCTGC ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0

One-to-n matrix alignment; reference matrix: dyads_m13_shift1 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m13_shift1 (dyads_m13dyads_m13)
; dyads_m13 (dyads_m13dyads_m13); m=0 (reference); ncol1=10; shift=1; ncol=13; -cdGCCACChs-- ; Alignment reference a 0 172 238 0 0 0 876 0 0 242 140 0 0 c 0 387 93 0 876 867 0 876 876 246 266 0 0 g 0 180 243 876 0 9 0 0 0 112 350 0 0 t 0 137 302 0 0 0 0 0 0 276 120 0 0

MA0739.1_shift1 (Hic1)
; dyads_m13 versus MA0739.1 (Hic1); m=1/8; ncol2=9; w=9; offset=0; strand=D; shift=1; score=0.676119; -rTGCCAaCc--- ; cor=; Ncor= a 0 6337.0 62.0 950.0 50.0 88.0 9008.0 6140.0 1220.0 1610.0 0 0 0 c 0 719.0 422.0 588.0 11007.0 11007.0 1999.0 1986.0 11007.0 4822.0 0 0 0 g 0 4670.0 73.0 11007.0 121.0 31.0 3.0 2267.0 1629.0 1884.0 0 0 0 t 0 666.0 11007.0 183.0 0.0 68.0 317.0 614.0 1488.0 2692.0 0 0 0

MA1102.2_rc_shift1 (CTCFL_rc)
; dyads_m13 versus MA1102.2_rc (CTCFL_rc); m=2/8; ncol2=12; w=10; offset=0; strand=R; shift=1; score=0.601278; -scGCCCCCTGsy ; cor=; Ncor= a 0 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 c 0 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 g 0 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 t 0 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0

MA0695.1_shift0 (ZBTB7C)
; dyads_m13 versus MA0695.1 (ZBTB7C); m=3/8; ncol2=12; w=10; offset=-1; strand=D; shift=0; score=0.594345; rcgACCACCgam- ; cor=; Ncor= a 272.0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 253.0 1018.0 333.0 0 c 118.0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 138.0 444.0 315.0 0 g 463.0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 527.0 251.0 196.0 0 t 164.0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 100.0 419.0 174.0 0

MA0671.1_shift0 (NFIX)
; dyads_m13 versus MA0671.1 (NFIX); m=4/8; ncol2=9; w=8; offset=-1; strand=D; shift=0; score=0.509298; sgtGCCArv---- ; cor=; Ncor= a 7951.0 7832.0 11279.0 132.0 3.0 0.0 32864.0 32864.0 8251.0 0 0 0 0 c 8810.0 6134.0 9695.0 186.0 32864.0 32864.0 2230.0 1356.0 9039.0 0 0 0 0 g 8725.0 10855.0 5911.0 32864.0 3257.0 0.0 180.0 12688.0 9135.0 0 0 0 0 t 7378.0 8043.0 32864.0 2539.0 29.0 0.0 110.0 2399.0 6439.0 0 0 0 0

MA0130.1_shift2 (ZNF354C)
; dyads_m13 versus MA0130.1 (ZNF354C); m=5/8; ncol2=6; w=6; offset=1; strand=D; shift=2; score=0.451112; --mTCCAC----- ; cor=; Ncor= a 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 c 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 g 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 t 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0

MA0522.3_shift3 (TCF3)
; dyads_m13 versus MA0522.3 (TCF3); m=6/8; ncol2=11; w=8; offset=2; strand=D; shift=3; score=0.447148; ---svCACCTGCs ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0

MA1648.1_shift3 (TCF12(var.2))
; dyads_m13 versus MA1648.1 (TCF12(var.2)); m=7/8; ncol2=11; w=8; offset=2; strand=D; shift=3; score=0.445022; ---ssCACCTGCy ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0

MA0103.3_shift3 (ZEB1)
; dyads_m13 versus MA0103.3 (ZEB1); m=8/8; ncol2=11; w=8; offset=2; strand=D; shift=3; score=0.44074; ---ssCACCTGss ; cor=; Ncor= a 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 c 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 g 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 t 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m40_shift2 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m40_shift2 (oligos_7nt_mkv4_m40oligos_7nt_mkv4_m40)
; oligos_7nt_mkv4_m40 (oligos_7nt_mkv4_m40oligos_7nt_mkv4_m40); m=0 (reference); ncol1=11; shift=2; ncol=13; --ssCGyGCGCss ; Alignment reference a 0 0 23 29 1 4 15 12 1 2 1 30 27 c 0 0 130 79 264 3 89 11 269 1 262 93 101 g 0 0 89 142 6 267 50 243 3 270 4 127 115 t 0 0 32 24 3 0 120 8 1 1 7 24 31

MA0506.1_shift1 (NRF1)
; oligos_7nt_mkv4_m40 versus MA0506.1 (NRF1); m=1/8; ncol2=11; w=10; offset=-1; strand=D; shift=1; score=0.674874; -GCGCmTGCGCr- ; cor=; Ncor= a 0 602.0 623.0 196.0 0.0 1514.0 0.0 0.0 0.0 0.0 74.0 2245.0 0 c 0 375.0 4001.0 189.0 4016.0 1862.0 403.0 0.0 4338.0 349.0 4550.0 804.0 0 g 0 3647.0 0.0 4239.0 468.0 935.0 528.0 4624.0 0.0 4275.0 0.0 1575.0 0 t 0 0.0 0.0 0.0 140.0 313.0 3693.0 0.0 286.0 0.0 0.0 0.0 0

MA0632.2_shift3 (TCFL5)
; oligos_7nt_mkv4_m40 versus MA0632.2 (TCFL5); m=2/8; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.668205; ---kCrCGCGCmc ; cor=; Ncor= a 0 0 0 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 72543.0 10588.0 c 0 0 0 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 44394.0 47538.0 g 0 0 0 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 19096.0 5747.0 t 0 0 0 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 25921.0 8670.0

MA0131.2_shift1 (HINFP)
; oligos_7nt_mkv4_m40 versus MA0131.2 (HINFP); m=3/8; ncol2=12; w=11; offset=-1; strand=D; shift=1; score=0.647461; -carCGTCCGCgk ; cor=; Ncor= a 0 23.0 285.0 276.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 85.0 77.0 c 0 340.0 131.0 45.0 388.0 14.0 0.0 404.0 413.0 31.0 395.0 55.0 84.0 g 0 106.0 113.0 217.0 97.0 484.0 0.0 13.0 0.0 472.0 15.0 188.0 154.0 t 0 100.0 53.0 17.0 7.0 10.0 470.0 0.0 3.0 21.0 12.0 97.0 107.0

MA1650.1_rc_shift3 (ZBTB14_rc)
; oligos_7nt_mkv4_m40 versus MA1650.1_rc (ZBTB14_rc); m=4/8; ncol2=12; w=10; offset=1; strand=R; shift=3; score=0.629739; ---ssGTGCGCGG ; cor=; Ncor= a 0 0 0 606.0 508.0 123.0 0.0 52.0 67.0 82.0 62.0 59.0 73.0 c 0 0 0 1239.0 1451.0 651.0 10.0 261.0 4043.0 319.0 4098.0 155.0 614.0 g 0 0 0 2260.0 1618.0 3674.0 37.0 4178.0 305.0 4078.0 294.0 4292.0 3525.0 t 0 0 0 442.0 970.0 99.0 4500.0 56.0 132.0 68.0 93.0 41.0 335.0

MA0006.1_shift2 (Ahr::Arnt)
; oligos_7nt_mkv4_m40 versus MA0006.1 (Ahr::Arnt); m=5/8; ncol2=6; w=6; offset=0; strand=D; shift=2; score=0.468421; --yGCGTG----- ; cor=; Ncor= a 0 0 3.0 0.0 0.0 0.0 0.0 0.0 0 0 0 0 0 c 0 0 8.0 0.0 23.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 2.0 23.0 0.0 23.0 0.0 24.0 0 0 0 0 0 t 0 0 11.0 1.0 1.0 1.0 24.0 0.0 0 0 0 0 0

MA0259.1_shift1 (ARNT::HIF1A)
; oligos_7nt_mkv4_m40 versus MA0259.1 (ARNT::HIF1A); m=6/8; ncol2=8; w=7; offset=-1; strand=D; shift=1; score=0.452233; -vbACGTGc---- ; cor=; Ncor= a 0 27.0 10.0 78.0 0.0 0.0 0.0 0.0 18.0 0 0 0 0 c 0 28.0 29.0 2.0 103.0 0.0 0.0 0.0 51.0 0 0 0 0 g 0 49.0 34.0 23.0 0.0 104.0 0.0 104.0 20.0 0 0 0 0 t 0 0.0 31.0 1.0 1.0 0.0 104.0 0.0 15.0 0 0 0 0

MA1560.1_rc_shift0 (SOHLH2_rc)
; oligos_7nt_mkv4_m40 versus MA1560.1_rc (SOHLH2_rc); m=7/8; ncol2=10; w=8; offset=-2; strand=R; shift=0; score=0.430952; ygCACGTGcr--- ; cor=; Ncor= a 224.0 153.0 4.0 1212.0 15.0 7.0 0.0 70.0 276.0 313.0 0 0 0 c 369.0 172.0 1212.0 0.0 1212.0 11.0 41.0 29.0 1212.0 184.0 0 0 0 g 239.0 1212.0 4.0 65.0 0.0 1212.0 0.0 1212.0 264.0 485.0 0 0 0 t 381.0 272.0 41.0 36.0 14.0 0.0 1212.0 45.0 172.0 230.0 0 0 0

MA0004.1_shift2 (Arnt)
; oligos_7nt_mkv4_m40 versus MA0004.1 (Arnt); m=8/8; ncol2=6; w=6; offset=0; strand=D; shift=2; score=0.413496; --CACGTG----- ; cor=; Ncor= a 0 0 4.0 19.0 0.0 0.0 0.0 0.0 0 0 0 0 0 c 0 0 16.0 0.0 20.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0.0 1.0 0.0 20.0 0.0 20.0 0 0 0 0 0 t 0 0 0.0 0.0 0.0 0.0 20.0 0.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m29_shift0 ; 35 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m29_shift0 (oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29)
; oligos_6nt_mkv3_m29 (oligos_6nt_mkv3_m29oligos_6nt_mkv3_m29); m=0 (reference); ncol1=17; shift=0; ncol=17; rsrgACAGCTGCtrmss ; Alignment reference a 325 295 491 197 1119 1 1241 5 8 2 2 66 225 421 419 222 276 c 296 344 179 155 36 1238 0 9 1216 1 0 912 237 292 334 324 353 g 384 446 314 834 65 0 0 1224 13 1 1235 135 177 358 267 412 351 t 236 156 257 55 21 2 0 3 4 1237 4 128 602 170 221 283 261

MA0499.2_rc_shift1 (MYOD1_rc)
; oligos_6nt_mkv3_m29 versus MA0499.2_rc (MYOD1_rc); m=1/34; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.673212; -rkrACAGGTGcwg--- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0832.1_shift1 (Tcf21)
; oligos_6nt_mkv3_m29 versus MA0832.1 (Tcf21); m=2/34; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.667976; -ryAACAGCTGTTry-- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0500.2_rc_shift2 (MYOG_rc)
; oligos_6nt_mkv3_m29 versus MA0500.2_rc (MYOG_rc); m=3/34; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.641396; --sarCAGCTGyts--- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1641.1_shift2 (MYF5)
; oligos_6nt_mkv3_m29 versus MA1641.1 (MYF5); m=4/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.636669; --gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; oligos_6nt_mkv3_m29 versus MA1619.1 (Ptf1a(var.2)); m=5/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.633129; --rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; oligos_6nt_mkv3_m29 versus MA1485.1_rc (FERD3L_rc); m=6/34; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.631949; -GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0521.1_shift3 (Tcf12)
; oligos_6nt_mkv3_m29 versus MA0521.1 (Tcf12); m=7/34; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.614719; ---rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1621.1_rc_shift1 (Rbpjl_rc)
; oligos_6nt_mkv3_m29 versus MA1621.1_rc (Rbpjl_rc); m=8/34; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.613771; -grsaCAGGTGtkbs-- ; cor=; Ncor= a 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 0 c 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 0 g 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 0 t 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0 0

MA0745.2_rc_shift1 (SNAI2_rc)
; oligos_6nt_mkv3_m29 versus MA0745.2_rc (SNAI2_rc); m=9/34; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.596296; -rykACAGGTGcrt--- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0

MA1618.1_shift2 (Ptf1a)
; oligos_6nt_mkv3_m29 versus MA1618.1 (Ptf1a); m=10/34; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.578904; --dmaCAGATGttkh-- ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0 0

MA1631.1_shift2 (ASCL1(var.2))
; oligos_6nt_mkv3_m29 versus MA1631.1 (ASCL1(var.2)); m=11/34; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.549799; --cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0830.2_rc_shift1 (TCF4_rc)
; oligos_6nt_mkv3_m29 versus MA0830.2_rc (TCF4_rc); m=12/34; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.547177; -ssggCAGGTGccg--- ; cor=; Ncor= a 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA1123.2_rc_shift2 (TWIST1_rc)
; oligos_6nt_mkv3_m29 versus MA1123.2_rc (TWIST1_rc); m=13/34; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.546987; --avaCATCTGGwwt-- ; cor=; Ncor= a 0 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 0 0 c 0 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 0 0 g 0 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 0 0 t 0 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0 0 0

MA1109.1_shift2 (NEUROD1)
; oligos_6nt_mkv3_m29 versus MA1109.1 (NEUROD1); m=14/34; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.538708; --graCAGATGGyrs-- ; cor=; Ncor= a 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 0 0 c 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 0 0 g 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 0 0 t 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; oligos_6nt_mkv3_m29 versus MA1467.1_rc (ATOH1(var.2)_rc); m=15/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.533315; ---RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; oligos_6nt_mkv3_m29 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=16/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.531386; ---rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1620.1_shift2 (Ptf1a(var.3))
; oligos_6nt_mkv3_m29 versus MA1620.1 (Ptf1a(var.3)); m=17/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.529167; --rmaCACCTGtky--- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0

MA0816.1_shift3 (Ascl2)
; oligos_6nt_mkv3_m29 versus MA0816.1 (Ascl2); m=18/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.52791; ---arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; oligos_6nt_mkv3_m29 versus MA1635.1 (BHLHE22(var.2)); m=19/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.52459; ---csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; oligos_6nt_mkv3_m29 versus MA1100.2_rc (ASCL1_rc); m=20/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.520596; ---rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA0796.1_shift2 (TGIF1)
; oligos_6nt_mkv3_m29 versus MA0796.1 (TGIF1); m=21/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.517665; --TGACAGCTGTCA--- ; cor=; Ncor= a 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 0 c 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 0 g 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 0 t 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0 0

MA1571.1_shift2 (TGIF2LX)
; oligos_6nt_mkv3_m29 versus MA1571.1 (TGIF2LX); m=22/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.513908; --TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 0 c 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 0 g 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 0 t 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0 0

MA0797.1_shift2 (TGIF2)
; oligos_6nt_mkv3_m29 versus MA0797.1 (TGIF2); m=23/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.506991; --TGACAGsTGTCA--- ; cor=; Ncor= a 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 0 0 c 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 0 0 g 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 0 0 t 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0 0 0

MA1572.1_rc_shift2 (TGIF2LY_rc)
; oligos_6nt_mkv3_m29 versus MA1572.1_rc (TGIF2LY_rc); m=24/34; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.502717; --TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 0 0 c 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 0 0 g 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 0 0 t 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0 0 0

MA0665.1_shift3 (MSC)
; oligos_6nt_mkv3_m29 versus MA0665.1 (MSC); m=25/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.499293; ---AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0691.1_shift3 (TFAP4)
; oligos_6nt_mkv3_m29 versus MA0691.1 (TFAP4); m=26/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.492025; ---AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0048.2_shift3 (NHLH1)
; oligos_6nt_mkv3_m29 versus MA0048.2 (NHLH1); m=27/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.483937; ---cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA1648.1_shift3 (TCF12(var.2))
; oligos_6nt_mkv3_m29 versus MA1648.1 (TCF12(var.2)); m=28/34; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.473428; ---ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; oligos_6nt_mkv3_m29 versus MA0667.1_rc (MYF6_rc); m=29/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.473232; ---RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0522.3_shift3 (TCF3)
; oligos_6nt_mkv3_m29 versus MA0522.3 (TCF3); m=30/34; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.471049; ---svCACCTGCss--- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; oligos_6nt_mkv3_m29 versus MA0820.1_rc (FIGLA_rc); m=31/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.443857; ---wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

MA1559.1_shift3 (SNAI3)
; oligos_6nt_mkv3_m29 versus MA1559.1 (SNAI3); m=32/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.430746; ---arCAGGTGya---- ; cor=; Ncor= a 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0

MA0100.3_rc_shift3 (MYB_rc)
; oligos_6nt_mkv3_m29 versus MA0100.3_rc (MYB_rc); m=33/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.416141; ---kdCAGTTGvk---- ; cor=; Ncor= a 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 0 0 0 c 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 0 0 0 g 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 0 0 0 t 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0 0 0 0

MA1558.1_rc_shift3 (SNAI1_rc)
; oligos_6nt_mkv3_m29 versus MA1558.1_rc (SNAI1_rc); m=34/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.413217; ---yrCACCTGyh---- ; cor=; Ncor= a 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m34_shift0 ; 36 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m34_shift0 (oligos_6nt_mkv3_m34oligos_6nt_mkv3_m34)
; oligos_6nt_mkv3_m34 (oligos_6nt_mkv3_m34oligos_6nt_mkv3_m34); m=0 (reference); ncol1=17; shift=0; ncol=17; ssryaGCAGCTGTcysy ; Alignment reference a 291 324 530 188 680 139 3 1372 2 3 1 2 26 70 291 179 252 c 389 469 289 433 185 156 1376 4 10 1361 1 1 88 914 356 493 438 g 398 356 359 335 281 1023 1 2 1364 10 0 1376 46 193 219 386 337 t 303 232 203 425 235 63 1 3 5 7 1379 2 1221 204 515 323 354

MA0499.2_shift3 (MYOD1)
; oligos_6nt_mkv3_m34 versus MA0499.2 (MYOD1); m=1/35; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.672232; ---cwgCACCTGTymy- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; oligos_6nt_mkv3_m34 versus MA0832.1_rc (Tcf21_rc); m=2/35; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.672107; --ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA0500.2_shift3 (MYOG)
; oligos_6nt_mkv3_m34 versus MA0500.2 (MYOG); m=3/35; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.644253; ---sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; oligos_6nt_mkv3_m34 versus MA1641.1_rc (MYF5_rc); m=4/35; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.637739; ---gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; oligos_6nt_mkv3_m34 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=5/35; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.634412; ---rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA1485.1_shift2 (FERD3L)
; oligos_6nt_mkv3_m34 versus MA1485.1 (FERD3L); m=6/35; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.634024; --GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; oligos_6nt_mkv3_m34 versus MA0521.1_rc (Tcf12_rc); m=7/35; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.614866; ---cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1621.1_shift2 (Rbpjl)
; oligos_6nt_mkv3_m34 versus MA1621.1 (Rbpjl); m=8/35; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.611018; --svmaCACCTGtsyc- ; cor=; Ncor= a 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0

MA0745.2_shift3 (SNAI2)
; oligos_6nt_mkv3_m34 versus MA0745.2 (SNAI2); m=9/35; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.59495; ---aygCACCTGTmry- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA1618.1_rc_shift2 (Ptf1a_rc)
; oligos_6nt_mkv3_m34 versus MA1618.1_rc (Ptf1a_rc); m=10/35; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.577595; --dmaaCATCTGtkh-- ; cor=; Ncor= a 0 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 c 0 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 g 0 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 t 0 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; oligos_6nt_mkv3_m34 versus MA1631.1_rc (ASCL1(var.2)_rc); m=11/35; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.555611; --gsrGCAGGTGchg-- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0

MA0830.2_shift3 (TCF4)
; oligos_6nt_mkv3_m34 versus MA0830.2 (TCF4); m=12/35; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.549542; ---cggCACCTGccss- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0

MA1123.2_shift2 (TWIST1)
; oligos_6nt_mkv3_m34 versus MA1123.2 (TWIST1); m=13/35; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.548028; --awwCCAGATGtbt-- ; cor=; Ncor= a 0 0 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 6823.0 0 0 c 0 0 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 6561.0 0 0 g 0 0 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 6213.0 0 0 t 0 0 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0 7736.0 0 0

MA1109.1_rc_shift2 (NEUROD1_rc)
; oligos_6nt_mkv3_m34 versus MA1109.1_rc (NEUROD1_rc); m=14/35; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.537352; --syrCCATCTGtyc-- ; cor=; Ncor= a 0 0 525.0 451.0 580.0 168.0 31.0 2157.0 21.0 90.0 18.0 12.0 47.0 298.0 566.0 0 0 c 0 0 628.0 599.0 418.0 1962.0 2231.0 19.0 77.0 2152.0 16.0 13.0 494.0 906.0 726.0 0 0 g 0 0 591.0 540.0 911.0 93.0 7.0 51.0 150.0 24.0 7.0 2240.0 452.0 323.0 429.0 0 0 t 0 0 538.0 692.0 373.0 59.0 13.0 55.0 2034.0 16.0 2241.0 17.0 1289.0 755.0 561.0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; oligos_6nt_mkv3_m34 versus MA1467.1 (ATOH1(var.2)); m=15/35; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.533143; ----AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; oligos_6nt_mkv3_m34 versus MA1472.1 (BHLHA15(var.2)); m=16/35; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.532264; ----avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA1620.1_rc_shift3 (Ptf1a(var.3)_rc)
; oligos_6nt_mkv3_m34 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=17/35; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.529876; ---rmaCAGGTGtky-- ; cor=; Ncor= a 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; oligos_6nt_mkv3_m34 versus MA0816.1_rc (Ascl2_rc); m=18/35; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.52942; ----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; oligos_6nt_mkv3_m34 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=19/35; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.526477; ----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA1100.2_shift4 (ASCL1)
; oligos_6nt_mkv3_m34 versus MA1100.2 (ASCL1); m=20/35; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.522432; ----rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0796.1_rc_shift3 (TGIF1_rc)
; oligos_6nt_mkv3_m34 versus MA0796.1_rc (TGIF1_rc); m=21/35; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.514623; ---TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 c 0 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 g 0 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 t 0 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0

MA1571.1_rc_shift3 (TGIF2LX_rc)
; oligos_6nt_mkv3_m34 versus MA1571.1_rc (TGIF2LX_rc); m=22/35; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.511321; ---TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0

MA0797.1_rc_shift3 (TGIF2_rc)
; oligos_6nt_mkv3_m34 versus MA0797.1_rc (TGIF2_rc); m=23/35; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.503682; ---TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 c 0 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 g 0 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 t 0 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0

MA1572.1_shift3 (TGIF2LY)
; oligos_6nt_mkv3_m34 versus MA1572.1 (TGIF2LY); m=24/35; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.500055; ---TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 c 0 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 g 0 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 t 0 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; oligos_6nt_mkv3_m34 versus MA0665.1_rc (MSC_rc); m=25/35; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.498742; ----AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; oligos_6nt_mkv3_m34 versus MA0691.1_rc (TFAP4_rc); m=26/35; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.491805; ----AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; oligos_6nt_mkv3_m34 versus MA0048.2_rc (NHLH1_rc); m=27/35; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.486878; ----mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; oligos_6nt_mkv3_m34 versus MA1648.1_rc (TCF12(var.2)_rc); m=28/35; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.476548; ---srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; oligos_6nt_mkv3_m34 versus MA0522.3_rc (TCF3_rc); m=29/35; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.473968; ---ssGCAGGTGbs--- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0

MA0667.1_shift4 (MYF6)
; oligos_6nt_mkv3_m34 versus MA0667.1 (MYF6); m=30/35; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.471831; ----AACArCTGTY--- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA0820.1_shift4 (FIGLA)
; oligos_6nt_mkv3_m34 versus MA0820.1 (FIGLA); m=31/35; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.443241; ----wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

MA1559.1_rc_shift4 (SNAI3_rc)
; oligos_6nt_mkv3_m34 versus MA1559.1_rc (SNAI3_rc); m=32/35; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.428945; ----trCACCTGyt--- ; cor=; Ncor= a 0 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 c 0 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 g 0 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 t 0 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0

MA0100.3_shift4 (MYB)
; oligos_6nt_mkv3_m34 versus MA0100.3 (MYB); m=33/35; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.41572; ----mbCAACTGhm--- ; cor=; Ncor= a 0 0 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 0 c 0 0 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 0 g 0 0 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 0 t 0 0 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0 0

MA1558.1_shift4 (SNAI1)
; oligos_6nt_mkv3_m34 versus MA1558.1 (SNAI1); m=34/35; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.415055; ----drCAGGTGyr--- ; cor=; Ncor= a 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 c 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 g 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 t 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0

MA1638.1_shift4 (HAND2)
; oligos_6nt_mkv3_m34 versus MA1638.1 (HAND2); m=35/35; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.412872; ----amCAGATGby--- ; cor=; Ncor= a 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 0 0 c 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 0 0 g 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 0 0 t 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m13_shift0 ; 16 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m13_shift0 (oligos_6nt_mkv3_m13oligos_6nt_mkv3_m13)
; oligos_6nt_mkv3_m13 (oligos_6nt_mkv3_m13oligos_6nt_mkv3_m13); m=0 (reference); ncol1=15; shift=0; ncol=19; ssCGCCCCGCCCGss---- ; Alignment reference a 15 16 5 3 4 2 1 3 2 4 2 1 5 11 13 0 0 0 0 c 78 62 124 21 127 124 120 142 4 130 136 140 28 88 61 0 0 0 0 g 42 53 17 124 11 22 29 6 146 14 12 10 114 44 61 0 0 0 0 t 17 21 6 4 10 4 2 1 0 4 2 1 5 9 17 0 0 0 0

MA1513.1_shift3 (KLF15)
; oligos_6nt_mkv3_m13 versus MA1513.1 (KLF15); m=1/15; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.669806; ---scCCCGCCCcs----- ; cor=; Ncor= a 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 0 0 c 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 0 0 g 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 0 0 t 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0 0 0

MA0746.2_shift2 (SP3)
; oligos_6nt_mkv3_m13 versus MA0746.2 (SP3); m=2/15; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.659639; --srCCACGCCCmCy---- ; cor=; Ncor= a 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 0 0 0 c 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 0 0 0 g 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 0 0 0 t 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0 0 0 0

MA1564.1_shift3 (SP9)
; oligos_6nt_mkv3_m13 versus MA1564.1 (SP9); m=3/15; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.625302; ---rcCmCGCCCmcy---- ; cor=; Ncor= a 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 0 0 0 c 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 0 0 0 g 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 0 0 0 t 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0 0 0 0

MA0753.2_shift1 (ZNF740)
; oligos_6nt_mkv3_m13 versus MA0753.2 (ZNF740); m=4/15; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.611066; -cyrCCCCCCCCAc----- ; cor=; Ncor= a 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 0 0 0 0 c 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 0 0 0 0 g 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 0 0 0 0 t 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0 0 0 0 0

MA1653.1_shift2 (ZNF148)
; oligos_6nt_mkv3_m13 versus MA1653.1 (ZNF148); m=5/15; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.590581; --ysCCCCTCCCcc----- ; cor=; Ncor= a 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 0 0 0 c 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 0 0 0 g 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 0 0 0 t 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0 0 0 0

MA0039.4_shift2 (KLF4)
; oligos_6nt_mkv3_m13 versus MA0039.4 (KLF4); m=6/15; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.586258; --ssCCCCACCChs----- ; cor=; Ncor= a 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 0 0 0 c 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 0 0 0 g 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 0 0 0 t 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0 0 0 0

MA0747.1_shift3 (SP8)
; oligos_6nt_mkv3_m13 versus MA0747.1 (SP8); m=7/15; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.578851; ---rmCACgCCCmCy---- ; cor=; Ncor= a 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 0 0 0 c 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 0 0 0 g 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 0 0 0 t 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0 0 0 0

MA0741.1_shift3 (KLF16)
; oligos_6nt_mkv3_m13 versus MA0741.1 (KLF16); m=8/15; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.56498; ---gmCMCgCCCMC----- ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 0 0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 0 0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 0 0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0 0 0

MA1515.1_shift2 (KLF2)
; oligos_6nt_mkv3_m13 versus MA1515.1 (KLF2); m=9/15; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.562463; --srCCmCrCCCw------ ; cor=; Ncor= a 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 0 0 0 c 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 0 0 0 g 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 0 0 0 t 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0 0 0 0

MA0599.1_shift3 (KLF5)
; oligos_6nt_mkv3_m13 versus MA0599.1 (KLF5); m=10/15; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.557387; ---gCCMCrCCCh------ ; cor=; Ncor= a 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 0 0 c 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 0 0 g 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 t 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0 0 0

MA1512.1_shift3 (KLF11)
; oligos_6nt_mkv3_m13 versus MA1512.1 (KLF11); m=11/15; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.546324; ---gcCACGCCCmC----- ; cor=; Ncor= a 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 0 0 c 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 0 0 g 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 0 0 t 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0 0 0

MA1517.1_shift2 (KLF6)
; oligos_6nt_mkv3_m13 versus MA1517.1 (KLF6); m=12/15; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.518971; --srcCACRCCCm------ ; cor=; Ncor= a 0 0 443.0 1035.0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 0 0 0 c 0 0 624.0 490.0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 0 0 0 g 0 0 626.0 1157.0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 0 0 0 t 0 0 499.0 136.0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0 0 0 0

MA1516.1_shift2 (KLF3)
; oligos_6nt_mkv3_m13 versus MA1516.1 (KLF3); m=13/15; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.518837; --grCCrCGCCCw------ ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 0 0 0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 0 0 0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 0 0 0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0 0 0 0 0

MA0162.4_shift4 (EGR1)
; oligos_6nt_mkv3_m13 versus MA0162.4 (EGR1); m=14/15; ncol2=14; w=11; offset=4; strand=D; shift=4; score=0.45699; ----ccmCGCCCACgCms- ; cor=; Ncor= a 0 0 0 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 3809.0 0 c 0 0 0 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 13686.0 0 g 0 0 0 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 7852.0 0 t 0 0 0 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0 5251.0 0

MA0732.1_shift4 (EGR3)
; oligos_6nt_mkv3_m13 versus MA0732.1 (EGR3); m=15/15; ncol2=15; w=11; offset=4; strand=D; shift=4; score=0.409861; ----yhmCGCCCMCGCAyt ; cor=; Ncor= a 0 0 0 0 337.0 444.0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 406.0 396.0 c 0 0 0 0 645.0 485.0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 600.0 346.0 g 0 0 0 0 278.0 191.0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 110.0 230.0 t 0 0 0 0 470.0 540.0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0 549.0 683.0

One-to-n matrix alignment; reference matrix: dyads_m8_shift2 ; 14 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m8_shift2 (dyads_m8dyads_m8)
; dyads_m8 (dyads_m8dyads_m8); m=0 (reference); ncol1=14; shift=2; ncol=17; --svGCCCTGCCCCss- ; Alignment reference a 0 0 32 75 8 0 1 3 11 3 3 2 2 28 49 47 0 c 0 0 119 76 10 270 271 269 46 20 265 266 272 208 88 120 0 g 0 0 72 70 241 5 4 3 4 244 5 6 2 8 74 71 0 t 0 0 55 57 19 3 2 3 217 11 5 4 2 34 67 40 0

MA0746.2_shift3 (SP3)
; dyads_m8 versus MA0746.2 (SP3); m=1/13; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.669725; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0

MA1513.1_shift4 (KLF15)
; dyads_m8 versus MA1513.1 (KLF15); m=2/13; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.658866; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0

MA0079.4_shift1 (SP1)
; dyads_m8 versus MA0079.4 (SP1); m=3/13; ncol2=15; w=14; offset=-1; strand=D; shift=1; score=0.65873; -ywrRCCACGCCCmCh- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0

MA1653.1_shift3 (ZNF148)
; dyads_m8 versus MA1653.1 (ZNF148); m=4/13; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.603375; ---ysCCCCTCCCcc-- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0

MA0516.2_shift0 (SP2)
; dyads_m8 versus MA0516.2 (SP2); m=5/13; ncol2=17; w=14; offset=-2; strand=D; shift=0; score=0.602336; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0

MA0039.4_shift3 (KLF4)
; dyads_m8 versus MA0039.4 (KLF4); m=6/13; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.602204; ---ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0

MA1564.1_shift4 (SP9)
; dyads_m8 versus MA1564.1 (SP9); m=7/13; ncol2=12; w=12; offset=2; strand=D; shift=4; score=0.601931; ----rcCmCGCCCmcy- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0

MA0685.1_shift1 (SP4)
; dyads_m8 versus MA0685.1 (SP4); m=8/13; ncol2=17; w=14; offset=-1; strand=D; shift=1; score=0.585822; -ywrGCCACGCCCmCty ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0

MA0599.1_shift4 (KLF5)
; dyads_m8 versus MA0599.1 (KLF5); m=9/13; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.56693; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA0741.1_shift4 (KLF16)
; dyads_m8 versus MA0741.1 (KLF16); m=10/13; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.565811; ----gmCMCgCCCMC-- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0

MA0597.1_shift7 (THAP1)
; dyads_m8 versus MA0597.1 (THAP1); m=11/13; ncol2=9; w=9; offset=5; strand=D; shift=7; score=0.506173; -------ytGCCMkya- ; cor=; Ncor= a 0 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 0 c 0 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 0 g 0 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 0 t 0 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0 0

MA1630.1_rc_shift6 (Znf281_rc)
; dyads_m8 versus MA1630.1_rc (Znf281_rc); m=12/13; ncol2=11; w=10; offset=4; strand=R; shift=6; score=0.493723; ------CcTCCCCCAcc ; cor=; Ncor= a 0 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 c 0 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 g 0 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 t 0 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0

MA0738.1_shift7 (HIC2)
; dyads_m8 versus MA0738.1 (HIC2); m=13/13; ncol2=9; w=9; offset=5; strand=D; shift=7; score=0.462172; -------rTGCCMrsy- ; cor=; Ncor= a 0 0 0 0 0 0 0 2606.0 0.0 494.0 23.0 435.0 1466.0 2493.0 770.0 760.0 0 c 0 0 0 0 0 0 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 710.0 2200.0 1732.0 0 g 0 0 0 0 0 0 0 2285.0 0.0 4891.0 14.0 0.0 0.0 1290.0 1237.0 1001.0 0 t 0 0 0 0 0 0 0 367.0 4891.0 151.0 0.0 59.0 0.0 399.0 684.0 1398.0 0

One-to-n matrix alignment; reference matrix: dyads_m2_shift1 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m2_shift1 (dyads_m2dyads_m2)
; dyads_m2 (dyads_m2dyads_m2); m=0 (reference); ncol1=18; shift=1; ncol=19; -rsAACAGCTGCTGtCakc ; Alignment reference a 0 23 15 71 73 0 85 1 1 5 0 4 6 1 8 4 50 18 18 c 0 20 25 2 2 85 0 3 82 2 0 73 2 4 15 67 11 19 36 g 0 31 34 11 10 1 0 82 1 0 85 2 2 80 6 11 8 26 15 t 0 12 12 2 1 0 1 0 2 79 1 7 76 1 57 4 17 23 17

MA0832.1_shift1 (Tcf21)
; dyads_m2 versus MA0832.1 (Tcf21); m=1/19; ncol2=14; w=14; offset=0; strand=D; shift=1; score=0.668353; -ryAACAGCTGTTry---- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0 0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; dyads_m2 versus MA1485.1_rc (FERD3L_rc); m=2/19; ncol2=14; w=14; offset=0; strand=R; shift=1; score=0.574933; -GTrACAGCTGkyrC---- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0

MA0500.2_rc_shift2 (MYOG_rc)
; dyads_m2 versus MA0500.2_rc (MYOG_rc); m=3/19; ncol2=12; w=12; offset=1; strand=R; shift=2; score=0.568417; --sarCAGCTGyts----- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0

MA0499.2_rc_shift1 (MYOD1_rc)
; dyads_m2 versus MA0499.2_rc (MYOD1_rc); m=4/19; ncol2=13; w=13; offset=0; strand=R; shift=1; score=0.561479; -rkrACAGGTGcwg----- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0 0 0

MA0521.1_shift3 (Tcf12)
; dyads_m2 versus MA0521.1 (Tcf12); m=5/19; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.539844; ---rRCAGCTGswg----- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0 0

MA1641.1_shift2 (MYF5)
; dyads_m2 versus MA1641.1 (MYF5); m=6/19; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.537064; --gvaCAGCTGtbc----- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; dyads_m2 versus MA1619.1 (Ptf1a(var.2)); m=7/19; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.532347; --rmaCAGCTGtky----- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0

MA0816.1_shift3 (Ascl2)
; dyads_m2 versus MA0816.1 (Ascl2); m=8/19; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.522575; ---arCAGCTGyy------ ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0

MA0091.1_shift1 (TAL1::TCF3)
; dyads_m2 versus MA0091.1 (TAL1::TCF3); m=9/19; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.51176; -mgAmCAKMTGkT------ ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0 0 0

MA0665.1_shift3 (MSC)
; dyads_m2 versus MA0665.1 (MSC); m=10/19; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.501078; ---AACAGCTGTT------ ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0 0 0

MA0691.1_shift3 (TFAP4)
; dyads_m2 versus MA0691.1 (TFAP4); m=11/19; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.49531; ---AwCAGCTGwT------ ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; dyads_m2 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=12/19; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.489476; ---rrCAGCTGbt------ ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0 0

MA1467.1_shift3 (ATOH1(var.2))
; dyads_m2 versus MA1467.1 (ATOH1(var.2)); m=13/19; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.474648; ---AACAGCTGTY------ ; cor=; Ncor= a 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0 c 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0 g 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0 t 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; dyads_m2 versus MA0667.1_rc (MYF6_rc); m=14/19; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.473909; ---RACAGyTGTT------ ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; dyads_m2 versus MA1100.2_rc (ASCL1_rc); m=15/19; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.465503; ---rgCAGCTGyy------ ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; dyads_m2 versus MA1635.1 (BHLHE22(var.2)); m=16/19; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.45776; ---csCAGCTGsg------ ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0 0

MA0048.2_shift3 (NHLH1)
; dyads_m2 versus MA0048.2 (NHLH1); m=17/19; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.446698; ---cGCAGCTGCk------ ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0 0

MA1655.1_shift0 (ZNF341)
; dyads_m2 versus MA1655.1 (ZNF341); m=18/19; ncol2=12; w=11; offset=-1; strand=D; shift=0; score=0.445789; grGAACAGCcas------- ; cor=; Ncor= a 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 0 0 0 0 0 c 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 0 0 0 0 0 g 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 0 0 0 0 0 t 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0 0 0 0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; dyads_m2 versus MA0820.1_rc (FIGLA_rc); m=19/19; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.418472; ---wmCAGGTGkw------ ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_7nt_m14_shift2 ; 24 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m14_shift2 (local_words_7nt_m14local_words_7nt_m14)
; local_words_7nt_m14 (local_words_7nt_m14local_words_7nt_m14); m=0 (reference); ncol1=16; shift=2; ncol=18; --gsacCAGCTGCTGCys ; Alignment reference a 0 0 122 81 246 98 0 512 2 1 16 0 2 9 14 36 96 103 c 0 0 128 180 112 291 516 0 5 515 1 2 510 12 68 386 180 137 g 0 0 177 145 109 103 1 3 511 3 1 518 5 10 401 45 107 166 t 0 0 93 114 53 28 3 5 2 1 502 0 3 489 37 53 137 114

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_7nt_m14 versus MA1485.1_rc (FERD3L_rc); m=1/23; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.667695; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; local_words_7nt_m14 versus MA0832.1_rc (Tcf21_rc); m=2/23; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.667522; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA0500.2_shift3 (MYOG)
; local_words_7nt_m14 versus MA0500.2 (MYOG); m=3/23; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.659169; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA1529.1_rc_shift0 (NHLH2_rc)
; local_words_7nt_m14 versus MA1529.1_rc (NHLH2_rc); m=4/23; ncol2=18; w=16; offset=-2; strand=R; shift=0; score=0.649037; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_7nt_m14 versus MA0521.1_rc (Tcf12_rc); m=5/23; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.591973; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; local_words_7nt_m14 versus MA1631.1 (ASCL1(var.2)); m=6/23; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.591303; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; local_words_7nt_m14 versus MA1619.1 (Ptf1a(var.2)); m=7/23; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.58928; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; local_words_7nt_m14 versus MA0499.2_rc (MYOD1_rc); m=8/23; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.587659; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA1641.1_shift3 (MYF5)
; local_words_7nt_m14 versus MA1641.1 (MYF5); m=9/23; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.583164; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA0816.1_shift4 (Ascl2)
; local_words_7nt_m14 versus MA0816.1 (Ascl2); m=10/23; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.579374; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; local_words_7nt_m14 versus MA0830.2_rc (TCF4_rc); m=11/23; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.572114; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA0091.1_shift2 (TAL1::TCF3)
; local_words_7nt_m14 versus MA0091.1 (TAL1::TCF3); m=12/23; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.550172; --mgAmCAKMTGkT---- ; cor=; Ncor= a 0 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 c 0 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 g 0 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 t 0 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; local_words_7nt_m14 versus MA1635.1 (BHLHE22(var.2)); m=13/23; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.545185; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; local_words_7nt_m14 versus MA1100.2_rc (ASCL1_rc); m=14/23; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.544011; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; local_words_7nt_m14 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=15/23; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.542525; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; local_words_7nt_m14 versus MA0048.2 (NHLH1); m=16/23; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.537731; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; local_words_7nt_m14 versus MA0691.1 (TFAP4); m=17/23; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.520428; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; local_words_7nt_m14 versus MA1648.1 (TCF12(var.2)); m=18/23; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.511779; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0665.1_shift4 (MSC)
; local_words_7nt_m14 versus MA0665.1 (MSC); m=19/23; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.507167; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0522.3_shift4 (TCF3)
; local_words_7nt_m14 versus MA0522.3 (TCF3); m=20/23; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.504064; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; local_words_7nt_m14 versus MA1467.1_rc (ATOH1(var.2)_rc); m=21/23; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.496822; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; local_words_7nt_m14 versus MA0820.1 (FIGLA); m=22/23; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.460067; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; local_words_7nt_m14 versus MA0667.1_rc (MYF6_rc); m=23/23; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.454072; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m17_shift2 ; 23 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m17_shift2 (local_words_8nt_m17local_words_8nt_m17)
; local_words_8nt_m17 (local_words_8nt_m17local_words_8nt_m17); m=0 (reference); ncol1=16; shift=2; ncol=18; --scacCAGCTGCTGCys ; Alignment reference a 0 0 65 47 174 51 0 295 1 1 14 0 1 4 8 20 54 55 c 0 0 78 120 54 175 302 0 1 300 0 0 297 5 23 245 107 80 g 0 0 98 74 44 64 0 3 299 1 1 303 3 1 258 17 61 94 t 0 0 62 62 31 13 1 5 2 1 288 0 2 293 14 21 81 74

MA0832.1_rc_shift2 (Tcf21_rc)
; local_words_8nt_m17 versus MA0832.1_rc (Tcf21_rc); m=1/22; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.666534; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_8nt_m17 versus MA1485.1_rc (FERD3L_rc); m=2/22; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.665181; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0500.2_shift3 (MYOG)
; local_words_8nt_m17 versus MA0500.2 (MYOG); m=3/22; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.648941; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA1529.1_rc_shift0 (NHLH2_rc)
; local_words_8nt_m17 versus MA1529.1_rc (NHLH2_rc); m=4/22; ncol2=18; w=16; offset=-2; strand=R; shift=0; score=0.63217; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_8nt_m17 versus MA0521.1_rc (Tcf12_rc); m=5/22; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.587888; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA0816.1_shift4 (Ascl2)
; local_words_8nt_m17 versus MA0816.1 (Ascl2); m=6/22; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.579997; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; local_words_8nt_m17 versus MA1631.1 (ASCL1(var.2)); m=7/22; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.576817; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; local_words_8nt_m17 versus MA1619.1 (Ptf1a(var.2)); m=8/22; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.575195; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; local_words_8nt_m17 versus MA0499.2_rc (MYOD1_rc); m=9/22; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.570315; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA1641.1_shift3 (MYF5)
; local_words_8nt_m17 versus MA1641.1 (MYF5); m=10/22; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.569416; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA0091.1_shift2 (TAL1::TCF3)
; local_words_8nt_m17 versus MA0091.1 (TAL1::TCF3); m=11/22; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.55621; --mgAmCAKMTGkT---- ; cor=; Ncor= a 0 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 c 0 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 g 0 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 t 0 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; local_words_8nt_m17 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=12/22; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.538647; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; local_words_8nt_m17 versus MA1635.1 (BHLHE22(var.2)); m=13/22; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.538168; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; local_words_8nt_m17 versus MA1100.2_rc (ASCL1_rc); m=14/22; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.537732; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; local_words_8nt_m17 versus MA0048.2 (NHLH1); m=15/22; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.531354; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; local_words_8nt_m17 versus MA0691.1 (TFAP4); m=16/22; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.522126; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0665.1_shift4 (MSC)
; local_words_8nt_m17 versus MA0665.1 (MSC); m=17/22; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.508289; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; local_words_8nt_m17 versus MA1648.1 (TCF12(var.2)); m=18/22; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.499951; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift4 (TCF3)
; local_words_8nt_m17 versus MA0522.3 (TCF3); m=19/22; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.491367; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; local_words_8nt_m17 versus MA1467.1_rc (ATOH1(var.2)_rc); m=20/22; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.489926; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; local_words_8nt_m17 versus MA0820.1 (FIGLA); m=21/22; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.458817; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; local_words_8nt_m17 versus MA0667.1_rc (MYF6_rc); m=22/22; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.454825; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_7nt_m5_shift0 ; 12 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m5_shift0 (local_words_7nt_m5local_words_7nt_m5)
; local_words_7nt_m5 (local_words_7nt_m5local_words_7nt_m5); m=0 (reference); ncol1=19; shift=0; ncol=19; srGCAGCAGCTGCaGCtgc ; Alignment reference a 38 66 21 9 193 9 1 204 1 0 16 4 4 152 8 7 33 32 27 c 94 43 12 179 8 3 220 3 1 219 1 0 209 15 13 194 31 38 98 g 58 69 183 30 14 211 1 5 222 6 2 221 6 16 198 11 29 122 51 t 35 47 9 7 10 2 3 13 1 0 206 0 6 42 6 13 132 33 49

MA1529.1_shift0 (NHLH2)
; local_words_7nt_m5 versus MA1529.1 (NHLH2); m=1/11; ncol2=18; w=18; offset=0; strand=D; shift=0; score=0.666006; ggGyMGCAGCTGCGyCmc- ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_7nt_m5 versus MA1485.1_rc (FERD3L_rc); m=2/11; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.532638; --GTrACAGCTGkyrC--- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; local_words_7nt_m5 versus MA0500.2_rc (MYOG_rc); m=3/11; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.531004; ---sarCAGCTGyts---- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; local_words_7nt_m5 versus MA1631.1_rc (ASCL1(var.2)_rc); m=4/11; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.491841; --gsrGCAGGTGchg---- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0 0

MA0521.1_shift4 (Tcf12)
; local_words_7nt_m5 versus MA0521.1 (Tcf12); m=5/11; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.481608; ----rRCAGCTGswg---- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0

MA0816.1_shift4 (Ascl2)
; local_words_7nt_m5 versus MA0816.1 (Ascl2); m=6/11; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.477228; ----arCAGCTGyy----- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_7nt_m5 versus MA1100.2 (ASCL1); m=7/11; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.462909; ----rrCAGCTGcy----- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_7nt_m5 versus MA0048.2_rc (NHLH1_rc); m=8/11; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.460084; ----mGCAGCTGCg----- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_7nt_m5 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=9/11; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.447194; ----csCAGCTGsg----- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_7nt_m5 versus MA1472.1 (BHLHA15(var.2)); m=10/11; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.422826; ----avCAGCTGyy----- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; local_words_7nt_m5 versus MA1648.1_rc (TCF12(var.2)_rc); m=11/11; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.407507; ---srGCAGGTGss----- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m26_shift1 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m26_shift1 (oligos_8nt_mkv5_m26oligos_8nt_mkv5_m26)
; oligos_8nt_mkv5_m26 (oligos_8nt_mkv5_m26oligos_8nt_mkv5_m26); m=0 (reference); ncol1=12; shift=1; ncol=18; -rrAAGCCACAsc----- ; Alignment reference a 0 84 77 246 248 33 5 1 255 5 239 48 56 0 0 0 0 0 c 0 57 59 0 6 4 242 245 0 250 5 70 92 0 0 0 0 0 g 0 67 68 4 1 210 6 10 2 2 14 95 53 0 0 0 0 0 t 0 51 55 9 4 12 6 3 2 2 1 46 58 0 0 0 0 0

MA0002.2_rc_shift3 (RUNX1_rc)
; oligos_8nt_mkv5_m26 versus MA0002.2_rc (RUNX1_rc); m=1/5; ncol2=11; w=10; offset=2; strand=R; shift=3; score=0.665801; ---waaCCACAram---- ; cor=; Ncor= a 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 0 0 0 c 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 0 0 0 g 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 0 0 0 t 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0 0 0 0

MA0479.1_shift0 (FOXH1)
; oligos_8nt_mkv5_m26 versus MA0479.1 (FOXH1); m=2/5; ncol2=11; w=10; offset=-1; strand=D; shift=0; score=0.623561; ybsAATMCACA------- ; cor=; Ncor= a 939.0 1578.0 973.0 8211.0 7547.0 0.0 2374.0 1414.0 8211.0 0.0 7138.0 0 0 0 0 0 0 0 c 2840.0 2333.0 3261.0 0.0 0.0 0.0 5773.0 6797.0 0.0 8211.0 0.0 0 0 0 0 0 0 0 g 1490.0 2137.0 3156.0 0.0 229.0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0 t 2942.0 2163.0 821.0 0.0 435.0 8211.0 64.0 0.0 0.0 0.0 1073.0 0 0 0 0 0 0 0

MA0493.1_shift4 (Klf1)
; oligos_8nt_mkv5_m26 versus MA0493.1 (Klf1); m=3/5; ncol2=11; w=9; offset=3; strand=D; shift=4; score=0.474858; ----rrCCACACCCw--- ; cor=; Ncor= a 0 0 0 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 c 0 0 0 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 g 0 0 0 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0

MA1511.1_shift5 (KLF10)
; oligos_8nt_mkv5_m26 versus MA1511.1 (KLF10); m=4/5; ncol2=11; w=8; offset=4; strand=D; shift=5; score=0.415634; -----gmCACrCCCmy-- ; cor=; Ncor= a 0 0 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 c 0 0 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 g 0 0 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 t 0 0 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0

MA1107.2_shift3 (KLF9)
; oligos_8nt_mkv5_m26 versus MA1107.2 (KLF9); m=5/5; ncol2=16; w=10; offset=2; strand=D; shift=3; score=0.402569; ---crgCCACACCCAChy ; cor=; Ncor= a 0 0 0 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 c 0 0 0 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 g 0 0 0 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 t 0 0 0 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m33_shift0 ; 25 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m33_shift0 (oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33)
; oligos_6nt_mkv3_m33 (oligos_6nt_mkv3_m33oligos_6nt_mkv3_m33); m=0 (reference); ncol1=17; shift=0; ncol=18; ksktCAGTGACTCACmg- ; Alignment reference a 4 6 0 3 2 23 0 0 0 27 0 2 2 29 1 9 5 0 c 6 10 3 5 24 1 2 0 1 0 28 0 26 0 21 11 6 0 g 10 9 10 7 2 1 27 0 28 2 1 1 0 0 3 4 14 0 t 9 4 16 14 1 4 0 29 0 0 0 26 1 0 4 5 4 0

MA1622.1_shift3 (Smad2::Smad3)
; oligos_6nt_mkv3_m33 versus MA1622.1 (Smad2::Smad3); m=1/24; ncol2=14; w=14; offset=3; strand=D; shift=3; score=0.665682; ---rtkrTGACTCAtwm- ; cor=; Ncor= a 0 0 0 2995.0 2508.0 2499.0 4451.0 79.0 90.0 10141.0 627.0 247.0 711.0 10056.0 683.0 2948.0 2746.0 0 c 0 0 0 2254.0 2515.0 1642.0 2212.0 59.0 82.0 44.0 7480.0 53.0 9443.0 85.0 2047.0 2479.0 2595.0 0 g 0 0 0 2615.0 2324.0 3479.0 2888.0 56.0 9768.0 58.0 1542.0 68.0 90.0 79.0 1979.0 2154.0 2524.0 0 t 0 0 0 2481.0 2998.0 2725.0 794.0 10151.0 405.0 102.0 696.0 9977.0 101.0 125.0 5636.0 2764.0 2480.0 0

MA0489.1_shift1 (JUN(var.2))
; oligos_6nt_mkv3_m33 versus MA0489.1 (JUN(var.2)); m=2/24; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.621954; -rrrrrrTGAsTCAt--- ; cor=; Ncor= a 0 4852.0 3927.0 3726.0 4396.0 4146.0 5930.0 0.0 0.0 10953.0 382.0 199.0 956.0 10956.0 376.0 0 0 0 c 0 1250.0 1324.0 1127.0 1122.0 593.0 993.0 0.0 0.0 0.0 5704.0 0.0 10000.0 0.0 2509.0 0 0 0 g 0 2818.0 4110.0 4330.0 3461.0 4213.0 4033.0 0.0 10956.0 0.0 4090.0 0.0 0.0 0.0 2645.0 0 0 0 t 0 2036.0 1595.0 1773.0 1977.0 2004.0 0.0 10956.0 0.0 3.0 780.0 10757.0 0.0 0.0 5426.0 0 0 0

MA1141.1_rc_shift4 (FOS::JUND_rc)
; oligos_6nt_mkv3_m33 versus MA1141.1_rc (FOS::JUND_rc); m=3/24; ncol2=13; w=13; offset=4; strand=R; shift=4; score=0.621379; ----bkrTGACTCAymm- ; cor=; Ncor= a 0 0 0 0 180.0 185.0 612.0 0.0 0.0 999.0 19.0 15.0 129.0 999.0 38.0 263.0 258.0 0 c 0 0 0 0 292.0 195.0 77.0 0.0 0.0 0.0 867.0 0.0 871.0 0.0 266.0 389.0 315.0 0 g 0 0 0 0 264.0 370.0 290.0 0.0 970.0 0.0 40.0 91.0 0.0 1.0 104.0 167.0 244.0 0 t 0 0 0 0 264.0 250.0 21.0 999.0 29.0 0.0 75.0 894.0 0.0 0.0 593.0 182.0 183.0 0

MA1128.1_shift4 (FOSL1::JUN)
; oligos_6nt_mkv3_m33 versus MA1128.1 (FOSL1::JUN); m=4/24; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.610349; ----kkrTGACTCAtmm- ; cor=; Ncor= a 0 0 0 0 208.0 172.0 602.0 1.0 3.0 994.0 26.0 33.0 159.0 984.0 57.0 296.0 277.0 0 c 0 0 0 0 246.0 159.0 89.0 2.0 2.0 2.0 826.0 2.0 835.0 4.0 245.0 308.0 289.0 0 g 0 0 0 0 253.0 380.0 283.0 1.0 957.0 2.0 51.0 140.0 2.0 9.0 119.0 173.0 237.0 0 t 0 0 0 0 293.0 289.0 26.0 996.0 38.0 3.0 97.0 826.0 4.0 4.0 579.0 223.0 196.0 0

MA1137.1_shift4 (FOSL1::JUNB)
; oligos_6nt_mkv3_m33 versus MA1137.1 (FOSL1::JUNB); m=5/24; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.603356; ----ykrTGAcTMAtmc- ; cor=; Ncor= a 0 0 0 0 237.0 216.0 566.0 23.0 36.0 917.0 63.0 59.0 271.0 904.0 53.0 300.0 247.0 0 c 0 0 0 0 269.0 146.0 100.0 16.0 21.0 20.0 626.0 23.0 683.0 21.0 225.0 298.0 300.0 0 g 0 0 0 0 195.0 376.0 287.0 16.0 880.0 21.0 198.0 115.0 9.0 38.0 170.0 204.0 223.0 0 t 0 0 0 0 300.0 263.0 47.0 945.0 63.0 42.0 113.0 803.0 37.0 37.0 552.0 198.0 230.0 0

MA0477.2_shift4 (FOSL1)
; oligos_6nt_mkv3_m33 versus MA0477.2 (FOSL1); m=6/24; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.600963; ----draTGACTCAthy- ; cor=; Ncor= a 0 0 0 0 14979.0 15921.0 35056.0 260.0 515.0 56806.0 2557.0 1060.0 3133.0 56408.0 2716.0 14671.0 13956.0 0 c 0 0 0 0 12491.0 11018.0 6703.0 460.0 301.0 287.0 43918.0 163.0 53711.0 344.0 10399.0 15640.0 17637.0 0 g 0 0 0 0 14848.0 16855.0 13127.0 183.0 54619.0 286.0 8615.0 598.0 278.0 566.0 6533.0 12314.0 11065.0 0 t 0 0 0 0 15363.0 13887.0 2795.0 56778.0 2246.0 302.0 2591.0 55860.0 559.0 363.0 38033.0 15056.0 15023.0 0

MA1130.1_rc_shift5 (FOSL2::JUN_rc)
; oligos_6nt_mkv3_m33 versus MA1130.1_rc (FOSL2::JUN_rc); m=7/24; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.592381; -----krTGACTCAymm- ; cor=; Ncor= a 0 0 0 0 0 209.0 589.0 1.0 1.0 998.0 58.0 29.0 158.0 998.0 55.0 269.0 268.0 0 c 0 0 0 0 0 180.0 93.0 1.0 1.0 1.0 698.0 1.0 840.0 1.0 282.0 338.0 295.0 0 g 0 0 0 0 0 341.0 299.0 0.0 979.0 1.0 141.0 123.0 1.0 1.0 121.0 179.0 248.0 0 t 0 0 0 0 0 269.0 19.0 998.0 20.0 1.0 103.0 847.0 1.0 1.0 542.0 214.0 189.0 0

MA0491.2_shift4 (JUND)
; oligos_6nt_mkv3_m33 versus MA0491.2 (JUND); m=8/24; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.575128; ----wraTGACTCAThh- ; cor=; Ncor= a 0 0 0 0 28467.0 29234.0 70166.0 644.0 1365.0 103797.0 4634.0 2053.0 4915.0 103420.0 2796.0 27969.0 28212.0 0 c 0 0 0 0 21965.0 19712.0 10173.0 757.0 873.0 650.0 76028.0 496.0 98628.0 751.0 12025.0 28250.0 29793.0 0 g 0 0 0 0 25006.0 31347.0 20586.0 443.0 99787.0 573.0 20633.0 1147.0 953.0 965.0 7908.0 22249.0 19236.0 0 t 0 0 0 0 30507.0 25652.0 5020.0 104101.0 3920.0 925.0 4650.0 102249.0 1449.0 809.0 83216.0 27477.0 28704.0 0

MA0490.2_shift4 (JUNB)
; oligos_6nt_mkv3_m33 versus MA0490.2 (JUNB); m=9/24; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.572081; ----wdATGACTCATwh- ; cor=; Ncor= a 0 0 0 0 22772.0 23561.0 56607.0 538.0 770.0 78101.0 4755.0 1999.0 5243.0 77675.0 3722.0 21544.0 21137.0 0 c 0 0 0 0 16583.0 15807.0 7817.0 654.0 550.0 523.0 59784.0 289.0 73199.0 588.0 8876.0 19230.0 20653.0 0 g 0 0 0 0 18150.0 20403.0 11566.0 322.0 74757.0 550.0 10519.0 913.0 617.0 900.0 7508.0 16491.0 15068.0 0 t 0 0 0 0 22351.0 20085.0 3866.0 78342.0 3779.0 682.0 4798.0 76655.0 797.0 693.0 59750.0 22591.0 22998.0 0

MA1134.1_rc_shift4 (FOS::JUNB_rc)
; oligos_6nt_mkv3_m33 versus MA1134.1_rc (FOS::JUNB_rc); m=10/24; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.557127; ----bkrTGAsTCAym-- ; cor=; Ncor= a 0 0 0 0 156.0 184.0 658.0 1.0 1.0 996.0 25.0 4.0 131.0 998.0 36.0 286.0 0 0 c 0 0 0 0 256.0 178.0 51.0 1.0 1.0 3.0 618.0 1.0 868.0 1.0 267.0 372.0 0 0 g 0 0 0 0 304.0 363.0 284.0 1.0 971.0 1.0 309.0 30.0 1.0 1.0 105.0 168.0 0 0 t 0 0 0 0 283.0 275.0 7.0 998.0 27.0 1.0 48.0 965.0 1.0 1.0 593.0 174.0 0 0

MA1634.1_shift5 (BATF)
; oligos_6nt_mkv3_m33 versus MA1634.1 (BATF); m=11/24; ncol2=11; w=11; offset=5; strand=D; shift=5; score=0.54537; -----waTGACTCAth-- ; cor=; Ncor= a 0 0 0 0 0 13555.0 22575.0 483.0 1139.0 45946.0 2051.0 1130.0 4742.0 45316.0 8146.0 16139.0 0 0 c 0 0 0 0 0 5742.0 8931.0 355.0 570.0 250.0 37333.0 306.0 40279.0 431.0 7566.0 12048.0 0 0 g 0 0 0 0 0 11492.0 8627.0 283.0 40617.0 341.0 5573.0 836.0 711.0 507.0 9681.0 5919.0 0 0 t 0 0 0 0 0 16219.0 6875.0 45887.0 4682.0 471.0 2051.0 44736.0 1276.0 754.0 21615.0 12902.0 0 0

MA0462.2_shift5 (BATF::JUN)
; oligos_6nt_mkv3_m33 versus MA0462.2 (BATF::JUN); m=12/24; ncol2=11; w=11; offset=5; strand=D; shift=5; score=0.543845; -----waTGACTCAth-- ; cor=; Ncor= a 0 0 0 0 0 10765.0 18789.0 367.0 834.0 37280.0 1399.0 755.0 3955.0 36854.0 6299.0 13407.0 0 0 c 0 0 0 0 0 4762.0 7260.0 275.0 400.0 204.0 31168.0 241.0 32770.0 318.0 6105.0 9668.0 0 0 g 0 0 0 0 0 9317.0 6729.0 182.0 33135.0 350.0 4188.0 539.0 522.0 424.0 7745.0 4923.0 0 0 t 0 0 0 0 0 13310.0 5376.0 37330.0 3785.0 320.0 1399.0 36619.0 907.0 558.0 18005.0 10156.0 0 0

MA0835.2_shift5 (BATF3)
; oligos_6nt_mkv3_m33 versus MA0835.2 (BATF3); m=13/24; ncol2=11; w=11; offset=5; strand=D; shift=5; score=0.540073; -----waTGACTCAtw-- ; cor=; Ncor= a 0 0 0 0 0 3609.0 6137.0 132.0 245.0 11670.0 408.0 267.0 1248.0 11529.0 2334.0 4521.0 0 0 c 0 0 0 0 0 1245.0 2106.0 59.0 62.0 92.0 10589.0 79.0 10347.0 84.0 1664.0 2733.0 0 0 g 0 0 0 0 0 2608.0 1831.0 37.0 10420.0 87.0 560.0 117.0 88.0 117.0 2249.0 1255.0 0 0 t 0 0 0 0 0 4503.0 1891.0 11737.0 1238.0 116.0 408.0 11502.0 282.0 235.0 5718.0 3456.0 0 0

MA0478.1_rc_shift6 (FOSL2_rc)
; oligos_6nt_mkv3_m33 versus MA0478.1_rc (FOSL2_rc); m=14/24; ncol2=11; w=11; offset=6; strand=R; shift=6; score=0.533227; ------vTGAsTCAyym- ; cor=; Ncor= a 0 0 0 0 0 0 1986.0 0.0 0.0 5318.0 194.0 0.0 0.0 5318.0 74.0 494.0 1405.0 0 c 0 0 0 0 0 0 1933.0 0.0 0.0 0.0 1838.0 192.0 5318.0 0.0 2328.0 2707.0 2086.0 0 g 0 0 0 0 0 0 1399.0 0.0 5113.0 0.0 3286.0 51.0 0.0 0.0 55.0 592.0 994.0 0 t 0 0 0 0 0 0 0.0 5318.0 205.0 0.0 0.0 5075.0 0.0 0.0 2861.0 1525.0 833.0 0

MA0476.1_shift5 (FOS)
; oligos_6nt_mkv3_m33 versus MA0476.1 (FOS); m=15/24; ncol2=11; w=11; offset=5; strand=D; shift=5; score=0.529952; -----dvTGAsTCATb-- ; cor=; Ncor= a 0 0 0 0 0 7879.0 7475.0 0.0 0.0 29396.0 998.0 0.0 0.0 29396.0 258.0 4006.0 0 0 c 0 0 0 0 0 712.0 10177.0 0.0 0.0 0.0 14079.0 0.0 29396.0 0.0 5823.0 8236.0 0 0 g 0 0 0 0 0 9686.0 10841.0 0.0 27108.0 0.0 11206.0 0.0 0.0 0.0 1538.0 7897.0 0 0 t 0 0 0 0 0 11119.0 903.0 29396.0 2288.0 0.0 3113.0 29396.0 0.0 0.0 21777.0 9257.0 0 0

MA1633.1_shift5 (BACH1)
; oligos_6nt_mkv3_m33 versus MA1633.1 (BACH1); m=16/24; ncol2=13; w=12; offset=5; strand=D; shift=5; score=0.503072; -----saTGACTCAGCaw ; cor=; Ncor= a 0 0 0 0 0 3257.0 6929.0 105.0 97.0 15046.0 443.0 650.0 576.0 14778.0 339.0 769.0 8799.0 4492.0 c 0 0 0 0 0 3946.0 3833.0 267.0 149.0 230.0 12597.0 220.0 14563.0 194.0 623.0 13382.0 2167.0 3574.0 g 0 0 0 0 0 4835.0 3848.0 149.0 14831.0 167.0 2083.0 266.0 178.0 310.0 13050.0 858.0 1971.0 3553.0 t 0 0 0 0 0 3519.0 947.0 15036.0 480.0 114.0 434.0 14421.0 240.0 275.0 1545.0 548.0 2620.0 3938.0

MA0099.3_rc_shift5 (FOS::JUN_rc)
; oligos_6nt_mkv3_m33 versus MA0099.3_rc (FOS::JUN_rc); m=17/24; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.488713; -----krTGACTCAy--- ; cor=; Ncor= a 0 0 0 0 0 162.0 568.0 4.0 4.0 991.0 54.0 45.0 168.0 990.0 40.0 0 0 0 c 0 0 0 0 0 164.0 95.0 2.0 3.0 2.0 688.0 4.0 824.0 2.0 257.0 0 0 0 g 0 0 0 0 0 397.0 313.0 2.0 963.0 2.0 180.0 131.0 1.0 5.0 111.0 0 0 0 t 0 0 0 0 0 277.0 24.0 992.0 30.0 5.0 78.0 820.0 7.0 3.0 592.0 0 0 0

MA1142.1_shift5 (FOSL1::JUND)
; oligos_6nt_mkv3_m33 versus MA1142.1 (FOSL1::JUND); m=18/24; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.485624; -----rrTGActmAt--- ; cor=; Ncor= a 0 0 0 0 0 265.0 551.0 30.0 22.0 864.0 49.0 98.0 270.0 912.0 174.0 0 0 0 c 0 0 0 0 0 221.0 127.0 23.0 61.0 12.0 581.0 45.0 641.0 40.0 212.0 0 0 0 g 0 0 0 0 0 279.0 282.0 34.0 777.0 82.0 191.0 187.0 25.0 17.0 144.0 0 0 0 t 0 0 0 0 0 235.0 40.0 913.0 140.0 41.0 180.0 669.0 64.0 31.0 470.0 0 0 0

MA1135.1_shift5 (FOSB::JUNB)
; oligos_6nt_mkv3_m33 versus MA1135.1 (FOSB::JUNB); m=19/24; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.478084; -----krTGAsTCAy--- ; cor=; Ncor= a 0 0 0 0 0 119.0 598.0 1.0 1.0 997.0 34.0 2.0 191.0 998.0 37.0 0 0 0 c 0 0 0 0 0 182.0 61.0 0.0 0.0 1.0 596.0 1.0 808.0 0.0 259.0 0 0 0 g 0 0 0 0 0 429.0 321.0 1.0 980.0 1.0 309.0 39.0 1.0 1.0 126.0 0 0 0 t 0 0 0 0 0 270.0 20.0 998.0 19.0 1.0 61.0 958.0 1.0 1.0 578.0 0 0 0

MA1138.1_shift5 (FOSL2::JUNB)
; oligos_6nt_mkv3_m33 versus MA1138.1 (FOSL2::JUNB); m=20/24; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.477674; -----krTGAsTCAy--- ; cor=; Ncor= a 0 0 0 0 0 151.0 621.0 0.0 0.0 999.0 54.0 1.0 168.0 999.0 35.0 0 0 0 c 0 0 0 0 0 164.0 53.0 0.0 0.0 0.0 568.0 0.0 831.0 0.0 251.0 0 0 0 g 0 0 0 0 0 407.0 314.0 0.0 985.0 0.0 292.0 26.0 0.0 0.0 112.0 0 0 0 t 0 0 0 0 0 277.0 13.0 999.0 14.0 0.0 85.0 973.0 0.0 0.0 602.0 0 0 0

MA1144.1_shift5 (FOSL2::JUND)
; oligos_6nt_mkv3_m33 versus MA1144.1 (FOSL2::JUND); m=21/24; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.477047; -----krTGAsTCAy--- ; cor=; Ncor= a 0 0 0 0 0 137.0 634.0 0.0 0.0 998.0 46.0 6.0 140.0 999.0 38.0 0 0 0 c 0 0 0 0 0 143.0 60.0 0.0 0.0 1.0 604.0 0.0 860.0 0.0 266.0 0 0 0 g 0 0 0 0 0 446.0 291.0 0.0 990.0 0.0 292.0 60.0 0.0 0.0 113.0 0 0 0 t 0 0 0 0 0 275.0 14.0 999.0 10.0 0.0 58.0 934.0 0.0 0.0 583.0 0 0 0

MA0841.1_shift5 (NFE2)
; oligos_6nt_mkv3_m33 versus MA0841.1 (NFE2); m=22/24; ncol2=11; w=11; offset=5; strand=D; shift=5; score=0.476045; -----vATGACTCATs-- ; cor=; Ncor= a 0 0 0 0 0 5589.0 18831.0 2.0 0.0 18831.0 37.0 0.0 1.0 18831.0 0.0 487.0 0 0 c 0 0 0 0 0 7208.0 9.0 8.0 0.0 11.0 14360.0 20.0 18831.0 13.0 2689.0 9860.0 0 0 g 0 0 0 0 0 5303.0 1306.0 0.0 18831.0 0.0 4472.0 3.0 0.0 8.0 10.0 5067.0 0 0 t 0 0 0 0 0 731.0 5.0 18831.0 2.0 4.0 17.0 18831.0 3.0 5.0 18831.0 3417.0 0 0

MA1132.1_shift5 (JUN::JUNB)
; oligos_6nt_mkv3_m33 versus MA1132.1 (JUN::JUNB); m=23/24; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.469471; -----kaTGACkCAt--- ; cor=; Ncor= a 0 0 0 0 0 203.0 627.0 11.0 10.0 944.0 27.0 58.0 161.0 931.0 188.0 0 0 0 c 0 0 0 0 0 128.0 134.0 10.0 21.0 10.0 826.0 24.0 707.0 24.0 248.0 0 0 0 g 0 0 0 0 0 408.0 189.0 34.0 921.0 28.0 115.0 353.0 10.0 18.0 64.0 0 0 0 t 0 0 0 0 0 261.0 50.0 946.0 47.0 18.0 33.0 565.0 122.0 27.0 500.0 0 0 0

MA0655.1_shift6 (JDP2)
; oligos_6nt_mkv3_m33 versus MA0655.1 (JDP2); m=24/24; ncol2=9; w=9; offset=6; strand=D; shift=6; score=0.415498; ------ATGASTCAT--- ; cor=; Ncor= a 0 0 0 0 0 0 1634.0 5.0 0.0 1634.0 14.0 6.0 22.0 1634.0 22.0 0 0 0 c 0 0 0 0 0 0 19.0 6.0 3.0 1.0 1200.0 0.0 1634.0 0.0 404.0 0 0 0 g 0 0 0 0 0 0 140.0 1.0 1634.0 2.0 434.0 6.0 3.0 0.0 5.0 0 0 0 t 0 0 0 0 0 0 8.0 1634.0 22.0 25.0 13.0 1634.0 9.0 7.0 1634.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m37_shift4 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m37_shift4 (oligos_7nt_mkv4_m37oligos_7nt_mkv4_m37)
; oligos_7nt_mkv4_m37 (oligos_7nt_mkv4_m37oligos_7nt_mkv4_m37); m=0 (reference); ncol1=12; shift=4; ncol=16; ----sgAGGCTGAGss ; Alignment reference a 0 0 0 0 20 29 157 0 2 2 0 5 161 1 32 36 c 0 0 0 0 46 40 5 4 0 154 7 0 0 8 45 56 g 0 0 0 0 70 75 1 158 160 6 12 157 1 152 63 41 t 0 0 0 0 27 19 0 1 1 1 144 1 1 2 23 30

MA1596.1_rc_shift0 (ZNF460_rc)
; oligos_7nt_mkv4_m37 versus MA1596.1_rc (ZNF460_rc); m=1/2; ncol2=16; w=12; offset=-4; strand=R; shift=0; score=0.66473; CyyGGGAGGCkGAGGy ; cor=; Ncor= a 64.0 29.0 56.0 40.0 9.0 10.0 1570.0 6.0 11.0 35.0 85.0 29.0 1284.0 66.0 114.0 46.0 c 1147.0 421.0 930.0 27.0 15.0 15.0 17.0 9.0 7.0 1493.0 181.0 47.0 83.0 67.0 185.0 1023.0 g 158.0 175.0 110.0 1533.0 1583.0 1584.0 12.0 1596.0 1588.0 23.0 495.0 1519.0 218.0 1460.0 1264.0 131.0 t 243.0 987.0 516.0 12.0 5.0 3.0 13.0 1.0 6.0 61.0 851.0 17.0 27.0 19.0 49.0 412.0

MA0496.3_rc_shift5 (MAFK_rc)
; oligos_7nt_mkv4_m37 versus MA0496.3_rc (MAFK_rc); m=2/2; ncol2=15; w=11; offset=1; strand=R; shift=5; score=0.489382; -----wwkGCTGAGTC ; cor=; Ncor= a 0 0 0 0 0 18619.0 14552.0 8204.0 2285.0 4361.0 1910.0 1087.0 46798.0 2544.0 1274.0 2565.0 c 0 0 0 0 0 8541.0 10512.0 4590.0 3327.0 44013.0 1267.0 957.0 1081.0 7573.0 1306.0 46695.0 g 0 0 0 0 0 9756.0 10737.0 14138.0 43458.0 1921.0 882.0 47872.0 1133.0 39125.0 1670.0 1366.0 t 0 0 0 0 0 14818.0 15933.0 24802.0 2664.0 1439.0 47675.0 1818.0 2722.0 2492.0 47484.0 1108.0

One-to-n matrix alignment; reference matrix: dyads_m25_shift3 ; 13 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m25_shift3 (dyads_m25dyads_m25)
; dyads_m25 (dyads_m25dyads_m25); m=0 (reference); ncol1=10; shift=3; ncol=17; ---ssAGTGACas---- ; Alignment reference a 0 0 0 99 75 417 0 0 1 419 0 197 87 0 0 0 0 c 0 0 0 112 191 2 0 2 0 0 419 95 106 0 0 0 0 g 0 0 0 117 107 0 419 0 418 0 0 38 168 0 0 0 0 t 0 0 0 91 46 0 0 417 0 0 0 89 58 0 0 0 0

MA0067.1_rc_shift4 (Pax2_rc)
; dyads_m25 versus MA0067.1_rc (Pax2_rc); m=1/12; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.66457; ----vmrTGAcw----- ; cor=; Ncor= a 0 0 0 0 8.0 10.0 11.0 1.0 2.0 26.0 2.0 9.0 0 0 0 0 0 c 0 0 0 0 11.0 19.0 1.0 3.0 1.0 0.0 21.0 5.0 0 0 0 0 0 g 0 0 0 0 11.0 0.0 17.0 1.0 28.0 2.0 1.0 7.0 0 0 0 0 0 t 0 0 0 0 1.0 2.0 2.0 26.0 0.0 3.0 7.0 10.0 0 0 0 0 0

MA1110.1_shift3 (NR1H4)
; dyads_m25 versus MA1110.1 (NR1H4); m=2/12; ncol2=11; w=10; offset=0; strand=D; shift=3; score=0.646913; ---tcAATGACCyh--- ; cor=; Ncor= a 0 0 0 76.0 68.0 461.0 413.0 3.0 24.0 455.0 26.0 12.0 72.0 135.0 0 0 0 c 0 0 0 83.0 240.0 10.0 28.0 15.0 7.0 22.0 468.0 476.0 135.0 131.0 0 0 0 g 0 0 0 117.0 87.0 12.0 36.0 6.0 462.0 14.0 0.0 6.0 81.0 105.0 0 0 0 t 0 0 0 229.0 110.0 22.0 28.0 481.0 12.0 14.0 11.0 11.0 217.0 134.0 0 0 0

MA0498.2_shift6 (MEIS1)
; dyads_m25 versus MA0498.2 (MEIS1); m=3/12; ncol2=7; w=7; offset=3; strand=D; shift=6; score=0.571471; ------wTGACAg---- ; cor=; Ncor= a 0 0 0 0 0 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 c 0 0 0 0 0 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 g 0 0 0 0 0 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 t 0 0 0 0 0 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0

MA0782.2_shift1 (PKNOX1)
; dyads_m25 versus MA0782.2 (PKNOX1); m=4/12; ncol2=15; w=10; offset=-2; strand=D; shift=1; score=0.560234; -twTGAgTGACAGctr- ; cor=; Ncor= a 0 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 c 0 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 g 0 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 t 0 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0

MA0775.1_shift6 (MEIS3)
; dyads_m25 versus MA0775.1 (MEIS3); m=5/12; ncol2=8; w=7; offset=3; strand=D; shift=6; score=0.529505; ------wTGACAgs--- ; cor=; Ncor= a 0 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 c 0 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 g 0 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 t 0 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0

MA0774.1_shift6 (MEIS2)
; dyads_m25 versus MA0774.1 (MEIS2); m=6/12; ncol2=8; w=7; offset=3; strand=D; shift=6; score=0.494507; ------tTGACAGs--- ; cor=; Ncor= a 0 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 c 0 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 g 0 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 t 0 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0

MA1114.1_shift0 (PBX3)
; dyads_m25 versus MA1114.1 (PBX3); m=7/12; ncol2=17; w=10; offset=-3; strand=D; shift=0; score=0.483229; gkbTGAGTGACAGgcrs ; cor=; Ncor= a 1595.0 1510.0 1320.0 596.0 228.0 6426.0 335.0 247.0 146.0 6164.0 150.0 6091.0 369.0 884.0 1251.0 1869.0 1495.0 c 1711.0 1724.0 1849.0 225.0 227.0 125.0 788.0 199.0 242.0 108.0 6524.0 129.0 412.0 1377.0 2654.0 1619.0 1801.0 g 2192.0 1934.0 1928.0 503.0 6406.0 214.0 4929.0 285.0 6550.0 604.0 209.0 425.0 5691.0 4077.0 1591.0 2068.0 2217.0 t 1523.0 1853.0 1924.0 5697.0 160.0 256.0 969.0 6290.0 83.0 145.0 138.0 376.0 549.0 683.0 1525.0 1465.0 1508.0

MA0160.1_rc_shift6 (NR4A2_rc)
; dyads_m25 versus MA0160.1_rc (NR4A2_rc); m=8/12; ncol2=8; w=7; offset=3; strand=R; shift=6; score=0.462862; ------gTGACCTt--- ; cor=; Ncor= a 0 0 0 0 0 0 0.0 0.0 1.0 10.0 0.0 1.0 0.0 1.0 0 0 0 c 0 0 0 0 0 0 2.0 0.0 0.0 0.0 11.0 13.0 1.0 3.0 0 0 0 g 0 0 0 0 0 0 8.0 0.0 13.0 2.0 0.0 0.0 0.0 1.0 0 0 0 t 0 0 0 0 0 0 3.0 14.0 0.0 2.0 3.0 0.0 13.0 8.0 0 0 0

MA0609.2_shift3 (CREM)
; dyads_m25 versus MA0609.2 (CREM); m=9/12; ncol2=16; w=10; offset=0; strand=D; shift=3; score=0.441633; ---gcrgTGACGTCAcy ; cor=; Ncor= a 0 0 0 3865.0 3966.0 5881.0 2936.0 559.0 434.0 15694.0 517.0 1582.0 400.0 672.0 15228.0 789.0 3757.0 c 0 0 0 4230.0 5521.0 2908.0 2159.0 730.0 1038.0 313.0 14031.0 901.0 622.0 14883.0 508.0 11146.0 4473.0 g 0 0 0 5132.0 3956.0 4474.0 11144.0 506.0 14883.0 619.0 897.0 14026.0 314.0 1039.0 730.0 2156.0 2910.0 t 0 0 0 3800.0 3584.0 3764.0 788.0 15232.0 672.0 401.0 1582.0 518.0 15691.0 433.0 561.0 2936.0 5887.0

MA1535.1_rc_shift6 (NR2C1_rc)
; dyads_m25 versus MA1535.1_rc (NR2C1_rc); m=10/12; ncol2=9; w=7; offset=3; strand=R; shift=6; score=0.435363; ------rTGACCyyk-- ; cor=; Ncor= a 0 0 0 0 0 0 2499.0 0.0 0.0 9622.0 0.0 297.0 55.0 1316.0 2225.0 0 0 c 0 0 0 0 0 0 2039.0 1716.0 321.0 271.0 9622.0 9622.0 4756.0 5587.0 1997.0 0 0 g 0 0 0 0 0 0 2786.0 0.0 9622.0 0.0 0.0 0.0 227.0 1225.0 2848.0 0 0 t 0 0 0 0 0 0 2298.0 9622.0 0.0 0.0 0.0 0.0 4866.0 4035.0 2552.0 0 0

MA0673.1_rc_shift1 (NKX2-8_rc)
; dyads_m25 versus MA0673.1_rc (NKX2-8_rc); m=11/12; ncol2=9; w=7; offset=-2; strand=R; shift=1; score=0.414619; -yTsRAGTGs------- ; cor=; Ncor= a 0 811.0 2158.0 271.0 8562.0 8562.0 110.0 516.0 2155.0 249.0 0 0 0 0 0 0 0 c 0 2593.0 696.0 4286.0 0.0 0.0 0.0 0.0 0.0 2843.0 0 0 0 0 0 0 0 g 0 1964.0 908.0 2267.0 3197.0 91.0 8562.0 595.0 8562.0 3529.0 0 0 0 0 0 0 0 t 0 3194.0 8562.0 1738.0 23.0 0.0 14.0 8562.0 70.0 1942.0 0 0 0 0 0 0 0

MA1143.1_shift6 (FOSL1::JUND(var.2))
; dyads_m25 versus MA1143.1 (FOSL1::JUND(var.2)); m=12/12; ncol2=10; w=7; offset=3; strand=D; shift=6; score=0.400562; ------rTGACgymay- ; cor=; Ncor= a 0 0 0 0 0 0 561.0 36.0 39.0 870.0 32.0 116.0 117.0 546.0 645.0 123.0 0 c 0 0 0 0 0 0 75.0 50.0 101.0 45.0 835.0 59.0 262.0 330.0 66.0 401.0 0 g 0 0 0 0 0 0 324.0 44.0 777.0 41.0 64.0 649.0 39.0 83.0 100.0 82.0 0 t 0 0 0 0 0 0 40.0 870.0 82.0 44.0 68.0 176.0 582.0 41.0 188.0 394.0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m32_shift1 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m32_shift1 (oligos_8nt_mkv5_m32oligos_8nt_mkv5_m32)
; oligos_8nt_mkv5_m32 (oligos_8nt_mkv5_m32oligos_8nt_mkv5_m32); m=0 (reference); ncol1=12; shift=1; ncol=13; -ssCAGCCGCAgc ; Alignment reference a 0 26 28 1 136 7 2 0 0 1 136 17 29 c 0 61 56 162 19 2 168 173 0 166 14 43 84 g 0 58 69 7 18 161 3 0 173 3 23 92 42 t 0 28 20 3 0 3 0 0 0 3 0 21 18

MA1583.1_shift0 (ZFP57)
; oligos_8nt_mkv5_m32 versus MA1583.1 (ZFP57); m=1/1; ncol2=13; w=12; offset=-1; strand=D; shift=0; score=0.662872; bsrtTGCCGCAsb ; cor=; Ncor= a 1156.0 1553.0 2236.0 639.0 12.0 24.0 26.0 11.0 91.0 38.0 5116.0 1450.0 1351.0 c 1721.0 1611.0 1514.0 1061.0 37.0 71.0 6254.0 5595.0 16.0 5828.0 331.0 1699.0 1665.0 g 1829.0 1598.0 1643.0 1255.0 140.0 6213.0 16.0 719.0 6166.0 279.0 729.0 1896.0 1627.0 t 1626.0 1570.0 939.0 3377.0 6143.0 24.0 36.0 7.0 59.0 187.0 156.0 1287.0 1689.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m44_shift3 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m44_shift3 (oligos_6nt_mkv3_m44oligos_6nt_mkv3_m44)
; oligos_6nt_mkv3_m44 (oligos_6nt_mkv3_m44oligos_6nt_mkv3_m44); m=0 (reference); ncol1=12; shift=3; ncol=17; ---svcAAGCCACms-- ; Alignment reference a 0 0 0 72 94 60 357 361 5 3 0 359 28 144 60 0 0 c 0 0 0 114 122 213 1 2 3 356 358 0 259 95 104 0 0 g 0 0 0 114 97 62 5 0 354 1 3 5 55 76 133 0 0 t 0 0 0 64 51 29 1 1 2 4 3 0 22 49 67 0 0

MA0479.1_shift3 (FOXH1)
; oligos_6nt_mkv3_m44 versus MA0479.1 (FOXH1); m=1/4; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.65904; ---ybsAATMCACA--- ; cor=; Ncor= a 0 0 0 939.0 1578.0 973.0 8211.0 7547.0 0.0 2374.0 1414.0 8211.0 0.0 7138.0 0 0 0 c 0 0 0 2840.0 2333.0 3261.0 0.0 0.0 0.0 5773.0 6797.0 0.0 8211.0 0.0 0 0 0 g 0 0 0 1490.0 2137.0 3156.0 0.0 229.0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 2942.0 2163.0 821.0 0.0 435.0 8211.0 64.0 0.0 0.0 0.0 1073.0 0 0 0

MA1599.1_shift0 (ZNF682)
; oligos_6nt_mkv3_m44 versus MA1599.1 (ZNF682); m=2/4; ncol2=16; w=12; offset=-3; strand=D; shift=0; score=0.546958; crGGCyAAGCCCCwrt- ; cor=; Ncor= a 205.0 304.0 110.0 103.0 100.0 48.0 953.0 999.0 6.0 13.0 5.0 7.0 66.0 367.0 324.0 192.0 0 c 423.0 234.0 85.0 42.0 795.0 597.0 72.0 31.0 7.0 999.0 1033.0 1034.0 896.0 117.0 254.0 260.0 0 g 214.0 349.0 774.0 877.0 105.0 55.0 20.0 22.0 1038.0 13.0 9.0 10.0 32.0 118.0 300.0 194.0 0 t 216.0 171.0 89.0 36.0 58.0 358.0 13.0 6.0 7.0 33.0 11.0 7.0 64.0 456.0 180.0 412.0 0

MA0002.2_rc_shift6 (RUNX1_rc)
; oligos_6nt_mkv3_m44 versus MA0002.2_rc (RUNX1_rc); m=3/4; ncol2=11; w=9; offset=3; strand=R; shift=6; score=0.48242; ------waaCCACAram ; cor=; Ncor= a 0 0 0 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 c 0 0 0 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 g 0 0 0 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 t 0 0 0 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0

MA0079.4_shift5 (SP1)
; oligos_6nt_mkv3_m44 versus MA0079.4 (SP1); m=4/4; ncol2=15; w=10; offset=2; strand=D; shift=5; score=0.421818; -----ywrRCCACGCCC ; cor=; Ncor= a 0 0 0 0 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 c 0 0 0 0 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 g 0 0 0 0 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 t 0 0 0 0 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m48_shift0 ; 27 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m48_shift0 (oligos_6nt_mkv3_m48oligos_6nt_mkv3_m48)
; oligos_6nt_mkv3_m48 (oligos_6nt_mkv3_m48oligos_6nt_mkv3_m48); m=0 (reference); ncol1=17; shift=0; ncol=17; sskgAGCAGCTGTctss ; Alignment reference a 191 204 201 67 665 103 0 892 6 5 1 0 28 41 200 119 167 c 263 308 139 162 78 76 894 1 9 880 2 0 81 569 203 298 267 g 254 243 272 591 76 688 1 1 878 8 0 895 47 153 143 272 251 t 189 142 285 77 78 30 2 3 4 4 894 2 741 134 351 208 212

MA0832.1_rc_shift2 (Tcf21_rc)
; oligos_6nt_mkv3_m48 versus MA0832.1_rc (Tcf21_rc); m=1/26; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.65791; --ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA0499.2_shift3 (MYOD1)
; oligos_6nt_mkv3_m48 versus MA0499.2 (MYOD1); m=2/26; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.644829; ---cwgCACCTGTymy- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0500.2_rc_shift3 (MYOG_rc)
; oligos_6nt_mkv3_m48 versus MA0500.2_rc (MYOG_rc); m=3/26; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.630361; ---sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; oligos_6nt_mkv3_m48 versus MA1641.1_rc (MYF5_rc); m=4/26; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.620128; ---gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; oligos_6nt_mkv3_m48 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=5/26; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.615779; ---rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA1485.1_shift2 (FERD3L)
; oligos_6nt_mkv3_m48 versus MA1485.1 (FERD3L); m=6/26; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.600888; --GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA1621.1_shift2 (Rbpjl)
; oligos_6nt_mkv3_m48 versus MA1621.1 (Rbpjl); m=7/26; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.598164; --svmaCACCTGtsyc- ; cor=; Ncor= a 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; oligos_6nt_mkv3_m48 versus MA0521.1_rc (Tcf12_rc); m=8/26; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.591331; ---cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1618.1_rc_shift2 (Ptf1a_rc)
; oligos_6nt_mkv3_m48 versus MA1618.1_rc (Ptf1a_rc); m=9/26; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.574687; --dmaaCATCTGtkh-- ; cor=; Ncor= a 0 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 c 0 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 g 0 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 t 0 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0

MA0745.2_shift3 (SNAI2)
; oligos_6nt_mkv3_m48 versus MA0745.2 (SNAI2); m=10/26; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.569007; ---aygCACCTGTmry- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; oligos_6nt_mkv3_m48 versus MA1631.1_rc (ASCL1(var.2)_rc); m=11/26; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.545448; --gsrGCAGGTGchg-- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; oligos_6nt_mkv3_m48 versus MA1467.1 (ATOH1(var.2)); m=12/26; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.536253; ----AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; oligos_6nt_mkv3_m48 versus MA0816.1_rc (Ascl2_rc); m=13/26; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.533632; ----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; oligos_6nt_mkv3_m48 versus MA1472.1 (BHLHA15(var.2)); m=14/26; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.532411; ----avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; oligos_6nt_mkv3_m48 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=15/26; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.51877; ----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA1100.2_shift4 (ASCL1)
; oligos_6nt_mkv3_m48 versus MA1100.2 (ASCL1); m=16/26; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.518418; ----rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA1620.1_rc_shift3 (Ptf1a(var.3)_rc)
; oligos_6nt_mkv3_m48 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=17/26; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.515642; ---rmaCAGGTGtky-- ; cor=; Ncor= a 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; oligos_6nt_mkv3_m48 versus MA0665.1_rc (MSC_rc); m=18/26; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.508129; ----AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA0091.1_shift2 (TAL1::TCF3)
; oligos_6nt_mkv3_m48 versus MA0091.1 (TAL1::TCF3); m=19/26; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.499458; --mgAmCAKMTGkT--- ; cor=; Ncor= a 0 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 c 0 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 g 0 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 t 0 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; oligos_6nt_mkv3_m48 versus MA0691.1_rc (TFAP4_rc); m=20/26; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.498232; ----AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; oligos_6nt_mkv3_m48 versus MA0048.2_rc (NHLH1_rc); m=21/26; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.489175; ----mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA0667.1_shift4 (MYF6)
; oligos_6nt_mkv3_m48 versus MA0667.1 (MYF6); m=22/26; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.480739; ----AACArCTGTY--- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; oligos_6nt_mkv3_m48 versus MA1648.1_rc (TCF12(var.2)_rc); m=23/26; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.469048; ---srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; oligos_6nt_mkv3_m48 versus MA0522.3_rc (TCF3_rc); m=24/26; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.467675; ---ssGCAGGTGbs--- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0

MA0820.1_shift4 (FIGLA)
; oligos_6nt_mkv3_m48 versus MA0820.1 (FIGLA); m=25/26; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.445524; ----wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

MA1559.1_rc_shift4 (SNAI3_rc)
; oligos_6nt_mkv3_m48 versus MA1559.1_rc (SNAI3_rc); m=26/26; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.416158; ----trCACCTGyt--- ; cor=; Ncor= a 0 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 c 0 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 g 0 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 t 0 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m3_shift0 ; 27 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m3_shift0 (oligos_6nt_mkv3_m3oligos_6nt_mkv3_m3)
; oligos_6nt_mkv3_m3 (oligos_6nt_mkv3_m3oligos_6nt_mkv3_m3); m=0 (reference); ncol1=17; shift=0; ncol=17; vsagACAGCTGCTctss ; Alignment reference a 192 167 296 104 634 2 761 3 5 0 0 26 66 57 102 99 157 c 196 232 127 142 40 759 1 6 753 1 0 588 78 496 158 193 215 g 227 252 181 483 73 3 1 750 2 3 763 67 47 156 73 299 228 t 149 113 160 35 17 0 1 5 4 760 1 83 573 55 431 173 164

MA0832.1_shift1 (Tcf21)
; oligos_6nt_mkv3_m3 versus MA0832.1 (Tcf21); m=1/26; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.656918; -ryAACAGCTGTTry-- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0499.2_rc_shift1 (MYOD1_rc)
; oligos_6nt_mkv3_m3 versus MA0499.2_rc (MYOD1_rc); m=2/26; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.643464; -rkrACAGGTGcwg--- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0500.2_shift2 (MYOG)
; oligos_6nt_mkv3_m3 versus MA0500.2 (MYOG); m=3/26; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.630432; --sarCAGCTGyts--- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA1641.1_shift2 (MYF5)
; oligos_6nt_mkv3_m3 versus MA1641.1 (MYF5); m=4/26; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.619531; --gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; oligos_6nt_mkv3_m3 versus MA1619.1 (Ptf1a(var.2)); m=5/26; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.615034; --rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0521.1_shift3 (Tcf12)
; oligos_6nt_mkv3_m3 versus MA0521.1 (Tcf12); m=6/26; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.59086; ---rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1621.1_rc_shift1 (Rbpjl_rc)
; oligos_6nt_mkv3_m3 versus MA1621.1_rc (Rbpjl_rc); m=7/26; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.587266; -grsaCAGGTGtkbs-- ; cor=; Ncor= a 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 0 c 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 0 g 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 0 t 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; oligos_6nt_mkv3_m3 versus MA1485.1_rc (FERD3L_rc); m=8/26; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.586794; -GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA1618.1_shift2 (Ptf1a)
; oligos_6nt_mkv3_m3 versus MA1618.1 (Ptf1a); m=9/26; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.568202; --dmaCAGATGttkh-- ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0 0

MA0745.2_rc_shift1 (SNAI2_rc)
; oligos_6nt_mkv3_m3 versus MA0745.2_rc (SNAI2_rc); m=10/26; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.566262; -rykACAGGTGcrt--- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0

MA1631.1_shift2 (ASCL1(var.2))
; oligos_6nt_mkv3_m3 versus MA1631.1 (ASCL1(var.2)); m=11/26; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.541494; --cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; oligos_6nt_mkv3_m3 versus MA1467.1_rc (ATOH1(var.2)_rc); m=12/26; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.535434; ---RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0816.1_shift3 (Ascl2)
; oligos_6nt_mkv3_m3 versus MA0816.1 (Ascl2); m=13/26; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.533159; ---arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; oligos_6nt_mkv3_m3 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=14/26; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.531781; ---rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; oligos_6nt_mkv3_m3 versus MA1635.1 (BHLHE22(var.2)); m=15/26; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.51819; ---csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; oligos_6nt_mkv3_m3 versus MA1100.2_rc (ASCL1_rc); m=16/26; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.517924; ---rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1620.1_shift2 (Ptf1a(var.3))
; oligos_6nt_mkv3_m3 versus MA1620.1 (Ptf1a(var.3)); m=17/26; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.514853; --rmaCACCTGtky--- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0

MA0665.1_shift3 (MSC)
; oligos_6nt_mkv3_m3 versus MA0665.1 (MSC); m=18/26; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.506877; ---AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0091.1_rc_shift3 (TAL1::TCF3_rc)
; oligos_6nt_mkv3_m3 versus MA0091.1_rc (TAL1::TCF3_rc); m=19/26; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.496881; ---AmCAKMTGkTck-- ; cor=; Ncor= a 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 0 0 c 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 0 0 g 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 0 0 t 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0 0 0

MA0691.1_shift3 (TFAP4)
; oligos_6nt_mkv3_m3 versus MA0691.1 (TFAP4); m=20/26; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.496863; ---AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0048.2_shift3 (NHLH1)
; oligos_6nt_mkv3_m3 versus MA0048.2 (NHLH1); m=21/26; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.488937; ---cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; oligos_6nt_mkv3_m3 versus MA0667.1_rc (MYF6_rc); m=22/26; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.479251; ---RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA1648.1_shift3 (TCF12(var.2))
; oligos_6nt_mkv3_m3 versus MA1648.1 (TCF12(var.2)); m=23/26; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.469448; ---ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift3 (TCF3)
; oligos_6nt_mkv3_m3 versus MA0522.3 (TCF3); m=24/26; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.467852; ---svCACCTGCss--- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; oligos_6nt_mkv3_m3 versus MA0820.1_rc (FIGLA_rc); m=25/26; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.443511; ---wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

MA1559.1_shift3 (SNAI3)
; oligos_6nt_mkv3_m3 versus MA1559.1 (SNAI3); m=26/26; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.413541; ---arCAGGTGya---- ; cor=; Ncor= a 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m15_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m15_shift0 (oligos_8nt_mkv5_m15oligos_8nt_mkv5_m15)
; oligos_8nt_mkv5_m15 (oligos_8nt_mkv5_m15oligos_8nt_mkv5_m15); m=0 (reference); ncol1=13; shift=0; ncol=16; bsAGAGCTGAGsm--- ; Alignment reference a 29 46 177 4 172 3 10 5 5 176 15 41 56 0 0 0 c 50 54 6 43 4 6 169 1 1 6 11 52 52 0 0 0 g 57 60 1 136 3 175 6 3 175 3 157 56 44 0 0 0 t 50 26 2 3 7 2 1 177 5 1 3 37 34 0 0 0

MA1619.1_shift0 (Ptf1a(var.2))
; oligos_8nt_mkv5_m15 versus MA1619.1 (Ptf1a(var.2)); m=1/4; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.656873; rmaCAGCTGtky---- ; cor=; Ncor= a 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 c 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 g 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 t 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0

MA1641.1_shift0 (MYF5)
; oligos_8nt_mkv5_m15 versus MA1641.1 (MYF5); m=2/4; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.649333; gvaCAGCTGtbc---- ; cor=; Ncor= a 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 c 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 g 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 t 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0

MA0521.1_shift1 (Tcf12)
; oligos_8nt_mkv5_m15 versus MA0521.1 (Tcf12); m=3/4; ncol2=11; w=11; offset=1; strand=D; shift=1; score=0.606195; -rRCAGCTGswg---- ; cor=; Ncor= a 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 c 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 g 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 t 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0

MA1633.1_rc_shift3 (BACH1_rc)
; oligos_8nt_mkv5_m15 versus MA1633.1_rc (BACH1_rc); m=4/4; ncol2=13; w=10; offset=3; strand=R; shift=3; score=0.445683; ---wtGCTGAGTCAts ; cor=; Ncor= a 0 0 0 3938.0 2620.0 548.0 1545.0 275.0 240.0 14421.0 434.0 114.0 480.0 15036.0 947.0 3519.0 c 0 0 0 3553.0 1971.0 858.0 13050.0 310.0 178.0 266.0 2083.0 167.0 14831.0 149.0 3848.0 4835.0 g 0 0 0 3574.0 2167.0 13382.0 623.0 194.0 14563.0 220.0 12597.0 230.0 149.0 267.0 3833.0 3946.0 t 0 0 0 4492.0 8799.0 769.0 339.0 14778.0 576.0 650.0 443.0 15046.0 97.0 105.0 6929.0 3257.0

One-to-n matrix alignment; reference matrix: local_words_8nt_m9_shift3 ; 24 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m9_shift3 (local_words_8nt_m9local_words_8nt_m9)
; local_words_8nt_m9 (local_words_8nt_m9local_words_8nt_m9); m=0 (reference); ncol1=18; shift=3; ncol=21; ---sgsTGACAGCTGTCAscs ; Alignment reference a 0 0 0 49 49 34 16 9 161 0 195 1 1 0 0 7 5 139 13 39 33 c 0 0 0 55 49 50 13 9 9 198 2 7 189 1 0 21 175 30 101 61 61 g 0 0 0 61 61 101 30 175 21 0 1 189 7 2 198 9 9 13 50 49 55 t 0 0 0 33 39 13 139 5 7 0 0 1 1 195 0 161 9 16 34 49 49

MA0796.1_rc_shift6 (TGIF1_rc)
; local_words_8nt_m9 versus MA0796.1_rc (TGIF1_rc); m=1/23; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.652022; ------TGACAGCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 c 0 0 0 0 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 g 0 0 0 0 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 t 0 0 0 0 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0

MA1571.1_rc_shift6 (TGIF2LX_rc)
; local_words_8nt_m9 versus MA1571.1_rc (TGIF2LX_rc); m=2/23; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.644919; ------TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 0 c 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 0 g 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 0 t 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0 0

MA1485.1_shift5 (FERD3L)
; local_words_8nt_m9 versus MA1485.1 (FERD3L); m=3/23; ncol2=14; w=14; offset=2; strand=D; shift=5; score=0.642471; -----GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0797.1_shift6 (TGIF2)
; local_words_8nt_m9 versus MA0797.1 (TGIF2); m=4/23; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.641961; ------TGACAGsTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 0 0 c 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 0 0 g 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 0 0 t 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0 0 0

MA1572.1_rc_shift6 (TGIF2LY_rc)
; local_words_8nt_m9 versus MA1572.1_rc (TGIF2LY_rc); m=5/23; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.636543; ------TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 0 0 c 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 0 0 g 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 0 0 t 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0 0 0

MA0783.1_shift6 (PKNOX2)
; local_words_8nt_m9 versus MA0783.1 (PKNOX2); m=6/23; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.616987; ------TGACAGsTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 0 0 c 0 0 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 0 0 g 0 0 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 0 0 t 0 0 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0 0 0

MA0832.1_rc_shift5 (Tcf21_rc)
; local_words_8nt_m9 versus MA0832.1_rc (Tcf21_rc); m=7/23; ncol2=14; w=14; offset=2; strand=R; shift=5; score=0.587832; -----ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 0 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 0 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 0 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 0 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA1641.1_shift6 (MYF5)
; local_words_8nt_m9 versus MA1641.1 (MYF5); m=8/23; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.579476; ------gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1619.1_shift6 (Ptf1a(var.2))
; local_words_8nt_m9 versus MA1619.1 (Ptf1a(var.2)); m=9/23; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.563546; ------rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1621.1_shift5 (Rbpjl)
; local_words_8nt_m9 versus MA1621.1 (Rbpjl); m=10/23; ncol2=14; w=14; offset=2; strand=D; shift=5; score=0.554783; -----svmaCACCTGtsyc-- ; cor=; Ncor= a 0 0 0 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 c 0 0 0 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 g 0 0 0 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 t 0 0 0 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0

MA0499.2_rc_shift5 (MYOD1_rc)
; local_words_8nt_m9 versus MA0499.2_rc (MYOD1_rc); m=11/23; ncol2=13; w=13; offset=2; strand=R; shift=5; score=0.534971; -----rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0500.2_rc_shift6 (MYOG_rc)
; local_words_8nt_m9 versus MA0500.2_rc (MYOG_rc); m=12/23; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.526665; ------sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1467.1_rc_shift7 (ATOH1(var.2)_rc)
; local_words_8nt_m9 versus MA1467.1_rc (ATOH1(var.2)_rc); m=13/23; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.50698; -------RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0521.1_rc_shift6 (Tcf12_rc)
; local_words_8nt_m9 versus MA0521.1_rc (Tcf12_rc); m=14/23; ncol2=11; w=11; offset=3; strand=R; shift=6; score=0.499533; ------cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1620.1_shift6 (Ptf1a(var.3))
; local_words_8nt_m9 versus MA1620.1 (Ptf1a(var.3)); m=15/23; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.487501; ------rmaCACCTGtky--- ; cor=; Ncor= a 0 0 0 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 c 0 0 0 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 g 0 0 0 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 t 0 0 0 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0

MA1472.1_shift7 (BHLHA15(var.2))
; local_words_8nt_m9 versus MA1472.1 (BHLHA15(var.2)); m=16/23; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.471227; -------avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA1635.1_shift7 (BHLHE22(var.2))
; local_words_8nt_m9 versus MA1635.1 (BHLHE22(var.2)); m=17/23; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.455125; -------csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1100.2_rc_shift7 (ASCL1_rc)
; local_words_8nt_m9 versus MA1100.2_rc (ASCL1_rc); m=18/23; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.451167; -------rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA0665.1_rc_shift7 (MSC_rc)
; local_words_8nt_m9 versus MA0665.1_rc (MSC_rc); m=19/23; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.450575; -------AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA0667.1_shift7 (MYF6)
; local_words_8nt_m9 versus MA0667.1 (MYF6); m=20/23; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.442022; -------AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0816.1_shift7 (Ascl2)
; local_words_8nt_m9 versus MA0816.1 (Ascl2); m=21/23; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.435321; -------arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA0691.1_rc_shift7 (TFAP4_rc)
; local_words_8nt_m9 versus MA0691.1_rc (TFAP4_rc); m=22/23; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.426989; -------AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA0782.2_shift0 (PKNOX1)
; local_words_8nt_m9 versus MA0782.2 (PKNOX1); m=23/23; ncol2=15; w=12; offset=-3; strand=D; shift=0; score=0.401386; twTGAgTGACAGctr------ ; cor=; Ncor= a 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 0 0 0 0 0 c 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 0 0 0 0 0 g 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 0 0 0 0 0 t 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_7nt_m4_shift0 ; 22 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m4_shift0 (local_words_7nt_m4local_words_7nt_m4)
; local_words_7nt_m4 (local_words_7nt_m4local_words_7nt_m4); m=0 (reference); ncol1=16; shift=0; ncol=18; srGCAGCAGCTGgcvs-- ; Alignment reference a 115 141 55 36 477 7 0 485 1 2 0 3 32 52 135 89 0 0 c 166 114 47 391 9 4 505 2 7 491 4 2 78 280 136 154 0 0 g 131 166 389 63 13 496 3 2 498 8 2 502 313 109 136 145 0 0 t 96 87 17 18 9 1 0 19 2 7 502 1 85 67 101 120 0 0

MA1485.1_shift2 (FERD3L)
; local_words_7nt_m4 versus MA1485.1 (FERD3L); m=1/21; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.651322; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; local_words_7nt_m4 versus MA0500.2_rc (MYOG_rc); m=2/21; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.64436; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1529.1_shift0 (NHLH2)
; local_words_7nt_m4 versus MA1529.1 (NHLH2); m=3/21; ncol2=18; w=16; offset=0; strand=D; shift=0; score=0.635962; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0832.1_shift2 (Tcf21)
; local_words_7nt_m4 versus MA0832.1 (Tcf21); m=4/21; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.625834; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0499.2_shift3 (MYOD1)
; local_words_7nt_m4 versus MA0499.2 (MYOD1); m=5/21; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.596836; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; local_words_7nt_m4 versus MA1631.1_rc (ASCL1(var.2)_rc); m=6/21; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.583305; --gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0

MA0521.1_shift4 (Tcf12)
; local_words_7nt_m4 versus MA0521.1 (Tcf12); m=7/21; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.581615; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_7nt_m4 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=8/21; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.580795; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA0830.2_shift3 (TCF4)
; local_words_7nt_m4 versus MA0830.2 (TCF4); m=9/21; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.577055; ---cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; local_words_7nt_m4 versus MA1641.1_rc (MYF5_rc); m=10/21; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.575313; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_7nt_m4 versus MA0816.1_rc (Ascl2_rc); m=11/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.552036; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_7nt_m4 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=12/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.540409; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_7nt_m4 versus MA1100.2 (ASCL1); m=13/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.539906; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_7nt_m4 versus MA1472.1 (BHLHA15(var.2)); m=14/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.531673; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_7nt_m4 versus MA0048.2_rc (NHLH1_rc); m=15/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.521827; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; local_words_7nt_m4 versus MA1648.1_rc (TCF12(var.2)_rc); m=16/21; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.511688; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; local_words_7nt_m4 versus MA1467.1 (ATOH1(var.2)); m=17/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.505035; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; local_words_7nt_m4 versus MA0522.3_rc (TCF3_rc); m=18/21; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.504414; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; local_words_7nt_m4 versus MA0691.1 (TFAP4); m=19/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.492333; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; local_words_7nt_m4 versus MA0665.1_rc (MSC_rc); m=20/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.482175; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; local_words_7nt_m4 versus MA0820.1 (FIGLA); m=21/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.443914; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m8_shift3 ; 29 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m8_shift3 (local_words_8nt_m8local_words_8nt_m8)
; local_words_8nt_m8 (local_words_8nt_m8local_words_8nt_m8); m=0 (reference); ncol1=17; shift=3; ncol=20; ---sggTGACAGCTGCggss ; Alignment reference a 0 0 0 67 71 55 14 9 322 0 335 0 0 2 1 18 66 54 55 60 c 0 0 0 116 80 76 34 7 3 338 0 1 328 0 4 271 44 77 105 88 g 0 0 0 93 116 187 40 321 12 1 4 336 11 5 332 24 169 160 110 115 t 0 0 0 63 72 21 251 2 2 0 0 2 0 332 2 26 60 48 69 76

MA0499.2_rc_shift5 (MYOD1_rc)
; local_words_8nt_m8 versus MA0499.2_rc (MYOD1_rc); m=1/28; ncol2=13; w=13; offset=2; strand=R; shift=5; score=0.649374; -----rkrACAGGTGcwg-- ; cor=; Ncor= a 0 0 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 0 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 0 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 0 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0

MA1485.1_rc_shift5 (FERD3L_rc)
; local_words_8nt_m8 versus MA1485.1_rc (FERD3L_rc); m=2/28; ncol2=14; w=14; offset=2; strand=R; shift=5; score=0.643196; -----GTrACAGCTGkyrC- ; cor=; Ncor= a 0 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 0 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0

MA0521.1_shift7 (Tcf12)
; local_words_8nt_m8 versus MA0521.1 (Tcf12); m=3/28; ncol2=11; w=11; offset=4; strand=D; shift=7; score=0.592381; -------rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA0832.1_shift5 (Tcf21)
; local_words_8nt_m8 versus MA0832.1 (Tcf21); m=4/28; ncol2=14; w=14; offset=2; strand=D; shift=5; score=0.587777; -----ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0

MA1641.1_shift6 (MYF5)
; local_words_8nt_m8 versus MA1641.1 (MYF5); m=5/28; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.587005; ------gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 c 0 0 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 g 0 0 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0

MA1619.1_shift6 (Ptf1a(var.2))
; local_words_8nt_m8 versus MA1619.1 (Ptf1a(var.2)); m=6/28; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.585628; ------rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA0500.2_rc_shift6 (MYOG_rc)
; local_words_8nt_m8 versus MA0500.2_rc (MYOG_rc); m=7/28; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.585614; ------sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA0745.2_rc_shift5 (SNAI2_rc)
; local_words_8nt_m8 versus MA0745.2_rc (SNAI2_rc); m=8/28; ncol2=13; w=13; offset=2; strand=R; shift=5; score=0.579306; -----rykACAGGTGcrt-- ; cor=; Ncor= a 0 0 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 c 0 0 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 g 0 0 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 t 0 0 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0

MA0796.1_shift6 (TGIF1)
; local_words_8nt_m8 versus MA0796.1 (TGIF1); m=9/28; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.535459; ------TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 c 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 g 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 t 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0

MA1571.1_rc_shift6 (TGIF2LX_rc)
; local_words_8nt_m8 versus MA1571.1_rc (TGIF2LX_rc); m=10/28; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.531747; ------TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0

MA0797.1_shift6 (TGIF2)
; local_words_8nt_m8 versus MA0797.1 (TGIF2); m=11/28; ncol2=12; w=12; offset=3; strand=D; shift=6; score= 0.5264; ------TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 0 c 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 0 g 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 0 t 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0 0

MA1572.1_rc_shift6 (TGIF2LY_rc)
; local_words_8nt_m8 versus MA1572.1_rc (TGIF2LY_rc); m=12/28; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.520615; ------TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 0 c 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 0 g 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 0 t 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0 0

MA1467.1_rc_shift7 (ATOH1(var.2)_rc)
; local_words_8nt_m8 versus MA1467.1_rc (ATOH1(var.2)_rc); m=13/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.502829; -------RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0

MA1635.1_shift7 (BHLHE22(var.2))
; local_words_8nt_m8 versus MA1635.1 (BHLHE22(var.2)); m=14/28; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.501557; -------csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0

MA0783.1_shift6 (PKNOX2)
; local_words_8nt_m8 versus MA0783.1 (PKNOX2); m=15/28; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.498775; ------TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 0 c 0 0 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 0 g 0 0 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 0 t 0 0 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0 0

MA1100.2_rc_shift7 (ASCL1_rc)
; local_words_8nt_m8 versus MA1100.2_rc (ASCL1_rc); m=16/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.496719; -------rgCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 c 0 0 0 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 g 0 0 0 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 t 0 0 0 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0

MA1472.1_rc_shift7 (BHLHA15(var.2)_rc)
; local_words_8nt_m8 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=17/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.493431; -------rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0

MA0816.1_shift7 (Ascl2)
; local_words_8nt_m8 versus MA0816.1 (Ascl2); m=18/28; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.482357; -------arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA0048.2_rc_shift7 (NHLH1_rc)
; local_words_8nt_m8 versus MA0048.2_rc (NHLH1_rc); m=19/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.47317; -------mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA1648.1_shift7 (TCF12(var.2))
; local_words_8nt_m8 versus MA1648.1 (TCF12(var.2)); m=20/28; ncol2=11; w=11; offset=4; strand=D; shift=7; score=0.455425; -------ssCACCTGCys-- ; cor=; Ncor= a 0 0 0 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 c 0 0 0 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 g 0 0 0 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 t 0 0 0 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0

MA0522.3_shift7 (TCF3)
; local_words_8nt_m8 versus MA0522.3 (TCF3); m=21/28; ncol2=11; w=11; offset=4; strand=D; shift=7; score=0.455214; -------svCACCTGCss-- ; cor=; Ncor= a 0 0 0 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 c 0 0 0 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 g 0 0 0 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 t 0 0 0 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0

MA0665.1_shift7 (MSC)
; local_words_8nt_m8 versus MA0665.1 (MSC); m=22/28; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.446204; -------AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0

MA0691.1_shift7 (TFAP4)
; local_words_8nt_m8 versus MA0691.1 (TFAP4); m=23/28; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.437711; -------AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0

MA0782.2_shift0 (PKNOX1)
; local_words_8nt_m8 versus MA0782.2 (PKNOX1); m=24/28; ncol2=15; w=12; offset=-3; strand=D; shift=0; score=0.426805; twTGAgTGACAGctr----- ; cor=; Ncor= a 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 0 0 0 0 c 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 0 0 0 0 g 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 0 0 0 0 t 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0 0 0 0 0

MA0667.1_rc_shift7 (MYF6_rc)
; local_words_8nt_m8 versus MA0667.1_rc (MYF6_rc); m=25/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.422775; -------RACAGyTGTT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 c 0 0 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 g 0 0 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 t 0 0 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0

MA1559.1_shift7 (SNAI3)
; local_words_8nt_m8 versus MA1559.1 (SNAI3); m=26/28; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.420511; -------arCAGGTGya--- ; cor=; Ncor= a 0 0 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 c 0 0 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 g 0 0 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 t 0 0 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0

MA0774.1_shift5 (MEIS2)
; local_words_8nt_m8 versus MA0774.1 (MEIS2); m=27/28; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.41906; -----tTGACAGs------- ; cor=; Ncor= a 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 0 c 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 0 g 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 0 t 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0 0

MA0775.1_shift5 (MEIS3)
; local_words_8nt_m8 versus MA0775.1 (MEIS3); m=28/28; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.405465; -----wTGACAgs------- ; cor=; Ncor= a 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 0 c 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 0 g 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 0 t 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m47_shift3 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m47_shift3 (oligos_6nt_mkv3_m47oligos_6nt_mkv3_m47)
; oligos_6nt_mkv3_m47 (oligos_6nt_mkv3_m47oligos_6nt_mkv3_m47); m=0 (reference); ncol1=10; shift=3; ncol=16; ---aCACACACAc--- ; Alignment reference a 0 0 0 748 89 1176 0 1175 0 1173 0 825 107 0 0 0 c 0 0 0 160 876 0 1175 0 1176 0 1176 153 736 0 0 0 g 0 0 0 165 119 0 0 1 0 3 0 63 186 0 0 0 t 0 0 0 103 92 0 1 0 0 0 0 135 147 0 0 0

MA1511.1_shift2 (KLF10)
; oligos_6nt_mkv3_m47 versus MA1511.1 (KLF10); m=1/6; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.648565; --gmCACrCCCmy--- ; cor=; Ncor= a 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 0 c 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 0 g 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 0 t 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0 0

MA0493.1_shift1 (Klf1)
; oligos_6nt_mkv3_m47 versus MA0493.1 (Klf1); m=2/6; ncol2=11; w=9; offset=-2; strand=D; shift=1; score=0.527673; -rrCCACACCCw---- ; cor=; Ncor= a 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 0 c 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 0 g 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0 0

MA1523.1_shift1 (MSANTD3)
; oligos_6nt_mkv3_m47 versus MA1523.1 (MSANTD3); m=3/6; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.487635; -stmCACTCAm----- ; cor=; Ncor= a 0 98.0 111.0 332.0 64.0 980.0 31.0 37.0 47.0 775.0 271.0 0 0 0 0 0 c 0 269.0 211.0 272.0 723.0 0.0 896.0 7.0 862.0 140.0 568.0 0 0 0 0 0 g 0 515.0 220.0 249.0 31.0 2.0 27.0 0.0 29.0 24.0 63.0 0 0 0 0 0 t 0 117.0 456.0 145.0 180.0 16.0 45.0 954.0 60.0 59.0 96.0 0 0 0 0 0

MA1107.2_shift0 (KLF9)
; oligos_6nt_mkv3_m47 versus MA1107.2 (KLF9); m=4/6; ncol2=16; w=10; offset=-3; strand=D; shift=0; score=0.487007; crgCCACACCCAChyc ; cor=; Ncor= a 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 5875.0 c 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 9519.0 g 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 5681.0 t 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0 4504.0

MA1155.1_shift2 (ZSCAN4)
; oligos_6nt_mkv3_m47 versus MA1155.1 (ZSCAN4); m=5/6; ncol2=15; w=10; offset=-1; strand=D; shift=2; score=0.480325; --tGCACACmCTGaAA ; cor=; Ncor= a 0 0 257.0 290.0 0.0 1292.0 0.0 1281.0 3.0 772.0 7.0 8.0 3.0 1118.0 1225.0 1269.0 c 0 0 383.0 2.0 1676.0 0.0 1665.0 0.0 1702.0 374.0 1684.0 11.0 50.0 107.0 279.0 0.0 g 0 0 112.0 1737.0 1.0 0.0 0.0 2.0 0.0 320.0 0.0 75.0 1873.0 230.0 0.0 2.0 t 0 0 1373.0 0.0 0.0 2.0 0.0 2.0 73.0 8.0 2.0 1699.0 218.0 362.0 6.0 1.0

MA0006.1_rc_shift6 (Ahr::Arnt_rc)
; oligos_6nt_mkv3_m47 versus MA0006.1_rc (Ahr::Arnt_rc); m=6/6; ncol2=6; w=6; offset=3; strand=R; shift=6; score=0.44526; ------CACGCr---- ; cor=; Ncor= a 0 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 11.0 0 0 0 0 c 0 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 2.0 0 0 0 0 g 0 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 8.0 0 0 0 0 t 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 3.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m37_shift3 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m37_shift3 (oligos_8nt_mkv5_m37oligos_8nt_mkv5_m37)
; oligos_8nt_mkv5_m37 (oligos_8nt_mkv5_m37oligos_8nt_mkv5_m37); m=0 (reference); ncol1=12; shift=3; ncol=15; ---ssTGACCACAgs ; Alignment reference a 0 0 0 52 49 0 25 225 5 3 218 2 218 42 52 c 0 0 0 66 83 11 4 1 223 210 3 223 1 42 65 g 0 0 0 58 69 2 190 3 1 7 4 1 11 107 73 t 0 0 0 54 29 217 11 1 1 10 5 4 0 39 40

MA1632.1_rc_shift3 (ATF2_rc)
; oligos_8nt_mkv5_m37 versus MA1632.1_rc (ATF2_rc); m=1/8; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.648529; ---raTGACvTCATy ; cor=; Ncor= a 0 0 0 18336.0 36321.0 509.0 909.0 57832.0 261.0 18166.0 975.0 2498.0 57651.0 1438.0 11021.0 c 0 0 0 11553.0 5971.0 768.0 649.0 283.0 56882.0 23207.0 262.0 55318.0 328.0 6229.0 18924.0 g 0 0 0 15785.0 14153.0 218.0 53464.0 316.0 886.0 16970.0 396.0 408.0 899.0 3145.0 10292.0 t 0 0 0 13720.0 2949.0 57899.0 4372.0 963.0 1365.0 1051.0 57761.0 1170.0 516.0 48582.0 19157.0

MA0002.2_rc_shift5 (RUNX1_rc)
; oligos_8nt_mkv5_m37 versus MA0002.2_rc (RUNX1_rc); m=2/8; ncol2=11; w=10; offset=2; strand=R; shift=5; score=0.630708; -----waaCCACAra ; cor=; Ncor= a 0 0 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 c 0 0 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 g 0 0 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 t 0 0 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0

MA0684.2_shift4 (RUNX3)
; oligos_8nt_mkv5_m37 versus MA0684.2 (RUNX3); m=3/8; ncol2=12; w=11; offset=1; strand=D; shift=4; score=0.607323; ----awAACCTCAaw ; cor=; Ncor= a 0 0 0 0 7768.0 9558.0 19136.0 26243.0 427.0 495.0 6357.0 611.0 26121.0 16137.0 8778.0 c 0 0 0 0 6083.0 5007.0 2662.0 315.0 26293.0 26208.0 419.0 26015.0 414.0 3077.0 5994.0 g 0 0 0 0 6685.0 3547.0 3500.0 431.0 198.0 385.0 1911.0 390.0 338.0 4696.0 5642.0 t 0 0 0 0 6841.0 9265.0 2079.0 388.0 459.0 289.0 18690.0 361.0 504.0 3467.0 6963.0

MA1535.1_rc_shift4 (NR2C1_rc)
; oligos_8nt_mkv5_m37 versus MA1535.1_rc (NR2C1_rc); m=4/8; ncol2=9; w=9; offset=1; strand=R; shift=4; score=0.543717; ----rTGACCyyk-- ; cor=; Ncor= a 0 0 0 0 2499.0 0.0 0.0 9622.0 0.0 297.0 55.0 1316.0 2225.0 0 0 c 0 0 0 0 2039.0 1716.0 321.0 271.0 9622.0 9622.0 4756.0 5587.0 1997.0 0 0 g 0 0 0 0 2786.0 0.0 9622.0 0.0 0.0 0.0 227.0 1225.0 2848.0 0 0 t 0 0 0 0 2298.0 9622.0 0.0 0.0 0.0 0.0 4866.0 4035.0 2552.0 0 0

MA0511.2_shift5 (RUNX2)
; oligos_8nt_mkv5_m37 versus MA0511.2 (RUNX2); m=5/8; ncol2=9; w=9; offset=2; strand=D; shift=5; score=0.537274; -----wAACCRCAa- ; cor=; Ncor= a 0 0 0 0 0 3872.0 6621.0 6621.0 0.0 0.0 1914.0 0.0 6621.0 4202.0 0 c 0 0 0 0 0 1092.0 556.0 325.0 6621.0 6621.0 36.0 6621.0 476.0 677.0 0 g 0 0 0 0 0 326.0 1215.0 0.0 0.0 0.0 4707.0 0.0 458.0 1134.0 0 t 0 0 0 0 0 2748.0 582.0 0.0 0.0 0.0 120.0 0.0 191.0 607.0 0

MA1536.1_rc_shift4 (NR2C2(var.2)_rc)
; oligos_8nt_mkv5_m37 versus MA1536.1_rc (NR2C2(var.2)_rc); m=6/8; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.484241; ----dYGACCyy--- ; cor=; Ncor= a 0 0 0 0 5122.0 0.0 4406.0 18628.0 4790.0 1341.0 0.0 2861.0 0 0 0 c 0 0 0 0 3684.0 6639.0 1643.0 1588.0 18628.0 18628.0 8395.0 6420.0 0 0 0 g 0 0 0 0 4757.0 0.0 18628.0 0.0 0.0 236.0 719.0 3111.0 0 0 0 t 0 0 0 0 5065.0 18628.0 0.0 0.0 0.0 0.0 10232.0 6236.0 0 0 0

MA0014.3_shift0 (PAX5)
; oligos_8nt_mkv5_m37 versus MA0014.3 (PAX5); m=7/8; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.431398; rrGCGTGACCmb--- ; cor=; Ncor= a 540.0 625.0 18.0 18.0 111.0 94.0 16.0 1243.0 32.0 69.0 377.0 263.0 0 0 0 c 179.0 148.0 151.0 1276.0 35.0 88.0 37.0 39.0 1305.0 1081.0 405.0 403.0 0 0 0 g 578.0 354.0 1231.0 34.0 1243.0 30.0 1355.0 70.0 57.0 118.0 312.0 359.0 0 0 0 t 115.0 285.0 12.0 84.0 23.0 1200.0 4.0 60.0 18.0 144.0 318.0 387.0 0 0 0

MA0067.1_rc_shift2 (Pax2_rc)
; oligos_8nt_mkv5_m37 versus MA0067.1_rc (Pax2_rc); m=8/8; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.407193; --vmrTGAcw----- ; cor=; Ncor= a 0 0 8.0 10.0 11.0 1.0 2.0 26.0 2.0 9.0 0 0 0 0 0 c 0 0 11.0 19.0 1.0 3.0 1.0 0.0 21.0 5.0 0 0 0 0 0 g 0 0 11.0 0.0 17.0 1.0 28.0 2.0 1.0 7.0 0 0 0 0 0 t 0 0 1.0 2.0 2.0 26.0 0.0 3.0 7.0 10.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m31_shift4 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m31_shift4 (oligos_7nt_mkv4_m31oligos_7nt_mkv4_m31)
; oligos_7nt_mkv4_m31 (oligos_7nt_mkv4_m31oligos_7nt_mkv4_m31); m=0 (reference); ncol1=12; shift=4; ncol=18; ----rrAAGCCACAsc-- ; Alignment reference a 0 0 0 0 84 78 277 277 22 5 1 284 5 224 58 62 0 0 c 0 0 0 0 70 68 0 6 4 272 275 0 279 30 77 108 0 0 g 0 0 0 0 81 79 4 1 250 5 10 2 2 20 101 63 0 0 t 0 0 0 0 53 63 7 4 12 6 2 2 2 14 52 55 0 0

MA0002.2_rc_shift6 (RUNX1_rc)
; oligos_7nt_mkv4_m31 versus MA0002.2_rc (RUNX1_rc); m=1/6; ncol2=11; w=10; offset=2; strand=R; shift=6; score=0.647567; ------waaCCACAram- ; cor=; Ncor= a 0 0 0 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 c 0 0 0 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 g 0 0 0 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 t 0 0 0 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0

MA0479.1_shift3 (FOXH1)
; oligos_7nt_mkv4_m31 versus MA0479.1 (FOXH1); m=2/6; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.615621; ---ybsAATMCACA---- ; cor=; Ncor= a 0 0 0 939.0 1578.0 973.0 8211.0 7547.0 0.0 2374.0 1414.0 8211.0 0.0 7138.0 0 0 0 0 c 0 0 0 2840.0 2333.0 3261.0 0.0 0.0 0.0 5773.0 6797.0 0.0 8211.0 0.0 0 0 0 0 g 0 0 0 1490.0 2137.0 3156.0 0.0 229.0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 2942.0 2163.0 821.0 0.0 435.0 8211.0 64.0 0.0 0.0 0.0 1073.0 0 0 0 0

MA1599.1_shift0 (ZNF682)
; oligos_7nt_mkv4_m31 versus MA1599.1 (ZNF682); m=3/6; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.531418; crGGCyAAGCCCCwrt-- ; cor=; Ncor= a 205.0 304.0 110.0 103.0 100.0 48.0 953.0 999.0 6.0 13.0 5.0 7.0 66.0 367.0 324.0 192.0 0 0 c 423.0 234.0 85.0 42.0 795.0 597.0 72.0 31.0 7.0 999.0 1033.0 1034.0 896.0 117.0 254.0 260.0 0 0 g 214.0 349.0 774.0 877.0 105.0 55.0 20.0 22.0 1038.0 13.0 9.0 10.0 32.0 118.0 300.0 194.0 0 0 t 216.0 171.0 89.0 36.0 58.0 358.0 13.0 6.0 7.0 33.0 11.0 7.0 64.0 456.0 180.0 412.0 0 0

MA0493.1_shift7 (Klf1)
; oligos_7nt_mkv4_m31 versus MA0493.1 (Klf1); m=4/6; ncol2=11; w=9; offset=3; strand=D; shift=7; score=0.472014; -------rrCCACACCCw ; cor=; Ncor= a 0 0 0 0 0 0 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 c 0 0 0 0 0 0 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 g 0 0 0 0 0 0 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0

MA1511.1_shift8 (KLF10)
; oligos_7nt_mkv4_m31 versus MA1511.1 (KLF10); m=5/6; ncol2=11; w=8; offset=4; strand=D; shift=8; score=0.41699; --------gmCACrCCCm ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 c 0 0 0 0 0 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 g 0 0 0 0 0 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 t 0 0 0 0 0 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0

MA1107.2_shift6 (KLF9)
; oligos_7nt_mkv4_m31 versus MA1107.2 (KLF9); m=6/6; ncol2=16; w=10; offset=2; strand=D; shift=6; score=0.400965; ------crgCCACACCCA ; cor=; Ncor= a 0 0 0 0 0 0 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 c 0 0 0 0 0 0 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 g 0 0 0 0 0 0 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 t 0 0 0 0 0 0 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0

One-to-n matrix alignment; reference matrix: local_words_7nt_m12_shift0 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m12_shift0 (local_words_7nt_m12local_words_7nt_m12)
; local_words_7nt_m12 (local_words_7nt_m12local_words_7nt_m12); m=0 (reference); ncol1=17; shift=0; ncol=17; svgCAGCAGCTGTCcyb ; Alignment reference a 78 112 44 40 310 17 0 391 2 4 1 1 2 13 63 62 73 c 128 110 66 295 22 15 408 1 7 395 0 1 19 328 242 154 124 g 115 116 269 51 16 371 1 2 399 6 0 404 16 33 53 90 107 t 88 71 30 23 61 6 0 15 1 4 408 3 372 35 51 103 105

MA0499.2_shift3 (MYOD1)
; local_words_7nt_m12 versus MA0499.2 (MYOD1); m=1/20; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.644183; ---cwgCACCTGTymy- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA1485.1_shift2 (FERD3L)
; local_words_7nt_m12 versus MA1485.1 (FERD3L); m=2/20; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.632743; --GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; local_words_7nt_m12 versus MA0832.1_rc (Tcf21_rc); m=3/20; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.626959; --ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA0500.2_shift3 (MYOG)
; local_words_7nt_m12 versus MA0500.2 (MYOG); m=4/20; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.598543; ---sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_7nt_m12 versus MA0521.1_rc (Tcf12_rc); m=5/20; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.58088; ---cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; local_words_7nt_m12 versus MA1641.1_rc (MYF5_rc); m=6/20; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.580661; ---gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_7nt_m12 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/20; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.575135; ---rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA0745.2_shift3 (SNAI2)
; local_words_7nt_m12 versus MA0745.2 (SNAI2); m=8/20; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.555756; ---aygCACCTGTmry- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA1467.1_shift4 (ATOH1(var.2))
; local_words_7nt_m12 versus MA1467.1 (ATOH1(var.2)); m=9/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.520042; ----AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_7nt_m12 versus MA0816.1_rc (Ascl2_rc); m=10/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.51228; ----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_7nt_m12 versus MA1472.1 (BHLHA15(var.2)); m=11/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.507611; ----avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_7nt_m12 versus MA1100.2 (ASCL1); m=12/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.500068; ----rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_7nt_m12 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=13/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.493433; ----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; local_words_7nt_m12 versus MA0665.1_rc (MSC_rc); m=14/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.483947; ----AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; local_words_7nt_m12 versus MA0691.1_rc (TFAP4_rc); m=15/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.468086; ----AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_7nt_m12 versus MA0048.2_rc (NHLH1_rc); m=16/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.463255; ----mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; local_words_7nt_m12 versus MA1648.1_rc (TCF12(var.2)_rc); m=17/20; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.461819; ---srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0

MA0667.1_shift4 (MYF6)
; local_words_7nt_m12 versus MA0667.1 (MYF6); m=18/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.458634; ----AACArCTGTY--- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; local_words_7nt_m12 versus MA0522.3_rc (TCF3_rc); m=19/20; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.457038; ---ssGCAGGTGbs--- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0

MA0820.1_shift4 (FIGLA)
; local_words_7nt_m12 versus MA0820.1 (FIGLA); m=20/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.420801; ----wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m18_shift0 ; 19 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m18_shift0 (local_words_8nt_m18local_words_8nt_m18)
; local_words_8nt_m18 (local_words_8nt_m18local_words_8nt_m18); m=0 (reference); ncol1=17; shift=0; ncol=17; svGCAGCAGCTGTCgsb ; Alignment reference a 46 73 26 18 230 6 1 250 1 0 1 0 3 7 62 35 49 c 88 71 27 209 14 8 265 1 8 261 0 0 12 217 61 86 82 g 80 70 200 32 6 250 1 1 256 3 0 265 8 23 96 80 68 t 53 53 14 8 17 3 0 15 2 3 266 2 244 20 48 66 68

MA1485.1_shift2 (FERD3L)
; local_words_8nt_m18 versus MA1485.1 (FERD3L); m=1/18; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.643713; --GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0499.2_shift3 (MYOD1)
; local_words_8nt_m18 versus MA0499.2 (MYOD1); m=2/18; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.636686; ---cwgCACCTGTymy- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; local_words_8nt_m18 versus MA0832.1_rc (Tcf21_rc); m=3/18; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.632853; --ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA0500.2_shift3 (MYOG)
; local_words_8nt_m18 versus MA0500.2 (MYOG); m=4/18; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.593631; ---sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; local_words_8nt_m18 versus MA1641.1_rc (MYF5_rc); m=5/18; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.570901; ---gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_8nt_m18 versus MA0521.1_rc (Tcf12_rc); m=6/18; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.569445; ---cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_8nt_m18 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/18; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.565942; ---rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA0745.2_shift3 (SNAI2)
; local_words_8nt_m18 versus MA0745.2 (SNAI2); m=8/18; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.551152; ---aygCACCTGTmry- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA1467.1_shift4 (ATOH1(var.2))
; local_words_8nt_m18 versus MA1467.1 (ATOH1(var.2)); m=9/18; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.516694; ----AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_8nt_m18 versus MA0816.1_rc (Ascl2_rc); m=10/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.507703; ----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_8nt_m18 versus MA1472.1 (BHLHA15(var.2)); m=11/18; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.501696; ----avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_8nt_m18 versus MA1100.2 (ASCL1); m=12/18; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.493098; ----rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_8nt_m18 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=13/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.483797; ----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; local_words_8nt_m18 versus MA0665.1_rc (MSC_rc); m=14/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.481295; ----AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; local_words_8nt_m18 versus MA0691.1_rc (TFAP4_rc); m=15/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.464193; ----AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_8nt_m18 versus MA0048.2_rc (NHLH1_rc); m=16/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.458573; ----mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA0667.1_shift4 (MYF6)
; local_words_8nt_m18 versus MA0667.1 (MYF6); m=17/18; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.456703; ----AACArCTGTY--- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA0820.1_shift4 (FIGLA)
; local_words_8nt_m18 versus MA0820.1 (FIGLA); m=18/18; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.416253; ----wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m39_shift5 ; 17 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m39_shift5 (dyads_m39dyads_m39)
; dyads_m39 (dyads_m39dyads_m39); m=0 (reference); ncol1=11; shift=5; ncol=17; -----gsTGACAGAkr- ; Alignment reference a 0 0 0 0 0 30 27 0 2 135 0 127 2 135 28 40 0 c 0 0 0 0 0 23 49 1 0 0 134 4 0 0 26 21 0 g 0 0 0 0 0 60 47 3 129 0 0 4 132 0 39 54 0 t 0 0 0 0 0 22 12 131 4 0 1 0 1 0 42 20 0

MA0513.1_rc_shift4 (SMAD2::SMAD3::SMAD4_rc)
; dyads_m39 versus MA0513.1_rc (SMAD2::SMAD3::SMAD4_rc); m=1/16; ncol2=13; w=11; offset=-1; strand=R; shift=4; score=0.643155; ----agGTGmsAGACag ; cor=; Ncor= a 0 0 0 0 540.0 152.0 0.0 97.0 0.0 283.0 23.0 899.0 0.0 718.0 0.0 594.0 133.0 c 0 0 0 0 35.0 47.0 133.0 18.0 3.0 280.0 539.0 0.0 0.0 103.0 877.0 34.0 168.0 g 0 0 0 0 214.0 583.0 736.0 19.0 896.0 125.0 231.0 0.0 899.0 45.0 8.0 75.0 432.0 t 0 0 0 0 110.0 117.0 30.0 765.0 0.0 211.0 106.0 0.0 0.0 33.0 14.0 196.0 166.0

MA0774.1_shift6 (MEIS2)
; dyads_m39 versus MA0774.1 (MEIS2); m=2/16; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.606147; ------tTGACAGs--- ; cor=; Ncor= a 0 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 c 0 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 g 0 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 t 0 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0

MA0775.1_shift6 (MEIS3)
; dyads_m39 versus MA0775.1 (MEIS3); m=3/16; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.599616; ------wTGACAgs--- ; cor=; Ncor= a 0 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 c 0 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 g 0 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 t 0 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0

MA0498.2_shift6 (MEIS1)
; dyads_m39 versus MA0498.2 (MEIS1); m=4/16; ncol2=7; w=7; offset=1; strand=D; shift=6; score=0.587257; ------wTGACAg---- ; cor=; Ncor= a 0 0 0 0 0 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 c 0 0 0 0 0 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 g 0 0 0 0 0 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 t 0 0 0 0 0 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0

MA0782.2_shift1 (PKNOX1)
; dyads_m39 versus MA0782.2 (PKNOX1); m=5/16; ncol2=15; w=11; offset=-4; strand=D; shift=1; score=0.581449; -twTGAgTGACAGctr- ; cor=; Ncor= a 0 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 c 0 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 g 0 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 t 0 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0

MA1642.1_shift6 (NEUROG2(var.2))
; dyads_m39 versus MA1642.1 (NEUROG2(var.2)); m=6/16; ncol2=13; w=10; offset=1; strand=D; shift=6; score=0.504735; ------rrraCAGATGG ; cor=; Ncor= a 0 0 0 0 0 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 c 0 0 0 0 0 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 g 0 0 0 0 0 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 t 0 0 0 0 0 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0

MA0797.1_shift7 (TGIF2)
; dyads_m39 versus MA0797.1 (TGIF2); m=7/16; ncol2=12; w=9; offset=2; strand=D; shift=7; score=0.499453; -------TGACAGsTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 c 0 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 g 0 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 t 0 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0

MA1114.1_shift0 (PBX3)
; dyads_m39 versus MA1114.1 (PBX3); m=8/16; ncol2=17; w=11; offset=-5; strand=D; shift=0; score=0.496659; gkbTGAGTGACAGgcrs ; cor=; Ncor= a 1595.0 1510.0 1320.0 596.0 228.0 6426.0 335.0 247.0 146.0 6164.0 150.0 6091.0 369.0 884.0 1251.0 1869.0 1495.0 c 1711.0 1724.0 1849.0 225.0 227.0 125.0 788.0 199.0 242.0 108.0 6524.0 129.0 412.0 1377.0 2654.0 1619.0 1801.0 g 2192.0 1934.0 1928.0 503.0 6406.0 214.0 4929.0 285.0 6550.0 604.0 209.0 425.0 5691.0 4077.0 1591.0 2068.0 2217.0 t 1523.0 1853.0 1924.0 5697.0 160.0 256.0 969.0 6290.0 83.0 145.0 138.0 376.0 549.0 683.0 1525.0 1465.0 1508.0

MA0783.1_shift7 (PKNOX2)
; dyads_m39 versus MA0783.1 (PKNOX2); m=9/16; ncol2=12; w=9; offset=2; strand=D; shift=7; score=0.492154; -------TGACAGsTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 c 0 0 0 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 g 0 0 0 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 t 0 0 0 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0

MA0796.1_shift7 (TGIF1)
; dyads_m39 versus MA0796.1 (TGIF1); m=10/16; ncol2=12; w=9; offset=2; strand=D; shift=7; score=0.49028; -------TGACAGCTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 c 0 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 g 0 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 t 0 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0

MA1572.1_rc_shift7 (TGIF2LY_rc)
; dyads_m39 versus MA1572.1_rc (TGIF2LY_rc); m=11/16; ncol2=12; w=9; offset=2; strand=R; shift=7; score=0.480944; -------TGACAgcTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 c 0 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 g 0 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 t 0 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0

MA1571.1_shift7 (TGIF2LX)
; dyads_m39 versus MA1571.1 (TGIF2LX); m=12/16; ncol2=12; w=9; offset=2; strand=D; shift=7; score=0.479173; -------TGACAgcTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 c 0 0 0 0 0 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 g 0 0 0 0 0 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 t 0 0 0 0 0 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0

MA0067.1_rc_shift4 (Pax2_rc)
; dyads_m39 versus MA0067.1_rc (Pax2_rc); m=13/16; ncol2=8; w=7; offset=-1; strand=R; shift=4; score=0.455749; ----vmrTGAcw----- ; cor=; Ncor= a 0 0 0 0 8.0 10.0 11.0 1.0 2.0 26.0 2.0 9.0 0 0 0 0 0 c 0 0 0 0 11.0 19.0 1.0 3.0 1.0 0.0 21.0 5.0 0 0 0 0 0 g 0 0 0 0 11.0 0.0 17.0 1.0 28.0 2.0 1.0 7.0 0 0 0 0 0 t 0 0 0 0 1.0 2.0 2.0 26.0 0.0 3.0 7.0 10.0 0 0 0 0 0

MA1638.1_shift8 (HAND2)
; dyads_m39 versus MA1638.1 (HAND2); m=14/16; ncol2=10; w=8; offset=3; strand=D; shift=8; score=0.44521; --------amCAGATGb ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 c 0 0 0 0 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 g 0 0 0 0 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 t 0 0 0 0 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0

MA1109.1_shift7 (NEUROD1)
; dyads_m39 versus MA1109.1 (NEUROD1); m=15/16; ncol2=13; w=9; offset=2; strand=D; shift=7; score=0.441754; -------graCAGATGG ; cor=; Ncor= a 0 0 0 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 c 0 0 0 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 g 0 0 0 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 t 0 0 0 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0

MA1618.1_shift7 (Ptf1a)
; dyads_m39 versus MA1618.1 (Ptf1a); m=16/16; ncol2=13; w=9; offset=2; strand=D; shift=7; score=0.424692; -------dmaCAGATGt ; cor=; Ncor= a 0 0 0 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 c 0 0 0 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 g 0 0 0 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 t 0 0 0 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0

One-to-n matrix alignment; reference matrix: local_words_7nt_m15_shift0 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m15_shift0 (local_words_7nt_m15local_words_7nt_m15)
; local_words_7nt_m15 (local_words_7nt_m15local_words_7nt_m15); m=0 (reference); ncol1=17; shift=0; ncol=17; rvcGACAGCTGCTGCbs ; Alignment reference a 100 100 64 41 349 2 384 3 2 19 0 4 35 20 20 75 73 c 96 116 152 52 14 383 0 4 374 2 1 366 14 55 272 97 112 g 123 119 92 280 19 0 0 378 8 3 383 9 25 280 53 98 127 t 66 50 77 12 3 0 1 0 1 361 1 6 311 30 40 115 73

MA1485.1_rc_shift1 (FERD3L_rc)
; local_words_7nt_m15 versus MA1485.1_rc (FERD3L_rc); m=1/20; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.643104; -GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0499.2_rc_shift1 (MYOD1_rc)
; local_words_7nt_m15 versus MA0499.2_rc (MYOD1_rc); m=2/20; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.641477; -rkrACAGGTGcwg--- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0832.1_shift1 (Tcf21)
; local_words_7nt_m15 versus MA0832.1 (Tcf21); m=3/20; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.640972; -ryAACAGCTGTTry-- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0500.2_rc_shift2 (MYOG_rc)
; local_words_7nt_m15 versus MA0500.2_rc (MYOG_rc); m=4/20; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.604996; --sarCAGCTGyts--- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1641.1_shift2 (MYF5)
; local_words_7nt_m15 versus MA1641.1 (MYF5); m=5/20; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.581016; --gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA0521.1_shift3 (Tcf12)
; local_words_7nt_m15 versus MA0521.1 (Tcf12); m=6/20; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.578325; ---rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; local_words_7nt_m15 versus MA1619.1 (Ptf1a(var.2)); m=7/20; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.577328; --rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0745.2_rc_shift1 (SNAI2_rc)
; local_words_7nt_m15 versus MA0745.2_rc (SNAI2_rc); m=8/20; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.55836; -rykACAGGTGcrt--- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0

MA0816.1_shift3 (Ascl2)
; local_words_7nt_m15 versus MA0816.1 (Ascl2); m=9/20; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.515346; ---arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; local_words_7nt_m15 versus MA1467.1_rc (ATOH1(var.2)_rc); m=10/20; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.515336; ---RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; local_words_7nt_m15 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/20; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.507267; ---rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; local_words_7nt_m15 versus MA1100.2_rc (ASCL1_rc); m=12/20; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.499851; ---rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; local_words_7nt_m15 versus MA1635.1 (BHLHE22(var.2)); m=13/20; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.492686; ---csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA0665.1_shift3 (MSC)
; local_words_7nt_m15 versus MA0665.1 (MSC); m=14/20; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.484344; ---AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0048.2_shift3 (NHLH1)
; local_words_7nt_m15 versus MA0048.2 (NHLH1); m=15/20; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.470148; ---cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA0691.1_shift3 (TFAP4)
; local_words_7nt_m15 versus MA0691.1 (TFAP4); m=16/20; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.469962; ---AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA1648.1_shift3 (TCF12(var.2))
; local_words_7nt_m15 versus MA1648.1 (TCF12(var.2)); m=17/20; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.46316; ---ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift3 (TCF3)
; local_words_7nt_m15 versus MA0522.3 (TCF3); m=18/20; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.458375; ---svCACCTGCss--- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; local_words_7nt_m15 versus MA0667.1_rc (MYF6_rc); m=19/20; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.457979; ---RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; local_words_7nt_m15 versus MA0820.1_rc (FIGLA_rc); m=20/20; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.420061; ---wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_7nt_m18_shift0 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m18_shift0 (local_words_7nt_m18local_words_7nt_m18)
; local_words_7nt_m18 (local_words_7nt_m18local_words_7nt_m18); m=0 (reference); ncol1=18; shift=0; ncol=18; cvgCAGCAGCTGTTCcys ; Alignment reference a 76 98 46 20 292 16 0 342 2 1 2 3 4 15 23 49 73 76 c 124 96 51 273 14 12 363 0 8 356 1 0 32 57 254 193 119 95 g 90 100 235 52 18 330 0 1 351 2 0 360 7 43 57 50 74 134 t 73 69 31 18 39 5 0 20 2 4 360 0 320 248 29 71 97 58

MA0832.1_rc_shift2 (Tcf21_rc)
; local_words_7nt_m18 versus MA0832.1_rc (Tcf21_rc); m=1/20; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.643007; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA1485.1_shift2 (FERD3L)
; local_words_7nt_m18 versus MA1485.1 (FERD3L); m=2/20; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.619996; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0499.2_shift3 (MYOD1)
; local_words_7nt_m18 versus MA0499.2 (MYOD1); m=3/20; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.579379; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA0500.2_shift3 (MYOG)
; local_words_7nt_m18 versus MA0500.2 (MYOG); m=4/20; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.575998; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_7nt_m18 versus MA0521.1_rc (Tcf12_rc); m=5/20; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.55609; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; local_words_7nt_m18 versus MA1641.1_rc (MYF5_rc); m=6/20; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.549162; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_7nt_m18 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/20; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.545122; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_7nt_m18 versus MA0816.1_rc (Ascl2_rc); m=8/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.521889; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA1655.1_rc_shift5 (ZNF341_rc)
; local_words_7nt_m18 versus MA1655.1_rc (ZNF341_rc); m=9/20; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.51987; -----stgGCTGTTCyc- ; cor=; Ncor= a 0 0 0 0 0 3536.0 4320.0 2411.0 228.0 229.0 234.0 581.0 241.0 186.0 1442.0 2599.0 4408.0 0 c 0 0 0 0 0 5691.0 4672.0 2289.0 270.0 17972.0 468.0 1033.0 576.0 513.0 13739.0 8832.0 5798.0 0 g 0 0 0 0 0 5745.0 4431.0 10946.0 18003.0 359.0 399.0 16813.0 211.0 955.0 2043.0 2180.0 4256.0 0 t 0 0 0 0 0 3756.0 5305.0 3082.0 227.0 168.0 17627.0 301.0 17700.0 17074.0 1504.0 5117.0 4266.0 0

MA0665.1_rc_shift4 (MSC_rc)
; local_words_7nt_m18 versus MA0665.1_rc (MSC_rc); m=10/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.493202; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_7nt_m18 versus MA1472.1 (BHLHA15(var.2)); m=11/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.493078; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA0091.1_rc_shift4 (TAL1::TCF3_rc)
; local_words_7nt_m18 versus MA0091.1_rc (TAL1::TCF3_rc); m=12/20; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.492485; ----AmCAKMTGkTck-- ; cor=; Ncor= a 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 0 0 c 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 0 0 g 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 0 0 t 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; local_words_7nt_m18 versus MA0691.1_rc (TFAP4_rc); m=13/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.488403; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; local_words_7nt_m18 versus MA1467.1_rc (ATOH1(var.2)_rc); m=14/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.474332; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_7nt_m18 versus MA1100.2 (ASCL1); m=15/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.473986; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_7nt_m18 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=16/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.46937; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA0667.1_shift4 (MYF6)
; local_words_7nt_m18 versus MA0667.1 (MYF6); m=17/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.46501; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_7nt_m18 versus MA0048.2_rc (NHLH1_rc); m=18/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.458648; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; local_words_7nt_m18 versus MA1648.1_rc (TCF12(var.2)_rc); m=19/20; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.433146; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; local_words_7nt_m18 versus MA0820.1 (FIGLA); m=20/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.419996; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_7nt_m6_shift0 ; 22 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m6_shift0 (local_words_7nt_m6local_words_7nt_m6)
; local_words_7nt_m6 (local_words_7nt_m6local_words_7nt_m6); m=0 (reference); ncol1=18; shift=0; ncol=18; srgGaACAGCTGCTGcbs ; Alignment reference a 58 97 72 29 248 323 0 363 4 2 20 0 5 39 18 31 69 73 c 135 76 50 57 43 7 363 0 3 354 1 0 333 18 52 236 101 92 g 97 119 194 257 60 32 0 1 358 8 0 366 12 14 276 53 98 124 t 76 74 50 23 15 4 3 2 1 2 345 0 16 295 20 46 98 77

MA0832.1_shift2 (Tcf21)
; local_words_7nt_m6 versus MA0832.1 (Tcf21); m=1/21; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.642595; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_7nt_m6 versus MA1485.1_rc (FERD3L_rc); m=2/21; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.619515; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; local_words_7nt_m6 versus MA0499.2_rc (MYOD1_rc); m=3/21; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.579581; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; local_words_7nt_m6 versus MA0500.2_rc (MYOG_rc); m=4/21; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.575702; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0521.1_shift4 (Tcf12)
; local_words_7nt_m6 versus MA0521.1 (Tcf12); m=5/21; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.55605; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1641.1_shift3 (MYF5)
; local_words_7nt_m6 versus MA1641.1 (MYF5); m=6/21; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.548965; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; local_words_7nt_m6 versus MA1619.1 (Ptf1a(var.2)); m=7/21; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.544888; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0816.1_shift4 (Ascl2)
; local_words_7nt_m6 versus MA0816.1 (Ascl2); m=8/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.521763; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1655.1_shift1 (ZNF341)
; local_words_7nt_m6 versus MA1655.1 (ZNF341); m=9/21; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.519436; -grGAACAGCcas----- ; cor=; Ncor= a 0 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 0 0 0 c 0 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 0 0 0 g 0 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 0 0 0 t 0 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0 0 0 0

MA0665.1_shift4 (MSC)
; local_words_7nt_m6 versus MA0665.1 (MSC); m=10/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.493175; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; local_words_7nt_m6 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.493121; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA0091.1_shift2 (TAL1::TCF3)
; local_words_7nt_m6 versus MA0091.1 (TAL1::TCF3); m=12/21; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.492278; --mgAmCAKMTGkT---- ; cor=; Ncor= a 0 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 c 0 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 g 0 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 t 0 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; local_words_7nt_m6 versus MA0691.1 (TFAP4); m=13/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.488148; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; local_words_7nt_m6 versus MA1467.1 (ATOH1(var.2)); m=14/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.474181; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; local_words_7nt_m6 versus MA1100.2_rc (ASCL1_rc); m=15/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.474167; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; local_words_7nt_m6 versus MA1635.1 (BHLHE22(var.2)); m=16/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.469348; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; local_words_7nt_m6 versus MA0667.1_rc (MYF6_rc); m=17/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.465012; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; local_words_7nt_m6 versus MA0048.2 (NHLH1); m=18/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.458562; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; local_words_7nt_m6 versus MA1648.1 (TCF12(var.2)); m=19/21; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.433692; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift4 (TCF3)
; local_words_7nt_m6 versus MA0522.3 (TCF3); m=20/21; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.428242; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0820.1_rc_shift4 (FIGLA_rc)
; local_words_7nt_m6 versus MA0820.1_rc (FIGLA_rc); m=21/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.419878; ----wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m4_shift0 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m4_shift0 (local_words_8nt_m4local_words_8nt_m4)
; local_words_8nt_m4 (local_words_8nt_m4local_words_8nt_m4); m=0 (reference); ncol1=18; shift=0; ncol=18; srgGAACAGCTGCTGcsg ; Alignment reference a 38 71 40 21 185 221 0 249 4 3 15 0 4 22 12 20 54 54 c 94 49 30 35 25 4 247 0 2 241 1 1 221 8 19 165 68 57 g 66 84 156 182 32 22 0 0 243 4 1 249 12 9 207 34 68 92 t 52 46 24 12 8 3 3 1 1 2 233 0 13 211 12 31 60 47

MA0832.1_shift2 (Tcf21)
; local_words_8nt_m4 versus MA0832.1 (Tcf21); m=1/19; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.641776; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_8nt_m4 versus MA1485.1_rc (FERD3L_rc); m=2/19; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.625044; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; local_words_8nt_m4 versus MA0500.2_rc (MYOG_rc); m=3/19; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.566734; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; local_words_8nt_m4 versus MA0499.2_rc (MYOD1_rc); m=4/19; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.566224; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0521.1_shift4 (Tcf12)
; local_words_8nt_m4 versus MA0521.1 (Tcf12); m=5/19; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.549538; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1641.1_shift3 (MYF5)
; local_words_8nt_m4 versus MA1641.1 (MYF5); m=6/19; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.540256; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; local_words_8nt_m4 versus MA1619.1 (Ptf1a(var.2)); m=7/19; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.535856; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1655.1_shift1 (ZNF341)
; local_words_8nt_m4 versus MA1655.1 (ZNF341); m=8/19; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.526728; -grGAACAGCcas----- ; cor=; Ncor= a 0 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 0 0 0 c 0 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 0 0 0 g 0 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 0 0 0 t 0 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0 0 0 0

MA0816.1_shift4 (Ascl2)
; local_words_8nt_m4 versus MA0816.1 (Ascl2); m=9/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.521081; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA0665.1_shift4 (MSC)
; local_words_8nt_m4 versus MA0665.1 (MSC); m=10/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.496208; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0091.1_shift2 (TAL1::TCF3)
; local_words_8nt_m4 versus MA0091.1 (TAL1::TCF3); m=11/19; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.494605; --mgAmCAKMTGkT---- ; cor=; Ncor= a 0 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 c 0 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 g 0 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 t 0 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; local_words_8nt_m4 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=12/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.491717; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; local_words_8nt_m4 versus MA0691.1 (TFAP4); m=13/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.491027; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; local_words_8nt_m4 versus MA1467.1 (ATOH1(var.2)); m=14/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.473656; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; local_words_8nt_m4 versus MA1100.2_rc (ASCL1_rc); m=15/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.468867; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; local_words_8nt_m4 versus MA0667.1_rc (MYF6_rc); m=16/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.468467; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; local_words_8nt_m4 versus MA1635.1 (BHLHE22(var.2)); m=17/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.464264; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; local_words_8nt_m4 versus MA0048.2 (NHLH1); m=18/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.453759; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA0820.1_rc_shift4 (FIGLA_rc)
; local_words_8nt_m4 versus MA0820.1_rc (FIGLA_rc); m=19/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.419545; ----wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m14_shift0 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m14_shift0 (local_words_8nt_m14local_words_8nt_m14)
; local_words_8nt_m14 (local_words_8nt_m14local_words_8nt_m14); m=0 (reference); ncol1=18; shift=0; ncol=18; csgCAGCAGCTGTTCcys ; Alignment reference a 47 60 31 12 211 13 0 233 2 1 1 3 3 8 12 24 46 52 c 92 68 34 207 9 12 249 1 4 243 0 0 22 32 182 156 84 66 g 57 68 165 19 8 221 1 1 241 2 0 247 4 25 35 30 49 94 t 54 54 20 12 22 4 0 15 3 4 249 0 221 185 21 40 71 38

MA0832.1_rc_shift2 (Tcf21_rc)
; local_words_8nt_m14 versus MA0832.1_rc (Tcf21_rc); m=1/19; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.641776; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA1485.1_shift2 (FERD3L)
; local_words_8nt_m14 versus MA1485.1 (FERD3L); m=2/19; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.625044; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0500.2_shift3 (MYOG)
; local_words_8nt_m14 versus MA0500.2 (MYOG); m=3/19; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.566734; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA0499.2_shift3 (MYOD1)
; local_words_8nt_m14 versus MA0499.2 (MYOD1); m=4/19; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.566224; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_8nt_m14 versus MA0521.1_rc (Tcf12_rc); m=5/19; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.549538; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; local_words_8nt_m14 versus MA1641.1_rc (MYF5_rc); m=6/19; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.540256; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_8nt_m14 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/19; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.535856; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1655.1_rc_shift5 (ZNF341_rc)
; local_words_8nt_m14 versus MA1655.1_rc (ZNF341_rc); m=8/19; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.526728; -----stgGCTGTTCyc- ; cor=; Ncor= a 0 0 0 0 0 3536.0 4320.0 2411.0 228.0 229.0 234.0 581.0 241.0 186.0 1442.0 2599.0 4408.0 0 c 0 0 0 0 0 5691.0 4672.0 2289.0 270.0 17972.0 468.0 1033.0 576.0 513.0 13739.0 8832.0 5798.0 0 g 0 0 0 0 0 5745.0 4431.0 10946.0 18003.0 359.0 399.0 16813.0 211.0 955.0 2043.0 2180.0 4256.0 0 t 0 0 0 0 0 3756.0 5305.0 3082.0 227.0 168.0 17627.0 301.0 17700.0 17074.0 1504.0 5117.0 4266.0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_8nt_m14 versus MA0816.1_rc (Ascl2_rc); m=9/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.521081; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; local_words_8nt_m14 versus MA0665.1_rc (MSC_rc); m=10/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.496208; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA0091.1_rc_shift4 (TAL1::TCF3_rc)
; local_words_8nt_m14 versus MA0091.1_rc (TAL1::TCF3_rc); m=11/19; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.494605; ----AmCAKMTGkTck-- ; cor=; Ncor= a 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 0 0 c 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 0 0 g 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 0 0 t 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_8nt_m14 versus MA1472.1 (BHLHA15(var.2)); m=12/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.491717; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; local_words_8nt_m14 versus MA0691.1_rc (TFAP4_rc); m=13/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.491027; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; local_words_8nt_m14 versus MA1467.1_rc (ATOH1(var.2)_rc); m=14/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.473656; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_8nt_m14 versus MA1100.2 (ASCL1); m=15/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.468867; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA0667.1_shift4 (MYF6)
; local_words_8nt_m14 versus MA0667.1 (MYF6); m=16/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.468467; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_8nt_m14 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=17/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.464264; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_8nt_m14 versus MA0048.2_rc (NHLH1_rc); m=18/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.453759; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA0820.1_shift4 (FIGLA)
; local_words_8nt_m14 versus MA0820.1 (FIGLA); m=19/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.419545; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m9_shift4 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m9_shift4 (oligos_8nt_mkv5_m9oligos_8nt_mkv5_m9)
; oligos_8nt_mkv5_m9 (oligos_8nt_mkv5_m9oligos_8nt_mkv5_m9); m=0 (reference); ncol1=12; shift=4; ncol=16; ----scCGCCrCCGcs ; Alignment reference a 0 0 0 0 33 27 4 6 3 3 135 4 0 1 21 40 c 0 0 0 0 79 157 253 5 256 260 37 248 258 13 160 129 g 0 0 0 0 131 57 13 258 6 3 83 15 10 253 65 68 t 0 0 0 0 27 29 0 1 5 4 15 3 2 3 24 33

MA0472.2_shift5 (EGR2)
; oligos_8nt_mkv5_m9 versus MA0472.2 (EGR2); m=1/6; ncol2=11; w=11; offset=1; strand=D; shift=5; score=0.641756; -----mCGCCCACGCa ; cor=; Ncor= a 0 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 c 0 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 g 0 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 t 0 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0

MA0162.4_shift3 (EGR1)
; oligos_8nt_mkv5_m9 versus MA0162.4 (EGR1); m=2/6; ncol2=14; w=12; offset=-1; strand=D; shift=3; score=0.625293; ---ccmCGCCCACgCm ; cor=; Ncor= a 0 0 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 c 0 0 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 g 0 0 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 t 0 0 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0

MA0732.1_shift3 (EGR3)
; oligos_8nt_mkv5_m9 versus MA0732.1 (EGR3); m=3/6; ncol2=15; w=12; offset=-1; strand=D; shift=3; score=0.579324; ---yhmCGCCCMCGCA ; cor=; Ncor= a 0 0 0 337.0 444.0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 c 0 0 0 645.0 485.0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 g 0 0 0 278.0 191.0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 t 0 0 0 470.0 540.0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0

MA1513.1_shift2 (KLF15)
; oligos_8nt_mkv5_m9 versus MA1513.1 (KLF15); m=4/6; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.472182; --scCCCGCCCcs--- ; cor=; Ncor= a 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 c 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 g 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 t 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0

MA0741.1_shift2 (KLF16)
; oligos_8nt_mkv5_m9 versus MA0741.1 (KLF16); m=5/6; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.463016; --gmCMCgCCCMC--- ; cor=; Ncor= a 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 c 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 g 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 t 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0

MA0471.2_rc_shift0 (E2F6_rc)
; oligos_8nt_mkv5_m9 versus MA0471.2_rc (E2F6_rc); m=6/6; ncol2=13; w=9; offset=-4; strand=R; shift=0; score=0.419728; syTTCCCGCCyyc--- ; cor=; Ncor= a 5600.0 4163.0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 6897.0 5665.0 5369.0 0 0 0 c 11405.0 12530.0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 11562.0 11649.0 12358.0 0 0 0 g 8477.0 7410.0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 5102.0 7405.0 8075.0 0 0 0 t 7616.0 8995.0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 9537.0 8379.0 7296.0 0 0 0

One-to-n matrix alignment; reference matrix: positions_8nt_m3_shift1 ; 15 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_8nt_m3_shift1 (positions_8nt_m3positions_8nt_m3)
; positions_8nt_m3 (positions_8nt_m3positions_8nt_m3); m=0 (reference); ncol1=16; shift=1; ncol=17; -vgCAGCAGCTGCTGcb ; Alignment reference a 0 146 121 18 462 24 1 505 1 1 46 0 5 64 21 71 95 c 0 151 135 470 20 9 552 2 4 548 1 1 516 8 45 227 162 g 0 162 227 45 8 516 1 1 548 4 2 552 9 20 470 135 151 t 0 95 71 21 64 5 0 46 1 1 505 1 24 462 18 121 146

MA0832.1_rc_shift2 (Tcf21_rc)
; positions_8nt_m3 versus MA0832.1_rc (Tcf21_rc); m=1/14; ncol2=14; w=14; offset=1; strand=R; shift=2; score=0.640889; --ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_8nt_m3 versus MA0500.2_rc (MYOG_rc); m=2/14; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.637729; ---sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; positions_8nt_m3 versus MA0816.1_rc (Ascl2_rc); m=3/14; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.590429; ----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; positions_8nt_m3 versus MA1631.1 (ASCL1(var.2)); m=4/14; ncol2=13; w=13; offset=2; strand=D; shift=3; score=0.579204; ---cdgCACCTGCysc- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; positions_8nt_m3 versus MA0521.1_rc (Tcf12_rc); m=5/14; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.563002; ---cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA0048.2_shift4 (NHLH1)
; positions_8nt_m3 versus MA0048.2 (NHLH1); m=6/14; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.550612; ----cGCAGCTGCk--- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0

MA1100.2_shift4 (ASCL1)
; positions_8nt_m3 versus MA1100.2 (ASCL1); m=7/14; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.547496; ----rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; positions_8nt_m3 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=8/14; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.528595; ---rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; positions_8nt_m3 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=9/14; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.522971; ----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; positions_8nt_m3 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=10/14; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.51593; ----rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; positions_8nt_m3 versus MA0691.1_rc (TFAP4_rc); m=11/14; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.495183; ----AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA0665.1_shift4 (MSC)
; positions_8nt_m3 versus MA0665.1 (MSC); m=12/14; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.47797; ----AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; positions_8nt_m3 versus MA1467.1_rc (ATOH1(var.2)_rc); m=13/14; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.465322; ----RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0

MA1646.1_shift0 (OSR2)
; positions_8nt_m3 versus MA1646.1 (OSR2); m=14/14; ncol2=12; w=11; offset=-1; strand=D; shift=0; score=0.454967; amaCAGAAGChr----- ; cor=; Ncor= a 4437.0 4244.0 8520.0 254.0 13599.0 216.0 11678.0 13725.0 416.0 666.0 4386.0 4048.0 0 0 0 0 0 c 3641.0 4206.0 2221.0 13937.0 197.0 229.0 703.0 288.0 170.0 12109.0 4274.0 3304.0 0 0 0 0 0 g 3246.0 3006.0 2117.0 406.0 737.0 14206.0 901.0 516.0 13982.0 841.0 2266.0 4726.0 0 0 0 0 0 t 3484.0 3352.0 1950.0 211.0 275.0 157.0 1526.0 279.0 240.0 1192.0 3882.0 2730.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_7nt_m17_shift0 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m17_shift0 (local_words_7nt_m17local_words_7nt_m17)
; local_words_7nt_m17 (local_words_7nt_m17local_words_7nt_m17); m=0 (reference); ncol1=17; shift=0; ncol=17; rsaGACAGCTGCTGcys ; Alignment reference a 119 106 190 36 399 4 452 4 1 22 0 7 48 30 47 90 96 c 113 150 66 51 14 449 0 5 447 2 1 419 15 62 292 114 125 g 134 143 101 359 29 0 0 443 4 2 450 11 22 326 55 111 151 t 87 54 96 7 11 0 1 1 1 427 2 16 368 35 59 138 81

MA0499.2_rc_shift1 (MYOD1_rc)
; local_words_7nt_m17 versus MA0499.2_rc (MYOD1_rc); m=1/20; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.639172; -rkrACAGGTGcwg--- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; local_words_7nt_m17 versus MA1485.1_rc (FERD3L_rc); m=2/20; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.633583; -GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0832.1_shift1 (Tcf21)
; local_words_7nt_m17 versus MA0832.1 (Tcf21); m=3/20; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.63312; -ryAACAGCTGTTry-- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0500.2_rc_shift2 (MYOG_rc)
; local_words_7nt_m17 versus MA0500.2_rc (MYOG_rc); m=4/20; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.60278; --sarCAGCTGyts--- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1641.1_shift2 (MYF5)
; local_words_7nt_m17 versus MA1641.1 (MYF5); m=5/20; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.58036; --gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA0521.1_shift3 (Tcf12)
; local_words_7nt_m17 versus MA0521.1 (Tcf12); m=6/20; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.577326; ---rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; local_words_7nt_m17 versus MA1619.1 (Ptf1a(var.2)); m=7/20; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.576325; --rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0745.2_rc_shift1 (SNAI2_rc)
; local_words_7nt_m17 versus MA0745.2_rc (SNAI2_rc); m=8/20; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.550111; -rykACAGGTGcrt--- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; local_words_7nt_m17 versus MA1467.1_rc (ATOH1(var.2)_rc); m=9/20; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.518901; ---RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0816.1_shift3 (Ascl2)
; local_words_7nt_m17 versus MA0816.1 (Ascl2); m=10/20; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.513251; ---arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; local_words_7nt_m17 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/20; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.506333; ---rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; local_words_7nt_m17 versus MA1100.2_rc (ASCL1_rc); m=12/20; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.499238; ---rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; local_words_7nt_m17 versus MA1635.1 (BHLHE22(var.2)); m=13/20; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.492118; ---csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA0665.1_shift3 (MSC)
; local_words_7nt_m17 versus MA0665.1 (MSC); m=14/20; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.483049; ---AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0691.1_shift3 (TFAP4)
; local_words_7nt_m17 versus MA0691.1 (TFAP4); m=15/20; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.468474; ---AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0048.2_shift3 (NHLH1)
; local_words_7nt_m17 versus MA0048.2 (NHLH1); m=16/20; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.466749; ---cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA1648.1_shift3 (TCF12(var.2))
; local_words_7nt_m17 versus MA1648.1 (TCF12(var.2)); m=17/20; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.46149; ---ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; local_words_7nt_m17 versus MA0667.1_rc (MYF6_rc); m=18/20; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.456827; ---RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0522.3_shift3 (TCF3)
; local_words_7nt_m17 versus MA0522.3 (TCF3); m=19/20; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.456316; ---svCACCTGCss--- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; local_words_7nt_m17 versus MA0820.1_rc (FIGLA_rc); m=20/20; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.416997; ---wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m6_shift3 ; 28 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m6_shift3 (local_words_8nt_m6local_words_8nt_m6)
; local_words_8nt_m6 (local_words_8nt_m6local_words_8nt_m6); m=0 (reference); ncol1=17; shift=3; ncol=20; ---sksTGACAGCTGCccys ; Alignment reference a 0 0 0 54 56 39 23 6 274 2 294 3 0 0 0 6 31 59 63 35 c 0 0 0 109 73 83 22 8 6 293 0 4 290 1 1 253 180 149 83 77 g 0 0 0 90 93 157 29 276 12 1 1 288 5 3 293 12 30 43 71 113 t 0 0 0 43 74 17 222 6 4 0 1 1 1 292 2 25 55 45 79 71

MA0499.2_rc_shift5 (MYOD1_rc)
; local_words_8nt_m6 versus MA0499.2_rc (MYOD1_rc); m=1/27; ncol2=13; w=13; offset=2; strand=R; shift=5; score=0.638051; -----rkrACAGGTGcwg-- ; cor=; Ncor= a 0 0 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 0 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 0 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 0 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0

MA1485.1_rc_shift5 (FERD3L_rc)
; local_words_8nt_m6 versus MA1485.1_rc (FERD3L_rc); m=2/27; ncol2=14; w=14; offset=2; strand=R; shift=5; score=0.627222; -----GTrACAGCTGkyrC- ; cor=; Ncor= a 0 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 0 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0

MA0500.2_shift6 (MYOG)
; local_words_8nt_m6 versus MA0500.2 (MYOG); m=3/27; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.585187; ------sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 0 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 0 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 0 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA1641.1_shift6 (MYF5)
; local_words_8nt_m6 versus MA1641.1 (MYF5); m=4/27; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.584423; ------gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 c 0 0 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 g 0 0 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0

MA0521.1_shift7 (Tcf12)
; local_words_8nt_m6 versus MA0521.1 (Tcf12); m=5/27; ncol2=11; w=11; offset=4; strand=D; shift=7; score=0.576344; -------rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA0796.1_shift6 (TGIF1)
; local_words_8nt_m6 versus MA0796.1 (TGIF1); m=6/27; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.576318; ------TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 c 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 g 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 t 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0

MA1619.1_shift6 (Ptf1a(var.2))
; local_words_8nt_m6 versus MA1619.1 (Ptf1a(var.2)); m=7/27; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.575369; ------rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA1571.1_rc_shift6 (TGIF2LX_rc)
; local_words_8nt_m6 versus MA1571.1_rc (TGIF2LX_rc); m=8/27; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.57225; ------TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0

MA0797.1_shift6 (TGIF2)
; local_words_8nt_m6 versus MA0797.1 (TGIF2); m=9/27; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.568856; ------TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 0 c 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 0 g 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 0 t 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0 0

MA0745.2_rc_shift5 (SNAI2_rc)
; local_words_8nt_m6 versus MA0745.2_rc (SNAI2_rc); m=10/27; ncol2=13; w=13; offset=2; strand=R; shift=5; score=0.566166; -----rykACAGGTGcrt-- ; cor=; Ncor= a 0 0 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 c 0 0 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 g 0 0 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 t 0 0 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0

MA1572.1_rc_shift6 (TGIF2LY_rc)
; local_words_8nt_m6 versus MA1572.1_rc (TGIF2LY_rc); m=11/27; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.564946; ------TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 0 c 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 0 g 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 0 t 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0 0

MA0783.1_shift6 (PKNOX2)
; local_words_8nt_m6 versus MA0783.1 (PKNOX2); m=12/27; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.538789; ------TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 0 c 0 0 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 0 g 0 0 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 0 t 0 0 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0 0

MA1631.1_shift6 (ASCL1(var.2))
; local_words_8nt_m6 versus MA1631.1 (ASCL1(var.2)); m=13/27; ncol2=13; w=13; offset=3; strand=D; shift=6; score=0.537365; ------cdgCACCTGCysc- ; cor=; Ncor= a 0 0 0 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 c 0 0 0 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 g 0 0 0 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 t 0 0 0 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0

MA1467.1_rc_shift7 (ATOH1(var.2)_rc)
; local_words_8nt_m6 versus MA1467.1_rc (ATOH1(var.2)_rc); m=14/27; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.505578; -------RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0

MA1100.2_rc_shift7 (ASCL1_rc)
; local_words_8nt_m6 versus MA1100.2_rc (ASCL1_rc); m=15/27; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.504317; -------rgCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 c 0 0 0 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 g 0 0 0 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 t 0 0 0 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0

MA1635.1_shift7 (BHLHE22(var.2))
; local_words_8nt_m6 versus MA1635.1 (BHLHE22(var.2)); m=16/27; ncol2=10; w=10; offset=4; strand=D; shift=7; score= 0.4962; -------csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0

MA1472.1_rc_shift7 (BHLHA15(var.2)_rc)
; local_words_8nt_m6 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=17/27; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.493499; -------rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0

MA0816.1_shift7 (Ascl2)
; local_words_8nt_m6 versus MA0816.1 (Ascl2); m=18/27; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.492136; -------arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA0522.3_shift7 (TCF3)
; local_words_8nt_m6 versus MA0522.3 (TCF3); m=19/27; ncol2=11; w=11; offset=4; strand=D; shift=7; score=0.462223; -------svCACCTGCss-- ; cor=; Ncor= a 0 0 0 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 c 0 0 0 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 g 0 0 0 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 t 0 0 0 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0

MA1648.1_shift7 (TCF12(var.2))
; local_words_8nt_m6 versus MA1648.1 (TCF12(var.2)); m=20/27; ncol2=11; w=11; offset=4; strand=D; shift=7; score=0.461971; -------ssCACCTGCys-- ; cor=; Ncor= a 0 0 0 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 c 0 0 0 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 g 0 0 0 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 t 0 0 0 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0

MA0048.2_shift7 (NHLH1)
; local_words_8nt_m6 versus MA0048.2 (NHLH1); m=21/27; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.448769; -------cGCAGCTGCk--- ; cor=; Ncor= a 0 0 0 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 c 0 0 0 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 g 0 0 0 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 t 0 0 0 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0

MA0665.1_shift7 (MSC)
; local_words_8nt_m6 versus MA0665.1 (MSC); m=22/27; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.445584; -------AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0

MA0691.1_shift7 (TFAP4)
; local_words_8nt_m6 versus MA0691.1 (TFAP4); m=23/27; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.43494; -------AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0

MA0782.2_shift0 (PKNOX1)
; local_words_8nt_m6 versus MA0782.2 (PKNOX1); m=24/27; ncol2=15; w=12; offset=-3; strand=D; shift=0; score=0.423578; twTGAgTGACAGctr----- ; cor=; Ncor= a 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 0 0 0 0 c 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 0 0 0 0 g 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 0 0 0 0 t 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0 0 0 0 0

MA0667.1_rc_shift7 (MYF6_rc)
; local_words_8nt_m6 versus MA0667.1_rc (MYF6_rc); m=25/27; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.423353; -------RACAGyTGTT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 c 0 0 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 g 0 0 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 t 0 0 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0

MA0774.1_shift5 (MEIS2)
; local_words_8nt_m6 versus MA0774.1 (MEIS2); m=26/27; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.417577; -----tTGACAGs------- ; cor=; Ncor= a 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 0 c 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 0 g 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 0 t 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0 0

MA0775.1_shift5 (MEIS3)
; local_words_8nt_m6 versus MA0775.1 (MEIS3); m=27/27; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.402574; -----wTGACAgs------- ; cor=; Ncor= a 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 0 c 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 0 g 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 0 t 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m2_shift0 ; 19 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m2_shift0 (local_words_8nt_m2local_words_8nt_m2)
; local_words_8nt_m2 (local_words_8nt_m2local_words_8nt_m2); m=0 (reference); ncol1=18; shift=0; ncol=18; svgCAGCAGCTGTCaccs ; Alignment reference a 49 64 32 19 210 10 1 233 0 0 1 1 9 4 158 23 58 52 c 81 64 32 182 13 10 245 1 4 239 1 1 17 222 40 125 79 73 g 66 67 162 29 8 222 0 1 241 4 0 242 6 14 25 55 52 85 t 50 51 20 16 15 4 0 11 1 3 244 2 214 6 23 43 57 36

MA1485.1_shift2 (FERD3L)
; local_words_8nt_m2 versus MA1485.1 (FERD3L); m=1/18; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.637349; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0499.2_shift3 (MYOD1)
; local_words_8nt_m2 versus MA0499.2 (MYOD1); m=2/18; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.592714; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; local_words_8nt_m2 versus MA0832.1_rc (Tcf21_rc); m=3/18; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.58694; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; local_words_8nt_m2 versus MA0500.2_rc (MYOG_rc); m=4/18; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.552032; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_8nt_m2 versus MA0521.1_rc (Tcf12_rc); m=5/18; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.537043; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; local_words_8nt_m2 versus MA1641.1_rc (MYF5_rc); m=6/18; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.531916; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_8nt_m2 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/18; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.52618; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA0745.2_shift3 (SNAI2)
; local_words_8nt_m2 versus MA0745.2 (SNAI2); m=8/18; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.510058; ---aygCACCTGTmry-- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; local_words_8nt_m2 versus MA1467.1 (ATOH1(var.2)); m=9/18; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.491175; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0816.1_shift4 (Ascl2)
; local_words_8nt_m2 versus MA0816.1 (Ascl2); m=10/18; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.476603; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_8nt_m2 versus MA1472.1 (BHLHA15(var.2)); m=11/18; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.472038; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_8nt_m2 versus MA1100.2 (ASCL1); m=12/18; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.465597; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_8nt_m2 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=13/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.457039; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; local_words_8nt_m2 versus MA0665.1_rc (MSC_rc); m=14/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.450523; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; local_words_8nt_m2 versus MA0691.1_rc (TFAP4_rc); m=15/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.43468; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_8nt_m2 versus MA0048.2_rc (NHLH1_rc); m=16/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.429949; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; local_words_8nt_m2 versus MA1648.1_rc (TCF12(var.2)_rc); m=17/18; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.427822; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0667.1_shift4 (MYF6)
; local_words_8nt_m2 versus MA0667.1 (MYF6); m=18/18; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.426968; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m1_shift0 ; 19 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m1_shift0 (local_words_8nt_m1local_words_8nt_m1)
; local_words_8nt_m1 (local_words_8nt_m1local_words_8nt_m1); m=0 (reference); ncol1=18; shift=0; ncol=18; sggtGACAGCTGCTGcbs ; Alignment reference a 36 57 43 23 6 214 2 244 3 1 11 0 4 15 16 20 51 50 c 85 52 55 25 14 6 242 0 4 241 1 0 222 8 29 162 67 66 g 73 79 125 40 222 17 1 1 239 4 1 245 10 13 182 32 64 81 t 52 58 23 158 4 9 1 1 0 0 233 1 10 210 19 32 64 49

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_8nt_m1 versus MA1485.1_rc (FERD3L_rc); m=1/18; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.637349; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; local_words_8nt_m1 versus MA0499.2_rc (MYOD1_rc); m=2/18; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.592714; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0832.1_shift2 (Tcf21)
; local_words_8nt_m1 versus MA0832.1 (Tcf21); m=3/18; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.58694; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0500.2_shift3 (MYOG)
; local_words_8nt_m1 versus MA0500.2 (MYOG); m=4/18; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.552032; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA0521.1_shift4 (Tcf12)
; local_words_8nt_m1 versus MA0521.1 (Tcf12); m=5/18; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.537043; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1641.1_shift3 (MYF5)
; local_words_8nt_m1 versus MA1641.1 (MYF5); m=6/18; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.531916; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; local_words_8nt_m1 versus MA1619.1 (Ptf1a(var.2)); m=7/18; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.52618; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0745.2_rc_shift2 (SNAI2_rc)
; local_words_8nt_m1 versus MA0745.2_rc (SNAI2_rc); m=8/18; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.510058; --rykACAGGTGcrt--- ; cor=; Ncor= a 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 c 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 g 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 t 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; local_words_8nt_m1 versus MA1467.1_rc (ATOH1(var.2)_rc); m=9/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.491175; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_8nt_m1 versus MA0816.1_rc (Ascl2_rc); m=10/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.476603; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; local_words_8nt_m1 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.472038; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; local_words_8nt_m1 versus MA1100.2_rc (ASCL1_rc); m=12/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.465597; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; local_words_8nt_m1 versus MA1635.1 (BHLHE22(var.2)); m=13/18; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.457039; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA0665.1_shift4 (MSC)
; local_words_8nt_m1 versus MA0665.1 (MSC); m=14/18; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.450523; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; local_words_8nt_m1 versus MA0691.1 (TFAP4); m=15/18; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.43468; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; local_words_8nt_m1 versus MA0048.2 (NHLH1); m=16/18; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.429949; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; local_words_8nt_m1 versus MA1648.1 (TCF12(var.2)); m=17/18; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.427822; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; local_words_8nt_m1 versus MA0667.1_rc (MYF6_rc); m=18/18; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.426968; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m10_shift0 ; 17 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m10_shift0 (local_words_8nt_m10local_words_8nt_m10)
; local_words_8nt_m10 (local_words_8nt_m10local_words_8nt_m10); m=0 (reference); ncol1=16; shift=0; ncol=16; skGcCAGCTGCTGCyg ; Alignment reference a 70 55 19 44 1 283 7 2 20 0 1 5 7 3 46 54 c 96 62 32 193 286 3 5 279 2 2 283 2 21 247 95 65 g 76 78 218 41 1 2 277 7 2 287 1 4 248 13 59 103 t 47 94 20 11 1 1 0 1 265 0 4 278 13 26 89 67

MA1485.1_rc_shift0 (FERD3L_rc)
; local_words_8nt_m10 versus MA1485.1_rc (FERD3L_rc); m=1/16; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.637194; GTrACAGCTGkyrC-- ; cor=; Ncor= a 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0500.2_shift1 (MYOG)
; local_words_8nt_m10 versus MA0500.2 (MYOG); m=2/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.618863; -sarCAGCTGyts--- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA0499.2_rc_shift0 (MYOD1_rc)
; local_words_8nt_m10 versus MA0499.2_rc (MYOD1_rc); m=3/16; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.586858; rkrACAGGTGcwg--- ; cor=; Ncor= a 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; local_words_8nt_m10 versus MA0521.1_rc (Tcf12_rc); m=4/16; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.56185; -cwsCAGCTGYy---- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1619.1_shift1 (Ptf1a(var.2))
; local_words_8nt_m10 versus MA1619.1 (Ptf1a(var.2)); m=5/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.554299; -rmaCAGCTGtky--- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1641.1_shift1 (MYF5)
; local_words_8nt_m10 versus MA1641.1 (MYF5); m=6/16; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.551193; -gvaCAGCTGtbc--- ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA0816.1_rc_shift2 (Ascl2_rc)
; local_words_8nt_m10 versus MA0816.1_rc (Ascl2_rc); m=7/16; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.535442; --rrCAGCTGyt---- ; cor=; Ncor= a 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA1100.2_rc_shift2 (ASCL1_rc)
; local_words_8nt_m10 versus MA1100.2_rc (ASCL1_rc); m=8/16; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.526979; --rgCAGCTGyy---- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1635.1_shift2 (BHLHE22(var.2))
; local_words_8nt_m10 versus MA1635.1 (BHLHE22(var.2)); m=9/16; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.52362; --csCAGCTGsg---- ; cor=; Ncor= a 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)
; local_words_8nt_m10 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=10/16; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.517184; --rrCAGCTGbt---- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1467.1_rc_shift2 (ATOH1(var.2)_rc)
; local_words_8nt_m10 versus MA1467.1_rc (ATOH1(var.2)_rc); m=11/16; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.503135; --RACAGCTGTT---- ; cor=; Ncor= a 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0048.2_shift2 (NHLH1)
; local_words_8nt_m10 versus MA0048.2 (NHLH1); m=12/16; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.497253; --cGCAGCTGCk---- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA1648.1_shift2 (TCF12(var.2))
; local_words_8nt_m10 versus MA1648.1 (TCF12(var.2)); m=13/16; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.494192; --ssCACCTGCys--- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift2 (TCF3)
; local_words_8nt_m10 versus MA0522.3 (TCF3); m=14/16; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.486537; --svCACCTGCss--- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0691.1_rc_shift2 (TFAP4_rc)
; local_words_8nt_m10 versus MA0691.1_rc (TFAP4_rc); m=15/16; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.474091; --AwCAGCTGwT---- ; cor=; Ncor= a 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA0665.1_shift2 (MSC)
; local_words_8nt_m10 versus MA0665.1 (MSC); m=16/16; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.46746; --AACAGCTGTT---- ; cor=; Ncor= a 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m11_shift0 ; 17 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m11_shift0 (local_words_8nt_m11local_words_8nt_m11)
; local_words_8nt_m11 (local_words_8nt_m11local_words_8nt_m11); m=0 (reference); ncol1=16; shift=0; ncol=16; crGCAGCAGCTGgCms ; Alignment reference a 67 89 26 13 279 4 0 266 1 0 1 1 11 20 94 47 c 103 60 13 248 4 1 288 2 7 278 2 1 41 218 78 76 g 66 95 248 22 2 284 2 2 280 5 3 287 194 33 63 97 t 54 46 3 7 5 1 0 20 2 7 284 1 44 19 55 70

MA1485.1_shift2 (FERD3L)
; local_words_8nt_m11 versus MA1485.1 (FERD3L); m=1/16; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.637057; --GyrmCAGCTGTyAC ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0

MA0500.2_rc_shift3 (MYOG_rc)
; local_words_8nt_m11 versus MA0500.2_rc (MYOG_rc); m=2/16; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.619143; ---sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA0499.2_shift3 (MYOD1)
; local_words_8nt_m11 versus MA0499.2 (MYOD1); m=3/16; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.586827; ---cwgCACCTGTymy ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0

MA0521.1_shift4 (Tcf12)
; local_words_8nt_m11 versus MA0521.1 (Tcf12); m=4/16; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.562042; ----rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_8nt_m11 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=5/16; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.554637; ---rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0

MA1641.1_rc_shift3 (MYF5_rc)
; local_words_8nt_m11 versus MA1641.1_rc (MYF5_rc); m=6/16; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.551479; ---gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0

MA0816.1_shift4 (Ascl2)
; local_words_8nt_m11 versus MA0816.1 (Ascl2); m=7/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.535423; ----arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_8nt_m11 versus MA1100.2 (ASCL1); m=8/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.526992; ----rrCAGCTGcy-- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_8nt_m11 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=9/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.523743; ----csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_8nt_m11 versus MA1472.1 (BHLHA15(var.2)); m=10/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.517238; ----avCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; local_words_8nt_m11 versus MA1467.1 (ATOH1(var.2)); m=11/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.502971; ----AACAGCTGTY-- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_8nt_m11 versus MA0048.2_rc (NHLH1_rc); m=12/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.497513; ----mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; local_words_8nt_m11 versus MA1648.1_rc (TCF12(var.2)_rc); m=13/16; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.494461; ---srGCAGGTGss-- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; local_words_8nt_m11 versus MA0522.3_rc (TCF3_rc); m=14/16; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.486832; ---ssGCAGGTGbs-- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0

MA0691.1_shift4 (TFAP4)
; local_words_8nt_m11 versus MA0691.1 (TFAP4); m=15/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.474137; ----AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; local_words_8nt_m11 versus MA0665.1_rc (MSC_rc); m=16/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.467449; ----AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0

One-to-n matrix alignment; reference matrix: local_words_7nt_m3_shift0 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m3_shift0 (local_words_7nt_m3local_words_7nt_m3)
; local_words_7nt_m3 (local_words_7nt_m3local_words_7nt_m3); m=0 (reference); ncol1=18; shift=0; ncol=18; svgCAGCAGCTGTCascs ; Alignment reference a 80 93 53 30 274 14 2 333 1 0 1 2 10 4 219 35 77 73 c 110 89 43 244 24 12 345 2 7 340 2 1 22 305 58 161 110 101 g 92 93 222 54 17 318 1 1 340 5 0 344 9 25 39 92 80 118 t 67 74 31 21 34 5 1 13 1 4 346 2 308 15 33 61 82 57

MA1485.1_shift2 (FERD3L)
; local_words_7nt_m3 versus MA1485.1 (FERD3L); m=1/19; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.634319; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0499.2_shift3 (MYOD1)
; local_words_7nt_m3 versus MA0499.2 (MYOD1); m=2/19; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.601342; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; local_words_7nt_m3 versus MA0832.1_rc (Tcf21_rc); m=3/19; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.590025; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; local_words_7nt_m3 versus MA0500.2_rc (MYOG_rc); m=4/19; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.558396; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_7nt_m3 versus MA0521.1_rc (Tcf12_rc); m=5/19; ncol2=11; w=11; offset=3; strand=R; shift=3; score= 0.5438; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; local_words_7nt_m3 versus MA1641.1_rc (MYF5_rc); m=6/19; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.539256; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_7nt_m3 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/19; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.53394; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA0745.2_shift3 (SNAI2)
; local_words_7nt_m3 versus MA0745.2 (SNAI2); m=8/19; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.519994; ---aygCACCTGTmry-- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; local_words_7nt_m3 versus MA1467.1 (ATOH1(var.2)); m=9/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.490853; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_7nt_m3 versus MA0816.1_rc (Ascl2_rc); m=10/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.478847; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_7nt_m3 versus MA1472.1 (BHLHA15(var.2)); m=11/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.474568; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_7nt_m3 versus MA1100.2 (ASCL1); m=12/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.469424; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_7nt_m3 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=13/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.461736; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; local_words_7nt_m3 versus MA0665.1_rc (MSC_rc); m=14/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score= 0.4512; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; local_words_7nt_m3 versus MA0691.1_rc (TFAP4_rc); m=15/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.436125; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_7nt_m3 versus MA0048.2_rc (NHLH1_rc); m=16/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.434484; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; local_words_7nt_m3 versus MA1648.1_rc (TCF12(var.2)_rc); m=17/19; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.433154; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; local_words_7nt_m3 versus MA0522.3_rc (TCF3_rc); m=18/19; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.428525; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA0667.1_shift4 (MYF6)
; local_words_7nt_m3 versus MA0667.1 (MYF6); m=19/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.427642; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_7nt_m2_shift0 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m2_shift0 (local_words_7nt_m2local_words_7nt_m2)
; local_words_7nt_m2 (local_words_7nt_m2local_words_7nt_m2); m=0 (reference); ncol1=18; shift=0; ncol=18; sgstGACAGCTGCTGcbs ; Alignment reference a 57 82 61 33 15 307 2 344 4 1 13 1 5 34 21 31 72 66 c 118 80 92 39 25 9 342 0 5 338 1 1 317 17 52 220 93 92 g 100 109 160 58 303 22 1 2 338 7 2 343 11 24 244 43 89 109 t 72 76 34 217 4 9 2 1 0 1 331 2 14 272 30 53 93 80

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_7nt_m2 versus MA1485.1_rc (FERD3L_rc); m=1/19; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.634036; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; local_words_7nt_m2 versus MA0499.2_rc (MYOD1_rc); m=2/19; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.601405; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0832.1_shift2 (Tcf21)
; local_words_7nt_m2 versus MA0832.1 (Tcf21); m=3/19; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.590067; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0500.2_shift3 (MYOG)
; local_words_7nt_m2 versus MA0500.2 (MYOG); m=4/19; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.558255; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA0521.1_shift4 (Tcf12)
; local_words_7nt_m2 versus MA0521.1 (Tcf12); m=5/19; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.543642; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1641.1_shift3 (MYF5)
; local_words_7nt_m2 versus MA1641.1 (MYF5); m=6/19; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.539095; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; local_words_7nt_m2 versus MA1619.1 (Ptf1a(var.2)); m=7/19; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.533791; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0745.2_rc_shift2 (SNAI2_rc)
; local_words_7nt_m2 versus MA0745.2_rc (SNAI2_rc); m=8/19; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.520059; --rykACAGGTGcrt--- ; cor=; Ncor= a 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 c 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 g 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 t 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; local_words_7nt_m2 versus MA1467.1_rc (ATOH1(var.2)_rc); m=9/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.490682; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0816.1_shift4 (Ascl2)
; local_words_7nt_m2 versus MA0816.1 (Ascl2); m=10/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.478844; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; local_words_7nt_m2 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.474444; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; local_words_7nt_m2 versus MA1100.2_rc (ASCL1_rc); m=12/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.469421; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; local_words_7nt_m2 versus MA1635.1 (BHLHE22(var.2)); m=13/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.461611; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA0665.1_shift4 (MSC)
; local_words_7nt_m2 versus MA0665.1 (MSC); m=14/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.451121; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; local_words_7nt_m2 versus MA0691.1 (TFAP4); m=15/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.435904; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; local_words_7nt_m2 versus MA0048.2 (NHLH1); m=16/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.434523; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; local_words_7nt_m2 versus MA1648.1 (TCF12(var.2)); m=17/19; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.433108; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift4 (TCF3)
; local_words_7nt_m2 versus MA0522.3 (TCF3); m=18/19; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.428476; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; local_words_7nt_m2 versus MA0667.1_rc (MYF6_rc); m=19/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.427588; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m12_shift0 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m12_shift0 (local_words_8nt_m12local_words_8nt_m12)
; local_words_8nt_m12 (local_words_8nt_m12local_words_8nt_m12); m=0 (reference); ncol1=17; shift=0; ncol=17; smgCAGCAGCTGTCccy ; Alignment reference a 49 80 29 25 229 9 0 248 0 3 1 1 2 9 37 41 50 c 90 72 43 188 10 10 261 1 5 251 0 1 9 222 161 99 82 g 74 61 175 31 8 240 1 2 257 4 0 259 10 17 30 60 64 t 49 49 15 18 15 3 0 11 0 4 261 1 241 14 34 62 66

MA0499.2_shift3 (MYOD1)
; local_words_8nt_m12 versus MA0499.2 (MYOD1); m=1/19; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.633982; ---cwgCACCTGTymy- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA1485.1_shift2 (FERD3L)
; local_words_8nt_m12 versus MA1485.1 (FERD3L); m=2/19; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.624744; --GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; local_words_8nt_m12 versus MA0832.1_rc (Tcf21_rc); m=3/19; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.621703; --ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA0500.2_shift3 (MYOG)
; local_words_8nt_m12 versus MA0500.2 (MYOG); m=4/19; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.587421; ---sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; local_words_8nt_m12 versus MA1641.1_rc (MYF5_rc); m=5/19; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.570208; ---gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_8nt_m12 versus MA0521.1_rc (Tcf12_rc); m=6/19; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.56952; ---cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; local_words_8nt_m12 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/19; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.563418; ---rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA0745.2_shift3 (SNAI2)
; local_words_8nt_m12 versus MA0745.2 (SNAI2); m=8/19; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.542676; ---aygCACCTGTmry- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA1467.1_shift4 (ATOH1(var.2))
; local_words_8nt_m12 versus MA1467.1 (ATOH1(var.2)); m=9/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.518735; ----AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_8nt_m12 versus MA0816.1_rc (Ascl2_rc); m=10/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.505126; ----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; local_words_8nt_m12 versus MA1472.1 (BHLHA15(var.2)); m=11/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.500921; ----avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA1100.2_shift4 (ASCL1)
; local_words_8nt_m12 versus MA1100.2 (ASCL1); m=12/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.490893; ----rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; local_words_8nt_m12 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=13/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.481947; ----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; local_words_8nt_m12 versus MA0665.1_rc (MSC_rc); m=14/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.481673; ----AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; local_words_8nt_m12 versus MA0691.1_rc (TFAP4_rc); m=15/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.46305; ----AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA0667.1_shift4 (MYF6)
; local_words_8nt_m12 versus MA0667.1 (MYF6); m=16/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.456785; ----AACArCTGTY--- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; local_words_8nt_m12 versus MA1648.1_rc (TCF12(var.2)_rc); m=17/19; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.454263; ---srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_8nt_m12 versus MA0048.2_rc (NHLH1_rc); m=18/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.453517; ----mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA0820.1_shift4 (FIGLA)
; local_words_8nt_m12 versus MA0820.1 (FIGLA); m=19/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.413856; ----wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m32_shift2 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m32_shift2 (oligos_7nt_mkv4_m32oligos_7nt_mkv4_m32)
; oligos_7nt_mkv4_m32 (oligos_7nt_mkv4_m32oligos_7nt_mkv4_m32); m=0 (reference); ncol1=12; shift=2; ncol=17; --sgGCCAGGCCss--- ; Alignment reference a 0 0 49 57 8 1 0 235 2 1 0 1 56 38 0 0 0 c 0 0 96 66 29 270 264 20 15 4 266 266 85 84 0 0 0 g 0 0 73 98 225 1 9 18 255 267 4 5 73 114 0 0 0 t 0 0 55 52 11 1 0 0 1 1 3 1 59 37 0 0 0

MA0146.2_shift0 (Zfx)
; oligos_7nt_mkv4_m32 versus MA0146.2 (Zfx); m=1/7; ncol2=14; w=12; offset=-2; strand=D; shift=0; score=0.629218; sssgsCbvGGCCTs--- ; cor=; Ncor= a 50.0 59.0 91.0 72.0 10.0 6.0 30.0 191.0 8.0 0.0 0.0 0.0 0.0 84.0 0 0 0 c 178.0 170.0 151.0 49.0 297.0 361.0 124.0 153.0 2.0 3.0 481.0 480.0 1.0 122.0 0 0 0 g 179.0 173.0 199.0 297.0 144.0 2.0 183.0 122.0 470.0 477.0 0.0 0.0 0.0 218.0 0 0 0 t 70.0 75.0 37.0 61.0 30.0 112.0 144.0 15.0 1.0 1.0 0.0 1.0 480.0 56.0 0 0 0

MA0746.2_shift3 (SP3)
; oligos_7nt_mkv4_m32 versus MA0746.2 (SP3); m=2/7; ncol2=13; w=11; offset=1; strand=D; shift=3; score=0.577914; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0

MA0079.4_shift1 (SP1)
; oligos_7nt_mkv4_m32 versus MA0079.4 (SP1); m=3/7; ncol2=15; w=12; offset=-1; strand=D; shift=1; score=0.571557; -ywrRCCACGCCCmCh- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0

MA0740.1_shift3 (KLF14)
; oligos_7nt_mkv4_m32 versus MA0740.1 (KLF14); m=4/7; ncol2=14; w=11; offset=1; strand=D; shift=3; score=0.516022; ---krcCACGCCCmYyt ; cor=; Ncor= a 0 0 0 430.0 1205.0 526.0 0.0 1708.0 2.0 69.0 0.0 0.0 0.0 716.0 32.0 280.0 649.0 c 0 0 0 215.0 73.0 1360.0 1599.0 136.0 1596.0 36.0 1602.0 1604.0 1609.0 961.0 1463.0 594.0 741.0 g 0 0 0 966.0 2280.0 96.0 10.0 58.0 0.0 2939.0 3.0 3.0 4.0 1.0 15.0 89.0 314.0 t 0 0 0 693.0 71.0 404.0 248.0 5.0 2.0 31.0 0.0 6.0 65.0 31.0 559.0 1041.0 1670.0

MA0685.1_shift1 (SP4)
; oligos_7nt_mkv4_m32 versus MA0685.1 (SP4); m=5/7; ncol2=17; w=12; offset=-1; strand=D; shift=1; score=0.509446; -ywrGCCACGCCCmCty ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0

MA0742.1_shift3 (Klf12)
; oligos_7nt_mkv4_m32 versus MA0742.1 (Klf12); m=6/7; ncol2=15; w=11; offset=1; strand=D; shift=3; score=0.485569; ---GrCCACGCCCwtht ; cor=; Ncor= a 0 0 0 167.0 553.0 19.0 5.0 853.0 9.0 215.0 0.0 0.0 0.0 410.0 238.0 308.0 238.0 c 0 0 0 35.0 11.0 668.0 670.0 27.0 675.0 1.0 687.0 706.0 715.0 120.0 219.0 239.0 186.0 g 0 0 0 1158.0 531.0 8.0 12.0 2.0 0.0 1348.0 0.0 9.0 0.0 0.0 99.0 84.0 117.0 t 0 0 0 225.0 0.0 9.0 3.0 0.0 4.0 16.0 4.0 13.0 13.0 483.0 403.0 290.0 429.0

MA0671.1_shift1 (NFIX)
; oligos_7nt_mkv4_m32 versus MA0671.1 (NFIX); m=7/7; ncol2=9; w=8; offset=-1; strand=D; shift=1; score=0.449178; -sgtGCCArv------- ; cor=; Ncor= a 0 7951.0 7832.0 11279.0 132.0 3.0 0.0 32864.0 32864.0 8251.0 0 0 0 0 0 0 0 c 0 8810.0 6134.0 9695.0 186.0 32864.0 32864.0 2230.0 1356.0 9039.0 0 0 0 0 0 0 0 g 0 8725.0 10855.0 5911.0 32864.0 3257.0 0.0 180.0 12688.0 9135.0 0 0 0 0 0 0 0 t 0 7378.0 8043.0 32864.0 2539.0 29.0 0.0 110.0 2399.0 6439.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m16_shift0 ; 26 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m16_shift0 (oligos_6nt_mkv3_m16oligos_6nt_mkv3_m16)
; oligos_6nt_mkv3_m16 (oligos_6nt_mkv3_m16oligos_6nt_mkv3_m16); m=0 (reference); ncol1=18; shift=0; ncol=19; sscggAGCAGCTGTctss- ; Alignment reference a 136 166 183 140 62 593 86 0 768 2 4 0 0 24 36 164 99 143 0 c 249 240 270 93 149 63 63 772 1 6 762 5 1 76 504 188 267 235 0 g 234 212 192 426 503 59 608 1 2 765 5 1 772 47 117 127 242 209 0 t 155 156 129 115 60 59 17 1 3 1 3 768 1 627 117 295 166 187 0

MA1529.1_shift1 (NHLH2)
; oligos_6nt_mkv3_m16 versus MA1529.1 (NHLH2); m=1/25; ncol2=18; w=17; offset=1; strand=D; shift=1; score=0.628815; -ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0832.1_rc_shift3 (Tcf21_rc)
; oligos_6nt_mkv3_m16 versus MA0832.1_rc (Tcf21_rc); m=2/25; ncol2=14; w=14; offset=3; strand=R; shift=3; score=0.61716; ---ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA0499.2_shift4 (MYOD1)
; oligos_6nt_mkv3_m16 versus MA0499.2 (MYOD1); m=3/25; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.606714; ----cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA0500.2_rc_shift4 (MYOG_rc)
; oligos_6nt_mkv3_m16 versus MA0500.2_rc (MYOG_rc); m=4/25; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.595193; ----sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1485.1_shift3 (FERD3L)
; oligos_6nt_mkv3_m16 versus MA1485.1 (FERD3L); m=5/25; ncol2=14; w=14; offset=3; strand=D; shift=3; score=0.588819; ---GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA1641.1_rc_shift4 (MYF5_rc)
; oligos_6nt_mkv3_m16 versus MA1641.1_rc (MYF5_rc); m=6/25; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.58309; ----gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)
; oligos_6nt_mkv3_m16 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/25; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.578723; ----rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1621.1_shift3 (Rbpjl)
; oligos_6nt_mkv3_m16 versus MA1621.1 (Rbpjl); m=8/25; ncol2=14; w=14; offset=3; strand=D; shift=3; score=0.557102; ---svmaCACCTGtsyc-- ; cor=; Ncor= a 0 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 c 0 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 g 0 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 t 0 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0

MA0521.1_rc_shift4 (Tcf12_rc)
; oligos_6nt_mkv3_m16 versus MA0521.1_rc (Tcf12_rc); m=9/25; ncol2=11; w=11; offset=4; strand=R; shift=4; score=0.556793; ----cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1618.1_rc_shift3 (Ptf1a_rc)
; oligos_6nt_mkv3_m16 versus MA1618.1_rc (Ptf1a_rc); m=10/25; ncol2=13; w=13; offset=3; strand=R; shift=3; score=0.535478; ---dmaaCATCTGtkh--- ; cor=; Ncor= a 0 0 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 c 0 0 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 g 0 0 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 t 0 0 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0

MA0745.2_shift4 (SNAI2)
; oligos_6nt_mkv3_m16 versus MA0745.2 (SNAI2); m=11/25; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.533757; ----aygCACCTGTmry-- ; cor=; Ncor= a 0 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 c 0 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 g 0 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 t 0 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0

MA1631.1_rc_shift3 (ASCL1(var.2)_rc)
; oligos_6nt_mkv3_m16 versus MA1631.1_rc (ASCL1(var.2)_rc); m=12/25; ncol2=13; w=13; offset=3; strand=R; shift=3; score=0.516495; ---gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0

MA1467.1_shift5 (ATOH1(var.2))
; oligos_6nt_mkv3_m16 versus MA1467.1 (ATOH1(var.2)); m=13/25; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.505797; -----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0816.1_rc_shift5 (Ascl2_rc)
; oligos_6nt_mkv3_m16 versus MA0816.1_rc (Ascl2_rc); m=14/25; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.504019; -----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA1472.1_shift5 (BHLHA15(var.2))
; oligos_6nt_mkv3_m16 versus MA1472.1 (BHLHA15(var.2)); m=15/25; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.501225; -----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA1100.2_shift5 (ASCL1)
; oligos_6nt_mkv3_m16 versus MA1100.2 (ASCL1); m=16/25; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.488799; -----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1635.1_rc_shift5 (BHLHE22(var.2)_rc)
; oligos_6nt_mkv3_m16 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=17/25; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.488308; -----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; oligos_6nt_mkv3_m16 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=18/25; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.483492; ----rmaCAGGTGtky--- ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0 0

MA0665.1_rc_shift5 (MSC_rc)
; oligos_6nt_mkv3_m16 versus MA0665.1_rc (MSC_rc); m=19/25; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.478802; -----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA0691.1_rc_shift5 (TFAP4_rc)
; oligos_6nt_mkv3_m16 versus MA0691.1_rc (TFAP4_rc); m=20/25; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.468688; -----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA0048.2_rc_shift5 (NHLH1_rc)
; oligos_6nt_mkv3_m16 versus MA0048.2_rc (NHLH1_rc); m=21/25; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.460656; -----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA0667.1_shift5 (MYF6)
; oligos_6nt_mkv3_m16 versus MA0667.1 (MYF6); m=22/25; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.452181; -----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

MA1648.1_rc_shift4 (TCF12(var.2)_rc)
; oligos_6nt_mkv3_m16 versus MA1648.1_rc (TCF12(var.2)_rc); m=23/25; ncol2=11; w=11; offset=4; strand=R; shift=4; score=0.443197; ----srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0522.3_rc_shift4 (TCF3_rc)
; oligos_6nt_mkv3_m16 versus MA0522.3_rc (TCF3_rc); m=24/25; ncol2=11; w=11; offset=4; strand=R; shift=4; score=0.441583; ----ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA0820.1_shift5 (FIGLA)
; oligos_6nt_mkv3_m16 versus MA0820.1 (FIGLA); m=25/25; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.418272; -----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m16_shift0 ; 19 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m16_shift0 (local_words_8nt_m16local_words_8nt_m16)
; local_words_8nt_m16 (local_words_8nt_m16local_words_8nt_m16); m=0 (reference); ncol1=17; shift=0; ncol=17; vsaGACAGCTGCTGcks ; Alignment reference a 74 66 151 19 248 2 277 4 1 15 1 7 13 14 26 50 58 c 75 94 36 21 8 276 0 4 271 1 2 250 6 31 178 65 80 g 76 85 49 234 18 0 0 269 5 2 274 9 7 213 36 72 93 t 53 33 42 4 4 0 1 1 1 260 1 12 252 20 38 91 47

MA0832.1_shift1 (Tcf21)
; local_words_8nt_m16 versus MA0832.1 (Tcf21); m=1/18; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.628395; -ryAACAGCTGTTry-- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0499.2_rc_shift1 (MYOD1_rc)
; local_words_8nt_m16 versus MA0499.2_rc (MYOD1_rc); m=2/18; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.626676; -rkrACAGGTGcwg--- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; local_words_8nt_m16 versus MA1485.1_rc (FERD3L_rc); m=3/18; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.620235; -GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0500.2_rc_shift2 (MYOG_rc)
; local_words_8nt_m16 versus MA0500.2_rc (MYOG_rc); m=4/18; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.588436; --sarCAGCTGyts--- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0521.1_shift3 (Tcf12)
; local_words_8nt_m16 versus MA0521.1 (Tcf12); m=5/18; ncol2=11; w=11; offset=3; strand=D; shift=3; score= 0.5677; ---rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1641.1_shift2 (MYF5)
; local_words_8nt_m16 versus MA1641.1 (MYF5); m=6/18; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.567224; --gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; local_words_8nt_m16 versus MA1619.1 (Ptf1a(var.2)); m=7/18; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.562158; --rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0745.2_rc_shift1 (SNAI2_rc)
; local_words_8nt_m16 versus MA0745.2_rc (SNAI2_rc); m=8/18; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.53566; -rykACAGGTGcrt--- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; local_words_8nt_m16 versus MA1467.1_rc (ATOH1(var.2)_rc); m=9/18; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.520665; ---RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0816.1_rc_shift3 (Ascl2_rc)
; local_words_8nt_m16 versus MA0816.1_rc (Ascl2_rc); m=10/18; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.507714; ---rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; local_words_8nt_m16 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/18; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.502078; ---rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; local_words_8nt_m16 versus MA1100.2_rc (ASCL1_rc); m=12/18; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.491754; ---rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA0665.1_shift3 (MSC)
; local_words_8nt_m16 versus MA0665.1 (MSC); m=13/18; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.483884; ---AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; local_words_8nt_m16 versus MA1635.1 (BHLHE22(var.2)); m=14/18; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.482156; ---csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA0691.1_shift3 (TFAP4)
; local_words_8nt_m16 versus MA0691.1 (TFAP4); m=15/18; ncol2=10; w=10; offset=3; strand=D; shift=3; score= 0.4663; ---AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; local_words_8nt_m16 versus MA0667.1_rc (MYF6_rc); m=16/18; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.45922; ---RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0048.2_shift3 (NHLH1)
; local_words_8nt_m16 versus MA0048.2 (NHLH1); m=17/18; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.455917; ---cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; local_words_8nt_m16 versus MA0820.1_rc (FIGLA_rc); m=18/18; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.414619; ---wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m13_shift0 ; 22 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m13_shift0 (local_words_8nt_m13local_words_8nt_m13)
; local_words_8nt_m13 (local_words_8nt_m13local_words_8nt_m13); m=0 (reference); ncol1=17; shift=0; ncol=17; sgstGACAGCTGCTccs ; Alignment reference a 58 60 39 27 5 244 2 288 1 0 1 1 3 17 17 57 55 c 92 70 75 28 7 17 286 0 4 282 1 0 259 16 187 107 82 g 83 96 151 47 274 17 2 2 283 7 0 288 13 19 58 59 103 t 57 64 25 188 4 12 0 0 2 1 288 1 15 238 28 67 50

MA0499.2_rc_shift2 (MYOD1_rc)
; local_words_8nt_m13 versus MA0499.2_rc (MYOD1_rc); m=1/21; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.627789; --rkrACAGGTGcwg-- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_8nt_m13 versus MA1485.1_rc (FERD3L_rc); m=2/21; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.617932; --GTrACAGCTGkyrC- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0

MA0832.1_shift2 (Tcf21)
; local_words_8nt_m13 versus MA0832.1 (Tcf21); m=3/21; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.608806; --ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0

MA0500.2_shift3 (MYOG)
; local_words_8nt_m13 versus MA0500.2 (MYOG); m=4/21; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.588085; ---sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA1641.1_shift3 (MYF5)
; local_words_8nt_m13 versus MA1641.1 (MYF5); m=5/21; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.572645; ---gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0

MA0521.1_shift4 (Tcf12)
; local_words_8nt_m13 versus MA0521.1 (Tcf12); m=6/21; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.565432; ----rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; local_words_8nt_m13 versus MA1619.1 (Ptf1a(var.2)); m=7/21; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.564857; ---rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA0745.2_rc_shift2 (SNAI2_rc)
; local_words_8nt_m13 versus MA0745.2_rc (SNAI2_rc); m=8/21; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.548263; --rykACAGGTGcrt-- ; cor=; Ncor= a 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 c 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 g 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 t 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; local_words_8nt_m13 versus MA1467.1_rc (ATOH1(var.2)_rc); m=9/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.522113; ----RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_8nt_m13 versus MA0816.1_rc (Ascl2_rc); m=10/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.504563; ----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; local_words_8nt_m13 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.501104; ----rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; local_words_8nt_m13 versus MA1100.2_rc (ASCL1_rc); m=12/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.495624; ----rgCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; local_words_8nt_m13 versus MA1635.1 (BHLHE22(var.2)); m=13/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.486839; ----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0

MA0665.1_shift4 (MSC)
; local_words_8nt_m13 versus MA0665.1 (MSC); m=14/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.476413; ----AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; local_words_8nt_m13 versus MA0691.1_rc (TFAP4_rc); m=15/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.460007; ----AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; local_words_8nt_m13 versus MA1648.1 (TCF12(var.2)); m=16/21; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.455843; ----ssCACCTGCys-- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; local_words_8nt_m13 versus MA0048.2_rc (NHLH1_rc); m=17/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.454633; ----mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA0522.3_shift4 (TCF3)
; local_words_8nt_m13 versus MA0522.3 (TCF3); m=18/21; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.454321; ----svCACCTGCss-- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; local_words_8nt_m13 versus MA0667.1_rc (MYF6_rc); m=19/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.451414; ----RACAGyTGTT--- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0

MA0820.1_rc_shift4 (FIGLA_rc)
; local_words_8nt_m13 versus MA0820.1_rc (FIGLA_rc); m=20/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.414444; ----wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0

MA0774.1_shift2 (MEIS2)
; local_words_8nt_m13 versus MA0774.1 (MEIS2); m=21/21; ncol2=8; w=8; offset=2; strand=D; shift=2; score=0.414291; --tTGACAGs------- ; cor=; Ncor= a 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 0 c 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 0 g 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 0 t 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m36_shift3 ; 18 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m36_shift3 (dyads_m36dyads_m36)
; dyads_m36 (dyads_m36dyads_m36); m=0 (reference); ncol1=13; shift=3; ncol=16; ---vcACCTGCCCCbs ; Alignment reference a 0 0 0 55 21 143 1 1 2 5 2 0 2 14 38 27 c 0 0 0 64 105 28 195 197 4 11 196 194 177 169 63 83 g 0 0 0 51 45 13 5 3 3 186 2 3 20 7 51 60 t 0 0 0 34 33 20 3 3 195 2 4 7 5 14 52 34

MA1513.1_shift4 (KLF15)
; dyads_m36 versus MA1513.1 (KLF15); m=1/17; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.627294; ----scCCCGCCCcs- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0

MA1631.1_shift1 (ASCL1(var.2))
; dyads_m36 versus MA1631.1 (ASCL1(var.2)); m=2/17; ncol2=13; w=11; offset=-2; strand=D; shift=1; score=0.622549; -cdgCACCTGCysc-- ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0522.3_shift2 (TCF3)
; dyads_m36 versus MA0522.3 (TCF3); m=3/17; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.608247; --svCACCTGCss--- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA1648.1_shift2 (TCF12(var.2))
; dyads_m36 versus MA1648.1 (TCF12(var.2)); m=4/17; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.607329; --ssCACCTGCys--- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0830.2_shift1 (TCF4)
; dyads_m36 versus MA0830.2 (TCF4); m=5/17; ncol2=13; w=11; offset=-2; strand=D; shift=1; score=0.596555; -cggCACCTGccss-- ; cor=; Ncor= a 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA0103.3_shift2 (ZEB1)
; dyads_m36 versus MA0103.3 (ZEB1); m=6/17; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.584736; --ssCACCTGsss--- ; cor=; Ncor= a 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 c 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 g 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 t 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0

MA1627.1_shift4 (Wt1)
; dyads_m36 versus MA1627.1 (Wt1); m=7/17; ncol2=14; w=12; offset=1; strand=D; shift=4; score=0.57451; ----cycCTCCCCCAC ; cor=; Ncor= a 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 c 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 g 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 t 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0

MA1558.1_rc_shift2 (SNAI1_rc)
; dyads_m36 versus MA1558.1_rc (SNAI1_rc); m=8/17; ncol2=10; w=9; offset=-1; strand=R; shift=2; score= 0.5482; --yrCACCTGyh---- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0

MA1630.1_rc_shift6 (Znf281_rc)
; dyads_m36 versus MA1630.1_rc (Znf281_rc); m=9/17; ncol2=11; w=10; offset=3; strand=R; shift=6; score=0.533153; ------CcTCCCCCAc ; cor=; Ncor= a 0 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 c 0 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 g 0 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 t 0 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0

MA0597.1_shift7 (THAP1)
; dyads_m36 versus MA0597.1 (THAP1); m=10/17; ncol2=9; w=9; offset=4; strand=D; shift=7; score=0.526249; -------ytGCCMkya ; cor=; Ncor= a 0 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 c 0 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 g 0 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 t 0 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0

MA0738.1_shift7 (HIC2)
; dyads_m36 versus MA0738.1 (HIC2); m=11/17; ncol2=9; w=9; offset=4; strand=D; shift=7; score=0.503668; -------rTGCCMrsy ; cor=; Ncor= a 0 0 0 0 0 0 0 2606.0 0.0 494.0 23.0 435.0 1466.0 2493.0 770.0 760.0 c 0 0 0 0 0 0 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 710.0 2200.0 1732.0 g 0 0 0 0 0 0 0 2285.0 0.0 4891.0 14.0 0.0 0.0 1290.0 1237.0 1001.0 t 0 0 0 0 0 0 0 367.0 4891.0 151.0 0.0 59.0 0.0 399.0 684.0 1398.0

MA1559.1_rc_shift2 (SNAI3_rc)
; dyads_m36 versus MA1559.1_rc (SNAI3_rc); m=12/17; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.503335; --trCACCTGyt---- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0

MA1621.1_shift0 (Rbpjl)
; dyads_m36 versus MA1621.1 (Rbpjl); m=13/17; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.485425; svmaCACCTGtsyc-- ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0

MA1493.1_rc_shift2 (HES6_rc)
; dyads_m36 versus MA1493.1_rc (HES6_rc); m=14/17; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.465291; --rACACGTGCC---- ; cor=; Ncor= a 0 0 209.0 439.0 0.0 439.0 0.0 16.0 11.0 15.0 13.0 43.0 0 0 0 0 c 0 0 0.0 0.0 439.0 29.0 439.0 9.0 9.0 19.0 439.0 439.0 0 0 0 0 g 0 0 152.0 21.0 0.0 7.0 12.0 439.0 0.0 439.0 35.0 39.0 0 0 0 0 t 0 0 79.0 33.0 0.0 0.0 10.0 2.0 439.0 17.0 16.0 12.0 0 0 0 0

MA0616.2_rc_shift2 (HES2_rc)
; dyads_m36 versus MA0616.2_rc (HES2_rc); m=15/17; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.452676; --grCACGTGcC---- ; cor=; Ncor= a 0 0 1319.0 3849.0 0.0 8483.0 0.0 129.0 0.0 73.0 1581.0 798.0 0 0 0 0 c 0 0 1735.0 1289.0 8483.0 0.0 8483.0 0.0 2028.0 85.0 8483.0 8483.0 0 0 0 0 g 0 0 4464.0 4634.0 15.0 1098.0 0.0 8483.0 0.0 8483.0 1107.0 1193.0 0 0 0 0 t 0 0 966.0 512.0 53.0 0.0 0.0 0.0 6455.0 118.0 1501.0 775.0 0 0 0 0

MA0820.1_shift2 (FIGLA)
; dyads_m36 versus MA0820.1 (FIGLA); m=16/17; ncol2=10; w=9; offset=-1; strand=D; shift=2; score=0.452162; --wmCACCTGkw---- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

MA1100.2_rc_shift2 (ASCL1_rc)
; dyads_m36 versus MA1100.2_rc (ASCL1_rc); m=17/17; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.450726; --rgCAGCTGyy---- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m17_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m17_shift0 (oligos_7nt_mkv4_m17oligos_7nt_mkv4_m17)
; oligos_7nt_mkv4_m17 (oligos_7nt_mkv4_m17oligos_7nt_mkv4_m17); m=0 (reference); ncol1=14; shift=0; ncol=15; sctGCCCTGCCChs- ; Alignment reference a 18 22 35 1 3 0 2 3 1 3 2 3 60 17 0 c 106 113 16 6 206 214 215 16 18 200 215 213 66 86 0 g 59 48 23 208 2 1 1 3 186 5 2 2 25 71 0 t 36 36 145 4 8 4 1 197 14 11 0 1 68 45 0

MA1513.1_shift3 (KLF15)
; oligos_7nt_mkv4_m17 versus MA1513.1 (KLF15); m=1/4; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.625281; ---scCCCGCCCcs- ; cor=; Ncor= a 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 c 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 g 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 t 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0

MA0599.1_shift3 (KLF5)
; oligos_7nt_mkv4_m17 versus MA0599.1 (KLF5); m=2/4; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.547342; ---gCCMCrCCCh-- ; cor=; Ncor= a 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0

MA0597.1_shift6 (THAP1)
; oligos_7nt_mkv4_m17 versus MA0597.1 (THAP1); m=3/4; ncol2=9; w=8; offset=6; strand=D; shift=6; score=0.474343; ------ytGCCMkya ; cor=; Ncor= a 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 c 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 g 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 t 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0

MA0738.1_shift6 (HIC2)
; oligos_7nt_mkv4_m17 versus MA0738.1 (HIC2); m=4/4; ncol2=9; w=8; offset=6; strand=D; shift=6; score=0.415384; ------rTGCCMrsy ; cor=; Ncor= a 0 0 0 0 0 0 2606.0 0.0 494.0 23.0 435.0 1466.0 2493.0 770.0 760.0 c 0 0 0 0 0 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 710.0 2200.0 1732.0 g 0 0 0 0 0 0 2285.0 0.0 4891.0 14.0 0.0 0.0 1290.0 1237.0 1001.0 t 0 0 0 0 0 0 367.0 4891.0 151.0 0.0 59.0 0.0 399.0 684.0 1398.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m20_shift7 ; 12 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m20_shift7 (oligos_6nt_mkv3_m20oligos_6nt_mkv3_m20)
; oligos_6nt_mkv3_m20 (oligos_6nt_mkv3_m20oligos_6nt_mkv3_m20); m=0 (reference); ncol1=10; shift=7; ncol=17; -------ssAGGCCAss ; Alignment reference a 0 0 0 0 0 0 0 180 158 853 0 0 0 0 853 135 202 c 0 0 0 0 0 0 0 270 360 0 1 0 853 853 0 257 292 g 0 0 0 0 0 0 0 220 259 0 852 853 0 0 0 351 252 t 0 0 0 0 0 0 0 183 76 0 0 0 0 0 0 110 107

MA0160.1_shift8 (NR4A2)
; oligos_6nt_mkv3_m20 versus MA0160.1 (NR4A2); m=1/11; ncol2=8; w=8; offset=1; strand=D; shift=8; score=0.62262; --------aAGGTCAc- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8.0 13.0 0.0 3.0 2.0 0.0 14.0 3.0 0 c 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 2.0 13.0 0.0 8.0 0 g 0 0 0 0 0 0 0 0 3.0 1.0 13.0 11.0 0.0 0.0 0.0 2.0 0 t 0 0 0 0 0 0 0 0 1.0 0.0 1.0 0.0 10.0 1.0 0.0 0.0 0

MA1615.1_shift4 (Plagl1)
; oligos_6nt_mkv3_m20 versus MA1615.1 (Plagl1); m=2/11; ncol2=13; w=10; offset=-3; strand=D; shift=4; score=0.551231; ----ssctGGGGCCAss ; cor=; Ncor= a 0 0 0 0 2780.0 2888.0 2138.0 1919.0 197.0 1213.0 187.0 180.0 782.0 181.0 12064.0 2093.0 3414.0 c 0 0 0 0 4515.0 4401.0 7309.0 1471.0 243.0 356.0 266.0 336.0 12737.0 13152.0 686.0 4618.0 3614.0 g 0 0 0 0 4260.0 4030.0 3026.0 1338.0 13595.0 12261.0 13517.0 13495.0 313.0 422.0 1032.0 4852.0 4567.0 t 0 0 0 0 2598.0 2834.0 1680.0 9425.0 118.0 323.0 183.0 142.0 321.0 398.0 371.0 2590.0 2558.0

MA1540.1_shift5 (NR5A1)
; oligos_6nt_mkv3_m20 versus MA1540.1 (NR5A1); m=3/11; ncol2=11; w=9; offset=-2; strand=D; shift=5; score=0.548121; -----kyCAAGGyCry- ; cor=; Ncor= a 0 0 0 0 0 767.0 906.0 84.0 4118.0 4118.0 0.0 0.0 951.0 70.0 4118.0 849.0 0 c 0 0 0 0 0 991.0 1690.0 4118.0 0.0 128.0 0.0 0.0 2021.0 4118.0 242.0 1323.0 0 g 0 0 0 0 0 1268.0 902.0 716.0 287.0 137.0 4118.0 4118.0 381.0 218.0 1684.0 820.0 0 t 0 0 0 0 0 1093.0 2428.0 135.0 4.0 143.0 86.0 0.0 4118.0 651.0 287.0 1126.0 0

MA1150.1_shift5 (RORB)
; oligos_6nt_mkv3_m20 versus MA1150.1 (RORB); m=4/11; ncol2=11; w=9; offset=-2; strand=D; shift=5; score=0.544938; -----AwttrGGTCAy- ; cor=; Ncor= a 0 0 0 0 0 785.0 526.0 233.0 53.0 602.0 16.0 32.0 28.0 47.0 896.0 205.0 0 c 0 0 0 0 0 14.0 26.0 162.0 165.0 14.0 25.0 13.0 146.0 781.0 15.0 326.0 0 g 0 0 0 0 0 29.0 24.0 201.0 235.0 358.0 907.0 928.0 50.0 17.0 63.0 145.0 0 t 0 0 0 0 0 172.0 425.0 403.0 547.0 26.0 52.0 27.0 776.0 155.0 26.0 324.0 0

MA0505.1_shift2 (Nr5a2)
; oligos_6nt_mkv3_m20 versus MA0505.1 (Nr5a2); m=5/11; ncol2=15; w=10; offset=-5; strand=D; shift=2; score=0.50947; --ragtTCAAGGyCAgs ; cor=; Ncor= a 0 0 645.0 985.0 276.0 122.0 71.0 8.0 1685.0 1679.0 39.0 0.0 169.0 0.0 1437.0 271.0 249.0 c 0 0 224.0 170.0 198.0 378.0 351.0 1616.0 14.0 0.0 0.0 0.0 584.0 1568.0 20.0 345.0 693.0 g 0 0 634.0 336.0 990.0 366.0 23.0 74.0 0.0 23.0 1663.0 1702.0 61.0 12.0 90.0 740.0 454.0 t 0 0 199.0 211.0 238.0 836.0 1257.0 4.0 3.0 0.0 0.0 0.0 888.0 122.0 155.0 346.0 306.0

MA0071.1_shift5 (RORA)
; oligos_6nt_mkv3_m20 versus MA0071.1 (RORA); m=6/11; ncol2=10; w=8; offset=-2; strand=D; shift=5; score=0.493396; -----wwcwAGGTCA-- ; cor=; Ncor= a 0 0 0 0 0 15.0 9.0 6.0 11.0 21.0 0.0 0.0 0.0 0.0 25.0 0 0 c 0 0 0 0 0 1.0 1.0 12.0 2.0 0.0 0.0 0.0 0.0 25.0 0.0 0 0 g 0 0 0 0 0 2.0 0.0 4.0 5.0 4.0 25.0 25.0 0.0 0.0 0.0 0 0 t 0 0 0 0 0 7.0 15.0 3.0 7.0 0.0 0.0 0.0 25.0 0.0 0.0 0 0

MA0146.2_rc_shift8 (Zfx_rc)
; oligos_6nt_mkv3_m20 versus MA0146.2_rc (Zfx_rc); m=7/11; ncol2=14; w=9; offset=1; strand=R; shift=8; score=0.487869; --------sAGGCCbvG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 56.0 480.0 1.0 0.0 1.0 1.0 15.0 144.0 112.0 c 0 0 0 0 0 0 0 0 218.0 0.0 0.0 0.0 477.0 470.0 122.0 183.0 2.0 g 0 0 0 0 0 0 0 0 122.0 1.0 480.0 481.0 3.0 2.0 153.0 124.0 361.0 t 0 0 0 0 0 0 0 0 84.0 0.0 0.0 0.0 0.0 8.0 191.0 30.0 6.0

MA0119.1_shift2 (NFIC::TLX1)
; oligos_6nt_mkv3_m20 versus MA0119.1 (NFIC::TLX1); m=8/11; ncol2=14; w=9; offset=-5; strand=D; shift=2; score=0.437906; --TGGCAssrwGCCAA- ; cor=; Ncor= a 0 0 0.0 0.0 0.0 0.0 14.0 2.0 2.0 7.0 4.0 0.0 0.0 0.0 16.0 14.0 0 c 0 0 0.0 0.0 0.0 16.0 1.0 8.0 8.0 1.0 3.0 0.0 16.0 16.0 0.0 0.0 0 g 0 0 0.0 16.0 16.0 0.0 0.0 5.0 4.0 5.0 2.0 16.0 0.0 0.0 0.0 1.0 0 t 0 0 16.0 0.0 0.0 0.0 1.0 1.0 2.0 3.0 7.0 0.0 0.0 0.0 0.0 1.0 0

MA1527.1_rc_shift0 (NFIC(var.2)_rc)
; oligos_6nt_mkv3_m20 versus MA1527.1_rc (NFIC(var.2)_rc); m=9/11; ncol2=17; w=10; offset=-7; strand=R; shift=0; score=0.426492; syTGGCAcsryGCCAAs ; cor=; Ncor= a 412.0 154.0 0.0 0.0 0.0 0.0 2118.0 379.0 417.0 531.0 461.0 0.0 0.0 0.0 2118.0 2118.0 399.0 c 647.0 1032.0 0.0 0.0 13.0 2118.0 97.0 881.0 678.0 492.0 694.0 0.0 2118.0 2118.0 5.0 65.0 761.0 g 695.0 19.0 0.0 2118.0 2118.0 0.0 340.0 382.0 580.0 705.0 268.0 2118.0 3.0 0.0 0.0 616.0 560.0 t 364.0 1086.0 2118.0 3.0 0.0 0.0 203.0 476.0 443.0 389.0 696.0 100.0 0.0 0.0 0.0 167.0 398.0

MA1528.1_rc_shift0 (NFIX(var.2)_rc)
; oligos_6nt_mkv3_m20 versus MA1528.1_rc (NFIX(var.2)_rc); m=10/11; ncol2=17; w=10; offset=-7; strand=R; shift=0; score=0.424919; syTGGCAcsryGCCAac ; cor=; Ncor= a 3443.0 3322.0 314.0 0.0 0.0 459.0 17346.0 3453.0 3525.0 4455.0 3262.0 175.0 0.0 0.0 17346.0 17346.0 3238.0 c 5740.0 9016.0 63.0 0.0 0.0 17346.0 1423.0 7942.0 5991.0 3846.0 5090.0 0.0 17346.0 17346.0 2386.0 3397.0 6640.0 g 5304.0 2165.0 1856.0 17346.0 17346.0 0.0 2300.0 2529.0 4769.0 5920.0 1890.0 17346.0 0.0 0.0 231.0 3912.0 4287.0 t 2858.0 8330.0 17346.0 0.0 0.0 0.0 1773.0 3423.0 3061.0 3125.0 7104.0 1819.0 0.0 0.0 127.0 4530.0 3182.0

MA1151.1_shift3 (RORC)
; oligos_6nt_mkv3_m20 versus MA1151.1 (RORC); m=11/11; ncol2=12; w=8; offset=-4; strand=D; shift=3; score=0.407627; ---dwAwgTrGGtCA-- ; cor=; Ncor= a 0 0 0 306.0 329.0 855.0 527.0 225.0 43.0 623.0 5.0 36.0 59.0 6.0 785.0 0 0 c 0 0 0 179.0 114.0 14.0 10.0 249.0 87.0 24.0 2.0 3.0 112.0 822.0 12.0 0 0 g 0 0 0 260.0 141.0 11.0 32.0 277.0 116.0 343.0 919.0 952.0 168.0 19.0 161.0 0 0 t 0 0 0 255.0 416.0 120.0 431.0 249.0 753.0 11.0 74.0 8.0 661.0 153.0 42.0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m19_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m19_shift0 (oligos_8nt_mkv5_m19oligos_8nt_mkv5_m19)
; oligos_8nt_mkv5_m19 (oligos_8nt_mkv5_m19oligos_8nt_mkv5_m19); m=0 (reference); ncol1=12; shift=0; ncol=12; bsTGCCCACAsm ; Alignment reference a 20 30 0 7 2 1 1 171 0 166 30 44 c 54 71 12 6 166 169 170 0 169 2 50 45 g 50 47 2 152 3 2 0 1 1 4 56 42 t 48 24 158 7 1 0 1 0 2 0 36 41

MA1601.1_rc_shift1 (ZNF75D_rc)
; oligos_8nt_mkv5_m19 versus MA1601.1_rc (ZNF75D_rc); m=1/4; ncol2=10; w=10; offset=1; strand=R; shift=1; score=0.621204; -TyTCCCACay- ; cor=; Ncor= a 0 512.0 396.0 18.0 28.0 124.0 5.0 6686.0 0.0 3519.0 1225.0 0 c 0 746.0 1693.0 15.0 6678.0 6545.0 6710.0 4.0 6757.0 1468.0 1850.0 0 g 0 256.0 576.0 20.0 29.0 44.0 18.0 59.0 0.0 715.0 1573.0 0 t 0 5245.0 4094.0 6706.0 24.0 46.0 26.0 10.0 2.0 1057.0 2111.0 0

MA0597.1_shift1 (THAP1)
; oligos_8nt_mkv5_m19 versus MA0597.1 (THAP1); m=2/4; ncol2=9; w=9; offset=1; strand=D; shift=1; score=0.608832; -ytGCCMkya-- ; cor=; Ncor= a 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 0 0 c 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 0 0 g 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 0 0 t 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0 0 0

MA0738.1_shift1 (HIC2)
; oligos_8nt_mkv5_m19 versus MA0738.1 (HIC2); m=3/4; ncol2=9; w=9; offset=1; strand=D; shift=1; score=0.595401; -rTGCCMrsy-- ; cor=; Ncor= a 0 2606.0 0.0 494.0 23.0 435.0 1466.0 2493.0 770.0 760.0 0 0 c 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 710.0 2200.0 1732.0 0 0 g 0 2285.0 0.0 4891.0 14.0 0.0 0.0 1290.0 1237.0 1001.0 0 0 t 0 367.0 4891.0 151.0 0.0 59.0 0.0 399.0 684.0 1398.0 0 0

MA0739.1_shift1 (Hic1)
; oligos_8nt_mkv5_m19 versus MA0739.1 (Hic1); m=4/4; ncol2=9; w=9; offset=1; strand=D; shift=1; score=0.526076; -rTGCCAaCc-- ; cor=; Ncor= a 0 6337.0 62.0 950.0 50.0 88.0 9008.0 6140.0 1220.0 1610.0 0 0 c 0 719.0 422.0 588.0 11007.0 11007.0 1999.0 1986.0 11007.0 4822.0 0 0 g 0 4670.0 73.0 11007.0 121.0 31.0 3.0 2267.0 1629.0 1884.0 0 0 t 0 666.0 11007.0 183.0 0.0 68.0 317.0 614.0 1488.0 2692.0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m35_shift1 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m35_shift1 (oligos_7nt_mkv4_m35oligos_7nt_mkv4_m35)
; oligos_7nt_mkv4_m35 (oligos_7nt_mkv4_m35oligos_7nt_mkv4_m35); m=0 (reference); ncol1=11; shift=1; ncol=14; -scAGCCCAGsm-- ; Alignment reference a 0 92 65 385 0 0 0 0 383 0 69 97 0 0 c 0 122 197 0 0 385 384 381 1 2 178 134 0 0 g 0 107 93 0 385 0 1 4 1 383 104 63 0 0 t 0 64 30 0 0 0 0 0 0 0 34 91 0 0

MA1656.1_shift0 (ZNF449)
; oligos_7nt_mkv4_m35 versus MA1656.1 (ZNF449); m=1/1; ncol2=14; w=11; offset=-1; strand=D; shift=0; score=0.617122; cvaAGCCCAACcas ; cor=; Ncor= a 1809.0 2104.0 4135.0 6239.0 108.0 139.0 64.0 68.0 6851.0 6620.0 184.0 1143.0 2595.0 1670.0 c 2716.0 2320.0 1759.0 582.0 92.0 7088.0 7540.0 7479.0 300.0 96.0 7244.0 5029.0 1875.0 2195.0 g 1566.0 1921.0 1463.0 224.0 7368.0 322.0 28.0 54.0 182.0 829.0 167.0 473.0 1585.0 2237.0 t 1569.0 1315.0 303.0 615.0 92.0 111.0 28.0 59.0 327.0 115.0 65.0 1015.0 1605.0 1558.0

One-to-n matrix alignment; reference matrix: dyads_m29_shift2 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m29_shift2 (dyads_m29dyads_m29)
; dyads_m29 (dyads_m29dyads_m29); m=0 (reference); ncol1=10; shift=2; ncol=14; --ssCACAGAsv-- ; Alignment reference a 0 0 169 158 0 686 0 684 0 686 135 201 0 0 c 0 0 184 256 686 0 686 1 0 0 191 174 0 0 g 0 0 219 184 0 0 0 1 686 0 242 221 0 0 t 0 0 114 88 0 0 0 0 0 0 118 90 0 0

MA0002.2_rc_shift0 (RUNX1_rc)
; dyads_m29 versus MA0002.2_rc (RUNX1_rc); m=1/3; ncol2=11; w=9; offset=-2; strand=R; shift=0; score=0.61476; waaCCACAram--- ; cor=; Ncor= a 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 0 0 c 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 0 0 g 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 0 0 t 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0 0 0

MA1646.1_shift3 (OSR2)
; dyads_m29 versus MA1646.1 (OSR2); m=2/3; ncol2=12; w=9; offset=1; strand=D; shift=3; score=0.50295; ---amaCAGAAGCh ; cor=; Ncor= a 0 0 0 4437.0 4244.0 8520.0 254.0 13599.0 216.0 11678.0 13725.0 416.0 666.0 4386.0 c 0 0 0 3641.0 4206.0 2221.0 13937.0 197.0 229.0 703.0 288.0 170.0 12109.0 4274.0 g 0 0 0 3246.0 3006.0 2117.0 406.0 737.0 14206.0 901.0 516.0 13982.0 841.0 2266.0 t 0 0 0 3484.0 3352.0 1950.0 211.0 275.0 157.0 1526.0 279.0 240.0 1192.0 3882.0

MA1618.1_shift3 (Ptf1a)
; dyads_m29 versus MA1618.1 (Ptf1a); m=3/3; ncol2=13; w=9; offset=1; strand=D; shift=3; score=0.455817; ---dmaCAGATGtt ; cor=; Ncor= a 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 c 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 g 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 t 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m42_shift3 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m42_shift3 (oligos_8nt_mkv5_m42oligos_8nt_mkv5_m42)
; oligos_8nt_mkv5_m42 (oligos_8nt_mkv5_m42oligos_8nt_mkv5_m42); m=0 (reference); ncol1=12; shift=3; ncol=15; ---vsCACAGCACag ; Alignment reference a 0 0 0 44 29 2 153 1 148 1 3 145 0 64 19 c 0 0 0 46 50 155 1 151 3 5 149 3 157 34 39 g 0 0 0 42 55 0 2 1 6 147 1 8 0 30 65 t 0 0 0 25 23 0 1 4 0 4 4 1 0 29 34

MA1629.1_shift3 (Zic2)
; oligos_8nt_mkv5_m42 versus MA1629.1 (Zic2); m=1/4; ncol2=14; w=12; offset=0; strand=D; shift=3; score=0.612571; ---mkCaCAGCAGGr ; cor=; Ncor= a 0 0 0 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 c 0 0 0 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 g 0 0 0 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 t 0 0 0 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0

MA0483.1_shift1 (Gfi1b)
; oligos_8nt_mkv5_m42 versus MA0483.1 (Gfi1b); m=2/4; ncol2=11; w=9; offset=-2; strand=D; shift=1; score=0.469147; -aAATCwCwGCw--- ; cor=; Ncor= a 0 1124.0 1761.0 1759.0 0.0 0.0 1033.0 61.0 1116.0 57.0 142.0 740.0 0 0 0 c 0 438.0 0.0 0.0 338.0 1761.0 21.0 1312.0 0.0 1.0 1328.0 433.0 0 0 0 g 0 104.0 0.0 2.0 28.0 0.0 0.0 388.0 1.0 1676.0 76.0 130.0 0 0 0 t 0 95.0 0.0 0.0 1395.0 0.0 707.0 0.0 644.0 27.0 215.0 458.0 0 0 0

MA0002.2_rc_shift1 (RUNX1_rc)
; oligos_8nt_mkv5_m42 versus MA0002.2_rc (RUNX1_rc); m=3/4; ncol2=11; w=9; offset=-2; strand=R; shift=1; score=0.464823; -waaCCACAram--- ; cor=; Ncor= a 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 0 0 c 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 0 0 g 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 0 0 t 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0 0 0

MA0038.2_shift0 (GFI1)
; oligos_8nt_mkv5_m42 versus MA0038.2 (GFI1); m=4/4; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.429402; cmAATCACdGCa--- ; cor=; Ncor= a 3668.0 19146.0 30168.0 30150.0 0.0 15.0 29255.0 838.0 7748.0 2294.0 292.0 16713.0 0 0 0 c 11575.0 10155.0 2.0 0.0 0.0 30139.0 0.0 27769.0 54.0 266.0 27891.0 5221.0 0 0 0 g 7376.0 812.0 0.0 0.0 0.0 0.0 0.0 3888.0 8349.0 27514.0 0.0 4079.0 0 0 0 t 7527.0 565.0 0.0 1.0 30161.0 10.0 1594.0 0.0 13996.0 888.0 3702.0 4134.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m7_shift0 ; 26 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m7_shift0 (oligos_7nt_mkv4_m7oligos_7nt_mkv4_m7)
; oligos_7nt_mkv4_m7 (oligos_7nt_mkv4_m7oligos_7nt_mkv4_m7); m=0 (reference); ncol1=13; shift=0; ncol=18; svGgAGCAGCTGy----- ; Alignment reference a 228 253 156 103 955 21 2 960 0 4 2 35 127 0 0 0 0 0 c 273 247 45 214 9 2 964 5 2 957 11 42 355 0 0 0 0 0 g 294 323 666 607 4 945 3 6 965 7 8 869 219 0 0 0 0 0 t 176 148 104 47 3 3 2 0 4 3 950 25 270 0 0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; oligos_7nt_mkv4_m7 versus MA0816.1_rc (Ascl2_rc); m=1/25; ncol2=10; w=9; offset=4; strand=R; shift=4; score=0.611111; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; oligos_7nt_mkv4_m7 versus MA0521.1_rc (Tcf12_rc); m=2/25; ncol2=11; w=10; offset=3; strand=R; shift=3; score=0.610286; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1529.1_shift0 (NHLH2)
; oligos_7nt_mkv4_m7 versus MA1529.1 (NHLH2); m=3/25; ncol2=18; w=13; offset=0; strand=D; shift=0; score=0.605308; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0500.2_rc_shift3 (MYOG_rc)
; oligos_7nt_mkv4_m7 versus MA0500.2_rc (MYOG_rc); m=4/25; ncol2=12; w=10; offset=3; strand=R; shift=3; score=0.602513; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; oligos_7nt_mkv4_m7 versus MA0048.2_rc (NHLH1_rc); m=5/25; ncol2=10; w=9; offset=4; strand=R; shift=4; score=0.583311; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1100.2_shift4 (ASCL1)
; oligos_7nt_mkv4_m7 versus MA1100.2 (ASCL1); m=6/25; ncol2=10; w=9; offset=4; strand=D; shift=4; score=0.570231; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; oligos_7nt_mkv4_m7 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=7/25; ncol2=10; w=9; offset=4; strand=R; shift=4; score=0.564978; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; oligos_7nt_mkv4_m7 versus MA1472.1 (BHLHA15(var.2)); m=8/25; ncol2=10; w=9; offset=4; strand=D; shift=4; score=0.558994; ----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA0091.1_shift2 (TAL1::TCF3)
; oligos_7nt_mkv4_m7 versus MA0091.1 (TAL1::TCF3); m=9/25; ncol2=12; w=11; offset=2; strand=D; shift=2; score=0.551866; --mgAmCAKMTGkT---- ; cor=; Ncor= a 0 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 c 0 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 g 0 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 t 0 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; oligos_7nt_mkv4_m7 versus MA1631.1_rc (ASCL1(var.2)_rc); m=10/25; ncol2=13; w=11; offset=2; strand=R; shift=2; score=0.550327; --gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; oligos_7nt_mkv4_m7 versus MA0691.1_rc (TFAP4_rc); m=11/25; ncol2=10; w=9; offset=4; strand=R; shift=4; score=0.545643; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; oligos_7nt_mkv4_m7 versus MA1467.1 (ATOH1(var.2)); m=12/25; ncol2=10; w=9; offset=4; strand=D; shift=4; score=0.540532; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; oligos_7nt_mkv4_m7 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=13/25; ncol2=12; w=10; offset=3; strand=R; shift=3; score=0.540261; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; oligos_7nt_mkv4_m7 versus MA1641.1_rc (MYF5_rc); m=14/25; ncol2=12; w=10; offset=3; strand=R; shift=3; score=0.536439; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; oligos_7nt_mkv4_m7 versus MA1648.1_rc (TCF12(var.2)_rc); m=15/25; ncol2=11; w=10; offset=3; strand=R; shift=3; score=0.535052; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; oligos_7nt_mkv4_m7 versus MA0665.1_rc (MSC_rc); m=16/25; ncol2=10; w=9; offset=4; strand=R; shift=4; score=0.533712; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA1485.1_shift2 (FERD3L)
; oligos_7nt_mkv4_m7 versus MA1485.1 (FERD3L); m=17/25; ncol2=14; w=11; offset=2; strand=D; shift=2; score=0.533319; --GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0522.3_rc_shift3 (TCF3_rc)
; oligos_7nt_mkv4_m7 versus MA0522.3_rc (TCF3_rc); m=18/25; ncol2=11; w=10; offset=3; strand=R; shift=3; score=0.531078; ---ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA0832.1_shift2 (Tcf21)
; oligos_7nt_mkv4_m7 versus MA0832.1 (Tcf21); m=19/25; ncol2=14; w=11; offset=2; strand=D; shift=2; score=0.530406; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; oligos_7nt_mkv4_m7 versus MA0830.2_rc (TCF4_rc); m=20/25; ncol2=13; w=11; offset=2; strand=R; shift=2; score=0.520416; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA0667.1_shift4 (MYF6)
; oligos_7nt_mkv4_m7 versus MA0667.1 (MYF6); m=21/25; ncol2=10; w=9; offset=4; strand=D; shift=4; score=0.482617; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0499.2_shift3 (MYOD1)
; oligos_7nt_mkv4_m7 versus MA0499.2 (MYOD1); m=22/25; ncol2=13; w=10; offset=3; strand=D; shift=3; score=0.466913; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA0820.1_shift4 (FIGLA)
; oligos_7nt_mkv4_m7 versus MA0820.1 (FIGLA); m=23/25; ncol2=10; w=9; offset=4; strand=D; shift=4; score=0.465707; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0

MA1559.1_shift4 (SNAI3)
; oligos_7nt_mkv4_m7 versus MA1559.1 (SNAI3); m=24/25; ncol2=10; w=9; offset=4; strand=D; shift=4; score=0.454792; ----arCAGGTGya---- ; cor=; Ncor= a 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0

MA1558.1_shift4 (SNAI1)
; oligos_7nt_mkv4_m7 versus MA1558.1 (SNAI1); m=25/25; ncol2=10; w=9; offset=4; strand=D; shift=4; score=0.453715; ----drCAGGTGyr---- ; cor=; Ncor= a 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 0 c 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 0 g 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 0 t 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m30_shift4 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m30_shift4 (oligos_6nt_mkv3_m30oligos_6nt_mkv3_m30)
; oligos_6nt_mkv3_m30 (oligos_6nt_mkv3_m30oligos_6nt_mkv3_m30); m=0 (reference); ncol1=11; shift=4; ncol=17; ----ssCAGGGCAgv-- ; Alignment reference a 0 0 0 0 64 93 4 446 0 0 0 0 446 52 112 0 0 c 0 0 0 0 120 128 433 0 1 1 0 446 0 95 140 0 0 g 0 0 0 0 168 164 6 0 445 445 446 0 0 252 149 0 0 t 0 0 0 0 94 61 3 0 0 0 0 0 0 47 45 0 0

MA0597.1_rc_shift5 (THAP1_rc)
; oligos_6nt_mkv3_m30 versus MA0597.1_rc (THAP1_rc); m=1/7; ncol2=9; w=9; offset=1; strand=R; shift=5; score=0.611034; -----trmKGGCar--- ; cor=; Ncor= a 0 0 0 0 0 32.0 57.0 58.0 4.0 1.0 10.0 42.0 125.0 61.0 0 0 0 c 0 0 0 0 0 17.0 41.0 77.0 1.0 0.0 0.0 137.0 12.0 27.0 0 0 0 g 0 0 0 0 0 34.0 71.0 17.0 136.0 195.0 182.0 0.0 47.0 93.0 0 0 0 t 0 0 0 0 0 116.0 30.0 47.0 58.0 3.0 7.0 20.0 15.0 18.0 0 0 0

MA0738.1_rc_shift5 (HIC2_rc)
; oligos_6nt_mkv3_m30 versus MA0738.1_rc (HIC2_rc); m=2/7; ncol2=9; w=9; offset=1; strand=R; shift=5; score=0.588131; -----rsyKGGCAy--- ; cor=; Ncor= a 0 0 0 0 0 1398.0 684.0 399.0 0.0 59.0 0.0 151.0 4891.0 367.0 0 0 0 c 0 0 0 0 0 1001.0 1237.0 1290.0 0.0 0.0 14.0 4891.0 0.0 2285.0 0 0 0 g 0 0 0 0 0 1732.0 2200.0 710.0 3425.0 4891.0 4891.0 354.0 117.0 394.0 0 0 0 t 0 0 0 0 0 760.0 770.0 2493.0 1466.0 435.0 23.0 494.0 0.0 2606.0 0 0 0

MA0872.1_rc_shift0 (TFAP2A(var.3)_rc)
; oligos_6nt_mkv3_m30 versus MA0872.1_rc (TFAP2A(var.3)_rc); m=3/7; ncol2=13; w=9; offset=-4; strand=R; shift=0; score=0.478635; tGCCCysrGGGCa---- ; cor=; Ncor= a 260.0 0.0 0.0 0.0 53.0 75.0 251.0 650.0 131.0 0.0 0.0 0.0 837.0 0 0 0 0 c 198.0 366.0 1903.0 1911.0 1420.0 538.0 546.0 212.0 95.0 0.0 0.0 1359.0 134.0 0 0 0 0 g 102.0 1099.0 0.0 0.0 66.0 224.0 506.0 524.0 1115.0 1373.0 1368.0 357.0 154.0 0 0 0 0 t 721.0 0.0 0.0 0.0 192.0 556.0 188.0 55.0 48.0 0.0 0.0 0.0 262.0 0 0 0 0

MA0813.1_rc_shift0 (TFAP2B(var.3)_rc)
; oligos_6nt_mkv3_m30 versus MA0813.1_rc (TFAP2B(var.3)_rc); m=4/7; ncol2=13; w=9; offset=-4; strand=R; shift=0; score=0.474079; tGCCCyvrGGGCa---- ; cor=; Ncor= a 226.0 0.0 0.0 0.0 11.0 41.0 384.0 571.0 136.0 0.0 0.0 0.0 751.0 0 0 0 0 c 179.0 163.0 1346.0 1236.0 837.0 367.0 392.0 132.0 22.0 0.0 0.0 1063.0 95.0 0 0 0 0 g 106.0 897.0 0.0 0.0 53.0 200.0 345.0 469.0 774.0 871.0 924.0 329.0 153.0 0 0 0 0 t 650.0 0.0 0.0 0.0 292.0 583.0 147.0 32.0 5.0 0.0 0.0 0.0 306.0 0 0 0 0

MA0815.1_rc_shift0 (TFAP2C(var.3)_rc)
; oligos_6nt_mkv3_m30 versus MA0815.1_rc (TFAP2C(var.3)_rc); m=5/7; ncol2=13; w=9; offset=-4; strand=R; shift=0; score=0.471091; tGCCCysrGGGCa---- ; cor=; Ncor= a 435.0 0.0 0.0 0.0 20.0 73.0 425.0 1217.0 330.0 0.0 0.0 0.0 1466.0 0 0 0 0 c 343.0 519.0 3137.0 3082.0 2359.0 984.0 924.0 404.0 95.0 0.0 0.0 2379.0 215.0 0 0 0 0 g 174.0 2128.0 0.0 0.0 110.0 362.0 913.0 1001.0 2073.0 2408.0 2496.0 659.0 350.0 0 0 0 0 t 1282.0 0.0 0.0 0.0 380.0 1013.0 365.0 89.0 17.0 0.0 0.0 0.0 532.0 0 0 0 0

MA1597.1_shift4 (ZNF528)
; oligos_6nt_mkv3_m30 versus MA1597.1 (ZNF528); m=6/7; ncol2=17; w=11; offset=0; strand=D; shift=4; score=0.467824; ----cccAGGGAAGcCA ; cor=; Ncor= a 0 0 0 0 84.0 69.0 100.0 524.0 32.0 7.0 22.0 608.0 579.0 5.0 35.0 15.0 606.0 c 0 0 0 0 380.0 367.0 404.0 12.0 3.0 5.0 2.0 3.0 4.0 1.0 414.0 590.0 2.0 g 0 0 0 0 66.0 87.0 64.0 61.0 573.0 598.0 590.0 3.0 26.0 608.0 54.0 3.0 7.0 t 0 0 0 0 86.0 93.0 48.0 19.0 8.0 6.0 2.0 2.0 7.0 2.0 113.0 8.0 1.0

MA0524.2_shift1 (TFAP2C)
; oligos_6nt_mkv3_m30 versus MA0524.2 (TFAP2C); m=7/7; ncol2=12; w=9; offset=-3; strand=D; shift=1; score=0.451581; -tGCCyyrrGGCa---- ; cor=; Ncor= a 0 1289.0 878.0 70.0 24.0 37.0 516.0 2405.0 2216.0 163.0 111.0 254.0 3485.0 0 0 0 0 c 0 1427.0 1693.0 5834.0 5834.0 3594.0 2124.0 1450.0 341.0 12.0 742.0 5834.0 389.0 0 0 0 0 g 0 308.0 5834.0 621.0 9.0 384.0 1327.0 1702.0 3261.0 5834.0 5834.0 1172.0 1035.0 0 0 0 0 t 0 2810.0 139.0 51.0 121.0 1820.0 1867.0 277.0 17.0 16.0 37.0 599.0 925.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m24_shift0 ; 18 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m24_shift0 (local_words_8nt_m24local_words_8nt_m24)
; local_words_8nt_m24 (local_words_8nt_m24local_words_8nt_m24); m=0 (reference); ncol1=18; shift=0; ncol=18; sgstGACAGCTGCTGcbs ; Alignment reference a 44 65 53 33 10 243 2 275 4 2 11 1 3 16 18 29 59 57 c 94 69 110 30 11 9 275 0 2 269 2 1 258 8 41 172 73 78 g 82 91 84 42 253 18 0 2 272 6 1 273 7 14 198 38 74 90 t 58 53 31 173 4 8 1 1 0 1 264 3 10 240 21 39 72 53

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_8nt_m24 versus MA1485.1_rc (FERD3L_rc); m=1/17; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.610087; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; local_words_8nt_m24 versus MA0499.2_rc (MYOD1_rc); m=2/17; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.593807; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0832.1_shift2 (Tcf21)
; local_words_8nt_m24 versus MA0832.1 (Tcf21); m=3/17; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.584616; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0500.2_shift3 (MYOG)
; local_words_8nt_m24 versus MA0500.2 (MYOG); m=4/17; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.551961; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA0521.1_shift4 (Tcf12)
; local_words_8nt_m24 versus MA0521.1 (Tcf12); m=5/17; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.536077; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1641.1_shift3 (MYF5)
; local_words_8nt_m24 versus MA1641.1 (MYF5); m=6/17; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.53093; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; local_words_8nt_m24 versus MA1619.1 (Ptf1a(var.2)); m=7/17; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.524873; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0745.2_rc_shift2 (SNAI2_rc)
; local_words_8nt_m24 versus MA0745.2_rc (SNAI2_rc); m=8/17; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.511589; --rykACAGGTGcrt--- ; cor=; Ncor= a 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 c 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 g 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 t 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; local_words_8nt_m24 versus MA1467.1_rc (ATOH1(var.2)_rc); m=9/17; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.489208; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; local_words_8nt_m24 versus MA0816.1_rc (Ascl2_rc); m=10/17; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.475476; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; local_words_8nt_m24 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/17; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.469704; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; local_words_8nt_m24 versus MA1100.2_rc (ASCL1_rc); m=12/17; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.463757; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; local_words_8nt_m24 versus MA1635.1 (BHLHE22(var.2)); m=13/17; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.454074; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA0665.1_shift4 (MSC)
; local_words_8nt_m24 versus MA0665.1 (MSC); m=14/17; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.449162; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; local_words_8nt_m24 versus MA0691.1 (TFAP4); m=15/17; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.432425; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; local_words_8nt_m24 versus MA0048.2 (NHLH1); m=16/17; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.427516; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; local_words_8nt_m24 versus MA0667.1_rc (MYF6_rc); m=17/17; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.426048; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_7nt_m19_shift0 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m19_shift0 (local_words_7nt_m19local_words_7nt_m19)
; local_words_7nt_m19 (local_words_7nt_m19local_words_7nt_m19); m=0 (reference); ncol1=18; shift=0; ncol=18; ssstGACAGCTGCTGcss ; Alignment reference a 60 85 61 42 15 307 3 354 4 2 14 1 4 35 21 35 77 71 c 118 97 165 39 22 12 355 0 3 349 2 1 334 20 56 223 106 102 g 102 112 97 50 317 25 0 3 352 6 2 354 9 19 249 51 90 110 t 79 65 36 228 5 15 1 2 0 2 341 3 12 285 33 50 86 76

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_7nt_m19 versus MA1485.1_rc (FERD3L_rc); m=1/19; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.609053; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; local_words_7nt_m19 versus MA0499.2_rc (MYOD1_rc); m=2/19; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.595906; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0832.1_shift2 (Tcf21)
; local_words_7nt_m19 versus MA0832.1 (Tcf21); m=3/19; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.58146; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0500.2_shift3 (MYOG)
; local_words_7nt_m19 versus MA0500.2 (MYOG); m=4/19; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.55812; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA0521.1_shift4 (Tcf12)
; local_words_7nt_m19 versus MA0521.1 (Tcf12); m=5/19; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.541974; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1641.1_shift3 (MYF5)
; local_words_7nt_m19 versus MA1641.1 (MYF5); m=6/19; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.536125; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; local_words_7nt_m19 versus MA1619.1 (Ptf1a(var.2)); m=7/19; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.530839; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0745.2_rc_shift2 (SNAI2_rc)
; local_words_7nt_m19 versus MA0745.2_rc (SNAI2_rc); m=8/19; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.514779; --rykACAGGTGcrt--- ; cor=; Ncor= a 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 c 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 g 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 t 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; local_words_7nt_m19 versus MA1467.1_rc (ATOH1(var.2)_rc); m=9/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.48936; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0816.1_shift4 (Ascl2)
; local_words_7nt_m19 versus MA0816.1 (Ascl2); m=10/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.478968; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; local_words_7nt_m19 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.473077; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; local_words_7nt_m19 versus MA1100.2_rc (ASCL1_rc); m=12/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.469477; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; local_words_7nt_m19 versus MA1635.1 (BHLHE22(var.2)); m=13/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.46103; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA0665.1_shift4 (MSC)
; local_words_7nt_m19 versus MA0665.1 (MSC); m=14/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.448789; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; local_words_7nt_m19 versus MA0691.1 (TFAP4); m=15/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.434497; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; local_words_7nt_m19 versus MA0048.2 (NHLH1); m=16/19; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.434061; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; local_words_7nt_m19 versus MA1648.1 (TCF12(var.2)); m=17/19; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.433347; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift4 (TCF3)
; local_words_7nt_m19 versus MA0522.3 (TCF3); m=18/19; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.428542; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; local_words_7nt_m19 versus MA0667.1_rc (MYF6_rc); m=19/19; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.424899; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m45_shift1 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m45_shift1 (dyads_m45dyads_m45)
; dyads_m45 (dyads_m45dyads_m45); m=0 (reference); ncol1=14; shift=1; ncol=15; -srGGGGCAGGGAgg ; Alignment reference a 0 39 66 9 9 5 8 9 188 3 4 10 182 39 56 c 0 62 24 2 4 2 3 200 4 1 2 10 25 48 46 g 0 85 82 207 205 214 210 15 22 218 214 203 10 97 90 t 0 39 53 7 7 4 4 1 11 3 5 2 8 41 33

MA1513.1_rc_shift2 (KLF15_rc)
; dyads_m45 versus MA1513.1_rc (KLF15_rc); m=1/4; ncol2=11; w=11; offset=1; strand=R; shift=2; score=0.607643; --sgGGGCGGGgs-- ; cor=; Ncor= a 0 0 2165.0 1602.0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 1744.0 0 0 c 0 0 3124.0 1934.0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 5538.0 0 0 g 0 0 5013.0 6267.0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 2903.0 0 0 t 0 0 1067.0 1566.0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 1184.0 0 0

MA0599.1_rc_shift3 (KLF5_rc)
; dyads_m45 versus MA0599.1_rc (KLF5_rc); m=2/4; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.50423; ---dGGGyGKGGc-- ; cor=; Ncor= a 0 0 0 4101.0 476.0 0.0 0.0 3378.0 0.0 565.0 1603.0 1711.0 2587.0 0 0 c 0 0 0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 7572.0 0 0 g 0 0 0 5595.0 13135.0 13611.0 13611.0 0.0 13611.0 9569.0 12008.0 11900.0 2023.0 0 0 t 0 0 0 3915.0 0.0 0.0 0.0 5051.0 0.0 3477.0 0.0 0.0 1429.0 0 0

MA1630.1_shift0 (Znf281)
; dyads_m45 versus MA1630.1 (Znf281); m=3/4; ncol2=11; w=10; offset=-1; strand=D; shift=0; score=0.503905; ggTGGGGGAgG---- ; cor=; Ncor= a 1197.0 996.0 8.0 19.0 25.0 36.0 22.0 18.0 6504.0 735.0 374.0 0 0 0 0 c 878.0 1076.0 233.0 88.0 163.0 131.0 115.0 41.0 45.0 418.0 356.0 0 0 0 0 g 3539.0 3751.0 29.0 6449.0 6356.0 6378.0 6402.0 6457.0 8.0 4312.0 5523.0 0 0 0 0 t 954.0 745.0 6298.0 12.0 24.0 23.0 29.0 52.0 11.0 1103.0 315.0 0 0 0 0

MA0597.1_rc_shift1 (THAP1_rc)
; dyads_m45 versus MA0597.1_rc (THAP1_rc); m=4/4; ncol2=9; w=9; offset=0; strand=R; shift=1; score=0.482841; -trmKGGCar----- ; cor=; Ncor= a 0 32.0 57.0 58.0 4.0 1.0 10.0 42.0 125.0 61.0 0 0 0 0 0 c 0 17.0 41.0 77.0 1.0 0.0 0.0 137.0 12.0 27.0 0 0 0 0 0 g 0 34.0 71.0 17.0 136.0 195.0 182.0 0.0 47.0 93.0 0 0 0 0 0 t 0 116.0 30.0 47.0 58.0 3.0 7.0 20.0 15.0 18.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m5_shift0 ; 28 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m5_shift0 (oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5)
; oligos_6nt_mkv3_m5 (oligos_6nt_mkv3_m5oligos_6nt_mkv3_m5); m=0 (reference); ncol1=18; shift=0; ncol=21; arytcAGTGACTCAGArv--- ; Alignment reference a 7 4 2 3 1 13 1 0 0 14 0 1 1 15 0 12 5 4 0 0 0 c 2 2 5 2 10 1 1 1 0 0 13 0 14 0 0 2 1 5 0 0 0 g 3 6 1 1 2 1 13 0 14 1 0 1 0 0 13 0 7 6 0 0 0 t 3 3 7 9 2 0 0 14 1 0 2 13 0 0 2 1 2 0 0 0 0

MA1622.1_shift3 (Smad2::Smad3)
; oligos_6nt_mkv3_m5 versus MA1622.1 (Smad2::Smad3); m=1/27; ncol2=14; w=14; offset=3; strand=D; shift=3; score=0.604774; ---rtkrTGACTCAtwm---- ; cor=; Ncor= a 0 0 0 2995.0 2508.0 2499.0 4451.0 79.0 90.0 10141.0 627.0 247.0 711.0 10056.0 683.0 2948.0 2746.0 0 0 0 0 c 0 0 0 2254.0 2515.0 1642.0 2212.0 59.0 82.0 44.0 7480.0 53.0 9443.0 85.0 2047.0 2479.0 2595.0 0 0 0 0 g 0 0 0 2615.0 2324.0 3479.0 2888.0 56.0 9768.0 58.0 1542.0 68.0 90.0 79.0 1979.0 2154.0 2524.0 0 0 0 0 t 0 0 0 2481.0 2998.0 2725.0 794.0 10151.0 405.0 102.0 696.0 9977.0 101.0 125.0 5636.0 2764.0 2480.0 0 0 0 0

MA0591.1_shift3 (Bach1::Mafk)
; oligos_6nt_mkv3_m5 versus MA0591.1 (Bach1::Mafk); m=2/27; ncol2=15; w=15; offset=3; strand=D; shift=3; score=0.591575; ---rssrTGACTCAGCAs--- ; cor=; Ncor= a 0 0 0 45.0 14.0 15.0 66.0 2.0 0.0 113.0 0.0 1.0 5.0 108.0 0.0 0.0 98.0 12.0 0 0 0 c 0 0 0 14.0 36.0 41.0 16.0 1.0 0.0 0.0 94.0 0.0 107.0 1.0 1.0 114.0 4.0 42.0 0 0 0 g 0 0 0 41.0 46.0 54.0 32.0 0.0 107.0 0.0 20.0 4.0 2.0 3.0 113.0 0.0 6.0 38.0 0 0 0 t 0 0 0 14.0 18.0 4.0 0.0 111.0 7.0 1.0 0.0 109.0 0.0 2.0 0.0 0.0 6.0 22.0 0 0 0

MA0489.1_shift1 (JUN(var.2))
; oligos_6nt_mkv3_m5 versus MA0489.1 (JUN(var.2)); m=3/27; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.586573; -rrrrrrTGAsTCAt------ ; cor=; Ncor= a 0 4852.0 3927.0 3726.0 4396.0 4146.0 5930.0 0.0 0.0 10953.0 382.0 199.0 956.0 10956.0 376.0 0 0 0 0 0 0 c 0 1250.0 1324.0 1127.0 1122.0 593.0 993.0 0.0 0.0 0.0 5704.0 0.0 10000.0 0.0 2509.0 0 0 0 0 0 0 g 0 2818.0 4110.0 4330.0 3461.0 4213.0 4033.0 0.0 10956.0 0.0 4090.0 0.0 0.0 0.0 2645.0 0 0 0 0 0 0 t 0 2036.0 1595.0 1773.0 1977.0 2004.0 0.0 10956.0 0.0 3.0 780.0 10757.0 0.0 0.0 5426.0 0 0 0 0 0 0

MA0150.2_shift2 (Nfe2l2)
; oligos_6nt_mkv3_m5 versus MA0150.2 (Nfe2l2); m=4/27; ncol2=15; w=15; offset=2; strand=D; shift=2; score=0.586004; --casmrTGACTCAGCA---- ; cor=; Ncor= a 0 0 166.0 401.0 118.0 203.0 488.0 0.0 0.0 726.0 20.0 84.0 65.0 577.0 10.0 4.0 623.0 0 0 0 0 c 0 0 338.0 78.0 239.0 247.0 28.0 0.0 0.0 0.0 533.0 20.0 549.0 3.0 11.0 699.0 26.0 0 0 0 0 g 0 0 109.0 159.0 275.0 152.0 205.0 0.0 711.0 0.0 118.0 16.0 46.0 90.0 698.0 19.0 31.0 0 0 0 0 t 0 0 113.0 88.0 94.0 124.0 5.0 726.0 15.0 0.0 55.0 606.0 66.0 56.0 7.0 4.0 46.0 0 0 0 0

MA0089.2_shift3 (NFE2L1)
; oligos_6nt_mkv3_m5 versus MA0089.2 (NFE2L1); m=5/27; ncol2=16; w=15; offset=3; strand=D; shift=3; score=0.569064; ---avmATGACTCAGCAaw-- ; cor=; Ncor= a 0 0 0 1244.0 878.0 992.0 2582.0 12.0 17.0 3336.0 51.0 218.0 185.0 3171.0 57.0 16.0 2857.0 1362.0 1145.0 0 0 c 0 0 0 703.0 946.0 853.0 57.0 5.0 7.0 4.0 2864.0 12.0 3049.0 9.0 18.0 3281.0 64.0 517.0 224.0 0 0 g 0 0 0 671.0 1050.0 742.0 706.0 2.0 3308.0 10.0 358.0 35.0 25.0 78.0 3018.0 33.0 142.0 694.0 305.0 0 0 t 0 0 0 738.0 482.0 769.0 11.0 3337.0 24.0 6.0 83.0 3091.0 97.0 98.0 263.0 26.0 293.0 783.0 1682.0 0 0

MA1633.1_shift5 (BACH1)
; oligos_6nt_mkv3_m5 versus MA1633.1 (BACH1); m=6/27; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.568176; -----saTGACTCAGCaw--- ; cor=; Ncor= a 0 0 0 0 0 3257.0 6929.0 105.0 97.0 15046.0 443.0 650.0 576.0 14778.0 339.0 769.0 8799.0 4492.0 0 0 0 c 0 0 0 0 0 3946.0 3833.0 267.0 149.0 230.0 12597.0 220.0 14563.0 194.0 623.0 13382.0 2167.0 3574.0 0 0 0 g 0 0 0 0 0 4835.0 3848.0 149.0 14831.0 167.0 2083.0 266.0 178.0 310.0 13050.0 858.0 1971.0 3553.0 0 0 0 t 0 0 0 0 0 3519.0 947.0 15036.0 480.0 114.0 434.0 14421.0 240.0 275.0 1545.0 548.0 2620.0 3938.0 0 0 0

MA1141.1_rc_shift4 (FOS::JUND_rc)
; oligos_6nt_mkv3_m5 versus MA1141.1_rc (FOS::JUND_rc); m=7/27; ncol2=13; w=13; offset=4; strand=R; shift=4; score=0.54808; ----bkrTGACTCAymm---- ; cor=; Ncor= a 0 0 0 0 180.0 185.0 612.0 0.0 0.0 999.0 19.0 15.0 129.0 999.0 38.0 263.0 258.0 0 0 0 0 c 0 0 0 0 292.0 195.0 77.0 0.0 0.0 0.0 867.0 0.0 871.0 0.0 266.0 389.0 315.0 0 0 0 0 g 0 0 0 0 264.0 370.0 290.0 0.0 970.0 0.0 40.0 91.0 0.0 1.0 104.0 167.0 244.0 0 0 0 0 t 0 0 0 0 264.0 250.0 21.0 999.0 29.0 0.0 75.0 894.0 0.0 0.0 593.0 182.0 183.0 0 0 0 0

MA1128.1_shift4 (FOSL1::JUN)
; oligos_6nt_mkv3_m5 versus MA1128.1 (FOSL1::JUN); m=8/27; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.546291; ----kkrTGACTCAtmm---- ; cor=; Ncor= a 0 0 0 0 208.0 172.0 602.0 1.0 3.0 994.0 26.0 33.0 159.0 984.0 57.0 296.0 277.0 0 0 0 0 c 0 0 0 0 246.0 159.0 89.0 2.0 2.0 2.0 826.0 2.0 835.0 4.0 245.0 308.0 289.0 0 0 0 0 g 0 0 0 0 253.0 380.0 283.0 1.0 957.0 2.0 51.0 140.0 2.0 9.0 119.0 173.0 237.0 0 0 0 0 t 0 0 0 0 293.0 289.0 26.0 996.0 38.0 3.0 97.0 826.0 4.0 4.0 579.0 223.0 196.0 0 0 0 0

MA1137.1_shift4 (FOSL1::JUNB)
; oligos_6nt_mkv3_m5 versus MA1137.1 (FOSL1::JUNB); m=9/27; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.545555; ----ykrTGAcTMAtmc---- ; cor=; Ncor= a 0 0 0 0 237.0 216.0 566.0 23.0 36.0 917.0 63.0 59.0 271.0 904.0 53.0 300.0 247.0 0 0 0 0 c 0 0 0 0 269.0 146.0 100.0 16.0 21.0 20.0 626.0 23.0 683.0 21.0 225.0 298.0 300.0 0 0 0 0 g 0 0 0 0 195.0 376.0 287.0 16.0 880.0 21.0 198.0 115.0 9.0 38.0 170.0 204.0 223.0 0 0 0 0 t 0 0 0 0 300.0 263.0 47.0 945.0 63.0 42.0 113.0 803.0 37.0 37.0 552.0 198.0 230.0 0 0 0 0

MA0477.2_shift4 (FOSL1)
; oligos_6nt_mkv3_m5 versus MA0477.2 (FOSL1); m=10/27; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.541379; ----draTGACTCAthy---- ; cor=; Ncor= a 0 0 0 0 14979.0 15921.0 35056.0 260.0 515.0 56806.0 2557.0 1060.0 3133.0 56408.0 2716.0 14671.0 13956.0 0 0 0 0 c 0 0 0 0 12491.0 11018.0 6703.0 460.0 301.0 287.0 43918.0 163.0 53711.0 344.0 10399.0 15640.0 17637.0 0 0 0 0 g 0 0 0 0 14848.0 16855.0 13127.0 183.0 54619.0 286.0 8615.0 598.0 278.0 566.0 6533.0 12314.0 11065.0 0 0 0 0 t 0 0 0 0 15363.0 13887.0 2795.0 56778.0 2246.0 302.0 2591.0 55860.0 559.0 363.0 38033.0 15056.0 15023.0 0 0 0 0

MA0496.3_shift4 (MAFK)
; oligos_6nt_mkv3_m5 versus MA0496.3 (MAFK); m=11/27; ncol2=15; w=14; offset=4; strand=D; shift=4; score=0.540143; ----tgmTGACTCAGCmww-- ; cor=; Ncor= a 0 0 0 0 11946.0 9602.0 14089.0 1616.0 1108.0 47484.0 2492.0 2722.0 1818.0 47675.0 1439.0 2664.0 24802.0 15933.0 14818.0 0 0 c 0 0 0 0 10789.0 10655.0 27000.0 1568.0 1366.0 1670.0 39125.0 1133.0 47872.0 882.0 1921.0 43458.0 14138.0 10737.0 9756.0 0 0 g 0 0 0 0 9969.0 21904.0 6706.0 1058.0 46695.0 1306.0 7573.0 1081.0 957.0 1267.0 44013.0 3327.0 4590.0 10512.0 8541.0 0 0 t 0 0 0 0 19030.0 9573.0 3939.0 47492.0 2565.0 1274.0 2544.0 46798.0 1087.0 1910.0 4361.0 2285.0 8204.0 14552.0 18619.0 0 0

MA0490.2_shift4 (JUNB)
; oligos_6nt_mkv3_m5 versus MA0490.2 (JUNB); m=12/27; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.523973; ----wdATGACTCATwh---- ; cor=; Ncor= a 0 0 0 0 22772.0 23561.0 56607.0 538.0 770.0 78101.0 4755.0 1999.0 5243.0 77675.0 3722.0 21544.0 21137.0 0 0 0 0 c 0 0 0 0 16583.0 15807.0 7817.0 654.0 550.0 523.0 59784.0 289.0 73199.0 588.0 8876.0 19230.0 20653.0 0 0 0 0 g 0 0 0 0 18150.0 20403.0 11566.0 322.0 74757.0 550.0 10519.0 913.0 617.0 900.0 7508.0 16491.0 15068.0 0 0 0 0 t 0 0 0 0 22351.0 20085.0 3866.0 78342.0 3779.0 682.0 4798.0 76655.0 797.0 693.0 59750.0 22591.0 22998.0 0 0 0 0

MA0491.2_shift4 (JUND)
; oligos_6nt_mkv3_m5 versus MA0491.2 (JUND); m=13/27; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.52286; ----wraTGACTCAThh---- ; cor=; Ncor= a 0 0 0 0 28467.0 29234.0 70166.0 644.0 1365.0 103797.0 4634.0 2053.0 4915.0 103420.0 2796.0 27969.0 28212.0 0 0 0 0 c 0 0 0 0 21965.0 19712.0 10173.0 757.0 873.0 650.0 76028.0 496.0 98628.0 751.0 12025.0 28250.0 29793.0 0 0 0 0 g 0 0 0 0 25006.0 31347.0 20586.0 443.0 99787.0 573.0 20633.0 1147.0 953.0 965.0 7908.0 22249.0 19236.0 0 0 0 0 t 0 0 0 0 30507.0 25652.0 5020.0 104101.0 3920.0 925.0 4650.0 102249.0 1449.0 809.0 83216.0 27477.0 28704.0 0 0 0 0

MA1130.1_rc_shift5 (FOSL2::JUN_rc)
; oligos_6nt_mkv3_m5 versus MA1130.1_rc (FOSL2::JUN_rc); m=14/27; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.51587; -----krTGACTCAymm---- ; cor=; Ncor= a 0 0 0 0 0 209.0 589.0 1.0 1.0 998.0 58.0 29.0 158.0 998.0 55.0 269.0 268.0 0 0 0 0 c 0 0 0 0 0 180.0 93.0 1.0 1.0 1.0 698.0 1.0 840.0 1.0 282.0 338.0 295.0 0 0 0 0 g 0 0 0 0 0 341.0 299.0 0.0 979.0 1.0 141.0 123.0 1.0 1.0 121.0 179.0 248.0 0 0 0 0 t 0 0 0 0 0 269.0 19.0 998.0 20.0 1.0 103.0 847.0 1.0 1.0 542.0 214.0 189.0 0 0 0 0

MA0478.1_shift4 (FOSL2)
; oligos_6nt_mkv3_m5 versus MA0478.1 (FOSL2); m=15/27; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.509074; ----krrTGAsTCAb------ ; cor=; Ncor= a 0 0 0 0 833.0 1525.0 2861.0 0.0 0.0 5075.0 0.0 0.0 205.0 5318.0 0.0 0 0 0 0 0 0 c 0 0 0 0 994.0 592.0 55.0 0.0 0.0 51.0 3286.0 0.0 5113.0 0.0 1399.0 0 0 0 0 0 0 g 0 0 0 0 2086.0 2707.0 2328.0 0.0 5318.0 192.0 1838.0 0.0 0.0 0.0 1933.0 0 0 0 0 0 0 t 0 0 0 0 1405.0 494.0 74.0 5318.0 0.0 0.0 194.0 5318.0 0.0 0.0 1986.0 0 0 0 0 0 0

MA1634.1_shift5 (BATF)
; oligos_6nt_mkv3_m5 versus MA1634.1 (BATF); m=16/27; ncol2=11; w=11; offset=5; strand=D; shift=5; score=0.497014; -----waTGACTCAth----- ; cor=; Ncor= a 0 0 0 0 0 13555.0 22575.0 483.0 1139.0 45946.0 2051.0 1130.0 4742.0 45316.0 8146.0 16139.0 0 0 0 0 0 c 0 0 0 0 0 5742.0 8931.0 355.0 570.0 250.0 37333.0 306.0 40279.0 431.0 7566.0 12048.0 0 0 0 0 0 g 0 0 0 0 0 11492.0 8627.0 283.0 40617.0 341.0 5573.0 836.0 711.0 507.0 9681.0 5919.0 0 0 0 0 0 t 0 0 0 0 0 16219.0 6875.0 45887.0 4682.0 471.0 2051.0 44736.0 1276.0 754.0 21615.0 12902.0 0 0 0 0 0

MA0462.2_shift5 (BATF::JUN)
; oligos_6nt_mkv3_m5 versus MA0462.2 (BATF::JUN); m=17/27; ncol2=11; w=11; offset=5; strand=D; shift=5; score=0.495766; -----waTGACTCAth----- ; cor=; Ncor= a 0 0 0 0 0 10765.0 18789.0 367.0 834.0 37280.0 1399.0 755.0 3955.0 36854.0 6299.0 13407.0 0 0 0 0 0 c 0 0 0 0 0 4762.0 7260.0 275.0 400.0 204.0 31168.0 241.0 32770.0 318.0 6105.0 9668.0 0 0 0 0 0 g 0 0 0 0 0 9317.0 6729.0 182.0 33135.0 350.0 4188.0 539.0 522.0 424.0 7745.0 4923.0 0 0 0 0 0 t 0 0 0 0 0 13310.0 5376.0 37330.0 3785.0 320.0 1399.0 36619.0 907.0 558.0 18005.0 10156.0 0 0 0 0 0

MA1134.1_rc_shift4 (FOS::JUNB_rc)
; oligos_6nt_mkv3_m5 versus MA1134.1_rc (FOS::JUNB_rc); m=18/27; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.495642; ----bkrTGAsTCAym----- ; cor=; Ncor= a 0 0 0 0 156.0 184.0 658.0 1.0 1.0 996.0 25.0 4.0 131.0 998.0 36.0 286.0 0 0 0 0 0 c 0 0 0 0 256.0 178.0 51.0 1.0 1.0 3.0 618.0 1.0 868.0 1.0 267.0 372.0 0 0 0 0 0 g 0 0 0 0 304.0 363.0 284.0 1.0 971.0 1.0 309.0 30.0 1.0 1.0 105.0 168.0 0 0 0 0 0 t 0 0 0 0 283.0 275.0 7.0 998.0 27.0 1.0 48.0 965.0 1.0 1.0 593.0 174.0 0 0 0 0 0

MA0835.2_shift5 (BATF3)
; oligos_6nt_mkv3_m5 versus MA0835.2 (BATF3); m=19/27; ncol2=11; w=11; offset=5; strand=D; shift=5; score=0.494342; -----waTGACTCAtw----- ; cor=; Ncor= a 0 0 0 0 0 3609.0 6137.0 132.0 245.0 11670.0 408.0 267.0 1248.0 11529.0 2334.0 4521.0 0 0 0 0 0 c 0 0 0 0 0 1245.0 2106.0 59.0 62.0 92.0 10589.0 79.0 10347.0 84.0 1664.0 2733.0 0 0 0 0 0 g 0 0 0 0 0 2608.0 1831.0 37.0 10420.0 87.0 560.0 117.0 88.0 117.0 2249.0 1255.0 0 0 0 0 0 t 0 0 0 0 0 4503.0 1891.0 11737.0 1238.0 116.0 408.0 11502.0 282.0 235.0 5718.0 3456.0 0 0 0 0 0

MA0476.1_rc_shift5 (FOS_rc)
; oligos_6nt_mkv3_m5 versus MA0476.1_rc (FOS_rc); m=20/27; ncol2=11; w=11; offset=5; strand=R; shift=5; score=0.476279; -----vATGAsTCAbh----- ; cor=; Ncor= a 0 0 0 0 0 9257.0 21777.0 0.0 0.0 29396.0 3113.0 0.0 2288.0 29396.0 903.0 11119.0 0 0 0 0 0 c 0 0 0 0 0 7897.0 1538.0 0.0 0.0 0.0 11206.0 0.0 27108.0 0.0 10841.0 9686.0 0 0 0 0 0 g 0 0 0 0 0 8236.0 5823.0 0.0 29396.0 0.0 14079.0 0.0 0.0 0.0 10177.0 712.0 0 0 0 0 0 t 0 0 0 0 0 4006.0 258.0 29396.0 0.0 0.0 998.0 29396.0 0.0 0.0 7475.0 7879.0 0 0 0 0 0

MA0501.1_shift6 (MAF::NFE2)
; oligos_6nt_mkv3_m5 versus MA0501.1 (MAF::NFE2); m=21/27; ncol2=15; w=12; offset=6; strand=D; shift=6; score=0.448238; ------rTGACTCAGCArwwy ; cor=; Ncor= a 0 0 0 0 0 0 726.0 0.0 0.0 1090.0 16.0 110.0 80.0 978.0 8.0 0.0 931.0 383.0 361.0 292.0 211.0 c 0 0 0 0 0 0 26.0 0.0 0.0 0.0 871.0 1.0 937.0 0.0 4.0 1063.0 17.0 203.0 100.0 102.0 283.0 g 0 0 0 0 0 0 334.0 0.0 1082.0 0.0 166.0 12.0 22.0 51.0 1041.0 22.0 73.0 283.0 130.0 91.0 106.0 t 0 0 0 0 0 0 4.0 1090.0 8.0 0.0 37.0 967.0 51.0 61.0 37.0 5.0 69.0 221.0 499.0 605.0 490.0

MA1142.1_shift5 (FOSL1::JUND)
; oligos_6nt_mkv3_m5 versus MA1142.1 (FOSL1::JUND); m=22/27; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.444409; -----rrTGActmAt------ ; cor=; Ncor= a 0 0 0 0 0 265.0 551.0 30.0 22.0 864.0 49.0 98.0 270.0 912.0 174.0 0 0 0 0 0 0 c 0 0 0 0 0 221.0 127.0 23.0 61.0 12.0 581.0 45.0 641.0 40.0 212.0 0 0 0 0 0 0 g 0 0 0 0 0 279.0 282.0 34.0 777.0 82.0 191.0 187.0 25.0 17.0 144.0 0 0 0 0 0 0 t 0 0 0 0 0 235.0 40.0 913.0 140.0 41.0 180.0 669.0 64.0 31.0 470.0 0 0 0 0 0 0

MA0099.3_rc_shift5 (FOS::JUN_rc)
; oligos_6nt_mkv3_m5 versus MA0099.3_rc (FOS::JUN_rc); m=23/27; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.439477; -----krTGACTCAy------ ; cor=; Ncor= a 0 0 0 0 0 162.0 568.0 4.0 4.0 991.0 54.0 45.0 168.0 990.0 40.0 0 0 0 0 0 0 c 0 0 0 0 0 164.0 95.0 2.0 3.0 2.0 688.0 4.0 824.0 2.0 257.0 0 0 0 0 0 0 g 0 0 0 0 0 397.0 313.0 2.0 963.0 2.0 180.0 131.0 1.0 5.0 111.0 0 0 0 0 0 0 t 0 0 0 0 0 277.0 24.0 992.0 30.0 5.0 78.0 820.0 7.0 3.0 592.0 0 0 0 0 0 0

MA1138.1_shift5 (FOSL2::JUNB)
; oligos_6nt_mkv3_m5 versus MA1138.1 (FOSL2::JUNB); m=24/27; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.430706; -----krTGAsTCAy------ ; cor=; Ncor= a 0 0 0 0 0 151.0 621.0 0.0 0.0 999.0 54.0 1.0 168.0 999.0 35.0 0 0 0 0 0 0 c 0 0 0 0 0 164.0 53.0 0.0 0.0 0.0 568.0 0.0 831.0 0.0 251.0 0 0 0 0 0 0 g 0 0 0 0 0 407.0 314.0 0.0 985.0 0.0 292.0 26.0 0.0 0.0 112.0 0 0 0 0 0 0 t 0 0 0 0 0 277.0 13.0 999.0 14.0 0.0 85.0 973.0 0.0 0.0 602.0 0 0 0 0 0 0

MA1135.1_shift5 (FOSB::JUNB)
; oligos_6nt_mkv3_m5 versus MA1135.1 (FOSB::JUNB); m=25/27; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.430554; -----krTGAsTCAy------ ; cor=; Ncor= a 0 0 0 0 0 119.0 598.0 1.0 1.0 997.0 34.0 2.0 191.0 998.0 37.0 0 0 0 0 0 0 c 0 0 0 0 0 182.0 61.0 0.0 0.0 1.0 596.0 1.0 808.0 0.0 259.0 0 0 0 0 0 0 g 0 0 0 0 0 429.0 321.0 1.0 980.0 1.0 309.0 39.0 1.0 1.0 126.0 0 0 0 0 0 0 t 0 0 0 0 0 270.0 20.0 998.0 19.0 1.0 61.0 958.0 1.0 1.0 578.0 0 0 0 0 0 0

MA1144.1_shift5 (FOSL2::JUND)
; oligos_6nt_mkv3_m5 versus MA1144.1 (FOSL2::JUND); m=26/27; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.428896; -----krTGAsTCAy------ ; cor=; Ncor= a 0 0 0 0 0 137.0 634.0 0.0 0.0 998.0 46.0 6.0 140.0 999.0 38.0 0 0 0 0 0 0 c 0 0 0 0 0 143.0 60.0 0.0 0.0 1.0 604.0 0.0 860.0 0.0 266.0 0 0 0 0 0 0 g 0 0 0 0 0 446.0 291.0 0.0 990.0 0.0 292.0 60.0 0.0 0.0 113.0 0 0 0 0 0 0 t 0 0 0 0 0 275.0 14.0 999.0 10.0 0.0 58.0 934.0 0.0 0.0 583.0 0 0 0 0 0 0

MA1132.1_shift5 (JUN::JUNB)
; oligos_6nt_mkv3_m5 versus MA1132.1 (JUN::JUNB); m=27/27; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.416167; -----kaTGACkCAt------ ; cor=; Ncor= a 0 0 0 0 0 203.0 627.0 11.0 10.0 944.0 27.0 58.0 161.0 931.0 188.0 0 0 0 0 0 0 c 0 0 0 0 0 128.0 134.0 10.0 21.0 10.0 826.0 24.0 707.0 24.0 248.0 0 0 0 0 0 0 g 0 0 0 0 0 408.0 189.0 34.0 921.0 28.0 115.0 353.0 10.0 18.0 64.0 0 0 0 0 0 0 t 0 0 0 0 0 261.0 50.0 946.0 47.0 18.0 33.0 565.0 122.0 27.0 500.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m43_shift3 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m43_shift3 (dyads_m43dyads_m43)
; dyads_m43 (dyads_m43dyads_m43); m=0 (reference); ncol1=11; shift=3; ncol=14; ---kgCCCAGGChg ; Alignment reference a 0 0 0 85 64 0 0 0 393 0 0 0 110 81 c 0 0 0 96 85 403 400 399 8 3 0 403 136 100 g 0 0 0 118 169 0 3 4 2 400 403 0 50 140 t 0 0 0 104 85 0 0 0 0 0 0 0 107 82

MA0812.1_shift2 (TFAP2B(var.2))
; dyads_m43 versus MA0812.1 (TFAP2B(var.2)); m=1/4; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.599514; --mGCCysAGGCd- ; cor=; Ncor= a 0 0 1784.0 36.0 0.0 0.0 16.0 576.0 3480.0 235.0 6.0 47.0 1822.0 0 c 0 0 1412.0 609.0 4549.0 4549.0 1204.0 2126.0 608.0 4.0 10.0 4250.0 371.0 0 g 0 0 232.0 3940.0 4.0 1.0 612.0 1498.0 446.0 4549.0 4549.0 299.0 1149.0 0 t 0 0 1121.0 30.0 0.0 158.0 2716.0 348.0 14.0 2.0 1.0 25.0 1207.0 0

MA0472.2_shift2 (EGR2)
; dyads_m43 versus MA0472.2 (EGR2); m=2/4; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.593344; --mCGCCCACGCa- ; cor=; Ncor= a 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 c 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 g 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 t 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0

MA0814.2_rc_shift0 (TFAP2C(var.2)_rc)
; dyads_m43 versus MA0814.2_rc (TFAP2C(var.2)_rc); m=3/4; ncol2=14; w=11; offset=-3; strand=R; shift=0; score=0.557149; sbcGCCTCAGGccv ; cor=; Ncor= a 14898.0 10705.0 10707.0 3881.0 614.0 464.0 1084.0 1238.0 49003.0 660.0 702.0 4622.0 14497.0 16609.0 c 17367.0 18680.0 27373.0 9867.0 57916.0 57995.0 3944.0 55222.0 4910.0 2060.0 2273.0 37729.0 20129.0 17038.0 g 16468.0 15252.0 12553.0 42758.0 1575.0 1486.0 4733.0 3036.0 5539.0 57617.0 57108.0 14686.0 12565.0 15858.0 t 12086.0 16182.0 10186.0 4313.0 714.0 874.0 51058.0 1323.0 1367.0 482.0 736.0 3782.0 13628.0 11314.0

MA0003.4_shift0 (TFAP2A)
; dyads_m43 versus MA0003.4 (TFAP2A); m=4/4; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.556899; vytgCCTCAGGsma ; cor=; Ncor= a 4335.0 2763.0 2842.0 1088.0 280.0 116.0 278.0 530.0 13567.0 186.0 154.0 1221.0 4220.0 5204.0 c 4092.0 4620.0 2634.0 3615.0 15321.0 15351.0 1173.0 13536.0 739.0 217.0 234.0 9445.0 4783.0 3915.0 g 4072.0 3374.0 3791.0 9961.0 187.0 212.0 750.0 1406.0 1229.0 15432.0 15422.0 4098.0 3051.0 3841.0 t 3469.0 5211.0 6701.0 1304.0 180.0 289.0 13767.0 496.0 433.0 133.0 158.0 1204.0 3914.0 3008.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m32_shift1 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m32_shift1 (oligos_6nt_mkv3_m32oligos_6nt_mkv3_m32)
; oligos_6nt_mkv3_m32 (oligos_6nt_mkv3_m32oligos_6nt_mkv3_m32); m=0 (reference); ncol1=10; shift=1; ncol=12; -cgCGGCCGcg- ; Alignment reference a 0 35 22 0 0 1 2 0 0 20 37 0 c 0 119 63 254 10 6 245 244 0 149 63 0 g 0 63 149 0 244 245 6 10 254 63 119 0 t 0 37 20 0 0 2 1 0 0 22 35 0

MA0131.2_shift0 (HINFP)
; oligos_6nt_mkv3_m32 versus MA0131.2 (HINFP); m=1/1; ncol2=12; w=10; offset=-1; strand=D; shift=0; score=0.599456; carCGTCCGCgk ; cor=; Ncor= a 23.0 285.0 276.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 85.0 77.0 c 340.0 131.0 45.0 388.0 14.0 0.0 404.0 413.0 31.0 395.0 55.0 84.0 g 106.0 113.0 217.0 97.0 484.0 0.0 13.0 0.0 472.0 15.0 188.0 154.0 t 100.0 53.0 17.0 7.0 10.0 470.0 0.0 3.0 21.0 12.0 97.0 107.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m37_shift1 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m37_shift1 (oligos_6nt_mkv3_m37oligos_6nt_mkv3_m37)
; oligos_6nt_mkv3_m37 (oligos_6nt_mkv3_m37oligos_6nt_mkv3_m37); m=0 (reference); ncol1=11; shift=1; ncol=13; -ssCGmGCGCss- ; Alignment reference a 0 50 26 2 2 169 9 1 0 27 34 37 0 c 0 139 108 310 0 86 13 315 5 250 102 105 0 g 0 97 164 9 319 50 293 4 315 28 159 142 0 t 0 35 23 0 0 16 6 1 1 16 26 37 0

MA0506.1_shift0 (NRF1)
; oligos_6nt_mkv3_m37 versus MA0506.1 (NRF1); m=1/3; ncol2=11; w=10; offset=-1; strand=D; shift=0; score=0.598574; GCGCmTGCGCr-- ; cor=; Ncor= a 602.0 623.0 196.0 0.0 1514.0 0.0 0.0 0.0 0.0 74.0 2245.0 0 0 c 375.0 4001.0 189.0 4016.0 1862.0 403.0 0.0 4338.0 349.0 4550.0 804.0 0 0 g 3647.0 0.0 4239.0 468.0 935.0 528.0 4624.0 0.0 4275.0 0.0 1575.0 0 0 t 0.0 0.0 0.0 140.0 313.0 3693.0 0.0 286.0 0.0 0.0 0.0 0 0

MA1650.1_rc_shift2 (ZBTB14_rc)
; oligos_6nt_mkv3_m37 versus MA1650.1_rc (ZBTB14_rc); m=2/3; ncol2=12; w=10; offset=1; strand=R; shift=2; score=0.560882; --ssGTGCGCGGs ; cor=; Ncor= a 0 0 606.0 508.0 123.0 0.0 52.0 67.0 82.0 62.0 59.0 73.0 519.0 c 0 0 1239.0 1451.0 651.0 10.0 261.0 4043.0 319.0 4098.0 155.0 614.0 1555.0 g 0 0 2260.0 1618.0 3674.0 37.0 4178.0 305.0 4078.0 294.0 4292.0 3525.0 1972.0 t 0 0 442.0 970.0 99.0 4500.0 56.0 132.0 68.0 93.0 41.0 335.0 501.0

MA0632.2_rc_shift4 (TCFL5_rc)
; oligos_6nt_mkv3_m37 versus MA0632.2_rc (TCFL5_rc); m=3/3; ncol2=10; w=8; offset=3; strand=R; shift=4; score=0.486811; ----gkGCGCGyG ; cor=; Ncor= a 0 0 0 0 8670.0 25921.0 635.0 0.0 15451.0 0.0 1643.0 9359.0 0.0 c 0 0 0 0 5747.0 19096.0 4594.0 72543.0 0.0 72543.0 0.0 29710.0 0.0 g 0 0 0 0 47538.0 44394.0 72543.0 657.0 57092.0 0.0 72543.0 0.0 72543.0 t 0 0 0 0 10588.0 72543.0 1593.0 3520.0 1765.0 1566.0 0.0 72543.0 0.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m49_shift3 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m49_shift3 (oligos_6nt_mkv3_m49oligos_6nt_mkv3_m49)
; oligos_6nt_mkv3_m49 (oligos_6nt_mkv3_m49oligos_6nt_mkv3_m49); m=0 (reference); ncol1=11; shift=3; ncol=14; ---kgCCCAGGChs ; Alignment reference a 0 0 0 90 70 10 0 0 422 0 0 0 111 87 c 0 0 0 101 94 401 428 427 7 2 0 431 144 110 g 0 0 0 130 179 10 3 4 2 429 431 0 68 151 t 0 0 0 110 88 10 0 0 0 0 0 0 108 83

MA0812.1_shift2 (TFAP2B(var.2))
; oligos_6nt_mkv3_m49 versus MA0812.1 (TFAP2B(var.2)); m=1/4; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.598551; --mGCCysAGGCd- ; cor=; Ncor= a 0 0 1784.0 36.0 0.0 0.0 16.0 576.0 3480.0 235.0 6.0 47.0 1822.0 0 c 0 0 1412.0 609.0 4549.0 4549.0 1204.0 2126.0 608.0 4.0 10.0 4250.0 371.0 0 g 0 0 232.0 3940.0 4.0 1.0 612.0 1498.0 446.0 4549.0 4549.0 299.0 1149.0 0 t 0 0 1121.0 30.0 0.0 158.0 2716.0 348.0 14.0 2.0 1.0 25.0 1207.0 0

MA0472.2_shift2 (EGR2)
; oligos_6nt_mkv3_m49 versus MA0472.2 (EGR2); m=2/4; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.588816; --mCGCCCACGCa- ; cor=; Ncor= a 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 c 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 g 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 t 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0

MA0814.2_rc_shift0 (TFAP2C(var.2)_rc)
; oligos_6nt_mkv3_m49 versus MA0814.2_rc (TFAP2C(var.2)_rc); m=3/4; ncol2=14; w=11; offset=-3; strand=R; shift=0; score=0.556183; sbcGCCTCAGGccv ; cor=; Ncor= a 14898.0 10705.0 10707.0 3881.0 614.0 464.0 1084.0 1238.0 49003.0 660.0 702.0 4622.0 14497.0 16609.0 c 17367.0 18680.0 27373.0 9867.0 57916.0 57995.0 3944.0 55222.0 4910.0 2060.0 2273.0 37729.0 20129.0 17038.0 g 16468.0 15252.0 12553.0 42758.0 1575.0 1486.0 4733.0 3036.0 5539.0 57617.0 57108.0 14686.0 12565.0 15858.0 t 12086.0 16182.0 10186.0 4313.0 714.0 874.0 51058.0 1323.0 1367.0 482.0 736.0 3782.0 13628.0 11314.0

MA0003.4_shift0 (TFAP2A)
; oligos_6nt_mkv3_m49 versus MA0003.4 (TFAP2A); m=4/4; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.555515; vytgCCTCAGGsma ; cor=; Ncor= a 4335.0 2763.0 2842.0 1088.0 280.0 116.0 278.0 530.0 13567.0 186.0 154.0 1221.0 4220.0 5204.0 c 4092.0 4620.0 2634.0 3615.0 15321.0 15351.0 1173.0 13536.0 739.0 217.0 234.0 9445.0 4783.0 3915.0 g 4072.0 3374.0 3791.0 9961.0 187.0 212.0 750.0 1406.0 1229.0 15432.0 15422.0 4098.0 3051.0 3841.0 t 3469.0 5211.0 6701.0 1304.0 180.0 289.0 13767.0 496.0 433.0 133.0 158.0 1204.0 3914.0 3008.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m12_shift5 ; 14 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m12_shift5 (oligos_6nt_mkv3_m12oligos_6nt_mkv3_m12)
; oligos_6nt_mkv3_m12 (oligos_6nt_mkv3_m12oligos_6nt_mkv3_m12); m=0 (reference); ncol1=13; shift=5; ncol=20; -----ccCCACCCCACcc-- ; Alignment reference a 0 0 0 0 0 52 33 11 5 259 4 6 3 9 219 14 45 49 0 0 c 0 0 0 0 0 133 146 270 273 5 269 274 279 265 38 226 155 156 0 0 g 0 0 0 0 0 51 61 2 1 16 8 4 4 5 10 25 47 38 0 0 t 0 0 0 0 0 50 46 3 7 6 5 2 0 7 19 21 39 43 0 0

MA0753.2_shift3 (ZNF740)
; oligos_6nt_mkv3_m12 versus MA0753.2 (ZNF740); m=1/13; ncol2=13; w=11; offset=-2; strand=D; shift=3; score=0.595282; ---cyrCCCCCCCCAc---- ; cor=; Ncor= a 0 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 0 0 0 c 0 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 0 0 0 g 0 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 0 0 0 t 0 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0 0 0 0

MA0039.4_shift3 (KLF4)
; oligos_6nt_mkv3_m12 versus MA0039.4 (KLF4); m=2/13; ncol2=12; w=10; offset=-2; strand=D; shift=3; score=0.568133; ---ssCCCCACCChs----- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0 0 0 0

MA0595.1_shift6 (SREBF1)
; oligos_6nt_mkv3_m12 versus MA0595.1 (SREBF1); m=3/13; ncol2=10; w=10; offset=1; strand=D; shift=6; score=0.560592; ------rTCACcCCAy---- ; cor=; Ncor= a 0 0 0 0 0 0 28.0 0.0 0.0 58.0 0.0 6.0 0.0 2.0 58.0 0.0 0 0 0 0 c 0 0 0 0 0 0 14.0 0.0 58.0 0.0 51.0 38.0 44.0 45.0 0.0 26.0 0 0 0 0 g 0 0 0 0 0 0 16.0 0.0 0.0 0.0 7.0 13.0 0.0 11.0 0.0 7.0 0 0 0 0 t 0 0 0 0 0 0 0.0 58.0 0.0 0.0 0.0 1.0 14.0 0.0 0.0 25.0 0 0 0 0

MA1578.1_shift8 (VEZF1)
; oligos_6nt_mkv3_m12 versus MA1578.1 (VEZF1); m=4/13; ncol2=10; w=10; offset=3; strand=D; shift=8; score=0.55573; --------CCCCCCmytw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 0 c 0 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 0 g 0 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 0 t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0 0

MA0599.1_shift4 (KLF5)
; oligos_6nt_mkv3_m12 versus MA0599.1 (KLF5); m=5/13; ncol2=10; w=9; offset=-1; strand=D; shift=4; score=0.544413; ----gCCMCrCCCh------ ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0 0 0

MA1513.1_shift4 (KLF15)
; oligos_6nt_mkv3_m12 versus MA1513.1 (KLF15); m=6/13; ncol2=11; w=10; offset=-1; strand=D; shift=4; score=0.518164; ----scCCCGCCCcs----- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0 0 0

MA1653.1_shift8 (ZNF148)
; oligos_6nt_mkv3_m12 versus MA1653.1 (ZNF148); m=7/13; ncol2=12; w=10; offset=3; strand=D; shift=8; score=0.472266; --------ysCCCCTCCCcc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 c 0 0 0 0 0 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 g 0 0 0 0 0 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 t 0 0 0 0 0 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0

MA0073.1_shift0 (RREB1)
; oligos_6nt_mkv3_m12 versus MA0073.1 (RREB1); m=8/13; ncol2=20; w=13; offset=-5; strand=D; shift=0; score=0.456994; MCMCmAMmCAmCMmCmmmsm ; cor=; Ncor= a 3.0 1.0 3.0 0.0 7.0 9.0 8.0 4.0 0.0 11.0 4.0 1.0 3.0 4.0 2.0 4.0 4.0 4.0 1.0 4.0 c 8.0 10.0 8.0 11.0 4.0 2.0 3.0 6.0 11.0 0.0 7.0 10.0 8.0 6.0 9.0 5.0 5.0 6.0 7.0 4.0 g 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0 3.0 2.0 t 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.0 1.0 0.0 1.0

MA1515.1_shift3 (KLF2)
; oligos_6nt_mkv3_m12 versus MA1515.1 (KLF2); m=9/13; ncol2=11; w=9; offset=-2; strand=D; shift=3; score=0.440758; ---srCCmCrCCCw------ ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0 0 0 0

MA0493.1_shift3 (Klf1)
; oligos_6nt_mkv3_m12 versus MA0493.1 (Klf1); m=10/13; ncol2=11; w=9; offset=-2; strand=D; shift=3; score=0.438167; ---rrCCACACCCw------ ; cor=; Ncor= a 0 0 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 0 0 0 c 0 0 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 0 0 0 g 0 0 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 t 0 0 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0 0 0 0

MA1522.1_shift3 (MAZ)
; oligos_6nt_mkv3_m12 versus MA1522.1 (MAZ); m=11/13; ncol2=11; w=9; offset=-2; strand=D; shift=3; score=0.425004; ---ssCCCCTCCcc------ ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0 0 0 0

MA0130.1_shift5 (ZNF354C)
; oligos_6nt_mkv3_m12 versus MA0130.1 (ZNF354C); m=12/13; ncol2=6; w=6; offset=0; strand=D; shift=5; score=0.416864; -----mTCCAC--------- ; cor=; Ncor= a 0 0 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0 0 0

MA0736.1_shift8 (GLIS2)
; oligos_6nt_mkv3_m12 versus MA0736.1 (GLIS2); m=13/13; ncol2=14; w=10; offset=3; strand=D; shift=8; score=0.414436; --------kACCCCCCrCra ; cor=; Ncor= a 0 0 0 0 0 0 0 0 74.0 813.0 3.0 4.0 7.0 2.0 56.0 52.0 412.0 3.0 459.0 484.0 c 0 0 0 0 0 0 0 0 179.0 94.0 1072.0 1074.0 1074.0 1087.0 1061.0 1056.0 12.0 1080.0 36.0 16.0 g 0 0 0 0 0 0 0 0 929.0 130.0 3.0 0.0 0.0 0.0 0.0 1.0 915.0 28.0 909.0 234.0 t 0 0 0 0 0 0 0 0 439.0 1.0 5.0 1.0 14.0 0.0 4.0 99.0 50.0 69.0 64.0 228.0

One-to-n matrix alignment; reference matrix: dyads_m15_shift1 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m15_shift1 (dyads_m15dyads_m15)
; dyads_m15 (dyads_m15dyads_m15); m=0 (reference); ncol1=11; shift=1; ncol=14; -ssCCGCCGCss-- ; Alignment reference a 0 60 60 17 0 15 11 0 10 7 36 60 0 0 c 0 314 166 479 539 12 537 534 15 558 265 169 0 0 g 0 154 316 73 55 567 35 60 564 19 245 308 0 0 t 0 66 52 25 0 0 11 0 5 10 48 57 0 0

MA1513.1_shift0 (KLF15)
; dyads_m15 versus MA1513.1 (KLF15); m=1/2; ncol2=11; w=10; offset=-1; strand=D; shift=0; score=0.588135; scCCCGCCCcs--- ; cor=; Ncor= a 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 c 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 g 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 t 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0

MA0748.2_rc_shift4 (YY2_rc)
; dyads_m15 versus MA0748.2_rc (YY2_rc); m=2/2; ncol2=11; w=8; offset=3; strand=R; shift=4; score=0.419854; ----sgCCGCCATs ; cor=; Ncor= a 0 0 0 0 857.0 947.0 303.0 79.0 186.0 101.0 27.0 5248.0 36.0 674.0 c 0 0 0 0 2373.0 920.0 4474.0 5231.0 25.0 5376.0 5509.0 125.0 359.0 2143.0 g 0 0 0 0 1535.0 2876.0 516.0 330.0 5384.0 101.0 120.0 273.0 46.0 1607.0 t 0 0 0 0 939.0 961.0 411.0 64.0 109.0 126.0 48.0 58.0 5263.0 1280.0

One-to-n matrix alignment; reference matrix: dyads_m42_shift4 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m42_shift4 (dyads_m42dyads_m42)
; dyads_m42 (dyads_m42dyads_m42); m=0 (reference); ncol1=10; shift=4; ncol=16; ----caCACACAsa-- ; Alignment reference a 0 0 0 0 164 835 0 1512 0 1512 0 1512 120 813 0 0 c 0 0 0 0 905 304 1512 0 1512 0 1512 0 872 334 0 0 g 0 0 0 0 249 215 0 0 0 0 0 0 390 205 0 0 t 0 0 0 0 194 158 0 0 0 0 0 0 130 160 0 0

MA1523.1_shift3 (MSANTD3)
; dyads_m42 versus MA1523.1 (MSANTD3); m=1/5; ncol2=10; w=9; offset=-1; strand=D; shift=3; score=0.586018; ---stmCACTCAm--- ; cor=; Ncor= a 0 0 0 98.0 111.0 332.0 64.0 980.0 31.0 37.0 47.0 775.0 271.0 0 0 0 c 0 0 0 269.0 211.0 272.0 723.0 0.0 896.0 7.0 862.0 140.0 568.0 0 0 0 g 0 0 0 515.0 220.0 249.0 31.0 2.0 27.0 0.0 29.0 24.0 63.0 0 0 0 t 0 0 0 117.0 456.0 145.0 180.0 16.0 45.0 954.0 60.0 59.0 96.0 0 0 0

MA1155.1_shift4 (ZSCAN4)
; dyads_m42 versus MA1155.1 (ZSCAN4); m=2/5; ncol2=15; w=10; offset=0; strand=D; shift=4; score=0.49631; ----tGCACACmCTGa ; cor=; Ncor= a 0 0 0 0 257.0 290.0 0.0 1292.0 0.0 1281.0 3.0 772.0 7.0 8.0 3.0 1118.0 c 0 0 0 0 383.0 2.0 1676.0 0.0 1665.0 0.0 1702.0 374.0 1684.0 11.0 50.0 107.0 g 0 0 0 0 112.0 1737.0 1.0 0.0 0.0 2.0 0.0 320.0 0.0 75.0 1873.0 230.0 t 0 0 0 0 1373.0 0.0 0.0 2.0 0.0 2.0 73.0 8.0 2.0 1699.0 218.0 362.0

MA1107.2_shift0 (KLF9)
; dyads_m42 versus MA1107.2 (KLF9); m=3/5; ncol2=16; w=10; offset=-4; strand=D; shift=0; score=0.48148; crgCCACACCCAChyc ; cor=; Ncor= a 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 5875.0 c 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 9519.0 g 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 5681.0 t 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0 4504.0

MA0493.1_shift1 (Klf1)
; dyads_m42 versus MA0493.1 (Klf1); m=4/5; ncol2=11; w=8; offset=-3; strand=D; shift=1; score=0.437298; -rrCCACACCCw---- ; cor=; Ncor= a 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 0 c 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 0 g 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0 0

MA0006.1_rc_shift6 (Ahr::Arnt_rc)
; dyads_m42 versus MA0006.1_rc (Ahr::Arnt_rc); m=5/5; ncol2=6; w=6; offset=2; strand=R; shift=6; score=0.43454; ------CACGCr---- ; cor=; Ncor= a 0 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 11.0 0 0 0 0 c 0 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 2.0 0 0 0 0 g 0 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 8.0 0 0 0 0 t 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 3.0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m6_shift0 ; 16 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m6_shift0 (dyads_m6dyads_m6)
; dyads_m6 (dyads_m6dyads_m6); m=0 (reference); ncol1=18; shift=0; ncol=18; gsCACAGCTGCTGTCass ; Alignment reference a 22 22 4 86 2 101 1 1 11 1 3 3 4 3 2 51 18 14 c 25 32 82 3 96 0 6 98 0 1 89 1 5 10 81 20 30 35 g 32 26 12 7 2 0 93 0 0 100 4 2 90 4 11 11 39 30 t 23 22 4 6 2 1 2 3 91 0 6 96 3 85 8 20 15 23

MA0832.1_shift0 (Tcf21)
; dyads_m6 versus MA0832.1 (Tcf21); m=1/15; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.583827; ryAACAGCTGTTry---- ; cor=; Ncor= a 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 0 0 c 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 0 0 g 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 0 0 t 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0 0 0

MA0500.2_shift1 (MYOG)
; dyads_m6 versus MA0500.2 (MYOG); m=2/15; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.543146; -sarCAGCTGyts----- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0

MA0499.2_rc_shift0 (MYOD1_rc)
; dyads_m6 versus MA0499.2_rc (MYOD1_rc); m=3/15; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.539131; rkrACAGGTGcwg----- ; cor=; Ncor= a 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 0 0 c 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 0 0 g 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 0 0 t 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0 0 0

MA1619.1_shift1 (Ptf1a(var.2))
; dyads_m6 versus MA1619.1 (Ptf1a(var.2)); m=4/15; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.532205; -rmaCAGCTGtky----- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0

MA1641.1_shift1 (MYF5)
; dyads_m6 versus MA1641.1 (MYF5); m=5/15; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.526428; -gvaCAGCTGtbc----- ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0

MA0521.1_shift2 (Tcf12)
; dyads_m6 versus MA0521.1 (Tcf12); m=6/15; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.50221; --rRCAGCTGswg----- ; cor=; Ncor= a 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 0 c 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 0 g 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 0 t 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0 0

MA0048.2_shift2 (NHLH1)
; dyads_m6 versus MA0048.2 (NHLH1); m=7/15; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.473159; --cGCAGCTGCk------ ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0 0

MA0816.1_shift2 (Ascl2)
; dyads_m6 versus MA0816.1 (Ascl2); m=8/15; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.470972; --arCAGCTGyy------ ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0

MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)
; dyads_m6 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=9/15; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.467014; --rrCAGCTGbt------ ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0 0

MA1635.1_shift2 (BHLHE22(var.2))
; dyads_m6 versus MA1635.1 (BHLHE22(var.2)); m=10/15; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.456948; --csCAGCTGsg------ ; cor=; Ncor= a 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 0 c 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 0 g 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 0 t 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0 0

MA1100.2_rc_shift2 (ASCL1_rc)
; dyads_m6 versus MA1100.2_rc (ASCL1_rc); m=11/15; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.450523; --rgCAGCTGyy------ ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0

MA0665.1_shift2 (MSC)
; dyads_m6 versus MA0665.1 (MSC); m=12/15; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.443021; --AACAGCTGTT------ ; cor=; Ncor= a 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 0 0 c 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 0 0 g 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 0 0 t 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0 0 0

MA1467.1_rc_shift2 (ATOH1(var.2)_rc)
; dyads_m6 versus MA1467.1_rc (ATOH1(var.2)_rc); m=13/15; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.442651; --RACAGCTGTT------ ; cor=; Ncor= a 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 0 c 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 0 g 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 0 t 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0 0

MA0691.1_shift2 (TFAP4)
; dyads_m6 versus MA0691.1 (TFAP4); m=14/15; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.441611; --AwCAGCTGwT------ ; cor=; Ncor= a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 0 0 c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 0 0 g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 0 0 t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0 0 0

MA0667.1_rc_shift2 (MYF6_rc)
; dyads_m6 versus MA0667.1_rc (MYF6_rc); m=15/15; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.415267; --RACAGyTGTT------ ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 0 0 c 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 0 0 g 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 0 0 t 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_6nt_m1_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m1_shift0 (local_words_6nt_m1local_words_6nt_m1)
; local_words_6nt_m1 (local_words_6nt_m1local_words_6nt_m1); m=0 (reference); ncol1=22; shift=0; ncol=22; rsCtGCAGCAGCTGCTGCagsy ; Alignment reference a 51 21 12 30 10 10 139 8 1 171 2 0 8 0 1 26 4 8 96 30 17 39 c 40 47 130 23 13 138 8 1 179 0 2 178 0 1 167 12 26 153 31 40 93 52 g 49 94 20 24 153 25 11 171 1 1 177 1 1 178 3 10 138 10 22 90 49 41 t 41 19 19 104 5 8 23 1 0 9 0 2 172 2 10 133 13 10 32 21 22 49

MA1529.1_shift2 (NHLH2)
; local_words_6nt_m1 versus MA1529.1 (NHLH2); m=1/10; ncol2=18; w=18; offset=2; strand=D; shift=2; score=0.577433; --ggGyMGCAGCTGCGyCmc-- ; cor=; Ncor= a 0 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 0 0 c 0 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 0 0 g 0 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 0 0 t 0 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0 0 0

MA1485.1_rc_shift4 (FERD3L_rc)
; local_words_6nt_m1 versus MA1485.1_rc (FERD3L_rc); m=2/10; ncol2=14; w=14; offset=4; strand=R; shift=4; score=0.485619; ----GTrACAGCTGkyrC---- ; cor=; Ncor= a 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 c 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 g 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 t 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0

MA0500.2_rc_shift5 (MYOG_rc)
; local_words_6nt_m1 versus MA0500.2_rc (MYOG_rc); m=3/10; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.478611; -----sarCAGCTGyts----- ; cor=; Ncor= a 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0 c 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0 g 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0 t 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0

MA0832.1_rc_shift4 (Tcf21_rc)
; local_words_6nt_m1 versus MA0832.1_rc (Tcf21_rc); m=4/10; ncol2=14; w=14; offset=4; strand=R; shift=4; score=0.449522; ----ryAACAGCTGTTry---- ; cor=; Ncor= a 0 0 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 c 0 0 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 g 0 0 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 t 0 0 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0

MA0816.1_shift6 (Ascl2)
; local_words_6nt_m1 versus MA0816.1 (Ascl2); m=5/10; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.432828; ------arCAGCTGyy------ ; cor=; Ncor= a 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0 c 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0 g 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0 t 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0

MA1631.1_rc_shift4 (ASCL1(var.2)_rc)
; local_words_6nt_m1 versus MA1631.1_rc (ASCL1(var.2)_rc); m=6/10; ncol2=13; w=13; offset=4; strand=R; shift=4; score=0.430775; ----gsrGCAGGTGchg----- ; cor=; Ncor= a 0 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 0 0 c 0 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 0 0 g 0 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 0 0 t 0 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0 0 0

MA0830.2_shift5 (TCF4)
; local_words_6nt_m1 versus MA0830.2 (TCF4); m=7/10; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.419447; -----cggCACCTGccss---- ; cor=; Ncor= a 0 0 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 0 0 c 0 0 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 0 0 g 0 0 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 0 0 t 0 0 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0 0 0

MA0521.1_shift6 (Tcf12)
; local_words_6nt_m1 versus MA0521.1 (Tcf12); m=8/10; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.419369; ------rRCAGCTGswg----- ; cor=; Ncor= a 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 0 c 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 0 g 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 0 t 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0 0

MA0048.2_rc_shift6 (NHLH1_rc)
; local_words_6nt_m1 versus MA0048.2_rc (NHLH1_rc); m=9/10; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.408309; ------mGCAGCTGCg------ ; cor=; Ncor= a 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 0 0 c 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 0 0 g 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 0 0 t 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0 0 0

MA1100.2_shift6 (ASCL1)
; local_words_6nt_m1 versus MA1100.2 (ASCL1); m=10/10; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.407688; ------rrCAGCTGcy------ ; cor=; Ncor= a 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 0 0 c 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 0 0 g 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 0 0 t 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m19_shift0 ; 18 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m19_shift0 (dyads_m19dyads_m19)
; dyads_m19 (dyads_m19dyads_m19); m=0 (reference); ncol1=18; shift=0; ncol=18; rvtGACAGCAGCTGCarc ; Alignment reference a 39 31 23 12 108 1 116 7 1 114 0 0 1 0 1 76 31 27 c 28 39 15 16 2 111 2 2 122 1 1 116 0 0 111 18 25 47 g 37 33 21 88 9 10 2 114 0 0 121 7 0 123 7 9 49 30 t 19 20 64 7 4 1 3 0 0 8 1 0 122 0 4 20 18 19

MA0500.2_rc_shift5 (MYOG_rc)
; dyads_m19 versus MA0500.2_rc (MYOG_rc); m=1/17; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.575118; -----sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA1631.1_shift5 (ASCL1(var.2))
; dyads_m19 versus MA1631.1 (ASCL1(var.2)); m=2/17; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.528001; -----cdgCACCTGCysc ; cor=; Ncor= a 0 0 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 c 0 0 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 g 0 0 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 t 0 0 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0

MA0521.1_shift6 (Tcf12)
; dyads_m19 versus MA0521.1 (Tcf12); m=3/17; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.525157; ------rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA0830.2_shift5 (TCF4)
; dyads_m19 versus MA0830.2 (TCF4); m=4/17; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.521582; -----cggCACCTGccss ; cor=; Ncor= a 0 0 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 c 0 0 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 g 0 0 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 t 0 0 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0

MA0816.1_shift6 (Ascl2)
; dyads_m19 versus MA0816.1 (Ascl2); m=5/17; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.508977; ------arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA1100.2_shift6 (ASCL1)
; dyads_m19 versus MA1100.2 (ASCL1); m=6/17; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.493074; ------rrCAGCTGcy-- ; cor=; Ncor= a 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA0048.2_rc_shift6 (NHLH1_rc)
; dyads_m19 versus MA0048.2_rc (NHLH1_rc); m=7/17; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.486582; ------mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA1619.1_shift5 (Ptf1a(var.2))
; dyads_m19 versus MA1619.1 (Ptf1a(var.2)); m=8/17; ncol2=12; w=12; offset=5; strand=D; shift=5; score=0.484407; -----rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA1641.1_rc_shift5 (MYF5_rc)
; dyads_m19 versus MA1641.1_rc (MYF5_rc); m=9/17; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.475568; -----gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0

MA1635.1_rc_shift6 (BHLHE22(var.2)_rc)
; dyads_m19 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=10/17; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.473931; ------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 c 0 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 g 0 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 t 0 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0

MA1646.1_shift2 (OSR2)
; dyads_m19 versus MA1646.1 (OSR2); m=11/17; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.472178; --amaCAGAAGChr---- ; cor=; Ncor= a 0 0 4437.0 4244.0 8520.0 254.0 13599.0 216.0 11678.0 13725.0 416.0 666.0 4386.0 4048.0 0 0 0 0 c 0 0 3641.0 4206.0 2221.0 13937.0 197.0 229.0 703.0 288.0 170.0 12109.0 4274.0 3304.0 0 0 0 0 g 0 0 3246.0 3006.0 2117.0 406.0 737.0 14206.0 901.0 516.0 13982.0 841.0 2266.0 4726.0 0 0 0 0 t 0 0 3484.0 3352.0 1950.0 211.0 275.0 157.0 1526.0 279.0 240.0 1192.0 3882.0 2730.0 0 0 0 0

MA1472.1_shift6 (BHLHA15(var.2))
; dyads_m19 versus MA1472.1 (BHLHA15(var.2)); m=12/17; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.454691; ------avCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0

MA1648.1_rc_shift5 (TCF12(var.2)_rc)
; dyads_m19 versus MA1648.1_rc (TCF12(var.2)_rc); m=13/17; ncol2=11; w=11; offset=5; strand=R; shift=5; score=0.43457; -----srGCAGGTGss-- ; cor=; Ncor= a 0 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 c 0 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 g 0 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 t 0 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0

MA1467.1_shift6 (ATOH1(var.2))
; dyads_m19 versus MA1467.1 (ATOH1(var.2)); m=14/17; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.416316; ------AACAGCTGTY-- ; cor=; Ncor= a 0 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0

MA0691.1_shift6 (TFAP4)
; dyads_m19 versus MA0691.1 (TFAP4); m=15/17; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.414166; ------AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA1559.1_shift6 (SNAI3)
; dyads_m19 versus MA1559.1 (SNAI3); m=16/17; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.412541; ------arCAGGTGya-- ; cor=; Ncor= a 0 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 c 0 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 g 0 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 t 0 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0

MA0665.1_rc_shift6 (MSC_rc)
; dyads_m19 versus MA0665.1_rc (MSC_rc); m=17/17; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.401698; ------AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0

One-to-n matrix alignment; reference matrix: dyads_m21_shift5 ; 16 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m21_shift5 (dyads_m21dyads_m21)
; dyads_m21 (dyads_m21dyads_m21); m=0 (reference); ncol1=10; shift=5; ncol=15; -----sdGGTGACwg ; Alignment reference a 0 0 0 0 0 94 136 0 0 0 3 508 0 202 82 c 0 0 0 0 0 167 66 2 0 17 0 0 508 99 110 g 0 0 0 0 0 156 159 506 508 0 504 0 0 56 210 t 0 0 0 0 0 91 147 0 0 491 1 0 0 151 106

MA0067.1_rc_shift6 (Pax2_rc)
; dyads_m21 versus MA0067.1_rc (Pax2_rc); m=1/15; ncol2=8; w=8; offset=1; strand=R; shift=6; score=0.572384; ------vmrTGAcw- ; cor=; Ncor= a 0 0 0 0 0 0 8.0 10.0 11.0 1.0 2.0 26.0 2.0 9.0 0 c 0 0 0 0 0 0 11.0 19.0 1.0 3.0 1.0 0.0 21.0 5.0 0 g 0 0 0 0 0 0 11.0 0.0 17.0 1.0 28.0 2.0 1.0 7.0 0 t 0 0 0 0 0 0 1.0 2.0 2.0 26.0 0.0 3.0 7.0 10.0 0

MA0498.2_shift8 (MEIS1)
; dyads_m21 versus MA0498.2 (MEIS1); m=2/15; ncol2=7; w=7; offset=3; strand=D; shift=8; score=0.561713; --------wTGACAg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 c 0 0 0 0 0 0 0 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 g 0 0 0 0 0 0 0 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 t 0 0 0 0 0 0 0 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0

MA0595.1_rc_shift3 (SREBF1_rc)
; dyads_m21 versus MA0595.1_rc (SREBF1_rc); m=3/15; ncol2=10; w=8; offset=-2; strand=R; shift=3; score=0.538953; ---rTGGgGTGAy-- ; cor=; Ncor= a 0 0 0 25.0 0.0 0.0 14.0 1.0 0.0 0.0 0.0 58.0 0.0 0 0 c 0 0 0 7.0 0.0 11.0 0.0 13.0 7.0 0.0 0.0 0.0 16.0 0 0 g 0 0 0 26.0 0.0 45.0 44.0 38.0 51.0 0.0 58.0 0.0 14.0 0 0 t 0 0 0 0.0 58.0 2.0 0.0 6.0 0.0 58.0 0.0 0.0 28.0 0 0

MA0775.1_shift8 (MEIS3)
; dyads_m21 versus MA0775.1 (MEIS3); m=4/15; ncol2=8; w=7; offset=3; strand=D; shift=8; score=0.520844; --------wTGACAg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 c 0 0 0 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 g 0 0 0 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 t 0 0 0 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0

MA0596.1_shift3 (SREBF2)
; dyads_m21 versus MA0596.1 (SREBF2); m=5/15; ncol2=10; w=8; offset=-2; strand=D; shift=3; score=0.511814; ---rTGGgGTGAy-- ; cor=; Ncor= a 0 0 0 24.0 0.0 0.0 10.0 2.0 2.0 0.0 0.0 47.0 2.0 0 0 c 0 0 0 9.0 0.0 3.0 0.0 10.0 9.0 0.0 0.0 0.0 16.0 0 0 g 0 0 0 14.0 0.0 44.0 37.0 27.0 36.0 0.0 47.0 0.0 2.0 0 0 t 0 0 0 0.0 47.0 0.0 0.0 8.0 0.0 47.0 0.0 0.0 27.0 0 0

MA0117.2_shift2 (Mafb)
; dyads_m21 versus MA0117.2 (Mafb); m=6/15; ncol2=12; w=9; offset=-3; strand=D; shift=2; score=0.498189; --awwwTGCTGACd- ; cor=; Ncor= a 0 0 1237.0 1263.0 1080.0 744.0 264.0 2.0 295.0 31.0 45.0 2182.0 182.0 582.0 0 c 0 0 174.0 121.0 216.0 398.0 618.0 14.0 2182.0 36.0 13.0 13.0 2182.0 138.0 0 g 0 0 326.0 159.0 182.0 429.0 31.0 2182.0 5.0 2.0 2182.0 17.0 490.0 646.0 0 t 0 0 446.0 639.0 704.0 611.0 2182.0 5.0 7.0 2182.0 170.0 13.0 273.0 816.0 0

MA0258.2_rc_shift0 (ESR2_rc)
; dyads_m21 versus MA0258.2_rc (ESR2_rc); m=7/15; ncol2=15; w=10; offset=-5; strand=R; shift=0; score=0.487462; rGGtCasksTGACCy ; cor=; Ncor= a 4095.0 1278.0 977.0 1518.0 66.0 5133.0 1752.0 1228.0 801.0 87.0 89.0 7033.0 41.0 644.0 174.0 c 606.0 0.0 363.0 1391.0 6658.0 533.0 2173.0 1688.0 2738.0 57.0 533.0 989.0 8143.0 7170.0 2563.0 g 2708.0 5854.0 6469.0 2056.0 398.0 975.0 2510.0 3235.0 4202.0 1.0 7621.0 147.0 0.0 0.0 96.0 t 834.0 1111.0 434.0 3278.0 1121.0 1602.0 1808.0 2092.0 502.0 8098.0 0.0 74.0 59.0 429.0 5410.0

MA0774.1_shift8 (MEIS2)
; dyads_m21 versus MA0774.1 (MEIS2); m=8/15; ncol2=8; w=7; offset=3; strand=D; shift=8; score=0.485195; --------tTGACAG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 c 0 0 0 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 g 0 0 0 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 t 0 0 0 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0

MA1132.1_shift7 (JUN::JUNB)
; dyads_m21 versus MA1132.1 (JUN::JUNB); m=9/15; ncol2=10; w=8; offset=2; strand=D; shift=7; score=0.473536; -------kaTGACkC ; cor=; Ncor= a 0 0 0 0 0 0 0 203.0 627.0 11.0 10.0 944.0 27.0 58.0 161.0 c 0 0 0 0 0 0 0 128.0 134.0 10.0 21.0 10.0 826.0 24.0 707.0 g 0 0 0 0 0 0 0 408.0 189.0 34.0 921.0 28.0 115.0 353.0 10.0 t 0 0 0 0 0 0 0 261.0 50.0 946.0 47.0 18.0 33.0 565.0 122.0

MA0513.1_rc_shift6 (SMAD2::SMAD3::SMAD4_rc)
; dyads_m21 versus MA0513.1_rc (SMAD2::SMAD3::SMAD4_rc); m=10/15; ncol2=13; w=9; offset=1; strand=R; shift=6; score=0.47072; ------agGTGmsAG ; cor=; Ncor= a 0 0 0 0 0 0 540.0 152.0 0.0 97.0 0.0 283.0 23.0 899.0 0.0 c 0 0 0 0 0 0 35.0 47.0 133.0 18.0 3.0 280.0 539.0 0.0 0.0 g 0 0 0 0 0 0 214.0 583.0 736.0 19.0 896.0 125.0 231.0 0.0 899.0 t 0 0 0 0 0 0 110.0 117.0 30.0 765.0 0.0 211.0 106.0 0.0 0.0

MA0160.1_rc_shift8 (NR4A2_rc)
; dyads_m21 versus MA0160.1_rc (NR4A2_rc); m=11/15; ncol2=8; w=7; offset=3; strand=R; shift=8; score=0.467687; --------gTGACCT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 0.0 1.0 10.0 0.0 1.0 0.0 c 0 0 0 0 0 0 0 0 2.0 0.0 0.0 0.0 11.0 13.0 1.0 g 0 0 0 0 0 0 0 0 8.0 0.0 13.0 2.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0 0 3.0 14.0 0.0 2.0 3.0 0.0 13.0

MA0842.2_shift1 (NRL)
; dyads_m21 versus MA0842.2 (NRL); m=12/15; ncol2=13; w=9; offset=-4; strand=D; shift=1; score=0.455142; -aawwrTGCTGACg- ; cor=; Ncor= a 0 14408.0 21189.0 17467.0 14033.0 6835.0 581.0 1.0 1008.0 0.0 73.0 27228.0 47.0 6001.0 0 c 0 3102.0 838.0 319.0 1314.0 5669.0 2768.0 0.0 27228.0 8.0 0.0 0.0 27228.0 1669.0 0 g 0 5588.0 3685.0 635.0 822.0 7983.0 68.0 27228.0 22.0 0.0 27228.0 4.0 559.0 14528.0 0 t 0 4130.0 6039.0 9761.0 13194.0 6741.0 27228.0 0.0 14.0 27228.0 1036.0 0.0 2394.0 5030.0 0

MA0604.1_shift8 (Atf1)
; dyads_m21 versus MA0604.1 (Atf1); m=13/15; ncol2=8; w=7; offset=3; strand=D; shift=8; score=0.453859; --------rTGACGT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 462.0 24.0 0.0 1000.0 0.0 7.0 90.0 c 0 0 0 0 0 0 0 0 86.0 16.0 22.0 0.0 1000.0 0.0 198.0 g 0 0 0 0 0 0 0 0 387.0 0.0 803.0 0.0 0.0 993.0 0.0 t 0 0 0 0 0 0 0 0 65.0 960.0 175.0 0.0 0.0 0.0 712.0

MA1535.1_rc_shift8 (NR2C1_rc)
; dyads_m21 versus MA1535.1_rc (NR2C1_rc); m=14/15; ncol2=9; w=7; offset=3; strand=R; shift=8; score=0.434223; --------rTGACCy ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2499.0 0.0 0.0 9622.0 0.0 297.0 55.0 c 0 0 0 0 0 0 0 0 2039.0 1716.0 321.0 271.0 9622.0 9622.0 4756.0 g 0 0 0 0 0 0 0 0 2786.0 0.0 9622.0 0.0 0.0 0.0 227.0 t 0 0 0 0 0 0 0 0 2298.0 9622.0 0.0 0.0 0.0 0.0 4866.0

MA1143.1_shift8 (FOSL1::JUND(var.2))
; dyads_m21 versus MA1143.1 (FOSL1::JUND(var.2)); m=15/15; ncol2=10; w=7; offset=3; strand=D; shift=8; score=0.408493; --------rTGACgy ; cor=; Ncor= a 0 0 0 0 0 0 0 0 561.0 36.0 39.0 870.0 32.0 116.0 117.0 c 0 0 0 0 0 0 0 0 75.0 50.0 101.0 45.0 835.0 59.0 262.0 g 0 0 0 0 0 0 0 0 324.0 44.0 777.0 41.0 64.0 649.0 39.0 t 0 0 0 0 0 0 0 0 40.0 870.0 82.0 44.0 68.0 176.0 582.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m25_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m25_shift0 (oligos_7nt_mkv4_m25oligos_7nt_mkv4_m25)
; oligos_7nt_mkv4_m25 (oligos_7nt_mkv4_m25oligos_7nt_mkv4_m25); m=0 (reference); ncol1=12; shift=0; ncol=12; ssCAAGCTTGsc ; Alignment reference a 11 10 2 54 55 2 1 0 0 1 7 10 c 15 18 51 0 2 0 54 0 3 2 22 22 g 21 22 2 3 0 54 0 2 0 52 18 14 t 10 7 2 0 0 1 2 55 54 2 10 11

MA0164.1_shift2 (Nr2e3)
; oligos_7nt_mkv4_m25 versus MA0164.1 (Nr2e3); m=1/1; ncol2=7; w=7; offset=2; strand=D; shift=2; score=0.569259; --cAAGCTT--- ; cor=; Ncor= a 0 0 4.0 23.0 23.0 0.0 0.0 0.0 0.0 0 0 0 c 0 0 12.0 0.0 0.0 1.0 23.0 0.0 0.0 0 0 0 g 0 0 2.0 0.0 0.0 22.0 0.0 0.0 0.0 0 0 0 t 0 0 5.0 0.0 0.0 0.0 0.0 23.0 23.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m6_shift0 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m6_shift0 (oligos_6nt_mkv3_m6oligos_6nt_mkv3_m6)
; oligos_6nt_mkv3_m6 (oligos_6nt_mkv3_m6oligos_6nt_mkv3_m6); m=0 (reference); ncol1=16; shift=0; ncol=16; csCCGCCCCGCCGCss ; Alignment reference a 10 10 6 4 3 3 4 1 2 4 2 4 3 3 12 10 c 89 78 136 138 19 142 133 133 144 14 141 143 27 144 74 62 g 39 50 14 16 128 10 23 17 13 142 13 12 124 10 58 68 t 23 23 5 3 11 6 1 10 2 1 5 2 7 4 17 21

MA1513.1_shift4 (KLF15)
; oligos_6nt_mkv3_m6 versus MA1513.1 (KLF15); m=1/5; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.568134; ----scCCCGCCCcs- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0

MA1564.1_shift4 (SP9)
; oligos_6nt_mkv3_m6 versus MA1564.1 (SP9); m=2/5; ncol2=12; w=12; offset=4; strand=D; shift=4; score=0.526914; ----rcCmCGCCCmcy ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0

MA1653.1_shift3 (ZNF148)
; oligos_6nt_mkv3_m6 versus MA1653.1 (ZNF148); m=3/5; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.525225; ---ysCCCCTCCCcc- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0

MA0741.1_shift4 (KLF16)
; oligos_6nt_mkv3_m6 versus MA0741.1 (KLF16); m=4/5; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.493498; ----gmCMCgCCCMC- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0

MA0599.1_shift4 (KLF5)
; oligos_6nt_mkv3_m6 versus MA0599.1 (KLF5); m=5/5; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.472836; ----gCCMCrCCCh-- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0

One-to-n matrix alignment; reference matrix: dyads_m4_shift0 ; 16 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m4_shift0 (dyads_m4dyads_m4)
; dyads_m4 (dyads_m4dyads_m4); m=0 (reference); ncol1=18; shift=0; ncol=18; sstGACAGCAGCTGCChc ; Alignment reference a 27 25 19 6 98 0 111 9 1 104 0 0 2 0 4 14 38 20 c 31 35 13 13 4 109 1 3 114 1 2 110 2 0 99 83 30 49 g 38 36 27 89 8 4 1 102 0 1 112 5 0 115 5 8 18 26 t 19 19 56 7 5 2 2 1 0 9 1 0 111 0 7 10 29 20

MA0500.2_rc_shift5 (MYOG_rc)
; dyads_m4 versus MA0500.2_rc (MYOG_rc); m=1/15; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.567925; -----sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA1631.1_shift5 (ASCL1(var.2))
; dyads_m4 versus MA1631.1 (ASCL1(var.2)); m=2/15; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.546708; -----cdgCACCTGCysc ; cor=; Ncor= a 0 0 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 c 0 0 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 g 0 0 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 t 0 0 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0

MA0830.2_shift5 (TCF4)
; dyads_m4 versus MA0830.2 (TCF4); m=3/15; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.531562; -----cggCACCTGccss ; cor=; Ncor= a 0 0 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 c 0 0 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 g 0 0 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 t 0 0 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0

MA0816.1_shift6 (Ascl2)
; dyads_m4 versus MA0816.1 (Ascl2); m=4/15; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.513268; ------arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA0521.1_shift6 (Tcf12)
; dyads_m4 versus MA0521.1 (Tcf12); m=5/15; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.510771; ------rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA1100.2_shift6 (ASCL1)
; dyads_m4 versus MA1100.2 (ASCL1); m=6/15; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.496133; ------rrCAGCTGcy-- ; cor=; Ncor= a 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA1619.1_shift5 (Ptf1a(var.2))
; dyads_m4 versus MA1619.1 (Ptf1a(var.2)); m=7/15; ncol2=12; w=12; offset=5; strand=D; shift=5; score=0.484305; -----rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA1641.1_rc_shift5 (MYF5_rc)
; dyads_m4 versus MA1641.1_rc (MYF5_rc); m=8/15; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.481395; -----gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0

MA0048.2_rc_shift6 (NHLH1_rc)
; dyads_m4 versus MA0048.2_rc (NHLH1_rc); m=9/15; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.479065; ------mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA1646.1_shift2 (OSR2)
; dyads_m4 versus MA1646.1 (OSR2); m=10/15; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.471187; --amaCAGAAGChr---- ; cor=; Ncor= a 0 0 4437.0 4244.0 8520.0 254.0 13599.0 216.0 11678.0 13725.0 416.0 666.0 4386.0 4048.0 0 0 0 0 c 0 0 3641.0 4206.0 2221.0 13937.0 197.0 229.0 703.0 288.0 170.0 12109.0 4274.0 3304.0 0 0 0 0 g 0 0 3246.0 3006.0 2117.0 406.0 737.0 14206.0 901.0 516.0 13982.0 841.0 2266.0 4726.0 0 0 0 0 t 0 0 3484.0 3352.0 1950.0 211.0 275.0 157.0 1526.0 279.0 240.0 1192.0 3882.0 2730.0 0 0 0 0

MA1635.1_rc_shift6 (BHLHE22(var.2)_rc)
; dyads_m4 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=11/15; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.470202; ------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 c 0 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 g 0 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 t 0 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0

MA1472.1_shift6 (BHLHA15(var.2))
; dyads_m4 versus MA1472.1 (BHLHA15(var.2)); m=12/15; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.460299; ------avCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0

MA1467.1_shift6 (ATOH1(var.2))
; dyads_m4 versus MA1467.1 (ATOH1(var.2)); m=13/15; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.454727; ------AACAGCTGTY-- ; cor=; Ncor= a 0 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0

MA0691.1_shift6 (TFAP4)
; dyads_m4 versus MA0691.1 (TFAP4); m=14/15; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.416827; ------AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA0665.1_rc_shift6 (MSC_rc)
; dyads_m4 versus MA0665.1_rc (MSC_rc); m=15/15; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.40585; ------AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0

One-to-n matrix alignment; reference matrix: dyads_m9_shift0 ; 14 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m9_shift0 (dyads_m9dyads_m9)
; dyads_m9 (dyads_m9dyads_m9); m=0 (reference); ncol1=18; shift=0; ncol=20; vstGACAGCAGCTGaGsc-- ; Alignment reference a 22 15 16 7 66 1 76 1 0 64 1 0 0 1 49 6 15 13 0 0 c 21 27 10 3 2 71 2 0 78 0 0 76 1 3 15 10 26 32 0 0 g 24 31 11 64 9 6 0 76 0 0 77 2 0 73 9 58 27 18 0 0 t 11 5 41 4 1 0 0 1 0 14 0 0 77 1 5 4 10 15 0 0

MA1529.1_shift2 (NHLH2)
; dyads_m9 versus MA1529.1 (NHLH2); m=1/13; ncol2=18; w=16; offset=2; strand=D; shift=2; score=0.564472; --ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 0 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 0 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 0 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 0 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0500.2_rc_shift5 (MYOG_rc)
; dyads_m9 versus MA0500.2_rc (MYOG_rc); m=2/13; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.532949; -----sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0521.1_shift6 (Tcf12)
; dyads_m9 versus MA0521.1 (Tcf12); m=3/13; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.492707; ------rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1619.1_shift5 (Ptf1a(var.2))
; dyads_m9 versus MA1619.1 (Ptf1a(var.2)); m=4/13; ncol2=12; w=12; offset=5; strand=D; shift=5; score=0.482147; -----rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0048.2_rc_shift6 (NHLH1_rc)
; dyads_m9 versus MA0048.2_rc (NHLH1_rc); m=5/13; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.479663; ------mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1641.1_rc_shift5 (MYF5_rc)
; dyads_m9 versus MA1641.1_rc (MYF5_rc); m=6/13; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.469748; -----gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1646.1_shift2 (OSR2)
; dyads_m9 versus MA1646.1 (OSR2); m=7/13; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.467713; --amaCAGAAGChr------ ; cor=; Ncor= a 0 0 4437.0 4244.0 8520.0 254.0 13599.0 216.0 11678.0 13725.0 416.0 666.0 4386.0 4048.0 0 0 0 0 0 0 c 0 0 3641.0 4206.0 2221.0 13937.0 197.0 229.0 703.0 288.0 170.0 12109.0 4274.0 3304.0 0 0 0 0 0 0 g 0 0 3246.0 3006.0 2117.0 406.0 737.0 14206.0 901.0 516.0 13982.0 841.0 2266.0 4726.0 0 0 0 0 0 0 t 0 0 3484.0 3352.0 1950.0 211.0 275.0 157.0 1526.0 279.0 240.0 1192.0 3882.0 2730.0 0 0 0 0 0 0

MA0816.1_shift6 (Ascl2)
; dyads_m9 versus MA0816.1 (Ascl2); m=8/13; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.459324; ------arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1635.1_shift6 (BHLHE22(var.2))
; dyads_m9 versus MA1635.1 (BHLHE22(var.2)); m=9/13; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.454872; ------csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1100.2_shift6 (ASCL1)
; dyads_m9 versus MA1100.2 (ASCL1); m=10/13; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.445902; ------rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1472.1_shift6 (BHLHA15(var.2))
; dyads_m9 versus MA1472.1 (BHLHA15(var.2)); m=11/13; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.434458; ------avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA0691.1_shift6 (TFAP4)
; dyads_m9 versus MA0691.1 (TFAP4); m=12/13; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.434096; ------AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; dyads_m9 versus MA1467.1_rc (ATOH1(var.2)_rc); m=13/13; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.423034; ---RACAGCTGTT------- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m40_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m40_shift0 (oligos_6nt_mkv3_m40oligos_6nt_mkv3_m40)
; oligos_6nt_mkv3_m40 (oligos_6nt_mkv3_m40oligos_6nt_mkv3_m40); m=0 (reference); ncol1=16; shift=0; ncol=17; sssCGGCGGGGCGGss- ; Alignment reference a 17 10 6 5 3 4 3 1 2 2 4 1 1 2 11 7 0 c 32 29 52 70 6 9 88 5 14 8 5 92 8 7 32 25 0 g 36 47 35 19 83 81 4 90 81 87 86 3 87 88 46 60 0 t 12 11 4 3 5 3 2 1 0 0 2 1 1 0 8 5 0

MA1513.1_rc_shift1 (KLF15_rc)
; oligos_6nt_mkv3_m40 versus MA1513.1_rc (KLF15_rc); m=1/3; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.564006; -sgGGGCGGGgs----- ; cor=; Ncor= a 0 2165.0 1602.0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 1744.0 0 0 0 0 0 c 0 3124.0 1934.0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 5538.0 0 0 0 0 0 g 0 5013.0 6267.0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 2903.0 0 0 0 0 0 t 0 1067.0 1566.0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 1184.0 0 0 0 0 0

MA0599.1_rc_shift2 (KLF5_rc)
; oligos_6nt_mkv3_m40 versus MA0599.1_rc (KLF5_rc); m=2/3; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.467837; --dGGGyGKGGc----- ; cor=; Ncor= a 0 0 4101.0 476.0 0.0 0.0 3378.0 0.0 565.0 1603.0 1711.0 2587.0 0 0 0 0 0 c 0 0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 7572.0 0 0 0 0 0 g 0 0 5595.0 13135.0 13611.0 13611.0 0.0 13611.0 9569.0 12008.0 11900.0 2023.0 0 0 0 0 0 t 0 0 3915.0 0.0 0.0 0.0 5051.0 0.0 3477.0 0.0 0.0 1429.0 0 0 0 0 0

MA1564.1_rc_shift5 (SP9_rc)
; oligos_6nt_mkv3_m40 versus MA1564.1_rc (SP9_rc); m=3/3; ncol2=12; w=11; offset=5; strand=R; shift=5; score=0.45802; -----rgkGGGCGkGgy ; cor=; Ncor= a 0 0 0 0 0 660.0 588.0 353.0 412.0 30.0 14.0 173.0 9.0 96.0 284.0 518.0 226.0 c 0 0 0 0 0 204.0 191.0 38.0 24.0 0.0 0.0 2451.0 17.0 56.0 113.0 309.0 952.0 g 0 0 0 0 0 1167.0 1863.0 1259.0 2451.0 2451.0 2451.0 200.0 2451.0 1127.0 2451.0 2451.0 440.0 t 0 0 0 0 0 420.0 188.0 1192.0 39.0 0.0 22.0 211.0 2.0 2451.0 321.0 566.0 834.0

One-to-n matrix alignment; reference matrix: local_words_6nt_m12_shift0 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m12_shift0 (local_words_6nt_m12local_words_6nt_m12)
; local_words_6nt_m12 (local_words_6nt_m12local_words_6nt_m12); m=0 (reference); ncol1=19; shift=0; ncol=22; gcAGCTGCAGCAGCTGmsg--- ; Alignment reference a 22 19 105 6 4 16 8 6 103 7 0 115 3 2 5 1 39 27 25 0 0 0 c 28 65 9 0 121 8 2 109 6 3 127 3 0 124 3 3 57 42 30 0 0 0 g 64 25 12 123 3 11 115 7 9 118 2 1 126 2 3 124 15 35 58 0 0 0 t 15 20 3 0 1 94 4 7 11 1 0 10 0 1 118 1 18 25 16 0 0 0

MA0500.2_rc_shift7 (MYOG_rc)
; local_words_6nt_m12 versus MA0500.2_rc (MYOG_rc); m=1/20; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.563633; -------sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1485.1_shift6 (FERD3L)
; local_words_6nt_m12 versus MA1485.1 (FERD3L); m=2/20; ncol2=14; w=13; offset=6; strand=D; shift=6; score=0.520292; ------GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0521.1_shift8 (Tcf12)
; local_words_6nt_m12 versus MA0521.1 (Tcf12); m=3/20; ncol2=11; w=11; offset=8; strand=D; shift=8; score=0.510976; --------rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1631.1_rc_shift6 (ASCL1(var.2)_rc)
; local_words_6nt_m12 versus MA1631.1_rc (ASCL1(var.2)_rc); m=4/20; ncol2=13; w=13; offset=6; strand=R; shift=6; score=0.499732; ------gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 0 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 0 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 0 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 0 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0

MA1619.1_shift7 (Ptf1a(var.2))
; local_words_6nt_m12 versus MA1619.1 (Ptf1a(var.2)); m=5/20; ncol2=12; w=12; offset=7; strand=D; shift=7; score=0.497168; -------rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0816.1_shift8 (Ascl2)
; local_words_6nt_m12 versus MA0816.1 (Ascl2); m=6/20; ncol2=10; w=10; offset=8; strand=D; shift=8; score=0.490157; --------arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1641.1_rc_shift7 (MYF5_rc)
; local_words_6nt_m12 versus MA1641.1_rc (MYF5_rc); m=7/20; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.489986; -------gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1529.1_shift4 (NHLH2)
; local_words_6nt_m12 versus MA1529.1 (NHLH2); m=8/20; ncol2=18; w=15; offset=4; strand=D; shift=4; score=0.478186; ----ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 0 0 0 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 0 0 0 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 0 0 0 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 0 0 0 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA1100.2_shift8 (ASCL1)
; local_words_6nt_m12 versus MA1100.2 (ASCL1); m=9/20; ncol2=10; w=10; offset=8; strand=D; shift=8; score=0.477492; --------rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA0048.2_rc_shift8 (NHLH1_rc)
; local_words_6nt_m12 versus MA0048.2_rc (NHLH1_rc); m=10/20; ncol2=10; w=10; offset=8; strand=R; shift=8; score=0.477144; --------mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1635.1_rc_shift8 (BHLHE22(var.2)_rc)
; local_words_6nt_m12 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=11/20; ncol2=10; w=10; offset=8; strand=R; shift=8; score=0.473439; --------csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA0832.1_shift6 (Tcf21)
; local_words_6nt_m12 versus MA0832.1 (Tcf21); m=12/20; ncol2=14; w=13; offset=6; strand=D; shift=6; score=0.466508; ------ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA1472.1_shift8 (BHLHA15(var.2))
; local_words_6nt_m12 versus MA1472.1 (BHLHA15(var.2)); m=13/20; ncol2=10; w=10; offset=8; strand=D; shift=8; score=0.455932; --------avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA0830.2_shift7 (TCF4)
; local_words_6nt_m12 versus MA0830.2 (TCF4); m=14/20; ncol2=13; w=12; offset=7; strand=D; shift=7; score=0.436705; -------cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 0 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 0 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 0 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 0 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA0691.1_shift8 (TFAP4)
; local_words_6nt_m12 versus MA0691.1 (TFAP4); m=15/20; ncol2=10; w=10; offset=8; strand=D; shift=8; score=0.434113; --------AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA1648.1_rc_shift7 (TCF12(var.2)_rc)
; local_words_6nt_m12 versus MA1648.1_rc (TCF12(var.2)_rc); m=16/20; ncol2=11; w=11; offset=7; strand=R; shift=7; score=0.432597; -------srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA1467.1_shift8 (ATOH1(var.2))
; local_words_6nt_m12 versus MA1467.1 (ATOH1(var.2)); m=17/20; ncol2=10; w=10; offset=8; strand=D; shift=8; score=0.429063; --------AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0499.2_shift7 (MYOD1)
; local_words_6nt_m12 versus MA0499.2 (MYOD1); m=18/20; ncol2=13; w=12; offset=7; strand=D; shift=7; score=0.428892; -------cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA0522.3_rc_shift7 (TCF3_rc)
; local_words_6nt_m12 versus MA0522.3_rc (TCF3_rc); m=19/20; ncol2=11; w=11; offset=7; strand=R; shift=7; score=0.423882; -------ssGCAGGTGbs---- ; cor=; Ncor= a 0 0 0 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 c 0 0 0 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 g 0 0 0 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 t 0 0 0 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0

MA0665.1_rc_shift8 (MSC_rc)
; local_words_6nt_m12 versus MA0665.1_rc (MSC_rc); m=20/20; ncol2=10; w=10; offset=8; strand=R; shift=8; score=0.408003; --------AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m43_shift3 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m43_shift3 (oligos_6nt_mkv3_m43oligos_6nt_mkv3_m43)
; oligos_6nt_mkv3_m43 (oligos_6nt_mkv3_m43oligos_6nt_mkv3_m43); m=0 (reference); ncol1=11; shift=3; ncol=18; ---bcTAGCCACms---- ; Alignment reference a 0 0 0 25 30 1 138 9 1 0 132 0 52 19 0 0 0 0 c 0 0 0 44 49 0 6 7 137 139 3 144 40 39 0 0 0 0 g 0 0 0 36 33 3 0 127 3 3 9 0 33 57 0 0 0 0 t 0 0 0 39 32 140 0 1 3 2 0 0 19 29 0 0 0 0

MA0509.2_rc_shift0 (RFX1_rc)
; oligos_6nt_mkv3_m43 versus MA0509.2_rc (RFX1_rc); m=1/6; ncol2=14; w=11; offset=-3; strand=R; shift=0; score=0.556796; tkCCaTrGCAACmr---- ; cor=; Ncor= a 2964.0 3928.0 1388.0 987.0 12054.0 339.0 11211.0 600.0 765.0 16820.0 17390.0 207.0 6733.0 5414.0 0 0 0 0 c 3717.0 3569.0 12433.0 14464.0 2717.0 773.0 103.0 99.0 15836.0 168.0 170.0 17249.0 5166.0 3749.0 0 0 0 0 g 1917.0 5984.0 1564.0 483.0 843.0 313.0 6614.0 17171.0 302.0 518.0 300.0 107.0 2608.0 5591.0 0 0 0 0 t 9394.0 4511.0 2607.0 2058.0 2378.0 16567.0 64.0 122.0 1089.0 486.0 132.0 429.0 3485.0 3238.0 0 0 0 0

MA0002.2_rc_shift5 (RUNX1_rc)
; oligos_6nt_mkv3_m43 versus MA0002.2_rc (RUNX1_rc); m=2/6; ncol2=11; w=9; offset=2; strand=R; shift=5; score=0.497137; -----waaCCACAram-- ; cor=; Ncor= a 0 0 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 0 c 0 0 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 0 g 0 0 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 0 t 0 0 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0 0

MA0079.4_shift4 (SP1)
; oligos_6nt_mkv3_m43 versus MA0079.4 (SP1); m=3/6; ncol2=15; w=10; offset=1; strand=D; shift=4; score=0.451541; ----ywrRCCACGCCCmC ; cor=; Ncor= a 0 0 0 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 c 0 0 0 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 g 0 0 0 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 t 0 0 0 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0

MA0493.1_shift6 (Klf1)
; oligos_6nt_mkv3_m43 versus MA0493.1 (Klf1); m=4/6; ncol2=11; w=8; offset=3; strand=D; shift=6; score=0.421509; ------rrCCACACCCw- ; cor=; Ncor= a 0 0 0 0 0 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 c 0 0 0 0 0 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 g 0 0 0 0 0 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 t 0 0 0 0 0 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0

MA0130.1_shift6 (ZNF354C)
; oligos_6nt_mkv3_m43 versus MA0130.1 (ZNF354C); m=5/6; ncol2=6; w=6; offset=3; strand=D; shift=6; score=0.417178; ------mTCCAC------ ; cor=; Ncor= a 0 0 0 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 c 0 0 0 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 g 0 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 t 0 0 0 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0

MA0685.1_shift4 (SP4)
; oligos_6nt_mkv3_m43 versus MA0685.1 (SP4); m=6/6; ncol2=17; w=10; offset=1; strand=D; shift=4; score=0.409257; ----ywrGCCACGCCCmC ; cor=; Ncor= a 0 0 0 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 c 0 0 0 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 g 0 0 0 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 t 0 0 0 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m36_shift2 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m36_shift2 (oligos_8nt_mkv5_m36oligos_8nt_mkv5_m36)
; oligos_8nt_mkv5_m36 (oligos_8nt_mkv5_m36oligos_8nt_mkv5_m36); m=0 (reference); ncol1=12; shift=2; ncol=14; --msCTGCCACCss ; Alignment reference a 0 0 96 24 1 2 5 1 0 258 2 0 47 38 c 0 0 88 79 270 25 6 269 265 1 270 267 85 89 g 0 0 51 135 2 12 257 0 7 14 0 5 74 117 t 0 0 38 35 0 234 5 3 1 0 1 1 67 29

MA0739.1_shift4 (Hic1)
; oligos_8nt_mkv5_m36 versus MA0739.1 (Hic1); m=1/2; ncol2=9; w=9; offset=2; strand=D; shift=4; score=0.555312; ----rTGCCAaCc- ; cor=; Ncor= a 0 0 0 0 6337.0 62.0 950.0 50.0 88.0 9008.0 6140.0 1220.0 1610.0 0 c 0 0 0 0 719.0 422.0 588.0 11007.0 11007.0 1999.0 1986.0 11007.0 4822.0 0 g 0 0 0 0 4670.0 73.0 11007.0 121.0 31.0 3.0 2267.0 1629.0 1884.0 0 t 0 0 0 0 666.0 11007.0 183.0 0.0 68.0 317.0 614.0 1488.0 2692.0 0

MA0513.1_shift0 (SMAD2::SMAD3::SMAD4)
; oligos_8nt_mkv5_m36 versus MA0513.1 (SMAD2::SMAD3::SMAD4); m=2/2; ncol2=13; w=11; offset=-2; strand=D; shift=0; score=0.552693; ctGTCTskCACct- ; cor=; Ncor= a 166.0 196.0 14.0 33.0 0.0 0.0 106.0 211.0 0.0 765.0 30.0 117.0 110.0 0 c 432.0 75.0 8.0 45.0 899.0 0.0 231.0 125.0 896.0 19.0 736.0 583.0 214.0 0 g 168.0 34.0 877.0 103.0 0.0 0.0 539.0 280.0 3.0 18.0 133.0 47.0 35.0 0 t 133.0 594.0 0.0 718.0 0.0 899.0 23.0 283.0 0.0 97.0 0.0 152.0 540.0 0

One-to-n matrix alignment; reference matrix: local_words_6nt_m3_shift0 ; 18 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m3_shift0 (local_words_6nt_m3local_words_6nt_m3)
; local_words_6nt_m3 (local_words_6nt_m3local_words_6nt_m3); m=0 (reference); ncol1=21; shift=0; ncol=21; mrsraCAGCTGCTGCAGCTgs ; Alignment reference a 12 10 5 21 25 1 37 0 0 3 0 0 3 2 0 28 1 3 2 4 6 c 10 8 11 4 2 36 0 1 37 0 0 33 0 2 35 1 1 30 3 9 16 g 9 15 13 11 9 0 0 36 0 1 37 2 1 33 1 4 34 1 6 17 10 t 6 4 8 1 1 0 0 0 0 33 0 2 33 0 1 4 1 3 26 7 5

MA1485.1_rc_shift1 (FERD3L_rc)
; local_words_6nt_m3 versus MA1485.1_rc (FERD3L_rc); m=1/17; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.551493; -GTrACAGCTGkyrC------ ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0 0 0

MA0832.1_rc_shift1 (Tcf21_rc)
; local_words_6nt_m3 versus MA0832.1_rc (Tcf21_rc); m=2/17; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.539602; -ryAACAGCTGTTry------ ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0 0 0

MA0500.2_rc_shift2 (MYOG_rc)
; local_words_6nt_m3 versus MA0500.2_rc (MYOG_rc); m=3/17; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.504481; --sarCAGCTGyts------- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0 0 0

MA0499.2_rc_shift1 (MYOD1_rc)
; local_words_6nt_m3 versus MA0499.2_rc (MYOD1_rc); m=4/17; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.486855; -rkrACAGGTGcwg------- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0 0 0 0 0

MA0521.1_shift3 (Tcf12)
; local_words_6nt_m3 versus MA0521.1 (Tcf12); m=5/17; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.469245; ---rRCAGCTGswg------- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0 0 0 0

MA1641.1_shift2 (MYF5)
; local_words_6nt_m3 versus MA1641.1 (MYF5); m=6/17; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.466535; --gvaCAGCTGtbc------- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; local_words_6nt_m3 versus MA1619.1 (Ptf1a(var.2)); m=7/17; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.464716; --rmaCAGCTGtky------- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0 0 0

MA0816.1_shift3 (Ascl2)
; local_words_6nt_m3 versus MA0816.1 (Ascl2); m=8/17; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.453385; ---arCAGCTGyy-------- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; local_words_6nt_m3 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=9/17; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.42694; ---rrCAGCTGbt-------- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0 0 0 0

MA0091.1_shift1 (TAL1::TCF3)
; local_words_6nt_m3 versus MA0091.1 (TAL1::TCF3); m=10/17; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.420844; -mgAmCAKMTGkT-------- ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0 0 0 0 0

MA0665.1_shift3 (MSC)
; local_words_6nt_m3 versus MA0665.1 (MSC); m=11/17; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.418751; ---AACAGCTGTT-------- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; local_words_6nt_m3 versus MA1100.2_rc (ASCL1_rc); m=12/17; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.417736; ---rgCAGCTGyy-------- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0 0 0

MA0691.1_shift3 (TFAP4)
; local_words_6nt_m3 versus MA0691.1 (TFAP4); m=13/17; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.415342; ---AwCAGCTGwT-------- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0 0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; local_words_6nt_m3 versus MA1467.1_rc (ATOH1(var.2)_rc); m=14/17; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.41343; ---RACAGCTGTT-------- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; local_words_6nt_m3 versus MA1635.1 (BHLHE22(var.2)); m=15/17; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.411355; ---csCAGCTGsg-------- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0 0 0 0

MA1655.1_shift0 (ZNF341)
; local_words_6nt_m3 versus MA1655.1 (ZNF341); m=16/17; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.411248; grGAACAGCcas--------- ; cor=; Ncor= a 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 0 0 0 0 0 0 0 c 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 0 0 0 0 0 0 0 g 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 0 0 0 0 0 0 0 t 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0 0 0 0 0 0 0 0

MA0048.2_shift3 (NHLH1)
; local_words_6nt_m3 versus MA0048.2 (NHLH1); m=17/17; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.405058; ---cGCAGCTGCk-------- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_6nt_m9_shift0 ; 18 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m9_shift0 (local_words_6nt_m9local_words_6nt_m9)
; local_words_6nt_m9 (local_words_6nt_m9local_words_6nt_m9); m=0 (reference); ncol1=21; shift=0; ncol=21; ssAGCTGCAGCAGCTGyysyb ; Alignment reference a 4 6 25 2 1 4 1 0 31 1 0 31 0 0 0 0 1 1 8 4 6 c 10 17 6 0 32 4 1 31 1 2 35 1 0 34 0 0 9 10 13 15 9 g 15 9 2 30 1 1 33 2 0 32 0 0 35 1 0 34 2 4 9 6 9 t 6 3 2 3 1 26 0 2 3 0 0 3 0 0 35 1 23 20 5 10 11

MA1485.1_shift6 (FERD3L)
; local_words_6nt_m9 versus MA1485.1 (FERD3L); m=1/17; ncol2=14; w=14; offset=6; strand=D; shift=6; score=0.55035; ------GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0832.1_shift6 (Tcf21)
; local_words_6nt_m9 versus MA0832.1 (Tcf21); m=2/17; ncol2=14; w=14; offset=6; strand=D; shift=6; score=0.534128; ------ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 0 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 0 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 0 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0

MA0500.2_shift7 (MYOG)
; local_words_6nt_m9 versus MA0500.2 (MYOG); m=3/17; ncol2=12; w=12; offset=7; strand=D; shift=7; score=0.504276; -------sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 0 0 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 0 0 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 0 0 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA0499.2_shift7 (MYOD1)
; local_words_6nt_m9 versus MA0499.2 (MYOD1); m=4/17; ncol2=13; w=13; offset=7; strand=D; shift=7; score=0.485893; -------cwgCACCTGTymy- ; cor=; Ncor= a 0 0 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0521.1_rc_shift7 (Tcf12_rc)
; local_words_6nt_m9 versus MA0521.1_rc (Tcf12_rc); m=5/17; ncol2=11; w=11; offset=7; strand=R; shift=7; score=0.468561; -------cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 0 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 0 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 0 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1641.1_rc_shift7 (MYF5_rc)
; local_words_6nt_m9 versus MA1641.1_rc (MYF5_rc); m=6/17; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.463762; -------gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA1619.1_rc_shift7 (Ptf1a(var.2)_rc)
; local_words_6nt_m9 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/17; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.462383; -------rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA0816.1_rc_shift8 (Ascl2_rc)
; local_words_6nt_m9 versus MA0816.1_rc (Ascl2_rc); m=8/17; ncol2=10; w=10; offset=8; strand=R; shift=8; score=0.453344; --------rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA1472.1_shift8 (BHLHA15(var.2))
; local_words_6nt_m9 versus MA1472.1 (BHLHA15(var.2)); m=9/17; ncol2=10; w=10; offset=8; strand=D; shift=8; score=0.425315; --------avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA1100.2_shift8 (ASCL1)
; local_words_6nt_m9 versus MA1100.2 (ASCL1); m=10/17; ncol2=10; w=10; offset=8; strand=D; shift=8; score=0.418053; --------rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0091.1_rc_shift8 (TAL1::TCF3_rc)
; local_words_6nt_m9 versus MA0091.1_rc (TAL1::TCF3_rc); m=11/17; ncol2=12; w=12; offset=8; strand=R; shift=8; score=0.41779; --------AmCAKMTGkTck- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 0 c 0 0 0 0 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 0 g 0 0 0 0 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 0 t 0 0 0 0 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0 0

MA0665.1_rc_shift8 (MSC_rc)
; local_words_6nt_m9 versus MA0665.1_rc (MSC_rc); m=12/17; ncol2=10; w=10; offset=8; strand=R; shift=8; score=0.415173; --------AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA0691.1_rc_shift8 (TFAP4_rc)
; local_words_6nt_m9 versus MA0691.1_rc (TFAP4_rc); m=13/17; ncol2=10; w=10; offset=8; strand=R; shift=8; score=0.413067; --------AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 0 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 0 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 0 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA1655.1_rc_shift9 (ZNF341_rc)
; local_words_6nt_m9 versus MA1655.1_rc (ZNF341_rc); m=14/17; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.412025; ---------stgGCTGTTCyc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 3536.0 4320.0 2411.0 228.0 229.0 234.0 581.0 241.0 186.0 1442.0 2599.0 4408.0 c 0 0 0 0 0 0 0 0 0 5691.0 4672.0 2289.0 270.0 17972.0 468.0 1033.0 576.0 513.0 13739.0 8832.0 5798.0 g 0 0 0 0 0 0 0 0 0 5745.0 4431.0 10946.0 18003.0 359.0 399.0 16813.0 211.0 955.0 2043.0 2180.0 4256.0 t 0 0 0 0 0 0 0 0 0 3756.0 5305.0 3082.0 227.0 168.0 17627.0 301.0 17700.0 17074.0 1504.0 5117.0 4266.0

MA1635.1_rc_shift8 (BHLHE22(var.2)_rc)
; local_words_6nt_m9 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=15/17; ncol2=10; w=10; offset=8; strand=R; shift=8; score=0.411265; --------csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA1467.1_shift8 (ATOH1(var.2))
; local_words_6nt_m9 versus MA1467.1 (ATOH1(var.2)); m=16/17; ncol2=10; w=10; offset=8; strand=D; shift=8; score=0.409757; --------AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA0048.2_rc_shift8 (NHLH1_rc)
; local_words_6nt_m9 versus MA0048.2_rc (NHLH1_rc); m=17/17; ncol2=10; w=10; offset=8; strand=R; shift=8; score=0.406673; --------mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_6nt_m16_shift0 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m16_shift0 (local_words_6nt_m16local_words_6nt_m16)
; local_words_6nt_m16 (local_words_6nt_m16local_words_6nt_m16); m=0 (reference); ncol1=20; shift=0; ncol=20; scrsCAGCTGCTGCAGCTgc ; Alignment reference a 17 11 32 12 1 93 4 0 7 0 0 12 5 2 79 2 0 2 10 15 c 29 44 24 48 98 3 2 101 1 1 91 6 8 97 8 4 96 9 23 51 g 41 24 27 36 3 2 95 0 2 101 5 0 86 1 5 95 3 7 60 16 t 15 23 19 6 0 4 1 1 92 0 6 84 3 2 10 1 3 84 9 20

MA1485.1_rc_shift0 (FERD3L_rc)
; local_words_6nt_m16 versus MA1485.1_rc (FERD3L_rc); m=1/19; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.549095; GTrACAGCTGkyrC------ ; cor=; Ncor= a 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 0 0 c 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 0 0 g 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 0 0 t 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0 0 0

MA0500.2_shift1 (MYOG)
; local_words_6nt_m16 versus MA0500.2 (MYOG); m=2/19; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.53252; -sarCAGCTGyts------- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0 0

MA0832.1_rc_shift0 (Tcf21_rc)
; local_words_6nt_m16 versus MA0832.1_rc (Tcf21_rc); m=3/19; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.50957; ryAACAGCTGTTry------ ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 0 0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 0 0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 0 0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; local_words_6nt_m16 versus MA0521.1_rc (Tcf12_rc); m=4/19; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.487532; -cwsCAGCTGYy-------- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0 0

MA1619.1_shift1 (Ptf1a(var.2))
; local_words_6nt_m16 versus MA1619.1 (Ptf1a(var.2)); m=5/19; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.471069; -rmaCAGCTGtky------- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0 0 0

MA1631.1_shift1 (ASCL1(var.2))
; local_words_6nt_m16 versus MA1631.1 (ASCL1(var.2)); m=6/19; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.470996; -cdgCACCTGCysc------ ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 0 0 0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 0 0 0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 0 0 0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0 0 0 0

MA0816.1_shift2 (Ascl2)
; local_words_6nt_m16 versus MA0816.1 (Ascl2); m=7/19; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.466602; --arCAGCTGyy-------- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0 0 0

MA0830.2_rc_shift0 (TCF4_rc)
; local_words_6nt_m16 versus MA0830.2_rc (TCF4_rc); m=8/19; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.465884; ssggCAGGTGccg------- ; cor=; Ncor= a 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 0 0 0 0 c 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 0 0 0 0 g 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 0 0 0 0 t 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0 0 0 0 0

MA1641.1_shift1 (MYF5)
; local_words_6nt_m16 versus MA1641.1 (MYF5); m=9/19; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.464878; -gvaCAGCTGtbc------- ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0 0

MA0499.2_rc_shift0 (MYOD1_rc)
; local_words_6nt_m16 versus MA0499.2_rc (MYOD1_rc); m=10/19; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.458522; rkrACAGGTGcwg------- ; cor=; Ncor= a 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 0 0 0 0 c 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 0 0 0 0 g 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 0 0 0 0 t 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0 0 0 0 0

MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; local_words_6nt_m16 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=11/19; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.450389; --csCAGCTGsg-------- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0 0 0

MA1100.2_rc_shift2 (ASCL1_rc)
; local_words_6nt_m16 versus MA1100.2_rc (ASCL1_rc); m=12/19; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.449372; --rgCAGCTGyy-------- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0 0 0

MA0048.2_shift2 (NHLH1)
; local_words_6nt_m16 versus MA0048.2 (NHLH1); m=13/19; ncol2=10; w=10; offset=2; strand=D; shift=2; score= 0.4428; --cGCAGCTGCk-------- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0 0 0 0

MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)
; local_words_6nt_m16 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=14/19; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.438635; --rrCAGCTGbt-------- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0 0 0 0

MA0091.1_shift0 (TAL1::TCF3)
; local_words_6nt_m16 versus MA0091.1 (TAL1::TCF3); m=15/19; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.420098; mgAmCAKMTGkT-------- ; cor=; Ncor= a 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 0 0 0 0 c 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 0 0 0 0 g 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 0 0 0 0 t 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0 0 0 0 0

MA1648.1_shift2 (TCF12(var.2))
; local_words_6nt_m16 versus MA1648.1 (TCF12(var.2)); m=16/19; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.412664; --ssCACCTGCys------- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 0 0 0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 0 0 0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 0 0 0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0 0 0 0 0

MA0691.1_rc_shift2 (TFAP4_rc)
; local_words_6nt_m16 versus MA0691.1_rc (TFAP4_rc); m=17/19; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.409898; --AwCAGCTGwT-------- ; cor=; Ncor= a 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 0 0 0 0 c 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 0 0 0 0 g 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 0 0 0 0 t 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0 0 0 0 0

MA0522.3_shift2 (TCF3)
; local_words_6nt_m16 versus MA0522.3 (TCF3); m=18/19; ncol2=11; w=11; offset=2; strand=D; shift=2; score= 0.4053; --svCACCTGCss------- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 0 0 0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 0 0 0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 0 0 0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0 0 0 0 0

MA1467.1_rc_shift2 (ATOH1(var.2)_rc)
; local_words_6nt_m16 versus MA1467.1_rc (ATOH1(var.2)_rc); m=19/19; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.402525; --RACAGCTGTT-------- ; cor=; Ncor= a 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 0 0 0 c 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 0 0 0 g 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 0 0 0 t 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_6nt_m4_shift0 ; 19 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m4_shift0 (local_words_6nt_m4local_words_6nt_m4)
; local_words_6nt_m4 (local_words_6nt_m4local_words_6nt_m4); m=0 (reference); ncol1=20; shift=0; ncol=20; gsAGCTGCAGCAGCTGscrs ; Alignment reference a 18 9 83 4 1 9 2 3 76 7 0 94 1 2 2 0 6 19 25 15 c 16 52 7 1 90 7 1 84 4 6 99 2 0 91 4 4 37 44 22 34 g 50 25 8 94 6 8 94 7 8 86 0 1 98 2 3 94 41 21 42 34 t 15 13 1 0 2 75 2 5 11 0 0 2 0 4 90 1 15 15 10 16

MA1485.1_shift6 (FERD3L)
; local_words_6nt_m4 versus MA1485.1 (FERD3L); m=1/18; ncol2=14; w=14; offset=6; strand=D; shift=6; score=0.548594; ------GyrmCAGCTGTyAC ; cor=; Ncor= a 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 c 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 g 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 t 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0

MA0500.2_rc_shift7 (MYOG_rc)
; local_words_6nt_m4 versus MA0500.2_rc (MYOG_rc); m=2/18; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.535452; -------sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA0832.1_shift6 (Tcf21)
; local_words_6nt_m4 versus MA0832.1 (Tcf21); m=3/18; ncol2=14; w=14; offset=6; strand=D; shift=6; score=0.50099; ------ryAACAGCTGTTry ; cor=; Ncor= a 0 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0

MA0521.1_shift8 (Tcf12)
; local_words_6nt_m4 versus MA0521.1 (Tcf12); m=4/18; ncol2=11; w=11; offset=8; strand=D; shift=8; score=0.490187; --------rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA1619.1_rc_shift7 (Ptf1a(var.2)_rc)
; local_words_6nt_m4 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=5/18; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.478008; -------rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 c 0 0 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 g 0 0 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 t 0 0 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0

MA0830.2_shift7 (TCF4)
; local_words_6nt_m4 versus MA0830.2 (TCF4); m=6/18; ncol2=13; w=13; offset=7; strand=D; shift=7; score=0.476233; -------cggCACCTGccss ; cor=; Ncor= a 0 0 0 0 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 c 0 0 0 0 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 g 0 0 0 0 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 t 0 0 0 0 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0

MA1631.1_rc_shift6 (ASCL1(var.2)_rc)
; local_words_6nt_m4 versus MA1631.1_rc (ASCL1(var.2)_rc); m=7/18; ncol2=13; w=13; offset=6; strand=R; shift=6; score=0.475784; ------gsrGCAGGTGchg- ; cor=; Ncor= a 0 0 0 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 c 0 0 0 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 g 0 0 0 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 t 0 0 0 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0

MA1641.1_rc_shift7 (MYF5_rc)
; local_words_6nt_m4 versus MA1641.1_rc (MYF5_rc); m=8/18; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.472215; -------gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 0 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 0 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 0 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0

MA0499.2_shift7 (MYOD1)
; local_words_6nt_m4 versus MA0499.2 (MYOD1); m=9/18; ncol2=13; w=13; offset=7; strand=D; shift=7; score=0.472131; -------cwgCACCTGTymy ; cor=; Ncor= a 0 0 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 c 0 0 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 g 0 0 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 t 0 0 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0

MA0816.1_rc_shift8 (Ascl2_rc)
; local_words_6nt_m4 versus MA0816.1_rc (Ascl2_rc); m=10/18; ncol2=10; w=10; offset=8; strand=R; shift=8; score=0.462398; --------rrCAGCTGyt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 c 0 0 0 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 g 0 0 0 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 t 0 0 0 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0

MA1100.2_shift8 (ASCL1)
; local_words_6nt_m4 versus MA1100.2 (ASCL1); m=11/18; ncol2=10; w=10; offset=8; strand=D; shift=8; score=0.456872; --------rrCAGCTGcy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA1635.1_shift8 (BHLHE22(var.2))
; local_words_6nt_m4 versus MA1635.1 (BHLHE22(var.2)); m=12/18; ncol2=10; w=10; offset=8; strand=D; shift=8; score=0.456491; --------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA0048.2_rc_shift8 (NHLH1_rc)
; local_words_6nt_m4 versus MA0048.2_rc (NHLH1_rc); m=13/18; ncol2=10; w=10; offset=8; strand=R; shift=8; score=0.444478; --------mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA1472.1_shift8 (BHLHA15(var.2))
; local_words_6nt_m4 versus MA1472.1 (BHLHA15(var.2)); m=14/18; ncol2=10; w=10; offset=8; strand=D; shift=8; score=0.441519; --------avCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 0 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 0 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 0 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0

MA1648.1_rc_shift7 (TCF12(var.2)_rc)
; local_words_6nt_m4 versus MA1648.1_rc (TCF12(var.2)_rc); m=15/18; ncol2=11; w=11; offset=7; strand=R; shift=7; score=0.417265; -------srGCAGGTGss-- ; cor=; Ncor= a 0 0 0 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 c 0 0 0 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 g 0 0 0 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 t 0 0 0 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0

MA1467.1_shift8 (ATOH1(var.2))
; local_words_6nt_m4 versus MA1467.1 (ATOH1(var.2)); m=16/18; ncol2=10; w=10; offset=8; strand=D; shift=8; score=0.415056; --------AACAGCTGTY-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 0 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 0 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0

MA0522.3_rc_shift7 (TCF3_rc)
; local_words_6nt_m4 versus MA0522.3_rc (TCF3_rc); m=17/18; ncol2=11; w=11; offset=7; strand=R; shift=7; score=0.410085; -------ssGCAGGTGbs-- ; cor=; Ncor= a 0 0 0 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 c 0 0 0 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 g 0 0 0 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 t 0 0 0 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0

MA0691.1_shift8 (TFAP4)
; local_words_6nt_m4 versus MA0691.1 (TFAP4); m=18/18; ncol2=10; w=10; offset=8; strand=D; shift=8; score=0.40438; --------AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

One-to-n matrix alignment; reference matrix: local_words_6nt_m14_shift0 ; 19 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m14_shift0 (local_words_6nt_m14local_words_6nt_m14)
; local_words_6nt_m14 (local_words_6nt_m14local_words_6nt_m14); m=0 (reference); ncol1=20; shift=0; ncol=20; scgsCAGCTGCTGCAGCTgc ; Alignment reference a 16 10 15 15 1 89 4 0 2 0 0 11 5 2 75 2 0 1 13 15 c 33 42 21 41 93 3 2 97 1 0 85 7 7 93 8 6 93 8 24 50 g 34 22 43 36 4 4 90 0 2 98 6 4 83 1 7 89 1 7 52 15 t 15 24 19 6 0 2 2 1 93 0 7 76 3 2 8 1 4 82 9 18

MA1485.1_rc_shift0 (FERD3L_rc)
; local_words_6nt_m14 versus MA1485.1_rc (FERD3L_rc); m=1/18; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.54827; GTrACAGCTGkyrC------ ; cor=; Ncor= a 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 0 0 c 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 0 0 g 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 0 0 t 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0 0 0

MA0500.2_shift1 (MYOG)
; local_words_6nt_m14 versus MA0500.2 (MYOG); m=2/18; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.535034; -sarCAGCTGyts------- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0 0

MA0832.1_rc_shift0 (Tcf21_rc)
; local_words_6nt_m14 versus MA0832.1_rc (Tcf21_rc); m=3/18; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.501795; ryAACAGCTGTTry------ ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 0 0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 0 0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 0 0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; local_words_6nt_m14 versus MA0521.1_rc (Tcf12_rc); m=4/18; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.48983; -cwsCAGCTGYy-------- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0 0

MA1619.1_shift1 (Ptf1a(var.2))
; local_words_6nt_m14 versus MA1619.1 (Ptf1a(var.2)); m=5/18; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.477917; -rmaCAGCTGtky------- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0 0 0

MA0830.2_rc_shift0 (TCF4_rc)
; local_words_6nt_m14 versus MA0830.2_rc (TCF4_rc); m=6/18; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.475277; ssggCAGGTGccg------- ; cor=; Ncor= a 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 0 0 0 0 c 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 0 0 0 0 g 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 0 0 0 0 t 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0 0 0 0 0

MA1631.1_shift1 (ASCL1(var.2))
; local_words_6nt_m14 versus MA1631.1 (ASCL1(var.2)); m=7/18; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.474985; -cdgCACCTGCysc------ ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 0 0 0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 0 0 0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 0 0 0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0 0 0 0

MA1641.1_shift1 (MYF5)
; local_words_6nt_m14 versus MA1641.1 (MYF5); m=8/18; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.472058; -gvaCAGCTGtbc------- ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0 0

MA0499.2_rc_shift0 (MYOD1_rc)
; local_words_6nt_m14 versus MA0499.2_rc (MYOD1_rc); m=9/18; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.471661; rkrACAGGTGcwg------- ; cor=; Ncor= a 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 0 0 0 0 c 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 0 0 0 0 g 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 0 0 0 0 t 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0 0 0 0 0

MA0816.1_shift2 (Ascl2)
; local_words_6nt_m14 versus MA0816.1 (Ascl2); m=10/18; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.462064; --arCAGCTGyy-------- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0 0 0

MA1100.2_rc_shift2 (ASCL1_rc)
; local_words_6nt_m14 versus MA1100.2_rc (ASCL1_rc); m=11/18; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.456058; --rgCAGCTGyy-------- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0 0 0

MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; local_words_6nt_m14 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=12/18; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.456056; --csCAGCTGsg-------- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0 0 0

MA0048.2_shift2 (NHLH1)
; local_words_6nt_m14 versus MA0048.2 (NHLH1); m=13/18; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.443983; --cGCAGCTGCk-------- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0 0 0 0

MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)
; local_words_6nt_m14 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=14/18; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.441387; --rrCAGCTGbt-------- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0 0 0 0

MA1648.1_shift2 (TCF12(var.2))
; local_words_6nt_m14 versus MA1648.1 (TCF12(var.2)); m=15/18; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.416936; --ssCACCTGCys------- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 0 0 0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 0 0 0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 0 0 0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0 0 0 0 0

MA1467.1_rc_shift2 (ATOH1(var.2)_rc)
; local_words_6nt_m14 versus MA1467.1_rc (ATOH1(var.2)_rc); m=16/18; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.414791; --RACAGCTGTT-------- ; cor=; Ncor= a 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 0 0 0 c 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 0 0 0 g 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 0 0 0 t 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0 0 0 0

MA0522.3_shift2 (TCF3)
; local_words_6nt_m14 versus MA0522.3 (TCF3); m=17/18; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.409747; --svCACCTGCss------- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 0 0 0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 0 0 0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 0 0 0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0 0 0 0 0

MA0691.1_rc_shift2 (TFAP4_rc)
; local_words_6nt_m14 versus MA0691.1_rc (TFAP4_rc); m=18/18; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.404832; --AwCAGCTGwT-------- ; cor=; Ncor= a 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 0 0 0 0 c 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 0 0 0 0 g 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 0 0 0 0 t 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m29_shift4 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m29_shift4 (oligos_8nt_mkv5_m29oligos_8nt_mkv5_m29)
; oligos_8nt_mkv5_m29 (oligos_8nt_mkv5_m29oligos_8nt_mkv5_m29); m=0 (reference); ncol1=12; shift=4; ncol=16; ----ssCGCCtCGCss ; Alignment reference a 0 0 0 0 21 25 4 2 4 2 8 3 4 1 23 27 c 0 0 0 0 112 127 240 7 236 244 58 247 22 241 129 116 g 0 0 0 0 84 73 9 245 15 9 43 5 229 12 79 72 t 0 0 0 0 41 33 5 4 3 3 149 3 3 4 27 43

MA1515.1_shift6 (KLF2)
; oligos_8nt_mkv5_m29 versus MA1515.1 (KLF2); m=1/9; ncol2=11; w=10; offset=2; strand=D; shift=6; score=0.546736; ------srCCmCrCCC ; cor=; Ncor= a 0 0 0 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 c 0 0 0 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 g 0 0 0 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 t 0 0 0 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0

MA0599.1_shift7 (KLF5)
; oligos_8nt_mkv5_m29 versus MA0599.1 (KLF5); m=2/9; ncol2=10; w=9; offset=3; strand=D; shift=7; score=0.529972; -------gCCMCrCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 c 0 0 0 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 g 0 0 0 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0

MA1513.1_shift7 (KLF15)
; oligos_8nt_mkv5_m29 versus MA1513.1 (KLF15); m=3/9; ncol2=11; w=9; offset=3; strand=D; shift=7; score=0.503314; -------scCCCGCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 c 0 0 0 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 g 0 0 0 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 t 0 0 0 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0

MA0746.2_shift6 (SP3)
; oligos_8nt_mkv5_m29 versus MA0746.2 (SP3); m=4/9; ncol2=13; w=10; offset=2; strand=D; shift=6; score=0.502526; ------srCCACGCCC ; cor=; Ncor= a 0 0 0 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 c 0 0 0 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 g 0 0 0 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 t 0 0 0 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0

MA0741.1_shift7 (KLF16)
; oligos_8nt_mkv5_m29 versus MA0741.1 (KLF16); m=5/9; ncol2=11; w=9; offset=3; strand=D; shift=7; score=0.480676; -------gmCMCgCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 c 0 0 0 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 g 0 0 0 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 t 0 0 0 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0

MA1512.1_shift7 (KLF11)
; oligos_8nt_mkv5_m29 versus MA1512.1 (KLF11); m=6/9; ncol2=11; w=9; offset=3; strand=D; shift=7; score=0.46764; -------gcCACGCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 c 0 0 0 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 g 0 0 0 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 t 0 0 0 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0

MA1564.1_shift7 (SP9)
; oligos_8nt_mkv5_m29 versus MA1564.1 (SP9); m=7/9; ncol2=12; w=9; offset=3; strand=D; shift=7; score=0.455627; -------rcCmCGCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 c 0 0 0 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 g 0 0 0 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 t 0 0 0 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0

MA0747.1_shift7 (SP8)
; oligos_8nt_mkv5_m29 versus MA0747.1 (SP8); m=8/9; ncol2=12; w=9; offset=3; strand=D; shift=7; score=0.437124; -------rmCACgCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 c 0 0 0 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 g 0 0 0 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 t 0 0 0 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0

MA0471.2_rc_shift0 (E2F6_rc)
; oligos_8nt_mkv5_m29 versus MA0471.2_rc (E2F6_rc); m=9/9; ncol2=13; w=9; offset=-4; strand=R; shift=0; score=0.421354; syTTCCCGCCyyc--- ; cor=; Ncor= a 5600.0 4163.0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 6897.0 5665.0 5369.0 0 0 0 c 11405.0 12530.0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 11562.0 11649.0 12358.0 0 0 0 g 8477.0 7410.0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 5102.0 7405.0 8075.0 0 0 0 t 7616.0 8995.0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 9537.0 8379.0 7296.0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m5_shift0 ; 15 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m5_shift0 (dyads_m5dyads_m5)
; dyads_m5 (dyads_m5dyads_m5); m=0 (reference); ncol1=18; shift=0; ncol=18; sstGACAGCAGCTGGgss ; Alignment reference a 20 20 18 4 75 3 82 7 1 77 1 1 1 0 6 10 22 13 c 23 29 7 5 4 80 2 0 87 0 2 85 0 1 14 14 25 34 g 32 29 17 80 9 6 5 80 1 1 86 2 0 88 65 59 24 25 t 14 11 47 0 1 0 0 2 0 11 0 1 88 0 4 6 18 17

MA0500.2_rc_shift5 (MYOG_rc)
; dyads_m5 versus MA0500.2_rc (MYOG_rc); m=1/14; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.54554; -----sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA0521.1_shift6 (Tcf12)
; dyads_m5 versus MA0521.1 (Tcf12); m=2/14; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.516183; ------rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA1619.1_rc_shift5 (Ptf1a(var.2)_rc)
; dyads_m5 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=3/14; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.501048; -----rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 c 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 g 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 t 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0

MA1641.1_rc_shift5 (MYF5_rc)
; dyads_m5 versus MA1641.1_rc (MYF5_rc); m=4/14; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.48892; -----gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0

MA0048.2_rc_shift6 (NHLH1_rc)
; dyads_m5 versus MA0048.2_rc (NHLH1_rc); m=5/14; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.478634; ------mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA1635.1_shift6 (BHLHE22(var.2))
; dyads_m5 versus MA1635.1 (BHLHE22(var.2)); m=6/14; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.475265; ------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA0816.1_rc_shift6 (Ascl2_rc)
; dyads_m5 versus MA0816.1_rc (Ascl2_rc); m=7/14; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.470717; ------rrCAGCTGyt-- ; cor=; Ncor= a 0 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 c 0 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 g 0 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 t 0 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0

MA1100.2_shift6 (ASCL1)
; dyads_m5 versus MA1100.2 (ASCL1); m=8/14; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.462121; ------rrCAGCTGcy-- ; cor=; Ncor= a 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA1472.1_shift6 (BHLHA15(var.2))
; dyads_m5 versus MA1472.1 (BHLHA15(var.2)); m=9/14; ncol2=10; w=10; offset=6; strand=D; shift=6; score= 0.4587; ------avCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0

MA1648.1_rc_shift5 (TCF12(var.2)_rc)
; dyads_m5 versus MA1648.1_rc (TCF12(var.2)_rc); m=10/14; ncol2=11; w=11; offset=5; strand=R; shift=5; score=0.438307; -----srGCAGGTGss-- ; cor=; Ncor= a 0 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 c 0 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 g 0 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 t 0 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0

MA0522.3_rc_shift5 (TCF3_rc)
; dyads_m5 versus MA0522.3_rc (TCF3_rc); m=11/14; ncol2=11; w=11; offset=5; strand=R; shift=5; score=0.431924; -----ssGCAGGTGbs-- ; cor=; Ncor= a 0 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 c 0 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 g 0 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 t 0 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0

MA0691.1_shift6 (TFAP4)
; dyads_m5 versus MA0691.1 (TFAP4); m=12/14; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.423608; ------AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; dyads_m5 versus MA1467.1_rc (ATOH1(var.2)_rc); m=13/14; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.411822; ---RACAGCTGTT----- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0

MA0665.1_rc_shift6 (MSC_rc)
; dyads_m5 versus MA0665.1_rc (MSC_rc); m=14/14; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.405414; ------AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0

One-to-n matrix alignment; reference matrix: local_words_6nt_m8_shift0 ; 14 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m8_shift0 (local_words_6nt_m8local_words_6nt_m8)
; local_words_6nt_m8 (local_words_6nt_m8local_words_6nt_m8); m=0 (reference); ncol1=21; shift=0; ncol=21; tscCACAGCTGCyrCAGCTgc ; Alignment reference a 13 7 7 3 70 1 80 0 0 8 0 1 4 23 1 64 0 2 1 13 13 c 12 25 50 62 3 81 2 2 84 2 0 78 25 5 76 3 4 78 7 19 48 g 14 43 11 15 8 2 1 81 0 1 84 0 1 53 1 8 77 1 4 45 9 t 45 9 16 4 3 0 1 1 0 73 0 5 54 3 6 9 3 3 72 7 14

MA1485.1_rc_shift1 (FERD3L_rc)
; local_words_6nt_m8 versus MA1485.1_rc (FERD3L_rc); m=1/13; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.545349; -GTrACAGCTGkyrC------ ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0 0 0

MA0832.1_shift1 (Tcf21)
; local_words_6nt_m8 versus MA0832.1 (Tcf21); m=2/13; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.493316; -ryAACAGCTGTTry------ ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 0 0 0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 0 0 0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 0 0 0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0 0 0 0 0

MA0500.2_shift2 (MYOG)
; local_words_6nt_m8 versus MA0500.2 (MYOG); m=3/13; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.48726; --sarCAGCTGyts------- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0 0

MA0499.2_rc_shift1 (MYOD1_rc)
; local_words_6nt_m8 versus MA0499.2_rc (MYOD1_rc); m=4/13; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.478241; -rkrACAGGTGcwg------- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0 0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; local_words_6nt_m8 versus MA1619.1 (Ptf1a(var.2)); m=5/13; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.474223; --rmaCAGCTGtky------- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0 0 0

MA1641.1_shift2 (MYF5)
; local_words_6nt_m8 versus MA1641.1 (MYF5); m=6/13; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.470617; --gvaCAGCTGtbc------- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0 0

MA0521.1_shift3 (Tcf12)
; local_words_6nt_m8 versus MA0521.1 (Tcf12); m=7/13; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.452695; ---rRCAGCTGswg------- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0 0 0 0

MA1631.1_shift2 (ASCL1(var.2))
; local_words_6nt_m8 versus MA1631.1 (ASCL1(var.2)); m=8/13; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.434757; --cdgCACCTGCysc------ ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 0 0 0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 0 0 0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 0 0 0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0 0 0 0

MA0048.2_shift3 (NHLH1)
; local_words_6nt_m8 versus MA0048.2 (NHLH1); m=9/13; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.415885; ---cGCAGCTGCk-------- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0 0 0 0

MA0816.1_shift3 (Ascl2)
; local_words_6nt_m8 versus MA0816.1 (Ascl2); m=10/13; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.414733; ---arCAGCTGyy-------- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; local_words_6nt_m8 versus MA1635.1 (BHLHE22(var.2)); m=11/13; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.408892; ---csCAGCTGsg-------- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; local_words_6nt_m8 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=12/13; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.407501; ---rrCAGCTGbt-------- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; local_words_6nt_m8 versus MA1100.2_rc (ASCL1_rc); m=13/13; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.404976; ---rgCAGCTGyy-------- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m1_shift0 ; 18 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m1_shift0 (dyads_m1dyads_m1)
; dyads_m1 (dyads_m1dyads_m1); m=0 (reference); ncol1=19; shift=0; ncol=19; ssTGACAGCTGCTGTCass ; Alignment reference a 17 12 5 1 56 0 71 0 1 6 0 2 5 1 2 4 39 12 14 c 19 21 5 3 6 72 0 2 71 0 0 62 2 8 4 58 10 18 22 g 21 27 7 63 8 0 0 70 0 0 71 4 4 62 8 8 9 26 23 t 15 12 55 5 2 0 1 0 0 66 1 4 61 1 58 2 14 16 13

MA0499.2_rc_shift1 (MYOD1_rc)
; dyads_m1 versus MA0499.2_rc (MYOD1_rc); m=1/17; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.544434; -rkrACAGGTGcwg----- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0 0 0

MA0832.1_shift1 (Tcf21)
; dyads_m1 versus MA0832.1 (Tcf21); m=2/17; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.544322; -ryAACAGCTGTTry---- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0 0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; dyads_m1 versus MA1485.1_rc (FERD3L_rc); m=3/17; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.535295; -GTrACAGCTGkyrC---- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0

MA0500.2_shift2 (MYOG)
; dyads_m1 versus MA0500.2 (MYOG); m=4/17; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.517681; --sarCAGCTGyts----- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0

MA0521.1_shift3 (Tcf12)
; dyads_m1 versus MA0521.1 (Tcf12); m=5/17; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.504953; ---rRCAGCTGswg----- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0 0

MA1641.1_shift2 (MYF5)
; dyads_m1 versus MA1641.1 (MYF5); m=6/17; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.494255; --gvaCAGCTGtbc----- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; dyads_m1 versus MA1619.1 (Ptf1a(var.2)); m=7/17; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.489801; --rmaCAGCTGtky----- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; dyads_m1 versus MA1467.1_rc (ATOH1(var.2)_rc); m=8/17; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.467994; ---RACAGCTGTT------ ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0 0

MA0816.1_rc_shift3 (Ascl2_rc)
; dyads_m1 versus MA0816.1_rc (Ascl2_rc); m=9/17; ncol2=10; w=10; offset=3; strand=R; shift=3; score= 0.4581; ---rrCAGCTGyt------ ; cor=; Ncor= a 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 0 0 c 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 0 0 g 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 0 0 t 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; dyads_m1 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=10/17; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.453231; ---rrCAGCTGbt------ ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; dyads_m1 versus MA1100.2_rc (ASCL1_rc); m=11/17; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.447821; ---rgCAGCTGyy------ ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; dyads_m1 versus MA1635.1 (BHLHE22(var.2)); m=12/17; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.441463; ---csCAGCTGsg------ ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0 0

MA0665.1_shift3 (MSC)
; dyads_m1 versus MA0665.1 (MSC); m=13/17; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.428711; ---AACAGCTGTT------ ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0 0 0

MA0691.1_rc_shift3 (TFAP4_rc)
; dyads_m1 versus MA0691.1_rc (TFAP4_rc); m=14/17; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.415901; ---AwCAGCTGwT------ ; cor=; Ncor= a 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 0 0 c 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 0 0 g 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 0 0 t 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0 0 0

MA0048.2_shift3 (NHLH1)
; dyads_m1 versus MA0048.2 (NHLH1); m=15/17; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.413107; ---cGCAGCTGCk------ ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0 0

MA1648.1_shift3 (TCF12(var.2))
; dyads_m1 versus MA1648.1 (TCF12(var.2)); m=16/17; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.405698; ---ssCACCTGCys----- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; dyads_m1 versus MA0667.1_rc (MYF6_rc); m=17/17; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.403404; ---RACAGyTGTT------ ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m23_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m23_shift0 (oligos_7nt_mkv4_m23oligos_7nt_mkv4_m23)
; oligos_7nt_mkv4_m23 (oligos_7nt_mkv4_m23oligos_7nt_mkv4_m23); m=0 (reference); ncol1=12; shift=0; ncol=13; ssAGGCTGGCsg- ; Alignment reference a 21 27 147 1 0 0 0 0 4 0 34 23 0 c 60 67 8 4 1 159 8 4 0 160 47 37 0 g 56 53 4 156 160 2 14 157 156 1 43 70 0 t 24 14 2 0 0 0 139 0 1 0 37 31 0

MA0739.1_rc_shift3 (Hic1_rc)
; oligos_7nt_mkv4_m23 versus MA0739.1_rc (Hic1_rc); m=1/2; ncol2=9; w=9; offset=3; strand=R; shift=3; score=0.535846; ---gGtTGGCAy- ; cor=; Ncor= a 0 0 0 2692.0 1488.0 614.0 317.0 68.0 0.0 183.0 11007.0 666.0 0 c 0 0 0 1884.0 1629.0 2267.0 3.0 31.0 121.0 11007.0 73.0 4670.0 0 g 0 0 0 4822.0 11007.0 1986.0 1999.0 11007.0 11007.0 588.0 422.0 719.0 0 t 0 0 0 1610.0 1220.0 6140.0 9008.0 88.0 50.0 950.0 62.0 6337.0 0

MA0671.1_rc_shift4 (NFIX_rc)
; oligos_7nt_mkv4_m23 versus MA0671.1_rc (NFIX_rc); m=2/2; ncol2=9; w=8; offset=4; strand=R; shift=4; score=0.452809; ----byTGGCacs ; cor=; Ncor= a 0 0 0 0 6439.0 2399.0 110.0 0.0 29.0 2539.0 32864.0 8043.0 7378.0 c 0 0 0 0 9135.0 12688.0 180.0 0.0 3257.0 32864.0 5911.0 10855.0 8725.0 g 0 0 0 0 9039.0 1356.0 2230.0 32864.0 32864.0 186.0 9695.0 6134.0 8810.0 t 0 0 0 0 8251.0 32864.0 32864.0 0.0 3.0 132.0 11279.0 7832.0 7951.0

One-to-n matrix alignment; reference matrix: local_words_6nt_m11_shift0 ; 13 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m11_shift0 (local_words_6nt_m11local_words_6nt_m11)
; local_words_6nt_m11 (local_words_6nt_m11local_words_6nt_m11); m=0 (reference); ncol1=22; shift=0; ncol=23; msCtGCtGCAGCAGCTGCTscy- ; Alignment reference a 36 17 7 27 2 6 20 4 5 98 5 0 114 3 0 3 0 1 14 13 16 22 0 c 41 39 112 15 10 114 10 11 109 11 6 135 3 1 133 1 2 123 11 60 76 50 0 g 33 59 11 18 119 8 16 118 14 7 122 0 3 130 1 3 133 4 10 50 14 30 0 t 26 21 6 76 5 8 90 3 8 20 3 1 16 2 2 129 1 8 101 13 30 34 0

MA1529.1_shift5 (NHLH2)
; local_words_6nt_m11 versus MA1529.1 (NHLH2); m=1/12; ncol2=18; w=17; offset=5; strand=D; shift=5; score=0.53475; -----ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 0 0 0 0 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 0 0 0 0 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 0 0 0 0 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 0 0 0 0 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0500.2_shift8 (MYOG)
; local_words_6nt_m11 versus MA0500.2 (MYOG); m=2/12; ncol2=12; w=12; offset=8; strand=D; shift=8; score=0.483315; --------sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 0 0 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 0 0 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 0 0 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA1485.1_shift7 (FERD3L)
; local_words_6nt_m11 versus MA1485.1 (FERD3L); m=3/12; ncol2=14; w=14; offset=7; strand=D; shift=7; score=0.477844; -------GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0832.1_shift7 (Tcf21)
; local_words_6nt_m11 versus MA0832.1 (Tcf21); m=4/12; ncol2=14; w=14; offset=7; strand=D; shift=7; score=0.452863; -------ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA1631.1_shift8 (ASCL1(var.2))
; local_words_6nt_m11 versus MA1631.1 (ASCL1(var.2)); m=5/12; ncol2=13; w=13; offset=8; strand=D; shift=8; score=0.44437; --------cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 0 0 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 0 0 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 0 0 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0816.1_shift9 (Ascl2)
; local_words_6nt_m11 versus MA0816.1 (Ascl2); m=6/12; ncol2=10; w=10; offset=9; strand=D; shift=9; score=0.432586; ---------arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA0830.2_shift8 (TCF4)
; local_words_6nt_m11 versus MA0830.2 (TCF4); m=7/12; ncol2=13; w=13; offset=8; strand=D; shift=8; score=0.431509; --------cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 0 0 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 0 0 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 0 0 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA0521.1_shift9 (Tcf12)
; local_words_6nt_m11 versus MA0521.1 (Tcf12); m=8/12; ncol2=11; w=11; offset=9; strand=D; shift=9; score=0.419977; ---------rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA0048.2_shift9 (NHLH1)
; local_words_6nt_m11 versus MA0048.2 (NHLH1); m=9/12; ncol2=10; w=10; offset=9; strand=D; shift=9; score=0.40935; ---------cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA1100.2_shift9 (ASCL1)
; local_words_6nt_m11 versus MA1100.2 (ASCL1); m=10/12; ncol2=10; w=10; offset=9; strand=D; shift=9; score=0.407168; ---------rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1619.1_shift8 (Ptf1a(var.2))
; local_words_6nt_m11 versus MA1619.1 (Ptf1a(var.2)); m=11/12; ncol2=12; w=12; offset=8; strand=D; shift=8; score=0.406152; --------rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1641.1_rc_shift8 (MYF5_rc)
; local_words_6nt_m11 versus MA1641.1_rc (MYF5_rc); m=12/12; ncol2=12; w=12; offset=8; strand=R; shift=8; score=0.40162; --------gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_6nt_m15_shift0 ; 13 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m15_shift0 (local_words_6nt_m15local_words_6nt_m15)
; local_words_6nt_m15 (local_words_6nt_m15local_words_6nt_m15); m=0 (reference); ncol1=21; shift=0; ncol=21; gsAGCtGCAGCAGCTGTCmss ; Alignment reference a 8 8 40 3 2 11 1 1 44 3 2 49 0 0 0 0 3 1 18 9 12 c 6 24 4 3 50 5 1 46 3 0 52 0 0 53 0 1 7 45 19 18 19 g 27 17 7 46 1 2 50 4 2 49 0 0 54 1 1 52 4 5 12 17 14 t 13 5 3 2 1 36 2 3 5 2 0 5 0 0 53 1 40 3 5 10 9

MA1485.1_shift6 (FERD3L)
; local_words_6nt_m15 versus MA1485.1 (FERD3L); m=1/12; ncol2=14; w=14; offset=6; strand=D; shift=6; score=0.530756; ------GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0499.2_shift7 (MYOD1)
; local_words_6nt_m15 versus MA0499.2 (MYOD1); m=2/12; ncol2=13; w=13; offset=7; strand=D; shift=7; score=0.501634; -------cwgCACCTGTymy- ; cor=; Ncor= a 0 0 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0832.1_shift6 (Tcf21)
; local_words_6nt_m15 versus MA0832.1 (Tcf21); m=3/12; ncol2=14; w=14; offset=6; strand=D; shift=6; score=0.492346; ------ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 0 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 0 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 0 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0

MA0500.2_shift7 (MYOG)
; local_words_6nt_m15 versus MA0500.2 (MYOG); m=4/12; ncol2=12; w=12; offset=7; strand=D; shift=7; score=0.484182; -------sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 0 0 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 0 0 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 0 0 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA1641.1_rc_shift7 (MYF5_rc)
; local_words_6nt_m15 versus MA1641.1_rc (MYF5_rc); m=5/12; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.459285; -------gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA0521.1_rc_shift7 (Tcf12_rc)
; local_words_6nt_m15 versus MA0521.1_rc (Tcf12_rc); m=6/12; ncol2=11; w=11; offset=7; strand=R; shift=7; score=0.458219; -------cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 0 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 0 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 0 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1619.1_rc_shift7 (Ptf1a(var.2)_rc)
; local_words_6nt_m15 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/12; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.45556; -------rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA1467.1_shift8 (ATOH1(var.2))
; local_words_6nt_m15 versus MA1467.1 (ATOH1(var.2)); m=8/12; ncol2=10; w=10; offset=8; strand=D; shift=8; score=0.420329; --------AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA0816.1_shift8 (Ascl2)
; local_words_6nt_m15 versus MA0816.1 (Ascl2); m=9/12; ncol2=10; w=10; offset=8; strand=D; shift=8; score=0.417002; --------arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA1472.1_shift8 (BHLHA15(var.2))
; local_words_6nt_m15 versus MA1472.1 (BHLHA15(var.2)); m=10/12; ncol2=10; w=10; offset=8; strand=D; shift=8; score=0.408615; --------avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA1100.2_shift8 (ASCL1)
; local_words_6nt_m15 versus MA1100.2 (ASCL1); m=11/12; ncol2=10; w=10; offset=8; strand=D; shift=8; score=0.407156; --------rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA1635.1_rc_shift8 (BHLHE22(var.2)_rc)
; local_words_6nt_m15 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=12/12; ncol2=10; w=10; offset=8; strand=R; shift=8; score=0.401307; --------csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_6nt_m17_shift0 ; 13 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m17_shift0 (local_words_6nt_m17local_words_6nt_m17)
; local_words_6nt_m17 (local_words_6nt_m17local_words_6nt_m17); m=0 (reference); ncol1=21; shift=0; ncol=21; ksbGACAGCTGCTGCaGCTsc ; Alignment reference a 10 11 5 3 41 1 56 0 0 4 0 2 5 3 2 39 2 2 3 7 13 c 13 18 20 6 4 55 0 1 58 0 0 53 2 4 53 3 1 50 6 20 30 g 18 18 15 47 10 2 2 56 0 1 56 0 5 49 1 5 53 3 3 24 8 t 17 11 18 2 3 0 0 1 0 53 2 3 46 2 2 11 2 3 46 7 7

MA1485.1_rc_shift1 (FERD3L_rc)
; local_words_6nt_m17 versus MA1485.1_rc (FERD3L_rc); m=1/12; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.529287; -GTrACAGCTGkyrC------ ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0 0 0

MA0499.2_rc_shift1 (MYOD1_rc)
; local_words_6nt_m17 versus MA0499.2_rc (MYOD1_rc); m=2/12; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.49874; -rkrACAGGTGcwg------- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0 0 0 0 0

MA0832.1_rc_shift1 (Tcf21_rc)
; local_words_6nt_m17 versus MA0832.1_rc (Tcf21_rc); m=3/12; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.493932; -ryAACAGCTGTTry------ ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0 0 0

MA0500.2_shift2 (MYOG)
; local_words_6nt_m17 versus MA0500.2 (MYOG); m=4/12; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.488191; --sarCAGCTGyts------- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0 0

MA1641.1_shift2 (MYF5)
; local_words_6nt_m17 versus MA1641.1 (MYF5); m=5/12; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.459476; --gvaCAGCTGtbc------- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0 0

MA0521.1_shift3 (Tcf12)
; local_words_6nt_m17 versus MA0521.1 (Tcf12); m=6/12; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.459173; ---rRCAGCTGswg------- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; local_words_6nt_m17 versus MA1619.1 (Ptf1a(var.2)); m=7/12; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.456925; --rmaCAGCTGtky------- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0 0 0

MA0816.1_rc_shift3 (Ascl2_rc)
; local_words_6nt_m17 versus MA0816.1_rc (Ascl2_rc); m=8/12; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.419692; ---rrCAGCTGyt-------- ; cor=; Ncor= a 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 0 0 0 0 c 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 0 0 0 0 g 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 0 0 0 0 t 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0 0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; local_words_6nt_m17 versus MA1467.1_rc (ATOH1(var.2)_rc); m=9/12; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.419368; ---RACAGCTGTT-------- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; local_words_6nt_m17 versus MA1100.2_rc (ASCL1_rc); m=10/12; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.411119; ---rgCAGCTGyy-------- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; local_words_6nt_m17 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/12; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.409799; ---rrCAGCTGbt-------- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; local_words_6nt_m17 versus MA1635.1 (BHLHE22(var.2)); m=12/12; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.404786; ---csCAGCTGsg-------- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_6nt_m7_shift1 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m7_shift1 (local_words_6nt_m7local_words_6nt_m7)
; local_words_6nt_m7 (local_words_6nt_m7local_words_6nt_m7); m=0 (reference); ncol1=23; shift=1; ncol=24; -sgccGCAGCTGCtGCaGCaGCyg ; Alignment reference a 0 19 20 4 23 3 0 92 1 2 15 1 1 19 3 2 70 4 2 55 6 4 22 11 c 0 31 24 68 48 3 104 7 1 102 7 2 100 11 6 95 17 5 97 19 3 93 27 22 g 0 33 53 23 18 96 1 2 103 0 6 100 1 9 93 2 7 92 5 12 93 6 23 65 t 0 22 8 10 16 3 0 4 0 1 77 2 3 66 3 6 11 4 1 19 3 2 33 7

MA1529.1_rc_shift0 (NHLH2_rc)
; local_words_6nt_m7 versus MA1529.1_rc (NHLH2_rc); m=1/7; ncol2=18; w=17; offset=-1; strand=R; shift=0; score=0.527402; gkGrCGCAGCTGCKrCcc------ ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 0 0 0 0 0 0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 0 0 0 0 0 0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 0 0 0 0 0 0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0 0 0 0 0 0 0

MA0500.2_shift3 (MYOG)
; local_words_6nt_m7 versus MA0500.2 (MYOG); m=2/7; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.446589; ---sarCAGCTGyts--------- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0 0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_6nt_m7 versus MA1485.1_rc (FERD3L_rc); m=3/7; ncol2=14; w=14; offset=1; strand=R; shift=2; score=0.437656; --GTrACAGCTGkyrC-------- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 0 0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 0 0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 0 0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0 0 0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; local_words_6nt_m7 versus MA1631.1_rc (ASCL1(var.2)_rc); m=4/7; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.412904; --gsrGCAGGTGchg--------- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 0 0 0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 0 0 0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 0 0 0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0 0 0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; local_words_6nt_m7 versus MA0048.2 (NHLH1); m=5/7; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.409196; ----cGCAGCTGCk---------- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0 0 0 0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; local_words_6nt_m7 versus MA0830.2_rc (TCF4_rc); m=6/7; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.407814; --ssggCAGGTGccg--------- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 0 0 0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 0 0 0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 0 0 0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0 0 0 0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; local_words_6nt_m7 versus MA0521.1_rc (Tcf12_rc); m=7/7; ncol2=11; w=11; offset=2; strand=R; shift=3; score=0.400086; ---cwsCAGCTGYy---------- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m31_shift4 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m31_shift4 (oligos_6nt_mkv3_m31oligos_6nt_mkv3_m31)
; oligos_6nt_mkv3_m31 (oligos_6nt_mkv3_m31oligos_6nt_mkv3_m31); m=0 (reference); ncol1=12; shift=4; ncol=17; ----srgAAGCCAcvs- ; Alignment reference a 0 0 0 0 83 115 58 385 385 4 0 4 388 37 141 70 0 c 0 0 0 0 125 89 51 6 6 4 390 385 3 262 109 115 0 g 0 0 0 0 117 130 260 4 1 386 5 7 3 74 102 125 0 t 0 0 0 0 72 63 28 2 5 3 2 1 3 24 45 87 0

MA1597.1_shift0 (ZNF528)
; oligos_6nt_mkv3_m31 versus MA1597.1 (ZNF528); m=1/3; ncol2=17; w=12; offset=-4; strand=D; shift=0; score=0.508703; cccAGGGAAGcCATTtC ; cor=; Ncor= a 84.0 69.0 100.0 524.0 32.0 7.0 22.0 608.0 579.0 5.0 35.0 15.0 606.0 11.0 1.0 11.0 16.0 c 380.0 367.0 404.0 12.0 3.0 5.0 2.0 3.0 4.0 1.0 414.0 590.0 2.0 47.0 97.0 129.0 558.0 g 66.0 87.0 64.0 61.0 573.0 598.0 590.0 3.0 26.0 608.0 54.0 3.0 7.0 11.0 14.0 62.0 8.0 t 86.0 93.0 48.0 19.0 8.0 6.0 2.0 2.0 7.0 2.0 113.0 8.0 1.0 547.0 504.0 414.0 34.0

MA0002.2_rc_shift7 (RUNX1_rc)
; oligos_6nt_mkv3_m31 versus MA0002.2_rc (RUNX1_rc); m=2/3; ncol2=11; w=9; offset=3; strand=R; shift=7; score=0.469848; -------waaCCACAra ; cor=; Ncor= a 0 0 0 0 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 c 0 0 0 0 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 g 0 0 0 0 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 t 0 0 0 0 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0

MA0079.4_shift6 (SP1)
; oligos_6nt_mkv3_m31 versus MA0079.4 (SP1); m=3/3; ncol2=15; w=10; offset=2; strand=D; shift=6; score=0.418285; ------ywrRCCACGCC ; cor=; Ncor= a 0 0 0 0 0 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 c 0 0 0 0 0 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 g 0 0 0 0 0 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 t 0 0 0 0 0 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0

One-to-n matrix alignment; reference matrix: local_words_6nt_m5_shift0 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m5_shift0 (local_words_6nt_m5local_words_6nt_m5)
; local_words_6nt_m5 (local_words_6nt_m5local_words_6nt_m5); m=0 (reference); ncol1=23; shift=0; ncol=24; cwGCtGCTGCaGCAGCTGCcgcc- ; Alignment reference a 4 31 1 4 21 2 3 11 8 3 72 4 0 83 1 1 2 0 1 14 21 10 26 0 c 73 26 8 102 13 3 99 9 2 101 13 1 112 7 1 112 8 6 104 65 25 62 42 0 g 23 26 100 5 13 106 7 12 100 5 7 106 2 4 111 0 5 107 2 14 53 22 27 0 t 14 31 5 3 67 3 5 82 4 5 22 3 0 20 1 1 99 1 7 21 15 20 19 0

MA1529.1_shift6 (NHLH2)
; local_words_6nt_m5 versus MA1529.1 (NHLH2); m=1/5; ncol2=18; w=17; offset=6; strand=D; shift=6; score=0.504967; ------ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 0 0 0 0 0 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 0 0 0 0 0 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 0 0 0 0 0 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 0 0 0 0 0 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0500.2_rc_shift9 (MYOG_rc)
; local_words_6nt_m5 versus MA0500.2_rc (MYOG_rc); m=2/5; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.450772; ---------sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1485.1_shift8 (FERD3L)
; local_words_6nt_m5 versus MA1485.1 (FERD3L); m=3/5; ncol2=14; w=14; offset=8; strand=D; shift=8; score=0.448773; --------GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA1631.1_shift9 (ASCL1(var.2))
; local_words_6nt_m5 versus MA1631.1 (ASCL1(var.2)); m=4/5; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.431602; ---------cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 0 0 0 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 0 0 0 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 0 0 0 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0830.2_shift9 (TCF4)
; local_words_6nt_m5 versus MA0830.2 (TCF4); m=5/5; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.419426; ---------cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 0 0 0 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 0 0 0 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 0 0 0 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

One-to-n matrix alignment; reference matrix: dyads_m28_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m28_shift0 (dyads_m28dyads_m28)
; dyads_m28 (dyads_m28dyads_m28); m=0 (reference); ncol1=11; shift=0; ncol=12; skGCCTGGChs- ; Alignment reference a 83 111 0 0 0 0 0 0 0 119 79 0 c 174 68 0 454 453 18 9 0 454 151 132 0 g 122 147 454 0 1 17 445 454 0 66 147 0 t 75 128 0 0 0 419 0 0 0 118 96 0

MA0671.1_rc_shift3 (NFIX_rc)
; dyads_m28 versus MA0671.1_rc (NFIX_rc); m=1/1; ncol2=9; w=8; offset=3; strand=R; shift=3; score=0.502913; ---byTGGCacs ; cor=; Ncor= a 0 0 0 6439.0 2399.0 110.0 0.0 29.0 2539.0 32864.0 8043.0 7378.0 c 0 0 0 9135.0 12688.0 180.0 0.0 3257.0 32864.0 5911.0 10855.0 8725.0 g 0 0 0 9039.0 1356.0 2230.0 32864.0 32864.0 186.0 9695.0 6134.0 8810.0 t 0 0 0 8251.0 32864.0 32864.0 0.0 3.0 132.0 11279.0 7832.0 7951.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m11_shift1 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m11_shift1 (oligos_6nt_mkv3_m11oligos_6nt_mkv3_m11)
; oligos_6nt_mkv3_m11 (oligos_6nt_mkv3_m11oligos_6nt_mkv3_m11); m=0 (reference); ncol1=11; shift=1; ncol=12; -sdGCCAGGCms ; Alignment reference a 0 96 117 3 0 0 427 0 0 0 128 76 c 0 152 66 4 461 452 17 1 0 461 149 126 g 0 133 156 453 0 9 17 460 461 0 73 177 t 0 80 122 1 0 0 0 0 0 0 111 82

MA0671.1_shift0 (NFIX)
; oligos_6nt_mkv3_m11 versus MA0671.1 (NFIX); m=1/1; ncol2=9; w=8; offset=-1; strand=D; shift=0; score=0.502056; sgtGCCArv--- ; cor=; Ncor= a 7951.0 7832.0 11279.0 132.0 3.0 0.0 32864.0 32864.0 8251.0 0 0 0 c 8810.0 6134.0 9695.0 186.0 32864.0 32864.0 2230.0 1356.0 9039.0 0 0 0 g 8725.0 10855.0 5911.0 32864.0 3257.0 0.0 180.0 12688.0 9135.0 0 0 0 t 7378.0 8043.0 32864.0 2539.0 29.0 0.0 110.0 2399.0 6439.0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m47_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m47_shift0 (dyads_m47dyads_m47)
; dyads_m47 (dyads_m47dyads_m47); m=0 (reference); ncol1=10; shift=0; ncol=13; ssCTCTGChs--- ; Alignment reference a 165 134 0 0 0 0 0 0 250 176 0 0 0 c 234 275 897 0 897 0 0 897 334 278 0 0 0 g 274 301 0 0 0 0 897 0 63 260 0 0 0 t 224 187 0 897 0 897 0 0 250 183 0 0 0

MA1593.1_rc_shift1 (ZNF317_rc)
; dyads_m47 versus MA1593.1_rc (ZNF317_rc); m=1/1; ncol2=12; w=9; offset=1; strand=R; shift=1; score=0.501477; -wrTCTGCTGTyw ; cor=; Ncor= a 0 4421.0 3658.0 224.0 263.0 1601.0 237.0 206.0 717.0 178.0 1245.0 1378.0 5318.0 c 0 1481.0 1334.0 206.0 10730.0 289.0 223.0 10374.0 317.0 183.0 480.0 3670.0 1985.0 g 0 1709.0 4399.0 208.0 186.0 250.0 10608.0 192.0 85.0 10821.0 357.0 2141.0 1201.0 t 0 3852.0 2072.0 10825.0 284.0 9323.0 395.0 691.0 10344.0 281.0 9381.0 4274.0 2959.0

One-to-n matrix alignment; reference matrix: local_words_6nt_m2_shift0 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m2_shift0 (local_words_6nt_m2local_words_6nt_m2)
; local_words_6nt_m2 (local_words_6nt_m2local_words_6nt_m2); m=0 (reference); ncol1=22; shift=0; ncol=22; bscTGACAGCTGCTGCAGCTsc ; Alignment reference a 4 4 6 2 1 30 1 39 0 0 3 0 1 4 3 1 28 2 2 0 7 6 c 12 12 23 8 2 4 38 0 1 39 0 0 34 3 3 33 2 1 32 7 13 17 g 13 14 5 2 35 2 0 0 38 0 0 38 1 2 31 4 4 36 2 3 15 7 t 10 9 5 27 1 3 0 0 0 0 36 1 3 30 2 1 5 0 3 29 4 9

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_6nt_m2 versus MA1485.1_rc (FERD3L_rc); m=1/8; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.49859; --GTrACAGCTGkyrC------ ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; local_words_6nt_m2 versus MA0499.2_rc (MYOD1_rc); m=2/8; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.469036; --rkrACAGGTGcwg------- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0 0 0 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; local_words_6nt_m2 versus MA0832.1_rc (Tcf21_rc); m=3/8; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.465484; --ryAACAGCTGTTry------ ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0 0 0

MA0500.2_shift3 (MYOG)
; local_words_6nt_m2 versus MA0500.2 (MYOG); m=4/8; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.453219; ---sarCAGCTGyts------- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0 0

MA0521.1_shift4 (Tcf12)
; local_words_6nt_m2 versus MA0521.1 (Tcf12); m=5/8; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.439658; ----rRCAGCTGswg------- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0 0 0 0

MA1641.1_shift3 (MYF5)
; local_words_6nt_m2 versus MA1641.1 (MYF5); m=6/8; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.434703; ---gvaCAGCTGtbc------- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; local_words_6nt_m2 versus MA1619.1 (Ptf1a(var.2)); m=7/8; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.430674; ---rmaCAGCTGtky------- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; local_words_6nt_m2 versus MA1467.1_rc (ATOH1(var.2)_rc); m=8/8; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.404309; ----RACAGCTGTT-------- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_6nt_m6_shift0 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_6nt_m6_shift0 (local_words_6nt_m6local_words_6nt_m6)
; local_words_6nt_m6 (local_words_6nt_m6local_words_6nt_m6); m=0 (reference); ncol1=22; shift=0; ncol=22; gsAGCTGCAGCAGCTGTCAgsv ; Alignment reference a 9 4 29 3 0 5 1 2 30 3 1 36 0 0 0 0 3 1 27 5 9 10 c 7 15 3 2 36 4 4 31 2 1 38 0 0 38 0 0 2 35 2 5 14 13 g 17 13 7 32 1 2 33 3 3 34 0 0 39 1 0 38 4 2 8 23 12 12 t 6 7 0 2 2 28 1 3 4 1 0 3 0 0 39 1 30 1 2 6 4 4

MA1485.1_shift6 (FERD3L)
; local_words_6nt_m6 versus MA1485.1 (FERD3L); m=1/8; ncol2=14; w=14; offset=6; strand=D; shift=6; score=0.49859; ------GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0499.2_shift7 (MYOD1)
; local_words_6nt_m6 versus MA0499.2 (MYOD1); m=2/8; ncol2=13; w=13; offset=7; strand=D; shift=7; score=0.469036; -------cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA0832.1_shift6 (Tcf21)
; local_words_6nt_m6 versus MA0832.1 (Tcf21); m=3/8; ncol2=14; w=14; offset=6; strand=D; shift=6; score=0.465484; ------ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0500.2_rc_shift7 (MYOG_rc)
; local_words_6nt_m6 versus MA0500.2_rc (MYOG_rc); m=4/8; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.453219; -------sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0521.1_rc_shift7 (Tcf12_rc)
; local_words_6nt_m6 versus MA0521.1_rc (Tcf12_rc); m=5/8; ncol2=11; w=11; offset=7; strand=R; shift=7; score=0.439658; -------cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1641.1_rc_shift7 (MYF5_rc)
; local_words_6nt_m6 versus MA1641.1_rc (MYF5_rc); m=6/8; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.434703; -------gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1619.1_rc_shift7 (Ptf1a(var.2)_rc)
; local_words_6nt_m6 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/8; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.430674; -------rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1467.1_shift8 (ATOH1(var.2))
; local_words_6nt_m6 versus MA1467.1 (ATOH1(var.2)); m=8/8; ncol2=10; w=10; offset=8; strand=D; shift=8; score=0.404309; --------AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m4_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m4_shift0 (oligos_6nt_mkv3_m4oligos_6nt_mkv3_m4)
; oligos_6nt_mkv3_m4 (oligos_6nt_mkv3_m4oligos_6nt_mkv3_m4); m=0 (reference); ncol1=12; shift=0; ncol=17; svAAAGCCACms----- ; Alignment reference a 82 90 239 326 325 20 4 3 327 20 127 60 0 0 0 0 0 c 88 115 32 4 6 4 322 330 3 259 92 112 0 0 0 0 0 g 102 89 41 4 2 312 7 3 8 50 84 100 0 0 0 0 0 t 68 46 28 6 7 4 7 4 2 11 37 68 0 0 0 0 0

MA0002.2_rc_shift3 (RUNX1_rc)
; oligos_6nt_mkv3_m4 versus MA0002.2_rc (RUNX1_rc); m=1/2; ncol2=11; w=9; offset=3; strand=R; shift=3; score=0.486465; ---waaCCACAram--- ; cor=; Ncor= a 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 0 0 c 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 0 0 g 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 0 0 t 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0 0 0

MA0079.4_shift2 (SP1)
; oligos_6nt_mkv3_m4 versus MA0079.4 (SP1); m=2/2; ncol2=15; w=10; offset=2; strand=D; shift=2; score=0.425046; --ywrRCCACGCCCmCh ; cor=; Ncor= a 0 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 c 0 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 g 0 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 t 0 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m15_shift3 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m15_shift3 (oligos_6nt_mkv3_m15oligos_6nt_mkv3_m15)
; oligos_6nt_mkv3_m15 (oligos_6nt_mkv3_m15oligos_6nt_mkv3_m15); m=0 (reference); ncol1=11; shift=3; ncol=14; ---crGAAGCAAcy ; Alignment reference a 0 0 0 28 33 1 114 114 6 3 106 113 25 23 c 0 0 0 53 16 0 0 0 1 101 3 2 46 34 g 0 0 0 23 43 108 0 1 106 6 4 0 25 26 t 0 0 0 11 23 6 1 0 2 5 2 0 19 32

MA1646.1_shift0 (OSR2)
; oligos_6nt_mkv3_m15 versus MA1646.1 (OSR2); m=1/5; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.483951; amaCAGAAGChr-- ; cor=; Ncor= a 4437.0 4244.0 8520.0 254.0 13599.0 216.0 11678.0 13725.0 416.0 666.0 4386.0 4048.0 0 0 c 3641.0 4206.0 2221.0 13937.0 197.0 229.0 703.0 288.0 170.0 12109.0 4274.0 3304.0 0 0 g 3246.0 3006.0 2117.0 406.0 737.0 14206.0 901.0 516.0 13982.0 841.0 2266.0 4726.0 0 0 t 3484.0 3352.0 1950.0 211.0 275.0 157.0 1526.0 279.0 240.0 1192.0 3882.0 2730.0 0 0

MA0764.2_shift1 (ETV4)
; oligos_6nt_mkv3_m15 versus MA0764.2 (ETV4); m=2/5; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.436794; -rcAGGAAGyr--- ; cor=; Ncor= a 0 3119.0 1206.0 8353.0 0.0 1.0 8374.0 8333.0 11.0 1296.0 2336.0 0 0 0 c 0 1494.0 4608.0 61.0 92.0 1.0 0.0 73.0 28.0 2194.0 1597.0 0 0 0 g 0 2721.0 1936.0 0.0 8308.0 8345.0 0.0 0.0 8344.0 1949.0 3055.0 0 0 0 t 0 1080.0 664.0 0.0 14.0 67.0 40.0 8.0 31.0 2975.0 1426.0 0 0 0

MA0645.1_shift1 (ETV6)
; oligos_6nt_mkv3_m15 versus MA0645.1 (ETV6); m=3/5; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.433041; -msCGGAAGTr--- ; cor=; Ncor= a 0 9414.0 342.0 1476.0 7.0 21.0 6687.0 6687.0 768.0 184.0 2049.0 0 0 0 c 0 6562.0 2394.0 6379.0 0.0 0.0 0.0 13.0 52.0 834.0 342.0 0 0 0 g 0 4684.0 4292.0 397.0 6687.0 6687.0 7.0 32.0 6687.0 233.0 3205.0 0 0 0 t 0 2002.0 441.0 308.0 13.0 22.0 0.0 41.0 0.0 6687.0 1091.0 0 0 0

MA0136.2_shift0 (ELF5)
; oligos_6nt_mkv3_m15 versus MA0136.2 (ELF5); m=4/5; ncol2=11; w=8; offset=-3; strand=D; shift=0; score=0.422883; acsmGGAAGtr--- ; cor=; Ncor= a 2416.0 1221.0 987.0 1458.0 3.0 5.0 2699.0 2646.0 890.0 477.0 959.0 0 0 0 c 252.0 2298.0 2453.0 2528.0 0.0 0.0 11.0 61.0 155.0 716.0 371.0 0 0 0 g 301.0 955.0 1266.0 309.0 3307.0 3315.0 1.0 0.0 2857.0 312.0 762.0 0 0 0 t 793.0 866.0 97.0 56.0 20.0 25.0 4.0 245.0 84.0 2470.0 663.0 0 0 0

MA1484.1_shift0 (ETS2)
; oligos_6nt_mkv3_m15 versus MA1484.1 (ETS2); m=5/5; ncol2=10; w=7; offset=-3; strand=D; shift=0; score=0.403982; rACCGGAWGy---- ; cor=; Ncor= a 5261.0 16738.0 643.0 1279.0 7.0 4.0 16738.0 11582.0 3050.0 0.0 0 0 0 0 c 2830.0 471.0 16738.0 16738.0 0.0 7.0 13.0 204.0 0.0 8136.0 0 0 0 0 g 5702.0 3136.0 1306.0 0.0 16738.0 16738.0 7.0 0.0 13730.0 415.0 0 0 0 0 t 2945.0 727.0 0.0 0.0 5.0 0.0 0.0 4953.0 0.0 8190.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv5_m16_shift2 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv5_m16_shift2 (oligos_8nt_mkv5_m16oligos_8nt_mkv5_m16)
; oligos_8nt_mkv5_m16 (oligos_8nt_mkv5_m16oligos_8nt_mkv5_m16); m=0 (reference); ncol1=12; shift=2; ncol=14; --vsCACAGGCAsc ; Alignment reference a 0 0 55 31 1 169 0 163 1 0 2 167 16 38 c 0 0 45 66 164 0 170 1 9 0 169 0 46 77 g 0 0 45 46 2 3 0 8 161 172 1 5 73 38 t 0 0 27 29 5 0 2 0 1 0 0 0 37 19

MA0002.2_rc_shift0 (RUNX1_rc)
; oligos_8nt_mkv5_m16 versus MA0002.2_rc (RUNX1_rc); m=1/1; ncol2=11; w=9; offset=-2; strand=R; shift=0; score=0.481034; waaCCACAram--- ; cor=; Ncor= a 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 0 0 c 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 0 0 g 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 0 0 t 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m22_shift1 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m22_shift1 (dyads_m22dyads_m22)
; dyads_m22 (dyads_m22dyads_m22); m=0 (reference); ncol1=17; shift=1; ncol=18; -ssCCGCssccsCCGCss ; Alignment reference a 0 68 62 15 18 32 7 61 58 45 42 63 7 15 12 11 51 62 c 0 277 189 501 513 27 528 262 194 315 317 162 517 514 37 525 273 177 g 0 149 255 34 19 494 22 172 263 141 141 265 38 31 503 27 186 254 t 0 76 64 20 20 17 13 75 55 69 70 80 8 10 18 7 60 77

MA1513.1_shift0 (KLF15)
; dyads_m22 versus MA1513.1 (KLF15); m=1/1; ncol2=11; w=10; offset=-1; strand=D; shift=0; score=0.460298; scCCCGCCCcs------- ; cor=; Ncor= a 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 0 0 0 0 c 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 0 0 0 0 g 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 0 0 0 0 t 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m50_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m50_shift0 (oligos_7nt_mkv4_m50oligos_7nt_mkv4_m50)
; oligos_7nt_mkv4_m50 (oligos_7nt_mkv4_m50oligos_7nt_mkv4_m50); m=0 (reference); ncol1=12; shift=0; ncol=12; gsCAAGCTCTsv ; Alignment reference a 11 14 2 65 59 1 1 1 5 0 12 18 c 16 22 58 0 7 5 59 0 60 2 21 17 g 26 20 2 2 0 59 7 2 0 3 18 19 t 14 11 5 0 1 2 0 64 2 62 16 13

MA0164.1_shift2 (Nr2e3)
; oligos_7nt_mkv4_m50 versus MA0164.1 (Nr2e3); m=1/1; ncol2=7; w=7; offset=2; strand=D; shift=2; score=0.449357; --cAAGCTT--- ; cor=; Ncor= a 0 0 4.0 23.0 23.0 0.0 0.0 0.0 0.0 0 0 0 c 0 0 12.0 0.0 0.0 1.0 23.0 0.0 0.0 0 0 0 g 0 0 2.0 0.0 0.0 22.0 0.0 0.0 0.0 0 0 0 t 0 0 5.0 0.0 0.0 0.0 0.0 23.0 23.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m30_shift2 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m30_shift2 (oligos_7nt_mkv4_m30oligos_7nt_mkv4_m30)
; oligos_7nt_mkv4_m30 (oligos_7nt_mkv4_m30oligos_7nt_mkv4_m30); m=0 (reference); ncol1=11; shift=2; ncol=13; --ssCGmGCCGss ; Alignment reference a 0 0 25 28 0 1 126 4 11 0 1 25 29 c 0 0 100 79 222 0 76 12 199 224 5 104 79 g 0 0 78 98 8 229 22 207 13 6 224 74 93 t 0 0 27 25 0 0 6 7 7 0 0 27 29

MA1099.2_rc_shift0 (HES1_rc)
; oligos_7nt_mkv4_m30 versus MA1099.2_rc (HES1_rc); m=1/2; ncol2=10; w=8; offset=-2; strand=R; shift=0; score=0.448518; gvCACGyGcc--- ; cor=; Ncor= a 3216.0 4837.0 53.0 18526.0 0.0 791.0 232.0 18.0 8007.0 4239.0 0 0 0 c 6013.0 6360.0 18526.0 0.0 18526.0 0.0 9081.0 0.0 18526.0 18526.0 0 0 0 g 12513.0 6203.0 0.0 4057.0 0.0 18526.0 0.0 18526.0 2072.0 3492.0 0 0 0 t 2742.0 1126.0 1.0 253.0 21.0 0.0 9446.0 464.0 5858.0 3321.0 0 0 0

MA0616.2_rc_shift0 (HES2_rc)
; oligos_7nt_mkv4_m30 versus MA0616.2_rc (HES2_rc); m=2/2; ncol2=10; w=8; offset=-2; strand=R; shift=0; score=0.44384; grCACGTGcC--- ; cor=; Ncor= a 1319.0 3849.0 0.0 8483.0 0.0 129.0 0.0 73.0 1581.0 798.0 0 0 0 c 1735.0 1289.0 8483.0 0.0 8483.0 0.0 2028.0 85.0 8483.0 8483.0 0 0 0 g 4464.0 4634.0 15.0 1098.0 0.0 8483.0 0.0 8483.0 1107.0 1193.0 0 0 0 t 966.0 512.0 53.0 0.0 0.0 0.0 6455.0 118.0 1501.0 775.0 0 0 0

One-to-n matrix alignment; reference matrix: local_words_8nt_m3_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m3_shift0 (local_words_8nt_m3local_words_8nt_m3)
; local_words_8nt_m3 (local_words_8nt_m3local_words_8nt_m3); m=0 (reference); ncol1=24; shift=0; ncol=24; vbswGACAGCTGCAGCTGTCwsvb ; Alignment reference a 6 2 4 6 0 19 0 22 0 1 4 1 0 19 0 0 0 1 1 0 14 2 8 4 c 6 7 6 0 1 1 21 1 1 21 1 0 23 0 2 23 1 2 3 23 4 12 7 8 g 8 7 12 4 23 3 2 1 23 2 0 23 0 1 21 1 1 21 1 1 0 6 7 6 t 4 8 2 14 0 1 1 0 0 0 19 0 1 4 1 0 22 0 19 0 6 4 2 6

MA1485.1_rc_shift2 (FERD3L_rc)
; local_words_8nt_m3 versus MA1485.1_rc (FERD3L_rc); m=1/2; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.434461; --GTrACAGCTGkyrC-------- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 0 0 0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 0 0 0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 0 0 0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0 0 0 0 0 0

MA0499.2_shift9 (MYOD1)
; local_words_8nt_m3 versus MA0499.2 (MYOD1); m=2/2; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.433839; ---------cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 0 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 0 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 0 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m27_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m27_shift0 (oligos_7nt_mkv4_m27oligos_7nt_mkv4_m27)
; oligos_7nt_mkv4_m27 (oligos_7nt_mkv4_m27oligos_7nt_mkv4_m27); m=0 (reference); ncol1=11; shift=0; ncol=14; ssCGGCCCGss--- ; Alignment reference a 31 34 1 0 6 7 6 0 0 39 29 0 0 0 c 165 94 309 39 23 279 227 295 7 143 110 0 0 0 g 81 149 5 276 267 22 71 20 308 98 142 0 0 0 t 38 38 0 0 19 7 11 0 0 35 34 0 0 0

MA1513.1_shift3 (KLF15)
; oligos_7nt_mkv4_m27 versus MA1513.1 (KLF15); m=1/1; ncol2=11; w=8; offset=3; strand=D; shift=3; score=0.431025; ---scCCCGCCCcs ; cor=; Ncor= a 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 c 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 g 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 t 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m24_shift2 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m24_shift2 (oligos_7nt_mkv4_m24oligos_7nt_mkv4_m24)
; oligos_7nt_mkv4_m24 (oligos_7nt_mkv4_m24oligos_7nt_mkv4_m24); m=0 (reference); ncol1=12; shift=2; ncol=14; --rmTGAGCTAcas ; Alignment reference a 0 0 43 37 2 5 122 7 3 0 125 13 51 29 c 0 0 21 46 4 0 2 1 102 1 2 85 23 37 g 0 0 40 31 1 120 4 119 2 1 1 12 32 33 t 0 0 25 15 122 4 1 2 22 127 1 19 23 30

MA0793.1_rc_shift0 (POU6F2_rc)
; oligos_7nt_mkv4_m24 versus MA0793.1_rc (POU6F2_rc); m=1/2; ncol2=10; w=8; offset=-2; strand=R; shift=0; score=0.42432; wTAATkAGst---- ; cor=; Ncor= a 1278.0 53.0 3297.0 3297.0 21.0 81.0 3297.0 257.0 266.0 546.0 0 0 0 0 c 205.0 22.0 41.0 0.0 0.0 50.0 114.0 219.0 2116.0 582.0 0 0 0 0 g 546.0 27.0 12.0 4.0 75.0 2105.0 64.0 3297.0 1181.0 321.0 0 0 0 0 t 1268.0 3297.0 0.0 0.0 3297.0 1192.0 75.0 239.0 714.0 1848.0 0 0 0 0

MA1542.1_shift6 (OSR1)
; oligos_7nt_mkv4_m24 versus MA1542.1 (OSR1); m=2/2; ncol2=10; w=8; offset=4; strand=D; shift=6; score=0.414422; ------yGCTACyG ; cor=; Ncor= a 0 0 0 0 0 0 1028.0 448.0 0.0 4.0 4890.0 10.0 0.0 62.0 c 0 0 0 0 0 0 1302.0 235.0 4890.0 99.0 83.0 4890.0 2103.0 4.0 g 0 0 0 0 0 0 717.0 4890.0 0.0 0.0 38.0 0.0 5.0 4890.0 t 0 0 0 0 0 0 1843.0 17.0 18.0 4890.0 444.0 0.0 2787.0 24.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m27_shift3 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m27_shift3 (oligos_6nt_mkv3_m27oligos_6nt_mkv3_m27)
; oligos_6nt_mkv3_m27 (oligos_6nt_mkv3_m27oligos_6nt_mkv3_m27); m=0 (reference); ncol1=11; shift=3; ncol=14; ---awAAAGCAAah ; Alignment reference a 0 0 0 63 53 140 148 149 9 28 146 150 53 42 c 0 0 0 27 22 0 0 1 7 110 1 1 29 39 g 0 0 0 31 33 2 0 0 129 4 3 0 37 32 t 0 0 0 31 44 10 4 2 7 10 2 1 33 39

MA0508.3_rc_shift0 (PRDM1_rc)
; oligos_6nt_mkv3_m27 versus MA0508.3_rc (PRDM1_rc); m=1/2; ncol2=11; w=8; offset=-3; strand=R; shift=0; score=0.420495; raGAGAAAGwr--- ; cor=; Ncor= a 19978.0 27294.0 660.0 49466.0 432.0 52619.0 50943.0 52905.0 829.0 17272.0 22293.0 0 0 0 c 7861.0 4098.0 290.0 1390.0 207.0 561.0 1011.0 826.0 701.0 8768.0 6638.0 0 0 0 g 17518.0 13567.0 52821.0 1076.0 53465.0 488.0 1346.0 467.0 52752.0 12288.0 17788.0 0 0 0 t 10124.0 10522.0 1710.0 3549.0 1377.0 1813.0 2181.0 1283.0 1199.0 17153.0 8762.0 0 0 0

MA0442.2_shift0 (SOX10)
; oligos_6nt_mkv3_m27 versus MA0442.2 (SOX10); m=2/2; ncol2=11; w=8; offset=-3; strand=D; shift=0; score=0.406805; rraACAAAGvm--- ; cor=; Ncor= a 683.0 723.0 1118.0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 666.0 638.0 0 0 0 c 397.0 283.0 372.0 4.0 1989.0 7.0 28.0 23.0 13.0 552.0 555.0 0 0 0 g 527.0 571.0 317.0 3.0 11.0 7.0 20.0 12.0 2012.0 619.0 505.0 0 0 0 t 448.0 478.0 248.0 25.0 52.0 12.0 39.0 61.0 20.0 218.0 357.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m17_shift4 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m17_shift4 (oligos_6nt_mkv3_m17oligos_6nt_mkv3_m17)
; oligos_6nt_mkv3_m17 (oligos_6nt_mkv3_m17oligos_6nt_mkv3_m17); m=0 (reference); ncol1=11; shift=4; ncol=15; ----ssGCGGCGsss ; Alignment reference a 0 0 0 0 77 59 9 7 0 14 10 3 32 44 80 c 0 0 0 0 288 298 35 628 69 60 617 21 430 258 193 g 0 0 0 0 224 263 602 15 586 567 22 617 168 293 314 t 0 0 0 0 66 35 9 5 0 14 6 14 25 60 68

MA0748.2_shift1 (YY2)
; oligos_6nt_mkv3_m17 versus MA0748.2 (YY2); m=1/2; ncol2=11; w=8; offset=-3; strand=D; shift=1; score=0.411389; -msATGGCGGcs--- ; cor=; Ncor= a 0 1973.0 1280.0 5263.0 58.0 48.0 126.0 109.0 64.0 411.0 961.0 939.0 0 0 0 c 0 1591.0 1607.0 46.0 273.0 120.0 101.0 5384.0 330.0 516.0 2876.0 1535.0 0 0 0 g 0 1068.0 2143.0 359.0 125.0 5509.0 5376.0 25.0 5231.0 4474.0 920.0 2373.0 0 0 0 t 0 1072.0 674.0 36.0 5248.0 27.0 101.0 186.0 79.0 303.0 947.0 857.0 0 0 0

MA1650.1_rc_shift0 (ZBTB14_rc)
; oligos_6nt_mkv3_m17 versus MA1650.1_rc (ZBTB14_rc); m=2/2; ncol2=12; w=8; offset=-4; strand=R; shift=0; score=0.401034; ssGTGCGCGGss--- ; cor=; Ncor= a 606.0 508.0 123.0 0.0 52.0 67.0 82.0 62.0 59.0 73.0 519.0 530.0 0 0 0 c 1239.0 1451.0 651.0 10.0 261.0 4043.0 319.0 4098.0 155.0 614.0 1555.0 1668.0 0 0 0 g 2260.0 1618.0 3674.0 37.0 4178.0 305.0 4078.0 294.0 4292.0 3525.0 1972.0 1779.0 0 0 0 t 442.0 970.0 99.0 4500.0 56.0 132.0 68.0 93.0 41.0 335.0 501.0 570.0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m30_shift1 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m30_shift1 (dyads_m30dyads_m30)
; dyads_m30 (dyads_m30dyads_m30); m=0 (reference); ncol1=20; shift=1; ncol=21; -ssCCGCsscsscssCCGCss ; Alignment reference a 0 63 54 8 16 21 14 66 68 49 55 64 35 64 60 12 22 11 9 61 48 c 0 256 195 490 486 31 504 265 192 291 267 186 318 268 179 491 483 24 507 244 208 g 0 146 241 42 25 482 20 139 234 137 150 238 127 143 252 30 34 496 23 173 231 t 0 85 60 10 23 16 12 80 56 73 78 62 70 75 59 17 11 19 11 72 63

MA1513.1_shift0 (KLF15)
; dyads_m30 versus MA1513.1 (KLF15); m=1/1; ncol2=11; w=10; offset=-1; strand=D; shift=0; score=0.40338; scCCCGCCCcs---------- ; cor=; Ncor= a 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 0 0 0 0 0 0 0 c 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 0 0 0 0 0 0 0 g 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 0 0 0 0 0 0 0 t 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m22_shift1 (oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22)				; oligos_6nt_mkv3_m22 (oligos_6nt_mkv3_m22oligos_6nt_mkv3_m22); m=0 (reference); ncol1=13; shift=1; ncol=14; -cdGCACCTGCCvy ; Alignment reference a 0 82 141 44 1 525 1 1 1 0 13 5 145 69 c 0 216 110 83 532 6 519 528 7 4 405 406 151 218 g 0 114 149 393 4 6 15 7 6 531 32 7 135 110 t 0 126 138 18 1 1 3 2 524 3 88 120 107 141
MA1631.1_shift1 (ASCL1(var.2))				; oligos_6nt_mkv3_m22 versus MA1631.1 (ASCL1(var.2)); m=1/40; ncol2=13; w=13; offset=0; strand=D; shift=1; score=0.984573; -cdgCACCTGCysc ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0
MA0830.2_shift1 (TCF4)				; oligos_6nt_mkv3_m22 versus MA0830.2 (TCF4); m=2/40; ncol2=13; w=13; offset=0; strand=D; shift=1; score=0.981012; -cggCACCTGccss ; cor=; Ncor= a 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 c 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 g 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 t 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0
MA0499.2_shift1 (MYOD1)				; oligos_6nt_mkv3_m22 versus MA0499.2 (MYOD1); m=3/40; ncol2=13; w=13; offset=0; strand=D; shift=1; score=0.888701; -cwgCACCTGTymy ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0
MA0745.2_shift1 (SNAI2)				; oligos_6nt_mkv3_m22 versus MA0745.2 (SNAI2); m=4/40; ncol2=13; w=13; offset=0; strand=D; shift=1; score=0.888108; -aygCACCTGTmry ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0
MA1648.1_shift2 (TCF12(var.2))				; oligos_6nt_mkv3_m22 versus MA1648.1 (TCF12(var.2)); m=5/40; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.791466; --ssCACCTGCys- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0
MA0522.3_shift2 (TCF3)				; oligos_6nt_mkv3_m22 versus MA0522.3 (TCF3); m=6/40; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.788378; --svCACCTGCss- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0
MA1621.1_shift0 (Rbpjl)				; oligos_6nt_mkv3_m22 versus MA1621.1 (Rbpjl); m=7/40; ncol2=14; w=13; offset=-1; strand=D; shift=0; score=0.784814; svmaCACCTGtsyc ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0
MA0103.3_shift2 (ZEB1)				; oligos_6nt_mkv3_m22 versus MA0103.3 (ZEB1); m=8/40; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.775667; --ssCACCTGsss- ; cor=; Ncor= a 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 c 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 g 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 t 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0
MA1620.1_shift1 (Ptf1a(var.3))				; oligos_6nt_mkv3_m22 versus MA1620.1 (Ptf1a(var.3)); m=9/40; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.755329; -rmaCACCTGtky- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0
MA1558.1_rc_shift2 (SNAI1_rc)				; oligos_6nt_mkv3_m22 versus MA1558.1_rc (SNAI1_rc); m=10/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.726483; --yrCACCTGyh-- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0
MA0822.1_shift1 (HES7)				; oligos_6nt_mkv3_m22 versus MA0822.1 (HES7); m=11/40; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.712772; -yGGCACGTGCCr- ; cor=; Ncor= a 0 168.0 24.0 160.0 1.0 1864.0 0.0 4.0 3.0 2.0 8.0 0.0 946.0 0 c 0 790.0 19.0 29.0 1864.0 3.0 1864.0 1.0 3.0 1.0 1864.0 1864.0 47.0 0 g 0 43.0 1864.0 1864.0 0.0 7.0 0.0 1864.0 1.0 1864.0 5.0 9.0 734.0 0 t 0 863.0 3.0 2.0 3.0 0.0 0.0 1.0 1864.0 0.0 93.0 9.0 137.0 0
MA0821.1_shift1 (HES5)				; oligos_6nt_mkv3_m22 versus MA0821.1 (HES5); m=12/40; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.710147; -yGrCACGTGCCr- ; cor=; Ncor= a 0 216.0 47.0 764.0 0.0 1559.0 1.0 1.0 0.0 0.0 0.0 0.0 651.0 0 c 0 779.0 6.0 63.0 1559.0 0.0 1559.0 0.0 7.0 0.0 1559.0 1559.0 153.0 0 g 0 30.0 1559.0 1559.0 0.0 1.0 0.0 1559.0 0.0 1559.0 14.0 1.0 475.0 0 t 0 535.0 1.0 0.0 0.0 0.0 1.0 0.0 1559.0 0.0 267.0 14.0 279.0 0
MA0500.2_shift1 (MYOG)				; oligos_6nt_mkv3_m22 versus MA0500.2 (MYOG); m=13/40; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.695953; -sarCAGCTGyts- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0
MA1559.1_rc_shift2 (SNAI3_rc)				; oligos_6nt_mkv3_m22 versus MA1559.1_rc (SNAI3_rc); m=14/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.695124; --trCACCTGyt-- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0
MA0521.1_rc_shift1 (Tcf12_rc)				; oligos_6nt_mkv3_m22 versus MA0521.1_rc (Tcf12_rc); m=15/40; ncol2=11; w=11; offset=0; strand=R; shift=1; score=0.667131; -cwsCAGCTGYy-- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0
MA1100.2_rc_shift2 (ASCL1_rc)				; oligos_6nt_mkv3_m22 versus MA1100.2_rc (ASCL1_rc); m=16/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.651189; --rgCAGCTGyy-- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0
MA0147.3_shift1 (MYC)				; oligos_6nt_mkv3_m22 versus MA0147.3 (MYC); m=17/40; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.647091; -ssCCACGTGcys- ; cor=; Ncor= a 0 1038.0 1019.0 438.0 44.0 4600.0 54.0 169.0 59.0 23.0 419.0 961.0 755.0 0 c 0 1345.0 1287.0 3746.0 4840.0 59.0 4525.0 157.0 162.0 56.0 2801.0 1524.0 1785.0 0 g 0 1649.0 1757.0 472.0 31.0 170.0 70.0 4578.0 63.0 4817.0 1198.0 1036.0 1348.0 0 t 0 910.0 879.0 286.0 27.0 113.0 293.0 38.0 4658.0 46.0 524.0 1421.0 1054.0 0
MA0820.1_shift2 (FIGLA)				; oligos_6nt_mkv3_m22 versus MA0820.1 (FIGLA); m=18/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.624436; --wmCACCTGkw-- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0
MA0816.1_shift2 (Ascl2)				; oligos_6nt_mkv3_m22 versus MA0816.1 (Ascl2); m=19/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.598514; --arCAGCTGyy-- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0
MA0048.2_shift2 (NHLH1)				; oligos_6nt_mkv3_m22 versus MA0048.2 (NHLH1); m=20/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.598166; --cGCAGCTGCk-- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0
MA0616.2_rc_shift2 (HES2_rc)				; oligos_6nt_mkv3_m22 versus MA0616.2_rc (HES2_rc); m=21/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.588679; --grCACGTGcC-- ; cor=; Ncor= a 0 0 1319.0 3849.0 0.0 8483.0 0.0 129.0 0.0 73.0 1581.0 798.0 0 0 c 0 0 1735.0 1289.0 8483.0 0.0 8483.0 0.0 2028.0 85.0 8483.0 8483.0 0 0 g 0 0 4464.0 4634.0 15.0 1098.0 0.0 8483.0 0.0 8483.0 1107.0 1193.0 0 0 t 0 0 966.0 512.0 53.0 0.0 0.0 0.0 6455.0 118.0 1501.0 775.0 0 0
MA0823.1_shift2 (HEY1)				; oligos_6nt_mkv3_m22 versus MA0823.1 (HEY1); m=22/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.583058; --grCACGTGyc-- ; cor=; Ncor= a 0 0 437.0 1373.0 1.0 3338.0 0.0 0.0 0.0 32.0 333.0 475.0 0 0 c 0 0 761.0 656.0 3338.0 30.0 3338.0 18.0 474.0 19.0 1762.0 2172.0 0 0 g 0 0 1788.0 1199.0 3.0 123.0 0.0 3338.0 10.0 3338.0 380.0 373.0 0 0 t 0 0 352.0 110.0 15.0 21.0 0.0 0.0 3338.0 22.0 863.0 318.0 0 0
MA0649.1_rc_shift2 (HEY2_rc)				; oligos_6nt_mkv3_m22 versus MA0649.1_rc (HEY2_rc); m=23/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.582118; --grCACGTGyC-- ; cor=; Ncor= a 0 0 264.0 753.0 30.0 1800.0 0.0 0.0 0.0 58.0 224.0 101.0 0 0 c 0 0 382.0 128.0 1800.0 0.0 1800.0 0.0 128.0 83.0 620.0 1800.0 0 0 g 0 0 869.0 1047.0 34.0 120.0 72.0 1800.0 0.0 1800.0 305.0 99.0 0 0 t 0 0 285.0 50.0 0.0 36.0 27.0 7.0 1800.0 84.0 651.0 107.0 0 0
MA1560.1_shift2 (SOHLH2)				; oligos_6nt_mkv3_m22 versus MA1560.1 (SOHLH2); m=24/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.572264; --ygCACGTGcr-- ; cor=; Ncor= a 0 0 230.0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 381.0 0 0 c 0 0 485.0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 239.0 0 0 g 0 0 184.0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 369.0 0 0 t 0 0 313.0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0 224.0 0 0
MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)				; oligos_6nt_mkv3_m22 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=25/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.566058; --csCAGCTGsg-- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0
MA0464.2_shift2 (BHLHE40)				; oligos_6nt_mkv3_m22 versus MA0464.2 (BHLHE40); m=26/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.563157; --vkCACGTGmc-- ; cor=; Ncor= a 0 0 3824.0 1391.0 59.0 11222.0 23.0 66.0 167.0 4.0 5927.0 1544.0 0 0 c 0 0 3025.0 481.0 11222.0 130.0 11222.0 30.0 248.0 12.0 5295.0 5706.0 0 0 g 0 0 2926.0 5000.0 0.0 78.0 2.0 11222.0 87.0 11222.0 129.0 1385.0 0 0 t 0 0 1447.0 6222.0 14.0 77.0 32.0 0.0 11222.0 72.0 500.0 2587.0 0 0
MA0825.1_shift2 (MNT)				; oligos_6nt_mkv3_m22 versus MA0825.1 (MNT); m=27/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.562421; --avCACGTGcy-- ; cor=; Ncor= a 0 0 279.0 187.0 27.0 681.0 0.0 15.0 0.0 0.0 150.0 159.0 0 0 c 0 0 128.0 228.0 681.0 0.0 681.0 0.0 0.0 0.0 281.0 229.0 0 0 g 0 0 145.0 203.0 0.0 0.0 7.0 681.0 15.0 681.0 131.0 75.0 0 0 t 0 0 129.0 63.0 5.0 21.0 16.0 0.0 681.0 25.0 120.0 219.0 0 0
MA0058.3_shift2 (MAX)				; oligos_6nt_mkv3_m22 versus MA0058.3 (MAX); m=28/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.553388; --amCACGTGcy-- ; cor=; Ncor= a 0 0 3307.0 1915.0 39.0 6876.0 0.0 329.0 69.0 0.0 1341.0 1122.0 0 0 c 0 0 1556.0 2809.0 6876.0 0.0 6876.0 39.0 159.0 27.0 2450.0 2225.0 0 0 g 0 0 1295.0 1514.0 0.0 87.0 7.0 6876.0 20.0 6876.0 1638.0 986.0 0 0 t 0 0 719.0 637.0 0.0 38.0 229.0 19.0 6876.0 36.0 1446.0 2543.0 0 0
MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)				; oligos_6nt_mkv3_m22 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=29/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.550766; --rrCAGCTGbt-- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0
MA0100.3_shift2 (MYB)				; oligos_6nt_mkv3_m22 versus MA0100.3 (MYB); m=30/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.549836; --mbCAACTGhm-- ; cor=; Ncor= a 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 c 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 g 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 t 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0
MA1464.1_rc_shift2 (ARNT2_rc)				; oligos_6nt_mkv3_m22 versus MA1464.1_rc (ARNT2_rc); m=31/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.546842; --skCACGTGay-- ; cor=; Ncor= a 0 0 8251.0 7159.0 971.0 40622.0 0.0 148.0 460.0 0.0 40622.0 1951.0 0 0 c 0 0 12031.0 3912.0 40622.0 111.0 40622.0 0.0 532.0 115.0 9525.0 28841.0 0 0 g 0 0 12448.0 22063.0 0.0 932.0 0.0 40622.0 122.0 40622.0 4901.0 4265.0 0 0 t 0 0 7892.0 18559.0 14.0 651.0 84.0 0.0 40622.0 505.0 9572.0 11781.0 0 0
MA0626.1_shift2 (Npas2)				; oligos_6nt_mkv3_m22 versus MA0626.1 (Npas2); m=32/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.546681; --dsCACGTGtm-- ; cor=; Ncor= a 0 0 273.0 154.0 0.0 999.0 81.0 81.0 0.0 81.0 74.0 297.0 0 0 c 0 0 177.0 377.0 999.0 0.0 918.0 0.0 0.0 0.0 172.0 299.0 0 0 g 0 0 293.0 420.0 0.0 0.0 0.0 918.0 0.0 918.0 188.0 202.0 0 0 t 0 0 257.0 48.0 0.0 0.0 0.0 0.0 999.0 0.0 566.0 202.0 0 0
MA1108.2_shift2 (MXI1)				; oligos_6nt_mkv3_m22 versus MA1108.2 (MXI1); m=33/40; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.545709; --rvCACATGkc-- ; cor=; Ncor= a 0 0 5786.0 6184.0 109.0 21870.0 10.0 20506.0 0.0 527.0 2833.0 4945.0 0 0 c 0 0 4724.0 5841.0 21382.0 1.0 21552.0 0.0 507.0 114.0 5329.0 6343.0 0 0 g 0 0 6326.0 6078.0 97.0 170.0 18.0 1542.0 0.0 21232.0 7228.0 5394.0 0 0 t 0 0 5212.0 3945.0 460.0 7.0 468.0 0.0 21541.0 175.0 6658.0 5366.0 0 0
MA1493.1_rc_shift2 (HES6_rc)				; oligos_6nt_mkv3_m22 versus MA1493.1_rc (HES6_rc); m=34/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.545414; --rACACGTGCC-- ; cor=; Ncor= a 0 0 209.0 439.0 0.0 439.0 0.0 16.0 11.0 15.0 13.0 43.0 0 0 c 0 0 0.0 0.0 439.0 29.0 439.0 9.0 9.0 19.0 439.0 439.0 0 0 g 0 0 152.0 21.0 0.0 7.0 12.0 439.0 0.0 439.0 35.0 39.0 0 0 t 0 0 79.0 33.0 0.0 0.0 10.0 2.0 439.0 17.0 16.0 12.0 0 0
MA1099.2_rc_shift2 (HES1_rc)				; oligos_6nt_mkv3_m22 versus MA1099.2_rc (HES1_rc); m=35/40; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.540258; --gvCACGyGcc-- ; cor=; Ncor= a 0 0 3216.0 4837.0 53.0 18526.0 0.0 791.0 232.0 18.0 8007.0 4239.0 0 0 c 0 0 6013.0 6360.0 18526.0 0.0 18526.0 0.0 9081.0 0.0 18526.0 18526.0 0 0 g 0 0 12513.0 6203.0 0.0 4057.0 0.0 18526.0 0.0 18526.0 2072.0 3492.0 0 0 t 0 0 2742.0 1126.0 1.0 253.0 21.0 0.0 9446.0 464.0 5858.0 3321.0 0 0
MA0807.1_rc_shift1 (TBX5_rc)				; oligos_6nt_mkv3_m22 versus MA0807.1_rc (TBX5_rc); m=36/40; ncol2=8; w=8; offset=0; strand=R; shift=1; score=0.484541; -TmACACCT----- ; cor=; Ncor= a 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 c 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 g 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 t 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0
MA0806.1_rc_shift1 (TBX4_rc)				; oligos_6nt_mkv3_m22 versus MA0806.1_rc (TBX4_rc); m=37/40; ncol2=8; w=8; offset=0; strand=R; shift=1; score=0.476752; -TcACACCT----- ; cor=; Ncor= a 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 0 c 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 0 g 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 0 t 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0 0
MA0803.1_rc_shift1 (TBX15_rc)				; oligos_6nt_mkv3_m22 versus MA0803.1_rc (TBX15_rc); m=38/40; ncol2=8; w=8; offset=0; strand=R; shift=1; score=0.447663; -TCACACCT----- ; cor=; Ncor= a 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 0 0 0 0 c 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 0 0 0 0 g 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 0 0 0 0 t 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0 0 0 0 0
MA0622.1_shift3 (Mlxip)				; oligos_6nt_mkv3_m22 versus MA0622.1 (Mlxip); m=39/40; ncol2=8; w=8; offset=2; strand=D; shift=3; score=0.438609; ---bCACGTGk--- ; cor=; Ncor= a 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 0 0 0 c 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 0 0 0 g 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 0 0 0 t 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0 0 0 0
MA0805.1_rc_shift1 (TBX1_rc)				; oligos_6nt_mkv3_m22 versus MA0805.1_rc (TBX1_rc); m=40/40; ncol2=8; w=8; offset=0; strand=R; shift=1; score=0.434157; -TCACACCT----- ; cor=; Ncor= a 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 0 0 c 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 0 0 g 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 0 0 t 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m7_shift2 (oligos_6nt_mkv3_m7oligos_6nt_mkv3_m7)				; oligos_6nt_mkv3_m7 (oligos_6nt_mkv3_m7oligos_6nt_mkv3_m7); m=0 (reference); ncol1=10; shift=2; ncol=14; --rvCAACTGyy-- ; Alignment reference a 0 0 207 175 0 590 590 0 0 0 68 118 0 0 c 0 0 86 189 590 0 0 590 0 0 193 160 0 0 g 0 0 225 175 0 0 0 0 0 590 143 138 0 0 t 0 0 72 51 0 0 0 0 590 0 186 174 0 0
MA0100.3_shift2 (MYB)				; oligos_6nt_mkv3_m7 versus MA0100.3 (MYB); m=1/35; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.978377; --mbCAACTGhm-- ; cor=; Ncor= a 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 c 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 g 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 t 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0
MA1472.1_shift2 (BHLHA15(var.2))				; oligos_6nt_mkv3_m7 versus MA1472.1 (BHLHA15(var.2)); m=2/35; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.781424; --avCAGCTGyy-- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0
MA1100.2_shift2 (ASCL1)				; oligos_6nt_mkv3_m7 versus MA1100.2 (ASCL1); m=3/35; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.776199; --rrCAGCTGcy-- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0
MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)				; oligos_6nt_mkv3_m7 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=4/35; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.77025; --csCAGCTGsg-- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0
MA0820.1_shift2 (FIGLA)				; oligos_6nt_mkv3_m7 versus MA0820.1 (FIGLA); m=5/35; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.769443; --wmCACCTGkw-- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0
MA1638.1_rc_shift2 (HAND2_rc)				; oligos_6nt_mkv3_m7 versus MA1638.1_rc (HAND2_rc); m=6/35; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.76865; --rvCATCTGkt-- ; cor=; Ncor= a 0 0 7783.0 8498.0 49.0 27962.0 23.0 85.0 4.0 70.0 3155.0 7120.0 0 0 c 0 0 6108.0 8878.0 29851.0 31.0 38.0 30144.0 647.0 132.0 6994.0 7463.0 0 0 g 0 0 10227.0 7690.0 149.0 2276.0 30.0 42.0 410.0 30062.0 11298.0 5564.0 0 0 t 0 0 6165.0 5217.0 234.0 14.0 30192.0 12.0 29222.0 19.0 8836.0 10136.0 0 0
MA0816.1_shift2 (Ascl2)				; oligos_6nt_mkv3_m7 versus MA0816.1 (Ascl2); m=7/35; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.766686; --arCAGCTGyy-- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0
MA0667.1_shift2 (MYF6)				; oligos_6nt_mkv3_m7 versus MA0667.1 (MYF6); m=8/35; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.756606; --AACArCTGTY-- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0
MA1558.1_rc_shift2 (SNAI1_rc)				; oligos_6nt_mkv3_m7 versus MA1558.1_rc (SNAI1_rc); m=9/35; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.741229; --yrCACCTGyh-- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0
MA1467.1_rc_shift2 (ATOH1(var.2)_rc)				; oligos_6nt_mkv3_m7 versus MA1467.1_rc (ATOH1(var.2)_rc); m=10/35; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.731423; --RACAGCTGTT-- ; cor=; Ncor= a 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0
MA1559.1_rc_shift2 (SNAI3_rc)				; oligos_6nt_mkv3_m7 versus MA1559.1_rc (SNAI3_rc); m=11/35; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.719772; --trCACCTGyt-- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0
MA0048.2_shift2 (NHLH1)				; oligos_6nt_mkv3_m7 versus MA0048.2 (NHLH1); m=12/35; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.715866; --cGCAGCTGCk-- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0
MA0691.1_shift2 (TFAP4)				; oligos_6nt_mkv3_m7 versus MA0691.1 (TFAP4); m=13/35; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.709702; --AwCAGCTGwT-- ; cor=; Ncor= a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0
MA0665.1_shift2 (MSC)				; oligos_6nt_mkv3_m7 versus MA0665.1 (MSC); m=14/35; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.703029; --AACAGCTGTT-- ; cor=; Ncor= a 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0
MA0521.1_rc_shift1 (Tcf12_rc)				; oligos_6nt_mkv3_m7 versus MA0521.1_rc (Tcf12_rc); m=15/35; ncol2=11; w=10; offset=-1; strand=R; shift=1; score=0.699619; -cwsCAGCTGYy-- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0
MA0103.3_shift2 (ZEB1)				; oligos_6nt_mkv3_m7 versus MA0103.3 (ZEB1); m=16/35; ncol2=11; w=10; offset=0; strand=D; shift=2; score=0.684128; --ssCACCTGsss- ; cor=; Ncor= a 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 c 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 g 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 t 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0
MA1648.1_shift2 (TCF12(var.2))				; oligos_6nt_mkv3_m7 versus MA1648.1 (TCF12(var.2)); m=17/35; ncol2=11; w=10; offset=0; strand=D; shift=2; score=0.65613; --ssCACCTGCys- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0
MA0522.3_shift2 (TCF3)				; oligos_6nt_mkv3_m7 versus MA0522.3 (TCF3); m=18/35; ncol2=11; w=10; offset=0; strand=D; shift=2; score= 0.6542; --svCACCTGCss- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0
MA0500.2_rc_shift1 (MYOG_rc)				; oligos_6nt_mkv3_m7 versus MA0500.2_rc (MYOG_rc); m=19/35; ncol2=12; w=10; offset=-1; strand=R; shift=1; score=0.640837; -sarCAGCTGyts- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0
MA1620.1_shift1 (Ptf1a(var.3))				; oligos_6nt_mkv3_m7 versus MA1620.1 (Ptf1a(var.3)); m=20/35; ncol2=12; w=10; offset=-1; strand=D; shift=1; score=0.634256; -rmaCACCTGtky- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0
MA1619.1_shift1 (Ptf1a(var.2))				; oligos_6nt_mkv3_m7 versus MA1619.1 (Ptf1a(var.2)); m=21/35; ncol2=12; w=10; offset=-1; strand=D; shift=1; score=0.632818; -rmaCAGCTGtky- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0
MA1641.1_rc_shift1 (MYF5_rc)				; oligos_6nt_mkv3_m7 versus MA1641.1_rc (MYF5_rc); m=22/35; ncol2=12; w=10; offset=-1; strand=R; shift=1; score=0.62678; -gvaCAGCTGtbc- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0
MA1524.1_shift1 (MSGN1)				; oligos_6nt_mkv3_m7 versus MA1524.1 (MSGN1); m=23/35; ncol2=12; w=10; offset=-1; strand=D; shift=1; score=0.593119; -srCCAwwTGkys- ; cor=; Ncor= a 0 1190.0 3096.0 663.0 0.0 6373.0 2424.0 3766.0 10.0 0.0 412.0 514.0 1388.0 0 c 0 2080.0 576.0 6373.0 6373.0 0.0 627.0 190.0 287.0 10.0 1132.0 3269.0 1976.0 0 g 0 1615.0 3277.0 1613.0 17.0 374.0 112.0 814.0 17.0 6373.0 3104.0 1503.0 1781.0 0 t 0 1488.0 408.0 726.0 0.0 0.0 3950.0 2607.0 6373.0 0.0 3269.0 3104.0 1228.0 0
MA1618.1_rc_shift0 (Ptf1a_rc)				; oligos_6nt_mkv3_m7 versus MA1618.1_rc (Ptf1a_rc); m=24/35; ncol2=13; w=10; offset=-2; strand=R; shift=0; score=0.592088; dmaaCATCTGtkh- ; cor=; Ncor= a 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 c 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 g 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 t 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0
MA0091.1_shift0 (TAL1::TCF3)				; oligos_6nt_mkv3_m7 versus MA0091.1 (TAL1::TCF3); m=25/35; ncol2=12; w=10; offset=-2; strand=D; shift=0; score=0.59143; mgAmCAKMTGkT-- ; cor=; Ncor= a 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 c 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 g 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 t 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0
MA1642.1_rc_shift1 (NEUROG2(var.2)_rc)				; oligos_6nt_mkv3_m7 versus MA1642.1_rc (NEUROG2(var.2)_rc); m=26/35; ncol2=13; w=10; offset=-1; strand=R; shift=1; score=0.579397; -brCCATCTGtyyy ; cor=; Ncor= a 0 7184.0 9704.0 4904.0 484.0 32515.0 275.0 2806.0 159.0 237.0 1750.0 4721.0 8378.0 7535.0 c 0 8709.0 7581.0 24998.0 33422.0 323.0 418.0 30392.0 301.0 317.0 8039.0 11114.0 10123.0 10813.0 g 0 9034.0 10441.0 2966.0 205.0 904.0 952.0 793.0 211.0 33559.0 8154.0 6467.0 6843.0 7353.0 t 0 9464.0 6665.0 1523.0 280.0 649.0 32746.0 400.0 33720.0 278.0 16448.0 12089.0 9047.0 8690.0
MA0830.2_shift1 (TCF4)				; oligos_6nt_mkv3_m7 versus MA0830.2 (TCF4); m=27/35; ncol2=13; w=10; offset=-1; strand=D; shift=1; score=0.577526; -cggCACCTGccss ; cor=; Ncor= a 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 c 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 g 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 t 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0
MA1109.1_rc_shift0 (NEUROD1_rc)				; oligos_6nt_mkv3_m7 versus MA1109.1_rc (NEUROD1_rc); m=28/35; ncol2=13; w=10; offset=-2; strand=R; shift=0; score=0.577185; syrCCATCTGtyc- ; cor=; Ncor= a 525.0 451.0 580.0 168.0 31.0 2157.0 21.0 90.0 18.0 12.0 47.0 298.0 566.0 0 c 628.0 599.0 418.0 1962.0 2231.0 19.0 77.0 2152.0 16.0 13.0 494.0 906.0 726.0 0 g 591.0 540.0 911.0 93.0 7.0 51.0 150.0 24.0 7.0 2240.0 452.0 323.0 429.0 0 t 538.0 692.0 373.0 59.0 13.0 55.0 2034.0 16.0 2241.0 17.0 1289.0 755.0 561.0 0
MA0499.2_shift1 (MYOD1)				; oligos_6nt_mkv3_m7 versus MA0499.2 (MYOD1); m=29/35; ncol2=13; w=10; offset=-1; strand=D; shift=1; score=0.575004; -cwgCACCTGTymy ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0
MA1631.1_shift1 (ASCL1(var.2))				; oligos_6nt_mkv3_m7 versus MA1631.1 (ASCL1(var.2)); m=30/35; ncol2=13; w=10; offset=-1; strand=D; shift=1; score=0.571687; -cdgCACCTGCysc ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0
MA1123.2_rc_shift1 (TWIST1_rc)				; oligos_6nt_mkv3_m7 versus MA1123.2_rc (TWIST1_rc); m=31/35; ncol2=13; w=10; offset=-1; strand=R; shift=1; score=0.562265; -avaCATCTGGwwt ; cor=; Ncor= a 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 c 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 g 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 t 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0
MA0745.2_shift1 (SNAI2)				; oligos_6nt_mkv3_m7 versus MA0745.2 (SNAI2); m=32/35; ncol2=13; w=10; offset=-1; strand=D; shift=1; score=0.559898; -aygCACCTGTmry ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0
MA1485.1_shift0 (FERD3L)				; oligos_6nt_mkv3_m7 versus MA1485.1 (FERD3L); m=33/35; ncol2=14; w=10; offset=-2; strand=D; shift=0; score=0.546849; GyrmCAGCTGTyAC ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0
MA1621.1_shift0 (Rbpjl)				; oligos_6nt_mkv3_m7 versus MA1621.1 (Rbpjl); m=34/35; ncol2=14; w=10; offset=-2; strand=D; shift=0; score=0.543627; svmaCACCTGtsyc ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0
MA1554.1_rc_shift0 (RFX7_rc)				; oligos_6nt_mkv3_m7 versus MA1554.1_rc (RFX7_rc); m=35/35; ncol2=9; w=7; offset=-2; strand=R; shift=0; score=0.409688; rtrGcAACg----- ; cor=; Ncor= a 109.0 27.0 164.0 19.0 38.0 279.0 279.0 0.0 58.0 0 0 0 0 0 c 27.0 104.0 13.0 35.0 279.0 0.0 0.0 279.0 63.0 0 0 0 0 0 g 106.0 22.0 115.0 279.0 0.0 27.0 24.0 2.0 164.0 0 0 0 0 0 t 37.0 279.0 0.0 2.0 95.0 0.0 0.0 0.0 0.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m18_shift0 (oligos_6nt_mkv3_m18oligos_6nt_mkv3_m18)				; oligos_6nt_mkv3_m18 (oligos_6nt_mkv3_m18oligos_6nt_mkv3_m18); m=0 (reference); ncol1=12; shift=0; ncol=18; yymCATTCCAkt------ ; Alignment reference a 63 63 302 11 440 2 11 7 2 334 64 82 0 0 0 0 0 0 c 125 155 126 400 3 3 7 434 441 34 90 102 0 0 0 0 0 0 g 86 68 15 14 8 4 4 1 0 13 123 101 0 0 0 0 0 0 t 179 167 10 28 2 444 431 11 10 72 176 168 0 0 0 0 0 0
MA0809.2_shift0 (TEAD4)				; oligos_6nt_mkv3_m18 versus MA0809.2 (TEAD4); m=1/8; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.972595; ycACATTCCAgs------ ; cor=; Ncor= a 18932.0 17306.0 61263.0 7543.0 74797.0 965.0 2673.0 1366.0 1314.0 61802.0 16617.0 19272.0 0 0 0 0 0 0 c 22343.0 26577.0 2414.0 66205.0 1218.0 1129.0 1176.0 72555.0 75066.0 3874.0 13864.0 20301.0 0 0 0 0 0 0 g 15111.0 15427.0 11265.0 3295.0 569.0 1025.0 2100.0 1580.0 212.0 1191.0 32220.0 22630.0 0 0 0 0 0 0 t 21700.0 18776.0 3144.0 1043.0 1502.0 74967.0 72137.0 2585.0 1494.0 11219.0 15385.0 15883.0 0 0 0 0 0 0
MA1121.1_shift0 (TEAD2)				; oligos_6nt_mkv3_m18 versus MA1121.1 (TEAD2); m=2/8; ncol2=13; w=12; offset=0; strand=D; shift=0; score=0.890023; hcACATTCCwgsc----- ; cor=; Ncor= a 137.0 88.0 441.0 39.0 517.0 2.0 15.0 8.0 8.0 263.0 112.0 111.0 109.0 0 0 0 0 0 c 145.0 238.0 17.0 478.0 5.0 10.0 8.0 500.0 513.0 60.0 111.0 172.0 221.0 0 0 0 0 0 g 112.0 81.0 70.0 14.0 11.0 6.0 9.0 10.0 3.0 56.0 207.0 147.0 117.0 0 0 0 0 0 t 148.0 135.0 14.0 11.0 9.0 524.0 510.0 24.0 18.0 163.0 112.0 112.0 95.0 0 0 0 0 0
MA0090.3_shift0 (TEAD1)				; oligos_6nt_mkv3_m18 versus MA0090.3 (TEAD1); m=3/8; ncol2=13; w=12; offset=0; strand=D; shift=0; score=0.875101; hyACATTCCAGsm----- ; cor=; Ncor= a 17689.0 16651.0 58030.0 6096.0 68106.0 535.0 4976.0 1348.0 702.0 57190.0 9124.0 13252.0 19194.0 0 0 0 0 0 c 19272.0 22059.0 1248.0 61276.0 646.0 700.0 622.0 66953.0 67635.0 1729.0 6215.0 20002.0 21358.0 0 0 0 0 0 g 14429.0 12053.0 9179.0 1923.0 946.0 646.0 1210.0 765.0 374.0 2051.0 47856.0 26525.0 16344.0 0 0 0 0 0 t 19008.0 19635.0 1941.0 1103.0 700.0 68517.0 63590.0 1332.0 1687.0 9428.0 7203.0 10619.0 13502.0 0 0 0 0 0
MA0808.1_shift2 (TEAD3)				; oligos_6nt_mkv3_m18 versus MA0808.1 (TEAD3); m=4/8; ncol2=8; w=8; offset=2; strand=D; shift=2; score=0.634584; --rCATTCCw-------- ; cor=; Ncor= a 0 0 12530.0 2524.0 21444.0 0.0 4566.0 0.0 0.0 21444.0 0 0 0 0 0 0 0 0 c 0 0 66.0 18920.0 0.0 0.0 23.0 21444.0 21444.0 1039.0 0 0 0 0 0 0 0 0 g 0 0 8913.0 441.0 0.0 0.0 969.0 0.0 0.0 8654.0 0 0 0 0 0 0 0 0 t 0 0 1109.0 0.0 0.0 21444.0 16878.0 0.0 4.0 13663.0 0 0 0 0 0 0 0 0
MA0624.1_shift2 (NFATC1)				; oligos_6nt_mkv3_m18 versus MA0624.1 (NFATC1); m=5/8; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.611846; --wttTTCCryt------ ; cor=; Ncor= a 0 0 383.0 226.0 158.0 19.0 21.0 14.0 9.0 516.0 230.0 230.0 0 0 0 0 0 0 c 0 0 134.0 193.0 60.0 35.0 29.0 971.0 967.0 45.0 262.0 227.0 0 0 0 0 0 0 g 0 0 167.0 189.0 122.0 7.0 15.0 8.0 5.0 357.0 126.0 194.0 0 0 0 0 0 0 t 0 0 316.0 392.0 660.0 939.0 935.0 7.0 18.0 83.0 383.0 349.0 0 0 0 0 0 0
MA0625.1_shift2 (NFATC3)				; oligos_6nt_mkv3_m18 versus MA0625.1 (NFATC3); m=6/8; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.590172; --wtTTTCCryt------ ; cor=; Ncor= a 0 0 421.0 179.0 117.0 14.0 3.0 36.0 8.0 552.0 173.0 215.0 0 0 0 0 0 0 c 0 0 93.0 181.0 40.0 10.0 23.0 933.0 959.0 39.0 251.0 211.0 0 0 0 0 0 0 g 0 0 139.0 168.0 73.0 5.0 9.0 1.0 23.0 342.0 133.0 173.0 0 0 0 0 0 0 t 0 0 348.0 472.0 770.0 971.0 966.0 30.0 10.0 67.0 443.0 400.0 0 0 0 0 0 0
MA1525.1_rc_shift2 (NFATC4_rc)				; oligos_6nt_mkv3_m18 versus MA1525.1_rc (NFATC4_rc); m=7/8; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.589689; --wkTTTCCryt------ ; cor=; Ncor= a 0 0 2239.0 1292.0 259.0 0.0 0.0 0.0 0.0 2816.0 843.0 819.0 0 0 0 0 0 0 c 0 0 348.0 1789.0 127.0 0.0 0.0 4349.0 4349.0 0.0 2369.0 963.0 0 0 0 0 0 0 g 0 0 632.0 3276.0 1084.0 0.0 39.0 0.0 0.0 1534.0 329.0 916.0 0 0 0 0 0 0 t 0 0 1132.0 4349.0 4349.0 4349.0 4349.0 0.0 0.0 95.0 4349.0 1652.0 0 0 0 0 0 0
MA0752.1_shift1 (ZNF410)				; oligos_6nt_mkv3_m18 versus MA0752.1 (ZNF410); m=8/8; ncol2=17; w=11; offset=1; strand=D; shift=1; score=0.428845; -tmCATCCCATAATAhtc ; cor=; Ncor= a 0 661.0 1715.0 1.0 3985.0 50.0 69.0 12.0 0.0 3985.0 0.0 3987.0 3983.0 4.0 3930.0 1069.0 172.0 798.0 c 0 700.0 1872.0 3641.0 2.0 33.0 3949.0 3986.0 3986.0 5.0 9.0 8.0 2.0 6.0 17.0 1285.0 818.0 2628.0 g 0 950.0 399.0 0.0 1.0 124.0 1.0 0.0 1.0 1.0 0.0 0.0 3.0 0.0 43.0 619.0 788.0 93.0 t 0 1677.0 2.0 370.0 4.0 3827.0 4.0 0.0 0.0 2.0 3987.0 0.0 1.0 3984.0 24.0 1015.0 2274.0 520.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m45_shift4 (oligos_6nt_mkv3_m45oligos_6nt_mkv3_m45)				; oligos_6nt_mkv3_m45 (oligos_6nt_mkv3_m45oligos_6nt_mkv3_m45); m=0 (reference); ncol1=10; shift=4; ncol=17; ----krGGATTAvr--- ; Alignment reference a 0 0 0 0 37 39 0 4 150 2 1 152 40 44 0 0 0 c 0 0 0 0 34 18 7 1 0 1 0 2 40 34 0 0 0 g 0 0 0 0 39 67 146 142 1 0 1 0 51 47 0 0 0 t 0 0 0 0 44 30 1 7 3 151 152 0 23 29 0 0 0
MA0648.1_rc_shift4 (GSC_rc)				; oligos_6nt_mkv3_m45 versus MA0648.1_rc (GSC_rc); m=1/19; ncol2=10; w=10; offset=0; strand=R; shift=4; score=0.967516; ----rsGGATTArs--- ; cor=; Ncor= a 0 0 0 0 2168.0 1115.0 1099.0 787.0 6081.0 0.0 89.0 6081.0 1688.0 882.0 0 0 0 c 0 0 0 0 619.0 1732.0 828.0 452.0 144.0 0.0 176.0 0.0 553.0 2039.0 0 0 0 g 0 0 0 0 2197.0 2398.0 6081.0 6081.0 25.0 0.0 71.0 54.0 2885.0 1912.0 0 0 0 t 0 0 0 0 1097.0 836.0 315.0 416.0 0.0 6081.0 6081.0 0.0 955.0 1249.0 0 0 0
MA0891.1_rc_shift4 (GSC2_rc)				; oligos_6nt_mkv3_m45 versus MA0891.1_rc (GSC2_rc); m=2/19; ncol2=10; w=10; offset=0; strand=R; shift=4; score=0.962215; ----dsgGATTArg--- ; cor=; Ncor= a 0 0 0 0 525.0 444.0 439.0 204.0 2016.0 132.0 201.0 2016.0 630.0 427.0 0 0 0 c 0 0 0 0 168.0 698.0 422.0 179.0 145.0 0.0 56.0 0.0 190.0 442.0 0 0 0 g 0 0 0 0 814.0 668.0 2016.0 2016.0 41.0 11.0 87.0 0.0 839.0 686.0 0 0 0 t 0 0 0 0 509.0 205.0 182.0 255.0 0.0 2016.0 2016.0 116.0 356.0 461.0 0 0 0
MA0714.1_rc_shift5 (PITX3_rc)				; oligos_6nt_mkv3_m45 versus MA0714.1_rc (PITX3_rc); m=3/19; ncol2=9; w=9; offset=1; strand=R; shift=5; score=0.883454; -----gGGATTArb--- ; cor=; Ncor= a 0 0 0 0 0 1195.0 968.0 236.0 6253.0 0.0 158.0 6253.0 3354.0 1069.0 0 0 0 c 0 0 0 0 0 970.0 239.0 166.0 1101.0 15.0 260.0 9.0 806.0 1634.0 0 0 0 g 0 0 0 0 0 2950.0 6253.0 6253.0 138.0 0.0 32.0 51.0 2899.0 1924.0 0 0 0 t 0 0 0 0 0 1138.0 227.0 318.0 262.0 6253.0 6253.0 493.0 1602.0 1626.0 0 0 0
MA0712.2_shift3 (OTX2)				; oligos_6nt_mkv3_m45 versus MA0712.2 (OTX2); m=4/19; ncol2=12; w=10; offset=-1; strand=D; shift=3; score=0.825178; ---wdrGGATTAraw-- ; cor=; Ncor= a 0 0 0 42531.0 39166.0 37155.0 5435.0 2918.0 116411.0 765.0 1913.0 114798.0 30848.0 39802.0 36006.0 0 0 c 0 0 0 24445.0 17328.0 5322.0 827.0 1620.0 2220.0 598.0 1771.0 636.0 12347.0 25479.0 20623.0 0 0 g 0 0 0 22124.0 31825.0 55814.0 111741.0 113842.0 706.0 787.0 1407.0 1302.0 52479.0 27153.0 29814.0 0 0 t 0 0 0 31579.0 32360.0 22388.0 2676.0 2299.0 1342.0 118529.0 115588.0 3943.0 25005.0 28245.0 34236.0 0 0
MA0682.2_rc_shift5 (PITX1_rc)				; oligos_6nt_mkv3_m45 versus MA0682.2_rc (PITX1_rc); m=5/19; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.795587; -----gGGATTAr---- ; cor=; Ncor= a 0 0 0 0 0 2113.0 547.0 141.0 10531.0 0.0 0.0 10531.0 4432.0 0 0 0 0 c 0 0 0 0 0 1876.0 134.0 0.0 1039.0 0.0 0.0 0.0 2382.0 0 0 0 0 g 0 0 0 0 0 4194.0 10531.0 10531.0 0.0 0.0 0.0 0.0 6099.0 0 0 0 0 t 0 0 0 0 0 2348.0 68.0 143.0 0.0 10531.0 10531.0 0.0 2898.0 0 0 0 0
MA1547.1_rc_shift5 (PITX2_rc)				; oligos_6nt_mkv3_m45 versus MA1547.1_rc (PITX2_rc); m=6/19; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.793292; -----gGGATTAd---- ; cor=; Ncor= a 0 0 0 0 0 1371.0 364.0 1455.0 10956.0 0.0 0.0 10956.0 5436.0 0 0 0 0 c 0 0 0 0 0 1692.0 248.0 0.0 147.0 0.0 17.0 0.0 4140.0 0 0 0 0 g 0 0 0 0 0 5773.0 10956.0 10956.0 0.0 0.0 0.0 0.0 5519.0 0 0 0 0 t 0 0 0 0 0 2119.0 197.0 0.0 0.0 10956.0 10956.0 259.0 6050.0 0 0 0 0
MA0711.1_rc_shift5 (OTX1_rc)				; oligos_6nt_mkv3_m45 versus MA0711.1_rc (OTX1_rc); m=7/19; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.765421; -----sgGATTAr---- ; cor=; Ncor= a 0 0 0 0 0 4787.0 3363.0 378.0 23441.0 0.0 544.0 23441.0 8636.0 0 0 0 0 c 0 0 0 0 0 10599.0 8662.0 659.0 3160.0 0.0 254.0 0.0 3186.0 0 0 0 0 g 0 0 0 0 0 6182.0 23441.0 23441.0 0.0 0.0 0.0 90.0 6501.0 0 0 0 0 t 0 0 0 0 0 1873.0 789.0 647.0 243.0 23441.0 23441.0 745.0 5118.0 0 0 0 0
MA0719.1_rc_shift5 (RHOXF1_rc)				; oligos_6nt_mkv3_m45 versus MA0719.1_rc (RHOXF1_rc); m=8/19; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.710668; -----kGGmTyAw---- ; cor=; Ncor= a 0 0 0 0 0 2123.0 2275.0 0.0 7376.0 0.0 1367.0 10916.0 3193.0 0 0 0 0 c 0 0 0 0 0 2117.0 0.0 0.0 3540.0 0.0 5373.0 478.0 1855.0 0 0 0 0 g 0 0 0 0 0 3453.0 10916.0 10916.0 0.0 0.0 0.0 0.0 2644.0 0 0 0 0 t 0 0 0 0 0 3223.0 0.0 0.0 0.0 10916.0 5543.0 2837.0 3224.0 0 0 0 0
MA1480.1_rc_shift5 (DPRX_rc)				; oligos_6nt_mkv3_m45 versus MA1480.1_rc (DPRX_rc); m=9/19; ncol2=10; w=9; offset=1; strand=R; shift=5; score=0.707712; -----srGATTAkCt-- ; cor=; Ncor= a 0 0 0 0 0 1802.0 3231.0 350.0 8562.0 0.0 1071.0 8562.0 370.0 437.0 945.0 0 0 c 0 0 0 0 0 2269.0 754.0 222.0 198.0 0.0 1121.0 0.0 110.0 8562.0 1509.0 0 0 g 0 0 0 0 0 2970.0 8562.0 8562.0 0.0 0.0 1730.0 0.0 2761.0 1011.0 1411.0 0 0 t 0 0 0 0 0 1521.0 303.0 1014.0 0.0 8562.0 8562.0 0.0 5801.0 936.0 4696.0 0 0
MA0467.1_shift2 (Crx)				; oligos_6nt_mkv3_m45 versus MA0467.1 (Crx); m=10/19; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.688985; --aAGrGGATTAr---- ; cor=; Ncor= a 0 0 1207.0 1454.0 347.0 943.0 515.0 0.0 1632.0 0.0 0.0 1995.0 544.0 0 0 0 0 c 0 0 297.0 43.0 55.0 222.0 0.0 0.0 465.0 0.0 29.0 0.0 52.0 0 0 0 0 g 0 0 458.0 417.0 1470.0 823.0 1574.0 2097.0 0.0 0.0 0.0 0.0 1326.0 0 0 0 0 t 0 0 135.0 183.0 225.0 109.0 8.0 0.0 0.0 2097.0 2068.0 102.0 175.0 0 0 0 0
MA0035.4_rc_shift4 (GATA1_rc)				; oligos_6nt_mkv3_m45 versus MA0035.4_rc (GATA1_rc); m=11/19; ncol2=11; w=10; offset=0; strand=R; shift=4; score=0.654707; ----wwAGATWAGaw-- ; cor=; Ncor= a 0 0 0 0 24586.0 19739.0 60641.0 1853.0 67766.0 1998.0 20570.0 69267.0 2744.0 28923.0 23455.0 0 0 c 0 0 0 0 9325.0 14358.0 765.0 1471.0 618.0 988.0 856.0 652.0 2712.0 11088.0 13955.0 0 0 g 0 0 0 0 15261.0 11186.0 3025.0 65937.0 1238.0 1292.0 710.0 595.0 62419.0 14489.0 12209.0 0 0 t 0 0 0 0 22656.0 26545.0 7397.0 2567.0 2206.0 67550.0 49692.0 1314.0 3953.0 17328.0 22209.0 0 0
MA0724.1_shift4 (VENTX)				; oligos_6nt_mkv3_m45 versus MA0724.1 (VENTX); m=12/19; ncol2=9; w=9; offset=0; strand=D; shift=4; score=0.644902; ----AmCrATTAr---- ; cor=; Ncor= a 0 0 0 0 17344.0 9981.0 562.0 7795.0 23923.0 0.0 0.0 23923.0 8820.0 0 0 0 0 c 0 0 0 0 983.0 13942.0 23923.0 5650.0 203.0 0.0 0.0 0.0 706.0 0 0 0 0 g 0 0 0 0 1934.0 6941.0 0.0 16128.0 0.0 0.0 0.0 0.0 15103.0 0 0 0 0 t 0 0 0 0 3662.0 5912.0 3964.0 626.0 74.0 23923.0 23923.0 0.0 2189.0 0 0 0 0
MA0875.1_shift5 (BARX1)				; oligos_6nt_mkv3_m45 versus MA0875.1 (BARX1); m=13/19; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.57511; -----vcmATTAr---- ; cor=; Ncor= a 0 0 0 0 0 1872.0 590.0 3339.0 6805.0 0.0 0.0 6805.0 1917.0 0 0 0 0 c 0 0 0 0 0 1821.0 5138.0 1992.0 207.0 0.0 0.0 0.0 1391.0 0 0 0 0 g 0 0 0 0 0 2236.0 246.0 1386.0 192.0 0.0 0.0 0.0 2420.0 0 0 0 0 t 0 0 0 0 0 877.0 1667.0 87.0 0.0 6805.0 6805.0 0.0 1077.0 0 0 0 0
MA0876.1_shift5 (BSX)				; oligos_6nt_mkv3_m45 versus MA0876.1 (BSX); m=14/19; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.568083; -----symATTAv---- ; cor=; Ncor= a 0 0 0 0 0 1449.0 688.0 4036.0 8832.0 0.0 96.0 8832.0 2770.0 0 0 0 0 c 0 0 0 0 0 3929.0 5585.0 2483.0 194.0 0.0 0.0 0.0 2369.0 0 0 0 0 g 0 0 0 0 0 2290.0 103.0 2197.0 1078.0 0.0 0.0 0.0 2417.0 0 0 0 0 t 0 0 0 0 0 1164.0 3247.0 116.0 66.0 8832.0 8832.0 0.0 1276.0 0 0 0 0
MA0883.1_shift0 (Dmbx1)				; oligos_6nt_mkv3_m45 versus MA0883.1 (Dmbx1); m=15/19; ncol2=17; w=10; offset=-4; strand=D; shift=0; score=0.557473; wdrwmmGGATTArkbww ; cor=; Ncor= a 34.0 28.0 49.0 49.0 25.0 28.0 6.0 0.0 94.0 0.0 1.0 97.0 40.0 9.0 15.0 30.0 37.0 c 13.0 8.0 8.0 8.0 36.0 50.0 1.0 1.0 6.0 0.0 1.0 0.0 5.0 11.0 28.0 20.0 12.0 g 12.0 37.0 31.0 13.0 18.0 20.0 93.0 99.0 0.0 0.0 0.0 0.0 35.0 37.0 30.0 19.0 15.0 t 41.0 27.0 12.0 30.0 21.0 3.0 0.0 0.0 0.0 99.0 98.0 3.0 20.0 42.0 27.0 30.0 36.0
MA0056.2_rc_shift0 (MZF1_rc)				; oligos_6nt_mkv3_m45 versus MA0056.2_rc (MZF1_rc); m=16/19; ncol2=13; w=9; offset=-4; strand=R; shift=0; score=0.502444; rdgTGGGGATTwk---- ; cor=; Ncor= a 2501.0 2586.0 2019.0 1111.0 369.0 154.0 114.0 93.0 7982.0 282.0 372.0 2278.0 2033.0 0 0 0 0 c 1773.0 1482.0 1523.0 484.0 83.0 58.0 54.0 100.0 98.0 385.0 999.0 1543.0 1808.0 0 0 0 0 g 2206.0 2078.0 3007.0 611.0 7673.0 7919.0 7939.0 7949.0 56.0 426.0 1016.0 1944.0 2260.0 0 0 0 0 t 1762.0 2096.0 1693.0 6036.0 117.0 111.0 135.0 100.0 106.0 7149.0 5855.0 2477.0 2141.0 0 0 0 0
MA0151.1_shift8 (Arid3a)				; oligos_6nt_mkv3_m45 versus MA0151.1 (Arid3a); m=17/19; ncol2=6; w=6; offset=4; strand=D; shift=8; score=0.481202; --------ATyAAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 27.0 0.0 1.0 27.0 27.0 20.0 0 0 0 c 0 0 0 0 0 0 0 0 0.0 0.0 9.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 0 0 0 t 0 0 0 0 0 0 0 0 0.0 27.0 17.0 0.0 0.0 6.0 0 0 0
MA0884.1_rc_shift5 (DUXA_rc)				; oligos_6nt_mkv3_m45 versus MA0884.1_rc (DUXA_rc); m=18/19; ncol2=13; w=9; offset=1; strand=R; shift=5; score=0.479368; -----yTGATTarrTya ; cor=; Ncor= a 0 0 0 0 0 189.0 92.0 108.0 1014.0 7.0 22.0 1014.0 417.0 620.0 5.0 12.0 1014.0 c 0 0 0 0 0 283.0 52.0 3.0 5.0 10.0 47.0 116.0 193.0 125.0 11.0 359.0 111.0 g 0 0 0 0 0 178.0 29.0 1014.0 1.0 7.0 56.0 344.0 392.0 394.0 6.0 5.0 285.0 t 0 0 0 0 0 364.0 1014.0 0.0 0.0 1014.0 1014.0 23.0 12.0 136.0 1014.0 655.0 241.0
MA0468.1_rc_shift6 (DUX4_rc)				; oligos_6nt_mkv3_m45 versus MA0468.1_rc (DUX4_rc); m=19/19; ncol2=11; w=8; offset=2; strand=R; shift=6; score=0.438407; ------TGATTrrrTTA ; cor=; Ncor= a 0 0 0 0 0 0 4419.0 809.0 38217.0 0.0 50.0 18139.0 16758.0 19312.0 0.0 0.0 27446.0 c 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 6127.0 4981.0 2002.0 0.0 1216.0 979.0 g 0 0 0 0 0 0 0.0 37408.0 0.0 0.0 2889.0 13951.0 16478.0 11675.0 0.0 0.0 2495.0 t 0 0 0 0 0 0 33798.0 0.0 0.0 38217.0 35278.0 0.0 0.0 5228.0 38217.0 37001.0 7297.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m4_shift5 (oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4)				; oligos_7nt_mkv4_m4 (oligos_7nt_mkv4_m4oligos_7nt_mkv4_m4); m=0 (reference); ncol1=12; shift=5; ncol=19; -----ksTGACTCAtcs-- ; Alignment reference a 0 0 0 0 0 100 105 3 10 441 17 7 19 435 17 109 87 0 0 c 0 0 0 0 0 89 136 1 6 3 395 3 422 6 93 136 146 0 0 g 0 0 0 0 0 147 185 5 419 2 25 6 7 4 111 104 139 0 0 t 0 0 0 0 0 113 23 440 14 3 12 433 1 4 228 100 77 0 0
MA1130.1_rc_shift5 (FOSL2::JUN_rc)				; oligos_7nt_mkv4_m4 versus MA1130.1_rc (FOSL2::JUN_rc); m=1/32; ncol2=12; w=12; offset=0; strand=R; shift=5; score=0.965664; -----krTGACTCAymm-- ; cor=; Ncor= a 0 0 0 0 0 209.0 589.0 1.0 1.0 998.0 58.0 29.0 158.0 998.0 55.0 269.0 268.0 0 0 c 0 0 0 0 0 180.0 93.0 1.0 1.0 1.0 698.0 1.0 840.0 1.0 282.0 338.0 295.0 0 0 g 0 0 0 0 0 341.0 299.0 0.0 979.0 1.0 141.0 123.0 1.0 1.0 121.0 179.0 248.0 0 0 t 0 0 0 0 0 269.0 19.0 998.0 20.0 1.0 103.0 847.0 1.0 1.0 542.0 214.0 189.0 0 0
MA1134.1_shift5 (FOS::JUNB)				; oligos_7nt_mkv4_m4 versus MA1134.1 (FOS::JUNB); m=2/32; ncol2=12; w=12; offset=0; strand=D; shift=5; score=0.902131; -----krTGAsTCAymv-- ; cor=; Ncor= a 0 0 0 0 0 174.0 593.0 1.0 1.0 965.0 48.0 1.0 27.0 998.0 7.0 275.0 283.0 0 0 c 0 0 0 0 0 168.0 105.0 1.0 1.0 30.0 309.0 1.0 971.0 1.0 284.0 363.0 304.0 0 0 g 0 0 0 0 0 372.0 267.0 1.0 868.0 1.0 618.0 3.0 1.0 1.0 51.0 178.0 256.0 0 0 t 0 0 0 0 0 286.0 36.0 998.0 131.0 4.0 25.0 996.0 1.0 1.0 658.0 184.0 156.0 0 0
MA1141.1_rc_shift4 (FOS::JUND_rc)				; oligos_7nt_mkv4_m4 versus MA1141.1_rc (FOS::JUND_rc); m=3/32; ncol2=13; w=12; offset=-1; strand=R; shift=4; score=0.895205; ----bkrTGACTCAymm-- ; cor=; Ncor= a 0 0 0 0 180.0 185.0 612.0 0.0 0.0 999.0 19.0 15.0 129.0 999.0 38.0 263.0 258.0 0 0 c 0 0 0 0 292.0 195.0 77.0 0.0 0.0 0.0 867.0 0.0 871.0 0.0 266.0 389.0 315.0 0 0 g 0 0 0 0 264.0 370.0 290.0 0.0 970.0 0.0 40.0 91.0 0.0 1.0 104.0 167.0 244.0 0 0 t 0 0 0 0 264.0 250.0 21.0 999.0 29.0 0.0 75.0 894.0 0.0 0.0 593.0 182.0 183.0 0 0
MA0477.2_shift4 (FOSL1)				; oligos_7nt_mkv4_m4 versus MA0477.2 (FOSL1); m=4/32; ncol2=13; w=12; offset=-1; strand=D; shift=4; score=0.893924; ----draTGACTCAthy-- ; cor=; Ncor= a 0 0 0 0 14979.0 15921.0 35056.0 260.0 515.0 56806.0 2557.0 1060.0 3133.0 56408.0 2716.0 14671.0 13956.0 0 0 c 0 0 0 0 12491.0 11018.0 6703.0 460.0 301.0 287.0 43918.0 163.0 53711.0 344.0 10399.0 15640.0 17637.0 0 0 g 0 0 0 0 14848.0 16855.0 13127.0 183.0 54619.0 286.0 8615.0 598.0 278.0 566.0 6533.0 12314.0 11065.0 0 0 t 0 0 0 0 15363.0 13887.0 2795.0 56778.0 2246.0 302.0 2591.0 55860.0 559.0 363.0 38033.0 15056.0 15023.0 0 0
MA1634.1_shift5 (BATF)				; oligos_7nt_mkv4_m4 versus MA1634.1 (BATF); m=5/32; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.89324; -----waTGACTCAth--- ; cor=; Ncor= a 0 0 0 0 0 13555.0 22575.0 483.0 1139.0 45946.0 2051.0 1130.0 4742.0 45316.0 8146.0 16139.0 0 0 0 c 0 0 0 0 0 5742.0 8931.0 355.0 570.0 250.0 37333.0 306.0 40279.0 431.0 7566.0 12048.0 0 0 0 g 0 0 0 0 0 11492.0 8627.0 283.0 40617.0 341.0 5573.0 836.0 711.0 507.0 9681.0 5919.0 0 0 0 t 0 0 0 0 0 16219.0 6875.0 45887.0 4682.0 471.0 2051.0 44736.0 1276.0 754.0 21615.0 12902.0 0 0 0
MA0462.2_shift5 (BATF::JUN)				; oligos_7nt_mkv4_m4 versus MA0462.2 (BATF::JUN); m=6/32; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.893076; -----waTGACTCAth--- ; cor=; Ncor= a 0 0 0 0 0 10765.0 18789.0 367.0 834.0 37280.0 1399.0 755.0 3955.0 36854.0 6299.0 13407.0 0 0 0 c 0 0 0 0 0 4762.0 7260.0 275.0 400.0 204.0 31168.0 241.0 32770.0 318.0 6105.0 9668.0 0 0 0 g 0 0 0 0 0 9317.0 6729.0 182.0 33135.0 350.0 4188.0 539.0 522.0 424.0 7745.0 4923.0 0 0 0 t 0 0 0 0 0 13310.0 5376.0 37330.0 3785.0 320.0 1399.0 36619.0 907.0 558.0 18005.0 10156.0 0 0 0
MA1128.1_shift4 (FOSL1::JUN)				; oligos_7nt_mkv4_m4 versus MA1128.1 (FOSL1::JUN); m=7/32; ncol2=13; w=12; offset=-1; strand=D; shift=4; score=0.891803; ----kkrTGACTCAtmm-- ; cor=; Ncor= a 0 0 0 0 208.0 172.0 602.0 1.0 3.0 994.0 26.0 33.0 159.0 984.0 57.0 296.0 277.0 0 0 c 0 0 0 0 246.0 159.0 89.0 2.0 2.0 2.0 826.0 2.0 835.0 4.0 245.0 308.0 289.0 0 0 g 0 0 0 0 253.0 380.0 283.0 1.0 957.0 2.0 51.0 140.0 2.0 9.0 119.0 173.0 237.0 0 0 t 0 0 0 0 293.0 289.0 26.0 996.0 38.0 3.0 97.0 826.0 4.0 4.0 579.0 223.0 196.0 0 0
MA0835.2_shift5 (BATF3)				; oligos_7nt_mkv4_m4 versus MA0835.2 (BATF3); m=8/32; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.886216; -----waTGACTCAtw--- ; cor=; Ncor= a 0 0 0 0 0 3609.0 6137.0 132.0 245.0 11670.0 408.0 267.0 1248.0 11529.0 2334.0 4521.0 0 0 0 c 0 0 0 0 0 1245.0 2106.0 59.0 62.0 92.0 10589.0 79.0 10347.0 84.0 1664.0 2733.0 0 0 0 g 0 0 0 0 0 2608.0 1831.0 37.0 10420.0 87.0 560.0 117.0 88.0 117.0 2249.0 1255.0 0 0 0 t 0 0 0 0 0 4503.0 1891.0 11737.0 1238.0 116.0 408.0 11502.0 282.0 235.0 5718.0 3456.0 0 0 0
MA1137.1_shift4 (FOSL1::JUNB)				; oligos_7nt_mkv4_m4 versus MA1137.1 (FOSL1::JUNB); m=9/32; ncol2=13; w=12; offset=-1; strand=D; shift=4; score=0.880765; ----ykrTGAcTMAtmc-- ; cor=; Ncor= a 0 0 0 0 237.0 216.0 566.0 23.0 36.0 917.0 63.0 59.0 271.0 904.0 53.0 300.0 247.0 0 0 c 0 0 0 0 269.0 146.0 100.0 16.0 21.0 20.0 626.0 23.0 683.0 21.0 225.0 298.0 300.0 0 0 g 0 0 0 0 195.0 376.0 287.0 16.0 880.0 21.0 198.0 115.0 9.0 38.0 170.0 204.0 223.0 0 0 t 0 0 0 0 300.0 263.0 47.0 945.0 63.0 42.0 113.0 803.0 37.0 37.0 552.0 198.0 230.0 0 0
MA0491.2_shift4 (JUND)				; oligos_7nt_mkv4_m4 versus MA0491.2 (JUND); m=10/32; ncol2=13; w=12; offset=-1; strand=D; shift=4; score=0.878384; ----wraTGACTCAThh-- ; cor=; Ncor= a 0 0 0 0 28467.0 29234.0 70166.0 644.0 1365.0 103797.0 4634.0 2053.0 4915.0 103420.0 2796.0 27969.0 28212.0 0 0 c 0 0 0 0 21965.0 19712.0 10173.0 757.0 873.0 650.0 76028.0 496.0 98628.0 751.0 12025.0 28250.0 29793.0 0 0 g 0 0 0 0 25006.0 31347.0 20586.0 443.0 99787.0 573.0 20633.0 1147.0 953.0 965.0 7908.0 22249.0 19236.0 0 0 t 0 0 0 0 30507.0 25652.0 5020.0 104101.0 3920.0 925.0 4650.0 102249.0 1449.0 809.0 83216.0 27477.0 28704.0 0 0
MA0490.2_shift4 (JUNB)				; oligos_7nt_mkv4_m4 versus MA0490.2 (JUNB); m=11/32; ncol2=13; w=12; offset=-1; strand=D; shift=4; score=0.874781; ----wdATGACTCATwh-- ; cor=; Ncor= a 0 0 0 0 22772.0 23561.0 56607.0 538.0 770.0 78101.0 4755.0 1999.0 5243.0 77675.0 3722.0 21544.0 21137.0 0 0 c 0 0 0 0 16583.0 15807.0 7817.0 654.0 550.0 523.0 59784.0 289.0 73199.0 588.0 8876.0 19230.0 20653.0 0 0 g 0 0 0 0 18150.0 20403.0 11566.0 322.0 74757.0 550.0 10519.0 913.0 617.0 900.0 7508.0 16491.0 15068.0 0 0 t 0 0 0 0 22351.0 20085.0 3866.0 78342.0 3779.0 682.0 4798.0 76655.0 797.0 693.0 59750.0 22591.0 22998.0 0 0
MA0476.1_shift5 (FOS)				; oligos_7nt_mkv4_m4 versus MA0476.1 (FOS); m=12/32; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.874371; -----dvTGAsTCATb--- ; cor=; Ncor= a 0 0 0 0 0 7879.0 7475.0 0.0 0.0 29396.0 998.0 0.0 0.0 29396.0 258.0 4006.0 0 0 0 c 0 0 0 0 0 712.0 10177.0 0.0 0.0 0.0 14079.0 0.0 29396.0 0.0 5823.0 8236.0 0 0 0 g 0 0 0 0 0 9686.0 10841.0 0.0 27108.0 0.0 11206.0 0.0 0.0 0.0 1538.0 7897.0 0 0 0 t 0 0 0 0 0 11119.0 903.0 29396.0 2288.0 0.0 3113.0 29396.0 0.0 0.0 21777.0 9257.0 0 0 0
MA1622.1_shift3 (Smad2::Smad3)				; oligos_7nt_mkv4_m4 versus MA1622.1 (Smad2::Smad3); m=13/32; ncol2=14; w=12; offset=-2; strand=D; shift=3; score=0.844797; ---rtkrTGACTCAtwm-- ; cor=; Ncor= a 0 0 0 2995.0 2508.0 2499.0 4451.0 79.0 90.0 10141.0 627.0 247.0 711.0 10056.0 683.0 2948.0 2746.0 0 0 c 0 0 0 2254.0 2515.0 1642.0 2212.0 59.0 82.0 44.0 7480.0 53.0 9443.0 85.0 2047.0 2479.0 2595.0 0 0 g 0 0 0 2615.0 2324.0 3479.0 2888.0 56.0 9768.0 58.0 1542.0 68.0 90.0 79.0 1979.0 2154.0 2524.0 0 0 t 0 0 0 2481.0 2998.0 2725.0 794.0 10151.0 405.0 102.0 696.0 9977.0 101.0 125.0 5636.0 2764.0 2480.0 0 0
MA0478.1_rc_shift6 (FOSL2_rc)				; oligos_7nt_mkv4_m4 versus MA0478.1_rc (FOSL2_rc); m=14/32; ncol2=11; w=11; offset=1; strand=R; shift=6; score=0.835062; ------vTGAsTCAyym-- ; cor=; Ncor= a 0 0 0 0 0 0 1986.0 0.0 0.0 5318.0 194.0 0.0 0.0 5318.0 74.0 494.0 1405.0 0 0 c 0 0 0 0 0 0 1933.0 0.0 0.0 0.0 1838.0 192.0 5318.0 0.0 2328.0 2707.0 2086.0 0 0 g 0 0 0 0 0 0 1399.0 0.0 5113.0 0.0 3286.0 51.0 0.0 0.0 55.0 592.0 994.0 0 0 t 0 0 0 0 0 0 0.0 5318.0 205.0 0.0 0.0 5075.0 0.0 0.0 2861.0 1525.0 833.0 0 0
MA0841.1_shift5 (NFE2)				; oligos_7nt_mkv4_m4 versus MA0841.1 (NFE2); m=15/32; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.827332; -----vATGACTCATs--- ; cor=; Ncor= a 0 0 0 0 0 5589.0 18831.0 2.0 0.0 18831.0 37.0 0.0 1.0 18831.0 0.0 487.0 0 0 0 c 0 0 0 0 0 7208.0 9.0 8.0 0.0 11.0 14360.0 20.0 18831.0 13.0 2689.0 9860.0 0 0 0 g 0 0 0 0 0 5303.0 1306.0 0.0 18831.0 0.0 4472.0 3.0 0.0 8.0 10.0 5067.0 0 0 0 t 0 0 0 0 0 731.0 5.0 18831.0 2.0 4.0 17.0 18831.0 3.0 5.0 18831.0 3417.0 0 0 0
MA1633.1_shift5 (BACH1)				; oligos_7nt_mkv4_m4 versus MA1633.1 (BACH1); m=16/32; ncol2=13; w=12; offset=0; strand=D; shift=5; score=0.812367; -----saTGACTCAGCaw- ; cor=; Ncor= a 0 0 0 0 0 3257.0 6929.0 105.0 97.0 15046.0 443.0 650.0 576.0 14778.0 339.0 769.0 8799.0 4492.0 0 c 0 0 0 0 0 3946.0 3833.0 267.0 149.0 230.0 12597.0 220.0 14563.0 194.0 623.0 13382.0 2167.0 3574.0 0 g 0 0 0 0 0 4835.0 3848.0 149.0 14831.0 167.0 2083.0 266.0 178.0 310.0 13050.0 858.0 1971.0 3553.0 0 t 0 0 0 0 0 3519.0 947.0 15036.0 480.0 114.0 434.0 14421.0 240.0 275.0 1545.0 548.0 2620.0 3938.0 0
MA0099.3_rc_shift5 (FOS::JUN_rc)				; oligos_7nt_mkv4_m4 versus MA0099.3_rc (FOS::JUN_rc); m=17/32; ncol2=10; w=10; offset=0; strand=R; shift=5; score=0.804345; -----krTGACTCAy---- ; cor=; Ncor= a 0 0 0 0 0 162.0 568.0 4.0 4.0 991.0 54.0 45.0 168.0 990.0 40.0 0 0 0 0 c 0 0 0 0 0 164.0 95.0 2.0 3.0 2.0 688.0 4.0 824.0 2.0 257.0 0 0 0 0 g 0 0 0 0 0 397.0 313.0 2.0 963.0 2.0 180.0 131.0 1.0 5.0 111.0 0 0 0 0 t 0 0 0 0 0 277.0 24.0 992.0 30.0 5.0 78.0 820.0 7.0 3.0 592.0 0 0 0 0
MA1135.1_shift5 (FOSB::JUNB)				; oligos_7nt_mkv4_m4 versus MA1135.1 (FOSB::JUNB); m=18/32; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.795002; -----krTGAsTCAy---- ; cor=; Ncor= a 0 0 0 0 0 119.0 598.0 1.0 1.0 997.0 34.0 2.0 191.0 998.0 37.0 0 0 0 0 c 0 0 0 0 0 182.0 61.0 0.0 0.0 1.0 596.0 1.0 808.0 0.0 259.0 0 0 0 0 g 0 0 0 0 0 429.0 321.0 1.0 980.0 1.0 309.0 39.0 1.0 1.0 126.0 0 0 0 0 t 0 0 0 0 0 270.0 20.0 998.0 19.0 1.0 61.0 958.0 1.0 1.0 578.0 0 0 0 0
MA1144.1_shift5 (FOSL2::JUND)				; oligos_7nt_mkv4_m4 versus MA1144.1 (FOSL2::JUND); m=19/32; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.794457; -----krTGAsTCAy---- ; cor=; Ncor= a 0 0 0 0 0 137.0 634.0 0.0 0.0 998.0 46.0 6.0 140.0 999.0 38.0 0 0 0 0 c 0 0 0 0 0 143.0 60.0 0.0 0.0 1.0 604.0 0.0 860.0 0.0 266.0 0 0 0 0 g 0 0 0 0 0 446.0 291.0 0.0 990.0 0.0 292.0 60.0 0.0 0.0 113.0 0 0 0 0 t 0 0 0 0 0 275.0 14.0 999.0 10.0 0.0 58.0 934.0 0.0 0.0 583.0 0 0 0 0
MA1138.1_shift5 (FOSL2::JUNB)				; oligos_7nt_mkv4_m4 versus MA1138.1 (FOSL2::JUNB); m=20/32; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.793523; -----krTGAsTCAy---- ; cor=; Ncor= a 0 0 0 0 0 151.0 621.0 0.0 0.0 999.0 54.0 1.0 168.0 999.0 35.0 0 0 0 0 c 0 0 0 0 0 164.0 53.0 0.0 0.0 0.0 568.0 0.0 831.0 0.0 251.0 0 0 0 0 g 0 0 0 0 0 407.0 314.0 0.0 985.0 0.0 292.0 26.0 0.0 0.0 112.0 0 0 0 0 t 0 0 0 0 0 277.0 13.0 999.0 14.0 0.0 85.0 973.0 0.0 0.0 602.0 0 0 0 0
MA1142.1_shift5 (FOSL1::JUND)				; oligos_7nt_mkv4_m4 versus MA1142.1 (FOSL1::JUND); m=21/32; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.785499; -----rrTGActmAt---- ; cor=; Ncor= a 0 0 0 0 0 265.0 551.0 30.0 22.0 864.0 49.0 98.0 270.0 912.0 174.0 0 0 0 0 c 0 0 0 0 0 221.0 127.0 23.0 61.0 12.0 581.0 45.0 641.0 40.0 212.0 0 0 0 0 g 0 0 0 0 0 279.0 282.0 34.0 777.0 82.0 191.0 187.0 25.0 17.0 144.0 0 0 0 0 t 0 0 0 0 0 235.0 40.0 913.0 140.0 41.0 180.0 669.0 64.0 31.0 470.0 0 0 0 0
MA1132.1_shift5 (JUN::JUNB)				; oligos_7nt_mkv4_m4 versus MA1132.1 (JUN::JUNB); m=22/32; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.772743; -----kaTGACkCAt---- ; cor=; Ncor= a 0 0 0 0 0 203.0 627.0 11.0 10.0 944.0 27.0 58.0 161.0 931.0 188.0 0 0 0 0 c 0 0 0 0 0 128.0 134.0 10.0 21.0 10.0 826.0 24.0 707.0 24.0 248.0 0 0 0 0 g 0 0 0 0 0 408.0 189.0 34.0 921.0 28.0 115.0 353.0 10.0 18.0 64.0 0 0 0 0 t 0 0 0 0 0 261.0 50.0 946.0 47.0 18.0 33.0 565.0 122.0 27.0 500.0 0 0 0 0
MA0496.3_shift4 (MAFK)				; oligos_7nt_mkv4_m4 versus MA0496.3 (MAFK); m=23/32; ncol2=15; w=12; offset=-1; strand=D; shift=4; score=0.69653; ----tgmTGACTCAGCmww ; cor=; Ncor= a 0 0 0 0 11946.0 9602.0 14089.0 1616.0 1108.0 47484.0 2492.0 2722.0 1818.0 47675.0 1439.0 2664.0 24802.0 15933.0 14818.0 c 0 0 0 0 10789.0 10655.0 27000.0 1568.0 1366.0 1670.0 39125.0 1133.0 47872.0 882.0 1921.0 43458.0 14138.0 10737.0 9756.0 g 0 0 0 0 9969.0 21904.0 6706.0 1058.0 46695.0 1306.0 7573.0 1081.0 957.0 1267.0 44013.0 3327.0 4590.0 10512.0 8541.0 t 0 0 0 0 19030.0 9573.0 3939.0 47492.0 2565.0 1274.0 2544.0 46798.0 1087.0 1910.0 4361.0 2285.0 8204.0 14552.0 18619.0
MA0655.1_shift6 (JDP2)				; oligos_7nt_mkv4_m4 versus MA0655.1 (JDP2); m=24/32; ncol2=9; w=9; offset=1; strand=D; shift=6; score=0.690263; ------ATGASTCAT---- ; cor=; Ncor= a 0 0 0 0 0 0 1634.0 5.0 0.0 1634.0 14.0 6.0 22.0 1634.0 22.0 0 0 0 0 c 0 0 0 0 0 0 19.0 6.0 3.0 1.0 1200.0 0.0 1634.0 0.0 404.0 0 0 0 0 g 0 0 0 0 0 0 140.0 1.0 1634.0 2.0 434.0 6.0 3.0 0.0 5.0 0 0 0 0 t 0 0 0 0 0 0 8.0 1634.0 22.0 25.0 13.0 1634.0 9.0 7.0 1634.0 0 0 0 0
MA0489.1_rc_shift6 (JUN(var.2)_rc)				; oligos_7nt_mkv4_m4 versus MA0489.1_rc (JUN(var.2)_rc); m=25/32; ncol2=14; w=11; offset=1; strand=R; shift=6; score=0.672156; ------aTGAsTCAyyyyy ; cor=; Ncor= a 0 0 0 0 0 0 5426.0 0.0 0.0 10757.0 780.0 3.0 0.0 10956.0 0.0 2004.0 1977.0 1773.0 1595.0 c 0 0 0 0 0 0 2645.0 0.0 0.0 0.0 4090.0 0.0 10956.0 0.0 4033.0 4213.0 3461.0 4330.0 4110.0 g 0 0 0 0 0 0 2509.0 0.0 10000.0 0.0 5704.0 0.0 0.0 0.0 993.0 593.0 1122.0 1127.0 1324.0 t 0 0 0 0 0 0 376.0 10956.0 956.0 199.0 382.0 10953.0 0.0 0.0 5930.0 4146.0 4396.0 3726.0 3927.0
MA0591.1_shift3 (Bach1::Mafk)				; oligos_7nt_mkv4_m4 versus MA0591.1 (Bach1::Mafk); m=26/32; ncol2=15; w=12; offset=-2; strand=D; shift=3; score=0.643221; ---rssrTGACTCAGCAs- ; cor=; Ncor= a 0 0 0 45.0 14.0 15.0 66.0 2.0 0.0 113.0 0.0 1.0 5.0 108.0 0.0 0.0 98.0 12.0 0 c 0 0 0 14.0 36.0 41.0 16.0 1.0 0.0 0.0 94.0 0.0 107.0 1.0 1.0 114.0 4.0 42.0 0 g 0 0 0 41.0 46.0 54.0 32.0 0.0 107.0 0.0 20.0 4.0 2.0 3.0 113.0 0.0 6.0 38.0 0 t 0 0 0 14.0 18.0 4.0 0.0 111.0 7.0 1.0 0.0 109.0 0.0 2.0 0.0 0.0 6.0 22.0 0
MA0150.2_shift2 (Nfe2l2)				; oligos_7nt_mkv4_m4 versus MA0150.2 (Nfe2l2); m=27/32; ncol2=15; w=12; offset=-3; strand=D; shift=2; score=0.618174; --casmrTGACTCAGCA-- ; cor=; Ncor= a 0 0 166.0 401.0 118.0 203.0 488.0 0.0 0.0 726.0 20.0 84.0 65.0 577.0 10.0 4.0 623.0 0 0 c 0 0 338.0 78.0 239.0 247.0 28.0 0.0 0.0 0.0 533.0 20.0 549.0 3.0 11.0 699.0 26.0 0 0 g 0 0 109.0 159.0 275.0 152.0 205.0 0.0 711.0 0.0 118.0 16.0 46.0 90.0 698.0 19.0 31.0 0 0 t 0 0 113.0 88.0 94.0 124.0 5.0 726.0 15.0 0.0 55.0 606.0 66.0 56.0 7.0 4.0 46.0 0 0
MA0089.2_shift3 (NFE2L1)				; oligos_7nt_mkv4_m4 versus MA0089.2 (NFE2L1); m=28/32; ncol2=16; w=12; offset=-2; strand=D; shift=3; score=0.606867; ---avmATGACTCAGCAaw ; cor=; Ncor= a 0 0 0 1244.0 878.0 992.0 2582.0 12.0 17.0 3336.0 51.0 218.0 185.0 3171.0 57.0 16.0 2857.0 1362.0 1145.0 c 0 0 0 703.0 946.0 853.0 57.0 5.0 7.0 4.0 2864.0 12.0 3049.0 9.0 18.0 3281.0 64.0 517.0 224.0 g 0 0 0 671.0 1050.0 742.0 706.0 2.0 3308.0 10.0 358.0 35.0 25.0 78.0 3018.0 33.0 142.0 694.0 305.0 t 0 0 0 738.0 482.0 769.0 11.0 3337.0 24.0 6.0 83.0 3091.0 97.0 98.0 263.0 26.0 293.0 783.0 1682.0
MA1101.2_shift1 (BACH2)				; oligos_7nt_mkv4_m4 versus MA1101.2 (BACH2); m=29/32; ncol2=19; w=12; offset=-4; strand=D; shift=1; score=0.553639; -awasCATGAsTCATsvtw ; cor=; Ncor= a 0 26746.0 38327.0 59307.0 12404.0 9369.0 62993.0 1.0 6.0 67846.0 50.0 3.0 115.0 68264.0 47.0 4522.0 19650.0 18457.0 23586.0 c 0 12203.0 8823.0 5534.0 21218.0 61580.0 260.0 7.0 0.0 1088.0 37438.0 20.0 68215.0 2.0 11634.0 35220.0 17682.0 13438.0 10703.0 g 0 13720.0 9605.0 8490.0 21257.0 6727.0 15304.0 1.0 68240.0 13.0 30785.0 856.0 0.0 11.0 2028.0 30498.0 19155.0 7650.0 8221.0 t 0 15601.0 24469.0 15405.0 13391.0 8116.0 0.0 68266.0 54.0 6.0 18.0 67975.0 3.0 0.0 63746.0 5274.0 11783.0 54749.0 39012.0
MA0501.1_shift6 (MAF::NFE2)				; oligos_7nt_mkv4_m4 versus MA0501.1 (MAF::NFE2); m=30/32; ncol2=15; w=11; offset=1; strand=D; shift=6; score=0.551466; ------rTGACTCAGCArw ; cor=; Ncor= a 0 0 0 0 0 0 726.0 0.0 0.0 1090.0 16.0 110.0 80.0 978.0 8.0 0.0 931.0 383.0 361.0 c 0 0 0 0 0 0 26.0 0.0 0.0 0.0 871.0 1.0 937.0 0.0 4.0 1063.0 17.0 203.0 100.0 g 0 0 0 0 0 0 334.0 0.0 1082.0 0.0 166.0 12.0 22.0 51.0 1041.0 22.0 73.0 283.0 130.0 t 0 0 0 0 0 0 4.0 1090.0 8.0 0.0 37.0 967.0 51.0 61.0 37.0 5.0 69.0 221.0 499.0
MA1114.1_rc_shift0 (PBX3_rc)				; oligos_7nt_mkv4_m4 versus MA1114.1_rc (PBX3_rc); m=31/32; ncol2=17; w=12; offset=-5; strand=R; shift=0; score=0.494434; sygcCTGTCACTCAvmc-- ; cor=; Ncor= a 1508.0 1465.0 1525.0 683.0 549.0 376.0 138.0 145.0 83.0 6290.0 969.0 256.0 160.0 5697.0 1924.0 1853.0 1523.0 0 0 c 2217.0 2068.0 1591.0 4077.0 5691.0 425.0 209.0 604.0 6550.0 285.0 4929.0 214.0 6406.0 503.0 1928.0 1934.0 2192.0 0 0 g 1801.0 1619.0 2654.0 1377.0 412.0 129.0 6524.0 108.0 242.0 199.0 788.0 125.0 227.0 225.0 1849.0 1724.0 1711.0 0 0 t 1495.0 1869.0 1251.0 884.0 369.0 6091.0 150.0 6164.0 146.0 247.0 335.0 6426.0 228.0 596.0 1320.0 1510.0 1595.0 0 0
MA0067.1_rc_shift4 (Pax2_rc)				; oligos_7nt_mkv4_m4 versus MA0067.1_rc (Pax2_rc); m=32/32; ncol2=8; w=7; offset=-1; strand=R; shift=4; score=0.437323; ----vmrTGAcw------- ; cor=; Ncor= a 0 0 0 0 8.0 10.0 11.0 1.0 2.0 26.0 2.0 9.0 0 0 0 0 0 0 0 c 0 0 0 0 11.0 19.0 1.0 3.0 1.0 0.0 21.0 5.0 0 0 0 0 0 0 0 g 0 0 0 0 11.0 0.0 17.0 1.0 28.0 2.0 1.0 7.0 0 0 0 0 0 0 0 t 0 0 0 0 1.0 2.0 2.0 26.0 0.0 3.0 7.0 10.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m20_shift5 (dyads_m20dyads_m20)				; dyads_m20 (dyads_m20dyads_m20); m=0 (reference); ncol1=11; shift=5; ncol=19; -----gvTGACTCAbv--- ; Alignment reference a 0 0 0 0 0 60 85 0 4 340 8 0 8 338 21 91 0 0 0 c 0 0 0 0 0 83 103 0 0 0 316 1 331 0 115 101 0 0 0 g 0 0 0 0 0 119 141 0 332 0 8 2 0 1 115 86 0 0 0 t 0 0 0 0 0 78 11 340 4 0 8 337 1 1 89 62 0 0 0
MA1634.1_shift5 (BATF)				; dyads_m20 versus MA1634.1 (BATF); m=1/34; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.962254; -----waTGACTCAth--- ; cor=; Ncor= a 0 0 0 0 0 13555.0 22575.0 483.0 1139.0 45946.0 2051.0 1130.0 4742.0 45316.0 8146.0 16139.0 0 0 0 c 0 0 0 0 0 5742.0 8931.0 355.0 570.0 250.0 37333.0 306.0 40279.0 431.0 7566.0 12048.0 0 0 0 g 0 0 0 0 0 11492.0 8627.0 283.0 40617.0 341.0 5573.0 836.0 711.0 507.0 9681.0 5919.0 0 0 0 t 0 0 0 0 0 16219.0 6875.0 45887.0 4682.0 471.0 2051.0 44736.0 1276.0 754.0 21615.0 12902.0 0 0 0
MA0462.2_shift5 (BATF::JUN)				; dyads_m20 versus MA0462.2 (BATF::JUN); m=2/34; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.961848; -----waTGACTCAth--- ; cor=; Ncor= a 0 0 0 0 0 10765.0 18789.0 367.0 834.0 37280.0 1399.0 755.0 3955.0 36854.0 6299.0 13407.0 0 0 0 c 0 0 0 0 0 4762.0 7260.0 275.0 400.0 204.0 31168.0 241.0 32770.0 318.0 6105.0 9668.0 0 0 0 g 0 0 0 0 0 9317.0 6729.0 182.0 33135.0 350.0 4188.0 539.0 522.0 424.0 7745.0 4923.0 0 0 0 t 0 0 0 0 0 13310.0 5376.0 37330.0 3785.0 320.0 1399.0 36619.0 907.0 558.0 18005.0 10156.0 0 0 0
MA0835.2_shift5 (BATF3)				; dyads_m20 versus MA0835.2 (BATF3); m=3/34; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.953646; -----waTGACTCAtw--- ; cor=; Ncor= a 0 0 0 0 0 3609.0 6137.0 132.0 245.0 11670.0 408.0 267.0 1248.0 11529.0 2334.0 4521.0 0 0 0 c 0 0 0 0 0 1245.0 2106.0 59.0 62.0 92.0 10589.0 79.0 10347.0 84.0 1664.0 2733.0 0 0 0 g 0 0 0 0 0 2608.0 1831.0 37.0 10420.0 87.0 560.0 117.0 88.0 117.0 2249.0 1255.0 0 0 0 t 0 0 0 0 0 4503.0 1891.0 11737.0 1238.0 116.0 408.0 11502.0 282.0 235.0 5718.0 3456.0 0 0 0
MA0476.1_shift5 (FOS)				; dyads_m20 versus MA0476.1 (FOS); m=4/34; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.921278; -----dvTGAsTCATb--- ; cor=; Ncor= a 0 0 0 0 0 7879.0 7475.0 0.0 0.0 29396.0 998.0 0.0 0.0 29396.0 258.0 4006.0 0 0 0 c 0 0 0 0 0 712.0 10177.0 0.0 0.0 0.0 14079.0 0.0 29396.0 0.0 5823.0 8236.0 0 0 0 g 0 0 0 0 0 9686.0 10841.0 0.0 27108.0 0.0 11206.0 0.0 0.0 0.0 1538.0 7897.0 0 0 0 t 0 0 0 0 0 11119.0 903.0 29396.0 2288.0 0.0 3113.0 29396.0 0.0 0.0 21777.0 9257.0 0 0 0
MA1130.1_rc_shift5 (FOSL2::JUN_rc)				; dyads_m20 versus MA1130.1_rc (FOSL2::JUN_rc); m=5/34; ncol2=12; w=11; offset=0; strand=R; shift=5; score=0.874517; -----krTGACTCAymm-- ; cor=; Ncor= a 0 0 0 0 0 209.0 589.0 1.0 1.0 998.0 58.0 29.0 158.0 998.0 55.0 269.0 268.0 0 0 c 0 0 0 0 0 180.0 93.0 1.0 1.0 1.0 698.0 1.0 840.0 1.0 282.0 338.0 295.0 0 0 g 0 0 0 0 0 341.0 299.0 0.0 979.0 1.0 141.0 123.0 1.0 1.0 121.0 179.0 248.0 0 0 t 0 0 0 0 0 269.0 19.0 998.0 20.0 1.0 103.0 847.0 1.0 1.0 542.0 214.0 189.0 0 0
MA0841.1_shift5 (NFE2)				; dyads_m20 versus MA0841.1 (NFE2); m=6/34; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.873446; -----vATGACTCATs--- ; cor=; Ncor= a 0 0 0 0 0 5589.0 18831.0 2.0 0.0 18831.0 37.0 0.0 1.0 18831.0 0.0 487.0 0 0 0 c 0 0 0 0 0 7208.0 9.0 8.0 0.0 11.0 14360.0 20.0 18831.0 13.0 2689.0 9860.0 0 0 0 g 0 0 0 0 0 5303.0 1306.0 0.0 18831.0 0.0 4472.0 3.0 0.0 8.0 10.0 5067.0 0 0 0 t 0 0 0 0 0 731.0 5.0 18831.0 2.0 4.0 17.0 18831.0 3.0 5.0 18831.0 3417.0 0 0 0
MA0099.3_rc_shift5 (FOS::JUN_rc)				; dyads_m20 versus MA0099.3_rc (FOS::JUN_rc); m=7/34; ncol2=10; w=10; offset=0; strand=R; shift=5; score=0.862799; -----krTGACTCAy---- ; cor=; Ncor= a 0 0 0 0 0 162.0 568.0 4.0 4.0 991.0 54.0 45.0 168.0 990.0 40.0 0 0 0 0 c 0 0 0 0 0 164.0 95.0 2.0 3.0 2.0 688.0 4.0 824.0 2.0 257.0 0 0 0 0 g 0 0 0 0 0 397.0 313.0 2.0 963.0 2.0 180.0 131.0 1.0 5.0 111.0 0 0 0 0 t 0 0 0 0 0 277.0 24.0 992.0 30.0 5.0 78.0 820.0 7.0 3.0 592.0 0 0 0 0
MA1134.1_rc_shift4 (FOS::JUNB_rc)				; dyads_m20 versus MA1134.1_rc (FOS::JUNB_rc); m=8/34; ncol2=12; w=11; offset=-1; strand=R; shift=4; score=0.858248; ----bkrTGAsTCAym--- ; cor=; Ncor= a 0 0 0 0 156.0 184.0 658.0 1.0 1.0 996.0 25.0 4.0 131.0 998.0 36.0 286.0 0 0 0 c 0 0 0 0 256.0 178.0 51.0 1.0 1.0 3.0 618.0 1.0 868.0 1.0 267.0 372.0 0 0 0 g 0 0 0 0 304.0 363.0 284.0 1.0 971.0 1.0 309.0 30.0 1.0 1.0 105.0 168.0 0 0 0 t 0 0 0 0 283.0 275.0 7.0 998.0 27.0 1.0 48.0 965.0 1.0 1.0 593.0 174.0 0 0 0
MA1135.1_shift5 (FOSB::JUNB)				; dyads_m20 versus MA1135.1 (FOSB::JUNB); m=9/34; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.853716; -----krTGAsTCAy---- ; cor=; Ncor= a 0 0 0 0 0 119.0 598.0 1.0 1.0 997.0 34.0 2.0 191.0 998.0 37.0 0 0 0 0 c 0 0 0 0 0 182.0 61.0 0.0 0.0 1.0 596.0 1.0 808.0 0.0 259.0 0 0 0 0 g 0 0 0 0 0 429.0 321.0 1.0 980.0 1.0 309.0 39.0 1.0 1.0 126.0 0 0 0 0 t 0 0 0 0 0 270.0 20.0 998.0 19.0 1.0 61.0 958.0 1.0 1.0 578.0 0 0 0 0
MA1144.1_shift5 (FOSL2::JUND)				; dyads_m20 versus MA1144.1 (FOSL2::JUND); m=10/34; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.853006; -----krTGAsTCAy---- ; cor=; Ncor= a 0 0 0 0 0 137.0 634.0 0.0 0.0 998.0 46.0 6.0 140.0 999.0 38.0 0 0 0 0 c 0 0 0 0 0 143.0 60.0 0.0 0.0 1.0 604.0 0.0 860.0 0.0 266.0 0 0 0 0 g 0 0 0 0 0 446.0 291.0 0.0 990.0 0.0 292.0 60.0 0.0 0.0 113.0 0 0 0 0 t 0 0 0 0 0 275.0 14.0 999.0 10.0 0.0 58.0 934.0 0.0 0.0 583.0 0 0 0 0
MA1138.1_shift5 (FOSL2::JUNB)				; dyads_m20 versus MA1138.1 (FOSL2::JUNB); m=11/34; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.850252; -----krTGAsTCAy---- ; cor=; Ncor= a 0 0 0 0 0 151.0 621.0 0.0 0.0 999.0 54.0 1.0 168.0 999.0 35.0 0 0 0 0 c 0 0 0 0 0 164.0 53.0 0.0 0.0 0.0 568.0 0.0 831.0 0.0 251.0 0 0 0 0 g 0 0 0 0 0 407.0 314.0 0.0 985.0 0.0 292.0 26.0 0.0 0.0 112.0 0 0 0 0 t 0 0 0 0 0 277.0 13.0 999.0 14.0 0.0 85.0 973.0 0.0 0.0 602.0 0 0 0 0
MA1142.1_shift5 (FOSL1::JUND)				; dyads_m20 versus MA1142.1 (FOSL1::JUND); m=12/34; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.843806; -----rrTGActmAt---- ; cor=; Ncor= a 0 0 0 0 0 265.0 551.0 30.0 22.0 864.0 49.0 98.0 270.0 912.0 174.0 0 0 0 0 c 0 0 0 0 0 221.0 127.0 23.0 61.0 12.0 581.0 45.0 641.0 40.0 212.0 0 0 0 0 g 0 0 0 0 0 279.0 282.0 34.0 777.0 82.0 191.0 187.0 25.0 17.0 144.0 0 0 0 0 t 0 0 0 0 0 235.0 40.0 913.0 140.0 41.0 180.0 669.0 64.0 31.0 470.0 0 0 0 0
MA1132.1_shift5 (JUN::JUNB)				; dyads_m20 versus MA1132.1 (JUN::JUNB); m=13/34; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.832539; -----kaTGACkCAt---- ; cor=; Ncor= a 0 0 0 0 0 203.0 627.0 11.0 10.0 944.0 27.0 58.0 161.0 931.0 188.0 0 0 0 0 c 0 0 0 0 0 128.0 134.0 10.0 21.0 10.0 826.0 24.0 707.0 24.0 248.0 0 0 0 0 g 0 0 0 0 0 408.0 189.0 34.0 921.0 28.0 115.0 353.0 10.0 18.0 64.0 0 0 0 0 t 0 0 0 0 0 261.0 50.0 946.0 47.0 18.0 33.0 565.0 122.0 27.0 500.0 0 0 0 0
MA1141.1_rc_shift4 (FOS::JUND_rc)				; dyads_m20 versus MA1141.1_rc (FOS::JUND_rc); m=14/34; ncol2=13; w=11; offset=-1; strand=R; shift=4; score=0.810061; ----bkrTGACTCAymm-- ; cor=; Ncor= a 0 0 0 0 180.0 185.0 612.0 0.0 0.0 999.0 19.0 15.0 129.0 999.0 38.0 263.0 258.0 0 0 c 0 0 0 0 292.0 195.0 77.0 0.0 0.0 0.0 867.0 0.0 871.0 0.0 266.0 389.0 315.0 0 0 g 0 0 0 0 264.0 370.0 290.0 0.0 970.0 0.0 40.0 91.0 0.0 1.0 104.0 167.0 244.0 0 0 t 0 0 0 0 264.0 250.0 21.0 999.0 29.0 0.0 75.0 894.0 0.0 0.0 593.0 182.0 183.0 0 0
MA1128.1_shift4 (FOSL1::JUN)				; dyads_m20 versus MA1128.1 (FOSL1::JUN); m=15/34; ncol2=13; w=11; offset=-1; strand=D; shift=4; score=0.806753; ----kkrTGACTCAtmm-- ; cor=; Ncor= a 0 0 0 0 208.0 172.0 602.0 1.0 3.0 994.0 26.0 33.0 159.0 984.0 57.0 296.0 277.0 0 0 c 0 0 0 0 246.0 159.0 89.0 2.0 2.0 2.0 826.0 2.0 835.0 4.0 245.0 308.0 289.0 0 0 g 0 0 0 0 253.0 380.0 283.0 1.0 957.0 2.0 51.0 140.0 2.0 9.0 119.0 173.0 237.0 0 0 t 0 0 0 0 293.0 289.0 26.0 996.0 38.0 3.0 97.0 826.0 4.0 4.0 579.0 223.0 196.0 0 0
MA0477.2_shift4 (FOSL1)				; dyads_m20 versus MA0477.2 (FOSL1); m=16/34; ncol2=13; w=11; offset=-1; strand=D; shift=4; score=0.803529; ----draTGACTCAthy-- ; cor=; Ncor= a 0 0 0 0 14979.0 15921.0 35056.0 260.0 515.0 56806.0 2557.0 1060.0 3133.0 56408.0 2716.0 14671.0 13956.0 0 0 c 0 0 0 0 12491.0 11018.0 6703.0 460.0 301.0 287.0 43918.0 163.0 53711.0 344.0 10399.0 15640.0 17637.0 0 0 g 0 0 0 0 14848.0 16855.0 13127.0 183.0 54619.0 286.0 8615.0 598.0 278.0 566.0 6533.0 12314.0 11065.0 0 0 t 0 0 0 0 15363.0 13887.0 2795.0 56778.0 2246.0 302.0 2591.0 55860.0 559.0 363.0 38033.0 15056.0 15023.0 0 0
MA0478.1_shift4 (FOSL2)				; dyads_m20 versus MA0478.1 (FOSL2); m=17/34; ncol2=11; w=10; offset=-1; strand=D; shift=4; score=0.794648; ----krrTGAsTCAb---- ; cor=; Ncor= a 0 0 0 0 833.0 1525.0 2861.0 0.0 0.0 5075.0 0.0 0.0 205.0 5318.0 0.0 0 0 0 0 c 0 0 0 0 994.0 592.0 55.0 0.0 0.0 51.0 3286.0 0.0 5113.0 0.0 1399.0 0 0 0 0 g 0 0 0 0 2086.0 2707.0 2328.0 0.0 5318.0 192.0 1838.0 0.0 0.0 0.0 1933.0 0 0 0 0 t 0 0 0 0 1405.0 494.0 74.0 5318.0 0.0 0.0 194.0 5318.0 0.0 0.0 1986.0 0 0 0 0
MA1137.1_shift4 (FOSL1::JUNB)				; dyads_m20 versus MA1137.1 (FOSL1::JUNB); m=18/34; ncol2=13; w=11; offset=-1; strand=D; shift=4; score=0.794224; ----ykrTGAcTMAtmc-- ; cor=; Ncor= a 0 0 0 0 237.0 216.0 566.0 23.0 36.0 917.0 63.0 59.0 271.0 904.0 53.0 300.0 247.0 0 0 c 0 0 0 0 269.0 146.0 100.0 16.0 21.0 20.0 626.0 23.0 683.0 21.0 225.0 298.0 300.0 0 0 g 0 0 0 0 195.0 376.0 287.0 16.0 880.0 21.0 198.0 115.0 9.0 38.0 170.0 204.0 223.0 0 0 t 0 0 0 0 300.0 263.0 47.0 945.0 63.0 42.0 113.0 803.0 37.0 37.0 552.0 198.0 230.0 0 0
MA0491.2_shift4 (JUND)				; dyads_m20 versus MA0491.2 (JUND); m=19/34; ncol2=13; w=11; offset=-1; strand=D; shift=4; score=0.78251; ----wraTGACTCAThh-- ; cor=; Ncor= a 0 0 0 0 28467.0 29234.0 70166.0 644.0 1365.0 103797.0 4634.0 2053.0 4915.0 103420.0 2796.0 27969.0 28212.0 0 0 c 0 0 0 0 21965.0 19712.0 10173.0 757.0 873.0 650.0 76028.0 496.0 98628.0 751.0 12025.0 28250.0 29793.0 0 0 g 0 0 0 0 25006.0 31347.0 20586.0 443.0 99787.0 573.0 20633.0 1147.0 953.0 965.0 7908.0 22249.0 19236.0 0 0 t 0 0 0 0 30507.0 25652.0 5020.0 104101.0 3920.0 925.0 4650.0 102249.0 1449.0 809.0 83216.0 27477.0 28704.0 0 0
MA0490.2_shift4 (JUNB)				; dyads_m20 versus MA0490.2 (JUNB); m=20/34; ncol2=13; w=11; offset=-1; strand=D; shift=4; score=0.781559; ----wdATGACTCATwh-- ; cor=; Ncor= a 0 0 0 0 22772.0 23561.0 56607.0 538.0 770.0 78101.0 4755.0 1999.0 5243.0 77675.0 3722.0 21544.0 21137.0 0 0 c 0 0 0 0 16583.0 15807.0 7817.0 654.0 550.0 523.0 59784.0 289.0 73199.0 588.0 8876.0 19230.0 20653.0 0 0 g 0 0 0 0 18150.0 20403.0 11566.0 322.0 74757.0 550.0 10519.0 913.0 617.0 900.0 7508.0 16491.0 15068.0 0 0 t 0 0 0 0 22351.0 20085.0 3866.0 78342.0 3779.0 682.0 4798.0 76655.0 797.0 693.0 59750.0 22591.0 22998.0 0 0
MA1633.1_shift5 (BACH1)				; dyads_m20 versus MA1633.1 (BACH1); m=21/34; ncol2=13; w=11; offset=0; strand=D; shift=5; score=0.77348; -----saTGACTCAGCaw- ; cor=; Ncor= a 0 0 0 0 0 3257.0 6929.0 105.0 97.0 15046.0 443.0 650.0 576.0 14778.0 339.0 769.0 8799.0 4492.0 0 c 0 0 0 0 0 3946.0 3833.0 267.0 149.0 230.0 12597.0 220.0 14563.0 194.0 623.0 13382.0 2167.0 3574.0 0 g 0 0 0 0 0 4835.0 3848.0 149.0 14831.0 167.0 2083.0 266.0 178.0 310.0 13050.0 858.0 1971.0 3553.0 0 t 0 0 0 0 0 3519.0 947.0 15036.0 480.0 114.0 434.0 14421.0 240.0 275.0 1545.0 548.0 2620.0 3938.0 0
MA1622.1_shift3 (Smad2::Smad3)				; dyads_m20 versus MA1622.1 (Smad2::Smad3); m=22/34; ncol2=14; w=11; offset=-2; strand=D; shift=3; score=0.764426; ---rtkrTGACTCAtwm-- ; cor=; Ncor= a 0 0 0 2995.0 2508.0 2499.0 4451.0 79.0 90.0 10141.0 627.0 247.0 711.0 10056.0 683.0 2948.0 2746.0 0 0 c 0 0 0 2254.0 2515.0 1642.0 2212.0 59.0 82.0 44.0 7480.0 53.0 9443.0 85.0 2047.0 2479.0 2595.0 0 0 g 0 0 0 2615.0 2324.0 3479.0 2888.0 56.0 9768.0 58.0 1542.0 68.0 90.0 79.0 1979.0 2154.0 2524.0 0 0 t 0 0 0 2481.0 2998.0 2725.0 794.0 10151.0 405.0 102.0 696.0 9977.0 101.0 125.0 5636.0 2764.0 2480.0 0 0
MA0655.1_shift6 (JDP2)				; dyads_m20 versus MA0655.1 (JDP2); m=23/34; ncol2=9; w=9; offset=1; strand=D; shift=6; score=0.732281; ------ATGASTCAT---- ; cor=; Ncor= a 0 0 0 0 0 0 1634.0 5.0 0.0 1634.0 14.0 6.0 22.0 1634.0 22.0 0 0 0 0 c 0 0 0 0 0 0 19.0 6.0 3.0 1.0 1200.0 0.0 1634.0 0.0 404.0 0 0 0 0 g 0 0 0 0 0 0 140.0 1.0 1634.0 2.0 434.0 6.0 3.0 0.0 5.0 0 0 0 0 t 0 0 0 0 0 0 8.0 1634.0 22.0 25.0 13.0 1634.0 9.0 7.0 1634.0 0 0 0 0
MA0496.3_shift4 (MAFK)				; dyads_m20 versus MA0496.3 (MAFK); m=24/34; ncol2=15; w=11; offset=-1; strand=D; shift=4; score=0.659886; ----tgmTGACTCAGCmww ; cor=; Ncor= a 0 0 0 0 11946.0 9602.0 14089.0 1616.0 1108.0 47484.0 2492.0 2722.0 1818.0 47675.0 1439.0 2664.0 24802.0 15933.0 14818.0 c 0 0 0 0 10789.0 10655.0 27000.0 1568.0 1366.0 1670.0 39125.0 1133.0 47872.0 882.0 1921.0 43458.0 14138.0 10737.0 9756.0 g 0 0 0 0 9969.0 21904.0 6706.0 1058.0 46695.0 1306.0 7573.0 1081.0 957.0 1267.0 44013.0 3327.0 4590.0 10512.0 8541.0 t 0 0 0 0 19030.0 9573.0 3939.0 47492.0 2565.0 1274.0 2544.0 46798.0 1087.0 1910.0 4361.0 2285.0 8204.0 14552.0 18619.0
MA0591.1_shift3 (Bach1::Mafk)				; dyads_m20 versus MA0591.1 (Bach1::Mafk); m=25/34; ncol2=15; w=11; offset=-2; strand=D; shift=3; score=0.637388; ---rssrTGACTCAGCAs- ; cor=; Ncor= a 0 0 0 45.0 14.0 15.0 66.0 2.0 0.0 113.0 0.0 1.0 5.0 108.0 0.0 0.0 98.0 12.0 0 c 0 0 0 14.0 36.0 41.0 16.0 1.0 0.0 0.0 94.0 0.0 107.0 1.0 1.0 114.0 4.0 42.0 0 g 0 0 0 41.0 46.0 54.0 32.0 0.0 107.0 0.0 20.0 4.0 2.0 3.0 113.0 0.0 6.0 38.0 0 t 0 0 0 14.0 18.0 4.0 0.0 111.0 7.0 1.0 0.0 109.0 0.0 2.0 0.0 0.0 6.0 22.0 0
MA0489.1_shift1 (JUN(var.2))				; dyads_m20 versus MA0489.1 (JUN(var.2)); m=26/34; ncol2=14; w=10; offset=-4; strand=D; shift=1; score=0.627441; -rrrrrrTGAsTCAt---- ; cor=; Ncor= a 0 4852.0 3927.0 3726.0 4396.0 4146.0 5930.0 0.0 0.0 10953.0 382.0 199.0 956.0 10956.0 376.0 0 0 0 0 c 0 1250.0 1324.0 1127.0 1122.0 593.0 993.0 0.0 0.0 0.0 5704.0 0.0 10000.0 0.0 2509.0 0 0 0 0 g 0 2818.0 4110.0 4330.0 3461.0 4213.0 4033.0 0.0 10956.0 0.0 4090.0 0.0 0.0 0.0 2645.0 0 0 0 0 t 0 2036.0 1595.0 1773.0 1977.0 2004.0 0.0 10956.0 0.0 3.0 780.0 10757.0 0.0 0.0 5426.0 0 0 0 0
MA0150.2_shift2 (Nfe2l2)				; dyads_m20 versus MA0150.2 (Nfe2l2); m=27/34; ncol2=15; w=11; offset=-3; strand=D; shift=2; score=0.616161; --casmrTGACTCAGCA-- ; cor=; Ncor= a 0 0 166.0 401.0 118.0 203.0 488.0 0.0 0.0 726.0 20.0 84.0 65.0 577.0 10.0 4.0 623.0 0 0 c 0 0 338.0 78.0 239.0 247.0 28.0 0.0 0.0 0.0 533.0 20.0 549.0 3.0 11.0 699.0 26.0 0 0 g 0 0 109.0 159.0 275.0 152.0 205.0 0.0 711.0 0.0 118.0 16.0 46.0 90.0 698.0 19.0 31.0 0 0 t 0 0 113.0 88.0 94.0 124.0 5.0 726.0 15.0 0.0 55.0 606.0 66.0 56.0 7.0 4.0 46.0 0 0
MA0089.2_shift3 (NFE2L1)				; dyads_m20 versus MA0089.2 (NFE2L1); m=28/34; ncol2=16; w=11; offset=-2; strand=D; shift=3; score=0.596457; ---avmATGACTCAGCAaw ; cor=; Ncor= a 0 0 0 1244.0 878.0 992.0 2582.0 12.0 17.0 3336.0 51.0 218.0 185.0 3171.0 57.0 16.0 2857.0 1362.0 1145.0 c 0 0 0 703.0 946.0 853.0 57.0 5.0 7.0 4.0 2864.0 12.0 3049.0 9.0 18.0 3281.0 64.0 517.0 224.0 g 0 0 0 671.0 1050.0 742.0 706.0 2.0 3308.0 10.0 358.0 35.0 25.0 78.0 3018.0 33.0 142.0 694.0 305.0 t 0 0 0 738.0 482.0 769.0 11.0 3337.0 24.0 6.0 83.0 3091.0 97.0 98.0 263.0 26.0 293.0 783.0 1682.0
MA0501.1_shift6 (MAF::NFE2)				; dyads_m20 versus MA0501.1 (MAF::NFE2); m=29/34; ncol2=15; w=10; offset=1; strand=D; shift=6; score=0.540502; ------rTGACTCAGCArw ; cor=; Ncor= a 0 0 0 0 0 0 726.0 0.0 0.0 1090.0 16.0 110.0 80.0 978.0 8.0 0.0 931.0 383.0 361.0 c 0 0 0 0 0 0 26.0 0.0 0.0 0.0 871.0 1.0 937.0 0.0 4.0 1063.0 17.0 203.0 100.0 g 0 0 0 0 0 0 334.0 0.0 1082.0 0.0 166.0 12.0 22.0 51.0 1041.0 22.0 73.0 283.0 130.0 t 0 0 0 0 0 0 4.0 1090.0 8.0 0.0 37.0 967.0 51.0 61.0 37.0 5.0 69.0 221.0 499.0
MA1521.1_rc_shift3 (MAFA_rc)				; dyads_m20 versus MA1521.1_rc (MAFA_rc); m=30/34; ncol2=15; w=11; offset=-2; strand=R; shift=3; score=0.520163; ---dtGCTGAsTCAGCAh- ; cor=; Ncor= a 0 0 0 2340.0 802.0 258.0 973.0 1123.0 715.0 7524.0 657.0 1231.0 1291.0 8138.0 540.0 119.0 6277.0 2475.0 0 c 0 0 0 1532.0 1956.0 221.0 7957.0 889.0 422.0 1781.0 4024.0 317.0 8028.0 451.0 185.0 8343.0 316.0 2152.0 0 g 0 0 0 2126.0 223.0 8371.0 104.0 453.0 7985.0 240.0 3985.0 1615.0 475.0 986.0 7939.0 206.0 1857.0 1563.0 0 t 0 0 0 2465.0 6132.0 26.0 473.0 8128.0 1204.0 1281.0 602.0 7498.0 668.0 973.0 970.0 304.0 673.0 2273.0 0
MA1520.1_rc_shift3 (MAF_rc)				; dyads_m20 versus MA1520.1_rc (MAF_rc); m=31/34; ncol2=15; w=11; offset=-2; strand=R; shift=3; score=0.51838; ---wTGCTGAsTCAGCAw- ; cor=; Ncor= a 0 0 0 955.0 210.0 66.0 329.0 359.0 301.0 2715.0 344.0 432.0 682.0 2859.0 219.0 8.0 2397.0 922.0 0 c 0 0 0 486.0 562.0 56.0 2821.0 314.0 156.0 404.0 1431.0 116.0 2739.0 116.0 53.0 2938.0 51.0 587.0 0 g 0 0 0 575.0 72.0 2964.0 51.0 103.0 2776.0 89.0 1277.0 343.0 185.0 243.0 2837.0 45.0 516.0 516.0 0 t 0 0 0 977.0 2353.0 48.0 216.0 2904.0 609.0 529.0 387.0 2712.0 316.0 439.0 364.0 80.0 213.0 968.0 0
MA1101.2_shift1 (BACH2)				; dyads_m20 versus MA1101.2 (BACH2); m=32/34; ncol2=19; w=11; offset=-4; strand=D; shift=1; score=0.494469; -awasCATGAsTCATsvtw ; cor=; Ncor= a 0 26746.0 38327.0 59307.0 12404.0 9369.0 62993.0 1.0 6.0 67846.0 50.0 3.0 115.0 68264.0 47.0 4522.0 19650.0 18457.0 23586.0 c 0 12203.0 8823.0 5534.0 21218.0 61580.0 260.0 7.0 0.0 1088.0 37438.0 20.0 68215.0 2.0 11634.0 35220.0 17682.0 13438.0 10703.0 g 0 13720.0 9605.0 8490.0 21257.0 6727.0 15304.0 1.0 68240.0 13.0 30785.0 856.0 0.0 11.0 2028.0 30498.0 19155.0 7650.0 8221.0 t 0 15601.0 24469.0 15405.0 13391.0 8116.0 0.0 68266.0 54.0 6.0 18.0 67975.0 3.0 0.0 63746.0 5274.0 11783.0 54749.0 39012.0
MA0067.1_rc_shift4 (Pax2_rc)				; dyads_m20 versus MA0067.1_rc (Pax2_rc); m=33/34; ncol2=8; w=7; offset=-1; strand=R; shift=4; score=0.477656; ----vmrTGAcw------- ; cor=; Ncor= a 0 0 0 0 8.0 10.0 11.0 1.0 2.0 26.0 2.0 9.0 0 0 0 0 0 0 0 c 0 0 0 0 11.0 19.0 1.0 3.0 1.0 0.0 21.0 5.0 0 0 0 0 0 0 0 g 0 0 0 0 11.0 0.0 17.0 1.0 28.0 2.0 1.0 7.0 0 0 0 0 0 0 0 t 0 0 0 0 1.0 2.0 2.0 26.0 0.0 3.0 7.0 10.0 0 0 0 0 0 0 0
MA1114.1_rc_shift0 (PBX3_rc)				; dyads_m20 versus MA1114.1_rc (PBX3_rc); m=34/34; ncol2=17; w=11; offset=-5; strand=R; shift=0; score=0.453848; sygcCTGTCACTCAvmc-- ; cor=; Ncor= a 1508.0 1465.0 1525.0 683.0 549.0 376.0 138.0 145.0 83.0 6290.0 969.0 256.0 160.0 5697.0 1924.0 1853.0 1523.0 0 0 c 2217.0 2068.0 1591.0 4077.0 5691.0 425.0 209.0 604.0 6550.0 285.0 4929.0 214.0 6406.0 503.0 1928.0 1934.0 2192.0 0 0 g 1801.0 1619.0 2654.0 1377.0 412.0 129.0 6524.0 108.0 242.0 199.0 788.0 125.0 227.0 225.0 1849.0 1724.0 1711.0 0 0 t 1495.0 1869.0 1251.0 884.0 369.0 6091.0 150.0 6164.0 146.0 247.0 335.0 6426.0 228.0 596.0 1320.0 1510.0 1595.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_7nt_m13_shift3 (local_words_7nt_m13local_words_7nt_m13)				; local_words_7nt_m13 (local_words_7nt_m13local_words_7nt_m13); m=0 (reference); ncol1=13; shift=3; ncol=18; ---cdgCACCTGCTsy-- ; Alignment reference a 0 0 0 75 110 64 0 431 4 0 0 0 1 4 78 59 0 0 c 0 0 0 162 103 69 434 0 397 431 5 3 409 58 154 177 0 0 g 0 0 0 100 111 275 2 5 29 4 2 433 2 6 122 68 0 0 t 0 0 0 99 112 28 0 0 6 1 429 0 24 368 82 132 0 0
MA1631.1_shift3 (ASCL1(var.2))				; local_words_7nt_m13 versus MA1631.1 (ASCL1(var.2)); m=1/35; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.949315; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0
MA0830.2_shift3 (TCF4)				; local_words_7nt_m13 versus MA0830.2 (TCF4); m=2/35; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.935373; ---cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0
MA0745.2_shift3 (SNAI2)				; local_words_7nt_m13 versus MA0745.2 (SNAI2); m=3/35; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.820273; ---aygCACCTGTmry-- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0
MA0499.2_shift3 (MYOD1)				; local_words_7nt_m13 versus MA0499.2 (MYOD1); m=4/35; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.805592; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0
MA1648.1_shift4 (TCF12(var.2))				; local_words_7nt_m13 versus MA1648.1 (TCF12(var.2)); m=5/35; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.796346; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0
MA0522.3_shift4 (TCF3)				; local_words_7nt_m13 versus MA0522.3 (TCF3); m=6/35; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.791815; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0
MA0103.3_shift4 (ZEB1)				; local_words_7nt_m13 versus MA0103.3 (ZEB1); m=7/35; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.75045; ----ssCACCTGsss--- ; cor=; Ncor= a 0 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 c 0 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 g 0 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 t 0 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0
MA1621.1_shift2 (Rbpjl)				; local_words_7nt_m13 versus MA1621.1 (Rbpjl); m=8/35; ncol2=14; w=13; offset=-1; strand=D; shift=2; score=0.750183; --svmaCACCTGtsyc-- ; cor=; Ncor= a 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 c 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 g 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 t 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0
MA1620.1_shift3 (Ptf1a(var.3))				; local_words_7nt_m13 versus MA1620.1 (Ptf1a(var.3)); m=9/35; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.738055; ---rmaCACCTGtky--- ; cor=; Ncor= a 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 c 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 g 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 t 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0
MA0500.2_shift3 (MYOG)				; local_words_7nt_m13 versus MA0500.2 (MYOG); m=10/35; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.71257; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0
MA1558.1_rc_shift4 (SNAI1_rc)				; local_words_7nt_m13 versus MA1558.1_rc (SNAI1_rc); m=11/35; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.709703; ----yrCACCTGyh---- ; cor=; Ncor= a 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0
MA1559.1_rc_shift4 (SNAI3_rc)				; local_words_7nt_m13 versus MA1559.1_rc (SNAI3_rc); m=12/35; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.693008; ----trCACCTGyt---- ; cor=; Ncor= a 0 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 c 0 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 g 0 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 t 0 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0
MA0521.1_rc_shift3 (Tcf12_rc)				; local_words_7nt_m13 versus MA0521.1_rc (Tcf12_rc); m=13/35; ncol2=11; w=11; offset=0; strand=R; shift=3; score=0.662748; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0
MA1100.2_rc_shift4 (ASCL1_rc)				; local_words_7nt_m13 versus MA1100.2_rc (ASCL1_rc); m=14/35; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.644589; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0
MA0820.1_shift4 (FIGLA)				; local_words_7nt_m13 versus MA0820.1 (FIGLA); m=15/35; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.633118; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0
MA0816.1_shift4 (Ascl2)				; local_words_7nt_m13 versus MA0816.1 (Ascl2); m=16/35; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.627349; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0
MA0048.2_shift4 (NHLH1)				; local_words_7nt_m13 versus MA0048.2 (NHLH1); m=17/35; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.61944; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0
MA0744.2_rc_shift3 (SCRT2_rc)				; local_words_7nt_m13 versus MA0744.2_rc (SCRT2_rc); m=18/35; ncol2=16; w=13; offset=0; strand=R; shift=3; score=0.592762; ---waccACCTGTTGmwy ; cor=; Ncor= a 0 0 0 21453.0 18751.0 15588.0 11335.0 58889.0 2140.0 1471.0 1184.0 204.0 953.0 4384.0 3732.0 17252.0 16873.0 12071.0 c 0 0 0 12430.0 14716.0 25288.0 38133.0 1168.0 60636.0 56105.0 252.0 319.0 1878.0 2265.0 1339.0 35769.0 12473.0 17497.0 g 0 0 0 13846.0 16085.0 11351.0 5661.0 3475.0 972.0 728.0 294.0 64856.0 413.0 5536.0 59161.0 7236.0 6319.0 12732.0 t 0 0 0 17881.0 16058.0 13383.0 10481.0 2078.0 1862.0 7306.0 63880.0 231.0 62366.0 53425.0 1378.0 5353.0 29945.0 23310.0
MA0743.2_rc_shift3 (SCRT1_rc)				; local_words_7nt_m13 versus MA0743.2_rc (SCRT1_rc); m=19/35; ncol2=16; w=13; offset=0; strand=R; shift=3; score=0.587045; ---wacCACCTGTTGmwt ; cor=; Ncor= a 0 0 0 19839.0 18454.0 13726.0 7910.0 57969.0 1579.0 1305.0 1058.0 215.0 1002.0 4017.0 2621.0 31975.0 24326.0 12449.0 c 0 0 0 11049.0 13470.0 26973.0 41190.0 259.0 56500.0 51330.0 159.0 224.0 1566.0 1835.0 1297.0 16396.0 10154.0 14514.0 g 0 0 0 12837.0 14903.0 8788.0 3296.0 1098.0 466.0 557.0 234.0 59557.0 370.0 8751.0 54835.0 7425.0 8693.0 10314.0 t 0 0 0 16484.0 13382.0 10722.0 7813.0 883.0 1664.0 7017.0 58758.0 213.0 57271.0 45606.0 1456.0 4413.0 17036.0 22932.0
MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)				; local_words_7nt_m13 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=20/35; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.57149; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0
MA1628.1_rc_shift6 (Zic1::Zic2_rc)				; local_words_7nt_m13 versus MA1628.1_rc (Zic1::Zic2_rc); m=21/35; ncol2=11; w=10; offset=3; strand=R; shift=6; score=0.568173; ------ysCCTGCTGbg- ; cor=; Ncor= a 0 0 0 0 0 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 0 c 0 0 0 0 0 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 0 g 0 0 0 0 0 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 0 t 0 0 0 0 0 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0 0
MA1635.1_shift4 (BHLHE22(var.2))				; local_words_7nt_m13 versus MA1635.1 (BHLHE22(var.2)); m=22/35; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.563791; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0
MA1560.1_shift4 (SOHLH2)				; local_words_7nt_m13 versus MA1560.1 (SOHLH2); m=23/35; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.563289; ----ygCACGTGcr---- ; cor=; Ncor= a 0 0 0 0 230.0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 381.0 0 0 0 0 c 0 0 0 0 485.0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 239.0 0 0 0 0 g 0 0 0 0 184.0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 369.0 0 0 0 0 t 0 0 0 0 313.0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0 224.0 0 0 0 0
MA0825.1_rc_shift4 (MNT_rc)				; local_words_7nt_m13 versus MA0825.1_rc (MNT_rc); m=24/35; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.552461; ----rgCACGTGbt---- ; cor=; Ncor= a 0 0 0 0 219.0 120.0 25.0 681.0 0.0 16.0 21.0 5.0 63.0 129.0 0 0 0 0 c 0 0 0 0 75.0 131.0 681.0 15.0 681.0 7.0 0.0 0.0 203.0 145.0 0 0 0 0 g 0 0 0 0 229.0 281.0 0.0 0.0 0.0 681.0 0.0 681.0 228.0 128.0 0 0 0 0 t 0 0 0 0 159.0 150.0 0.0 0.0 15.0 0.0 681.0 27.0 187.0 279.0 0 0 0 0
MA0058.3_shift4 (MAX)				; local_words_7nt_m13 versus MA0058.3 (MAX); m=25/35; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.545161; ----amCACGTGcy---- ; cor=; Ncor= a 0 0 0 0 3307.0 1915.0 39.0 6876.0 0.0 329.0 69.0 0.0 1341.0 1122.0 0 0 0 0 c 0 0 0 0 1556.0 2809.0 6876.0 0.0 6876.0 39.0 159.0 27.0 2450.0 2225.0 0 0 0 0 g 0 0 0 0 1295.0 1514.0 0.0 87.0 7.0 6876.0 20.0 6876.0 1638.0 986.0 0 0 0 0 t 0 0 0 0 719.0 637.0 0.0 38.0 229.0 19.0 6876.0 36.0 1446.0 2543.0 0 0 0 0
MA1629.1_rc_shift5 (Zic2_rc)				; local_words_7nt_m13 versus MA1629.1_rc (Zic2_rc); m=26/35; ncol2=14; w=11; offset=2; strand=R; shift=5; score=0.523336; -----cyyCCTGCTGtGm ; cor=; Ncor= a 0 0 0 0 0 2104.0 1641.0 2472.0 154.0 410.0 441.0 298.0 67.0 268.0 120.0 2437.0 240.0 3893.0 c 0 0 0 0 0 5314.0 4979.0 4911.0 11465.0 11184.0 735.0 269.0 11484.0 186.0 188.0 829.0 585.0 3821.0 g 0 0 0 0 0 2168.0 1661.0 1476.0 204.0 133.0 118.0 11272.0 228.0 391.0 11476.0 1765.0 9933.0 1755.0 t 0 0 0 0 0 2333.0 3638.0 3060.0 96.0 192.0 10625.0 80.0 140.0 11074.0 135.0 6888.0 1161.0 2450.0
MA1529.1_rc_shift0 (NHLH2_rc)				; local_words_7nt_m13 versus MA1529.1_rc (NHLH2_rc); m=27/35; ncol2=18; w=13; offset=-3; strand=R; shift=0; score=0.512736; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0
MA0807.1_rc_shift3 (TBX5_rc)				; local_words_7nt_m13 versus MA0807.1_rc (TBX5_rc); m=28/35; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.498252; ---TmACACCT------- ; cor=; Ncor= a 0 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 0 c 0 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 0 g 0 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 0 t 0 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0 0
MA0806.1_rc_shift3 (TBX4_rc)				; local_words_7nt_m13 versus MA0806.1_rc (TBX4_rc); m=29/35; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.490655; ---TcACACCT------- ; cor=; Ncor= a 0 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 0 0 0 c 0 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 0 0 0 g 0 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 0 0 0 t 0 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0 0 0 0
MA0803.1_rc_shift3 (TBX15_rc)				; local_words_7nt_m13 versus MA0803.1_rc (TBX15_rc); m=30/35; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.46488; ---TCACACCT------- ; cor=; Ncor= a 0 0 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 0 0 0 0 0 0 c 0 0 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 0 0 0 0 0 0 g 0 0 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 0 0 0 0 0 0 t 0 0 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0 0 0 0 0 0 0
MA1567.1_rc_shift2 (TBX6_rc)				; local_words_7nt_m13 versus MA1567.1_rc (TBX6_rc); m=31/35; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.453486; --tTmACACcty------ ; cor=; Ncor= a 0 0 2330.0 713.0 5964.0 11087.0 12.0 11087.0 0.0 1058.0 2157.0 2456.0 0 0 0 0 0 0 c 0 0 2141.0 2251.0 11087.0 320.0 11087.0 0.0 11087.0 11087.0 3347.0 4003.0 0 0 0 0 0 0 g 0 0 2066.0 652.0 4876.0 3053.0 0.0 1002.0 63.0 2913.0 1173.0 1630.0 0 0 0 0 0 0 t 0 0 4550.0 11087.0 1430.0 552.0 14.0 44.0 58.0 1882.0 11087.0 2998.0 0 0 0 0 0 0
MA0805.1_rc_shift3 (TBX1_rc)				; local_words_7nt_m13 versus MA0805.1_rc (TBX1_rc); m=32/35; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.450876; ---TCACACCT------- ; cor=; Ncor= a 0 0 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 0 0 0 0 c 0 0 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 0 0 0 0 g 0 0 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 0 0 0 0 t 0 0 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0 0 0 0 0
MA0801.1_rc_shift3 (MGA_rc)				; local_words_7nt_m13 versus MA0801.1_rc (MGA_rc); m=33/35; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.444435; ---TCACACCT------- ; cor=; Ncor= a 0 0 0 274.0 6465.0 30489.0 11.0 30489.0 104.0 1929.0 4160.0 0 0 0 0 0 0 0 c 0 0 0 920.0 30489.0 381.0 30489.0 96.0 30489.0 30489.0 8873.0 0 0 0 0 0 0 0 g 0 0 0 110.0 1753.0 3089.0 1.0 3534.0 509.0 3737.0 1151.0 0 0 0 0 0 0 0 t 0 0 0 30489.0 689.0 1042.0 14.0 12.0 16.0 4310.0 30489.0 0 0 0 0 0 0 0
MA0622.1_rc_shift5 (Mlxip_rc)				; local_words_7nt_m13 versus MA0622.1_rc (Mlxip_rc); m=34/35; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.435918; -----mCACGTGv----- ; cor=; Ncor= a 0 0 0 0 0 499.0 0.0 999.0 0.0 0.0 0.0 0.0 263.0 0 0 0 0 0 c 0 0 0 0 0 250.0 999.0 0.0 999.0 0.0 0.0 0.0 421.0 0 0 0 0 0 g 0 0 0 0 0 63.0 0.0 0.0 0.0 999.0 0.0 999.0 263.0 0 0 0 0 0 t 0 0 0 0 0 188.0 0.0 0.0 0.0 0.0 999.0 0.0 53.0 0 0 0 0 0
MA0802.1_rc_shift1 (TBR1_rc)				; local_words_7nt_m13 versus MA0802.1_rc (TBR1_rc); m=35/35; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.401138; -tTTCACACCT------- ; cor=; Ncor= a 0 5846.0 4576.0 205.0 7001.0 34509.0 4.0 34509.0 213.0 4480.0 1433.0 0 0 0 0 0 0 0 c 0 4537.0 1488.0 584.0 34509.0 157.0 34509.0 88.0 34509.0 34509.0 3329.0 0 0 0 0 0 0 0 g 0 5619.0 2575.0 90.0 2551.0 4742.0 6.0 1759.0 254.0 3255.0 359.0 0 0 0 0 0 0 0 t 0 18507.0 25869.0 34509.0 1175.0 2386.0 0.0 39.0 70.0 6880.0 34509.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_7nt_m16_shift3 (local_words_7nt_m16local_words_7nt_m16)				; local_words_7nt_m16 (local_words_7nt_m16local_words_7nt_m16); m=0 (reference); ncol1=13; shift=3; ncol=18; ---rsAGCAGGTGchg-- ; Alignment reference a 0 0 0 132 81 374 23 0 435 1 6 0 0 30 112 100 0 0 c 0 0 0 69 129 6 2 439 2 4 29 5 2 276 112 101 0 0 g 0 0 0 182 154 58 416 3 5 437 402 1 440 69 105 166 0 0 t 0 0 0 59 78 4 1 0 0 0 5 436 0 67 113 75 0 0
MA1631.1_rc_shift3 (ASCL1(var.2)_rc)				; local_words_7nt_m16 versus MA1631.1_rc (ASCL1(var.2)_rc); m=1/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.948896; ---gsrGCAGGTGchg-- ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0
MA0830.2_rc_shift3 (TCF4_rc)				; local_words_7nt_m16 versus MA0830.2_rc (TCF4_rc); m=2/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.934645; ---ssggCAGGTGccg-- ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0
MA0745.2_rc_shift3 (SNAI2_rc)				; local_words_7nt_m16 versus MA0745.2_rc (SNAI2_rc); m=3/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.818658; ---rykACAGGTGcrt-- ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0
MA0499.2_rc_shift3 (MYOD1_rc)				; local_words_7nt_m16 versus MA0499.2_rc (MYOD1_rc); m=4/35; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.803792; ---rkrACAGGTGcwg-- ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0
MA1648.1_rc_shift4 (TCF12(var.2)_rc)				; local_words_7nt_m16 versus MA1648.1_rc (TCF12(var.2)_rc); m=5/35; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.796656; ----srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0
MA0522.3_rc_shift4 (TCF3_rc)				; local_words_7nt_m16 versus MA0522.3_rc (TCF3_rc); m=6/35; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.791994; ----ssGCAGGTGbs--- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0
MA0103.3_rc_shift4 (ZEB1_rc)				; local_words_7nt_m16 versus MA0103.3_rc (ZEB1_rc); m=7/35; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.750327; ----sssCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0 0 0
MA1621.1_rc_shift3 (Rbpjl_rc)				; local_words_7nt_m16 versus MA1621.1_rc (Rbpjl_rc); m=8/35; ncol2=14; w=13; offset=0; strand=R; shift=3; score=0.749849; ---grsaCAGGTGtkbs- ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0
MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)				; local_words_7nt_m16 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=9/35; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.737774; ----rmaCAGGTGtky-- ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0
MA0500.2_rc_shift4 (MYOG_rc)				; local_words_7nt_m16 versus MA0500.2_rc (MYOG_rc); m=10/35; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.712281; ----sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0
MA1558.1_shift5 (SNAI1)				; local_words_7nt_m16 versus MA1558.1 (SNAI1); m=11/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.709389; -----drCAGGTGyr--- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0
MA1559.1_shift5 (SNAI3)				; local_words_7nt_m16 versus MA1559.1 (SNAI3); m=12/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.692212; -----arCAGGTGya--- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0
MA0521.1_shift5 (Tcf12)				; local_words_7nt_m16 versus MA0521.1 (Tcf12); m=13/35; ncol2=11; w=11; offset=2; strand=D; shift=5; score=0.662065; -----rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0
MA1100.2_shift5 (ASCL1)				; local_words_7nt_m16 versus MA1100.2 (ASCL1); m=14/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.644113; -----rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0
MA0820.1_rc_shift5 (FIGLA_rc)				; local_words_7nt_m16 versus MA0820.1_rc (FIGLA_rc); m=15/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.633104; -----wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0
MA0816.1_rc_shift5 (Ascl2_rc)				; local_words_7nt_m16 versus MA0816.1_rc (Ascl2_rc); m=16/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.627509; -----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0
MA0048.2_rc_shift5 (NHLH1_rc)				; local_words_7nt_m16 versus MA0048.2_rc (NHLH1_rc); m=17/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.619245; -----mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0
MA0744.2_shift0 (SCRT2)				; local_words_7nt_m16 versus MA0744.2 (SCRT2); m=18/35; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.594099; rrwkCAACAGGTggtw-- ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 0 0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 0 0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 0 0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0 0 0
MA0743.2_shift0 (SCRT1)				; local_words_7nt_m16 versus MA0743.2 (SCRT1); m=19/35; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.588023; wawkCAACAGGTGgtw-- ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 0 0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 0 0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 0 0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0 0 0
MA1472.1_shift5 (BHLHA15(var.2))				; local_words_7nt_m16 versus MA1472.1 (BHLHA15(var.2)); m=20/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.57142; -----avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0
MA1628.1_shift2 (Zic1::Zic2)				; local_words_7nt_m16 versus MA1628.1 (Zic1::Zic2); m=21/35; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.570163; --cvCAGCAGGsr----- ; cor=; Ncor= a 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 0 0 0 0 c 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 0 0 0 0 g 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 0 0 0 0 t 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0 0 0 0 0
MA1635.1_rc_shift5 (BHLHE22(var.2)_rc)				; local_words_7nt_m16 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=22/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.56339; -----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0
MA1560.1_rc_shift5 (SOHLH2_rc)				; local_words_7nt_m16 versus MA1560.1_rc (SOHLH2_rc); m=23/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.562778; -----ygCACGTGcr--- ; cor=; Ncor= a 0 0 0 0 0 224.0 153.0 4.0 1212.0 15.0 7.0 0.0 70.0 276.0 313.0 0 0 0 c 0 0 0 0 0 369.0 172.0 1212.0 0.0 1212.0 11.0 41.0 29.0 1212.0 184.0 0 0 0 g 0 0 0 0 0 239.0 1212.0 4.0 65.0 0.0 1212.0 0.0 1212.0 264.0 485.0 0 0 0 t 0 0 0 0 0 381.0 272.0 41.0 36.0 14.0 0.0 1212.0 45.0 172.0 230.0 0 0 0
MA0825.1_shift5 (MNT)				; local_words_7nt_m16 versus MA0825.1 (MNT); m=24/35; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.552045; -----avCACGTGcy--- ; cor=; Ncor= a 0 0 0 0 0 279.0 187.0 27.0 681.0 0.0 15.0 0.0 0.0 150.0 159.0 0 0 0 c 0 0 0 0 0 128.0 228.0 681.0 0.0 681.0 0.0 0.0 0.0 281.0 229.0 0 0 0 g 0 0 0 0 0 145.0 203.0 0.0 0.0 7.0 681.0 15.0 681.0 131.0 75.0 0 0 0 t 0 0 0 0 0 129.0 63.0 5.0 21.0 16.0 0.0 681.0 25.0 120.0 219.0 0 0 0
MA0058.3_rc_shift5 (MAX_rc)				; local_words_7nt_m16 versus MA0058.3_rc (MAX_rc); m=25/35; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.545085; -----rgCACGTGkt--- ; cor=; Ncor= a 0 0 0 0 0 2543.0 1446.0 36.0 6876.0 19.0 229.0 38.0 0.0 637.0 719.0 0 0 0 c 0 0 0 0 0 986.0 1638.0 6876.0 20.0 6876.0 7.0 87.0 0.0 1514.0 1295.0 0 0 0 g 0 0 0 0 0 2225.0 2450.0 27.0 159.0 39.0 6876.0 0.0 6876.0 2809.0 1556.0 0 0 0 t 0 0 0 0 0 1122.0 1341.0 0.0 69.0 329.0 0.0 6876.0 39.0 1915.0 3307.0 0 0 0
MA1629.1_shift0 (Zic2)				; local_words_7nt_m16 versus MA1629.1 (Zic2); m=26/35; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.525132; mkCaCAGCAGGrrg---- ; cor=; Ncor= a 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0 0 0 0 0 c 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0 0 0 0 0 g 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0 0 0 0 0 t 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0 0 0 0 0
MA1529.1_shift1 (NHLH2)				; local_words_7nt_m16 versus MA1529.1 (NHLH2); m=27/35; ncol2=18; w=13; offset=-2; strand=D; shift=1; score=0.512495; -ggGyMGCAGCTGCGyCm ; cor=; Ncor= a 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 c 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 g 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 t 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0
MA0807.1_shift8 (TBX5)				; local_words_7nt_m16 versus MA0807.1 (TBX5); m=28/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.499258; --------AGGTGTkA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 0 0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 0 0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 0 0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0 0 0
MA0806.1_shift8 (TBX4)				; local_words_7nt_m16 versus MA0806.1 (TBX4); m=29/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.491578; --------AGGTGTgA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 0 0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 0 0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 0 0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0 0 0
MA0803.1_shift8 (TBX15)				; local_words_7nt_m16 versus MA0803.1 (TBX15); m=30/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.465853; --------AGGTGTGA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10502.0 458.0 19.0 61.0 0.0 140.0 44.0 10502.0 0 0 c 0 0 0 0 0 0 0 0 74.0 101.0 7.0 175.0 8.0 435.0 454.0 71.0 0 0 g 0 0 0 0 0 0 0 0 664.0 10502.0 10502.0 245.0 10502.0 324.0 10502.0 306.0 0 0 t 0 0 0 0 0 0 0 0 112.0 103.0 0.0 10502.0 0.0 10502.0 937.0 96.0 0 0
MA1567.1_shift7 (TBX6)				; local_words_7nt_m16 versus MA1567.1 (TBX6); m=31/35; ncol2=10; w=9; offset=4; strand=D; shift=7; score=0.454093; -------ragGTGTkAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 2998.0 11087.0 1882.0 58.0 44.0 14.0 552.0 1430.0 11087.0 4550.0 0 c 0 0 0 0 0 0 0 1630.0 1173.0 2913.0 63.0 1002.0 0.0 3053.0 4876.0 652.0 2066.0 0 g 0 0 0 0 0 0 0 4003.0 3347.0 11087.0 11087.0 0.0 11087.0 320.0 11087.0 2251.0 2141.0 0 t 0 0 0 0 0 0 0 2456.0 2157.0 1058.0 0.0 11087.0 12.0 11087.0 5964.0 713.0 2330.0 0
MA0805.1_shift8 (TBX1)				; local_words_7nt_m16 versus MA0805.1 (TBX1); m=32/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score= 0.4518; --------AGGTGTGA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 11931.0 1560.0 0.0 28.0 0.0 142.0 141.0 11931.0 0 0 c 0 0 0 0 0 0 0 0 113.0 711.0 0.0 214.0 5.0 613.0 720.0 33.0 0 0 g 0 0 0 0 0 0 0 0 1007.0 11931.0 11931.0 141.0 11931.0 109.0 11931.0 18.0 0 0 t 0 0 0 0 0 0 0 0 564.0 669.0 0.0 11931.0 0.0 11931.0 1039.0 0.0 0 0
MA0801.1_shift8 (MGA)				; local_words_7nt_m16 versus MA0801.1 (MGA); m=33/35; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.445354; --------AGGTGTGA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 30489.0 4310.0 16.0 12.0 14.0 1042.0 689.0 30489.0 0 0 c 0 0 0 0 0 0 0 0 1151.0 3737.0 509.0 3534.0 1.0 3089.0 1753.0 110.0 0 0 g 0 0 0 0 0 0 0 0 8873.0 30489.0 30489.0 96.0 30489.0 381.0 30489.0 920.0 0 0 t 0 0 0 0 0 0 0 0 4160.0 1929.0 104.0 30489.0 11.0 30489.0 6465.0 274.0 0 0
MA0622.1_shift6 (Mlxip)				; local_words_7nt_m16 versus MA0622.1 (Mlxip); m=34/35; ncol2=8; w=8; offset=3; strand=D; shift=6; score=0.436234; ------bCACGTGk---- ; cor=; Ncor= a 0 0 0 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 0 0 0 0 c 0 0 0 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 0 0 0 0 g 0 0 0 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 0 0 0 0 t 0 0 0 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0 0 0 0 0
MA0802.1_shift8 (TBR1)				; local_words_7nt_m16 versus MA0802.1 (TBR1); m=35/35; ncol2=10; w=8; offset=5; strand=D; shift=8; score=0.40189; --------AGGTGTGAAa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 34509.0 6880.0 70.0 39.0 0.0 2386.0 1175.0 34509.0 25869.0 18507.0 c 0 0 0 0 0 0 0 0 359.0 3255.0 254.0 1759.0 6.0 4742.0 2551.0 90.0 2575.0 5619.0 g 0 0 0 0 0 0 0 0 3329.0 34509.0 34509.0 88.0 34509.0 157.0 34509.0 584.0 1488.0 4537.0 t 0 0 0 0 0 0 0 0 1433.0 4480.0 213.0 34509.0 4.0 34509.0 7001.0 205.0 4576.0 5846.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv5_m14_shift4 (oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14)				; oligos_8nt_mkv5_m14 (oligos_8nt_mkv5_m14oligos_8nt_mkv5_m14); m=0 (reference); ncol1=13; shift=4; ncol=19; ----ssATGAGTCACms-- ; Alignment reference a 0 0 0 0 49 53 184 3 1 232 6 2 5 241 0 76 54 0 0 c 0 0 0 0 73 80 32 3 2 5 20 9 225 3 206 79 80 0 0 g 0 0 0 0 79 75 30 2 237 1 215 5 9 1 27 34 69 0 0 t 0 0 0 0 47 40 2 240 8 10 7 232 9 3 15 59 45 0 0
MA1141.1_shift4 (FOS::JUND)				; oligos_8nt_mkv5_m14 versus MA1141.1 (FOS::JUND); m=1/32; ncol2=13; w=13; offset=0; strand=D; shift=4; score=0.92654; ----kkrTGAGTCAymv-- ; cor=; Ncor= a 0 0 0 0 183.0 182.0 593.0 0.0 0.0 894.0 75.0 0.0 29.0 999.0 21.0 250.0 264.0 0 0 c 0 0 0 0 244.0 167.0 104.0 1.0 0.0 91.0 40.0 0.0 970.0 0.0 290.0 370.0 264.0 0 0 g 0 0 0 0 315.0 389.0 266.0 0.0 871.0 0.0 867.0 0.0 0.0 0.0 77.0 195.0 292.0 0 0 t 0 0 0 0 258.0 263.0 38.0 999.0 129.0 15.0 19.0 999.0 0.0 0.0 612.0 185.0 180.0 0 0
MA0477.2_rc_shift4 (FOSL1_rc)				; oligos_8nt_mkv5_m14 versus MA0477.2_rc (FOSL1_rc); m=2/32; ncol2=13; w=13; offset=0; strand=R; shift=4; score=0.924328; ----rdaTGAGTCAtyh-- ; cor=; Ncor= a 0 0 0 0 15023.0 15056.0 38033.0 363.0 559.0 55860.0 2591.0 302.0 2246.0 56778.0 2795.0 13887.0 15363.0 0 0 c 0 0 0 0 11065.0 12314.0 6533.0 566.0 278.0 598.0 8615.0 286.0 54619.0 183.0 13127.0 16855.0 14848.0 0 0 g 0 0 0 0 17637.0 15640.0 10399.0 344.0 53711.0 163.0 43918.0 287.0 301.0 460.0 6703.0 11018.0 12491.0 0 0 t 0 0 0 0 13956.0 14671.0 2716.0 56408.0 3133.0 1060.0 2557.0 56806.0 515.0 260.0 35056.0 15921.0 14979.0 0 0
MA1128.1_rc_shift4 (FOSL1::JUN_rc)				; oligos_8nt_mkv5_m14 versus MA1128.1_rc (FOSL1::JUN_rc); m=3/32; ncol2=13; w=13; offset=0; strand=R; shift=4; score=0.921864; ----kkaTGAGTCAymm-- ; cor=; Ncor= a 0 0 0 0 196.0 223.0 579.0 4.0 4.0 826.0 97.0 3.0 38.0 996.0 26.0 289.0 293.0 0 0 c 0 0 0 0 237.0 173.0 119.0 9.0 2.0 140.0 51.0 2.0 957.0 1.0 283.0 380.0 253.0 0 0 g 0 0 0 0 289.0 308.0 245.0 4.0 835.0 2.0 826.0 2.0 2.0 2.0 89.0 159.0 246.0 0 0 t 0 0 0 0 277.0 296.0 57.0 984.0 159.0 33.0 26.0 994.0 3.0 1.0 602.0 172.0 208.0 0 0
MA0491.2_rc_shift4 (JUND_rc)				; oligos_8nt_mkv5_m14 versus MA0491.2_rc (JUND_rc); m=4/32; ncol2=13; w=13; offset=0; strand=R; shift=4; score=0.91197; ----ddATGAGTCAtyw-- ; cor=; Ncor= a 0 0 0 0 28704.0 27477.0 83216.0 809.0 1449.0 102249.0 4650.0 925.0 3920.0 104101.0 5020.0 25652.0 30507.0 0 0 c 0 0 0 0 19236.0 22249.0 7908.0 965.0 953.0 1147.0 20633.0 573.0 99787.0 443.0 20586.0 31347.0 25006.0 0 0 g 0 0 0 0 29793.0 28250.0 12025.0 751.0 98628.0 496.0 76028.0 650.0 873.0 757.0 10173.0 19712.0 21965.0 0 0 t 0 0 0 0 28212.0 27969.0 2796.0 103420.0 4915.0 2053.0 4634.0 103797.0 1365.0 644.0 70166.0 29234.0 28467.0 0 0
MA1137.1_rc_shift4 (FOSL1::JUNB_rc)				; oligos_8nt_mkv5_m14 versus MA1137.1_rc (FOSL1::JUNB_rc); m=5/32; ncol2=13; w=13; offset=0; strand=R; shift=4; score=0.91051; ----gkaTKAgTCAymr-- ; cor=; Ncor= a 0 0 0 0 230.0 198.0 552.0 37.0 37.0 803.0 113.0 42.0 63.0 945.0 47.0 263.0 300.0 0 0 c 0 0 0 0 223.0 204.0 170.0 38.0 9.0 115.0 198.0 21.0 880.0 16.0 287.0 376.0 195.0 0 0 g 0 0 0 0 300.0 298.0 225.0 21.0 683.0 23.0 626.0 20.0 21.0 16.0 100.0 146.0 269.0 0 0 t 0 0 0 0 247.0 300.0 53.0 904.0 271.0 59.0 63.0 917.0 36.0 23.0 566.0 216.0 237.0 0 0
MA0490.2_rc_shift4 (JUNB_rc)				; oligos_8nt_mkv5_m14 versus MA0490.2_rc (JUNB_rc); m=6/32; ncol2=13; w=13; offset=0; strand=R; shift=4; score=0.899502; ----dwATGAGTCAThw-- ; cor=; Ncor= a 0 0 0 0 22998.0 22591.0 59750.0 693.0 797.0 76655.0 4798.0 682.0 3779.0 78342.0 3866.0 20085.0 22351.0 0 0 c 0 0 0 0 15068.0 16491.0 7508.0 900.0 617.0 913.0 10519.0 550.0 74757.0 322.0 11566.0 20403.0 18150.0 0 0 g 0 0 0 0 20653.0 19230.0 8876.0 588.0 73199.0 289.0 59784.0 523.0 550.0 654.0 7817.0 15807.0 16583.0 0 0 t 0 0 0 0 21137.0 21544.0 3722.0 77675.0 5243.0 1999.0 4755.0 78101.0 770.0 538.0 56607.0 23561.0 22772.0 0 0
MA1622.1_rc_shift4 (Smad2::Smad3_rc)				; oligos_8nt_mkv5_m14 versus MA1622.1_rc (Smad2::Smad3_rc); m=7/32; ncol2=14; w=13; offset=0; strand=R; shift=4; score=0.871745; ----kwaTGAGTCAymay- ; cor=; Ncor= a 0 0 0 0 2480.0 2764.0 5636.0 125.0 101.0 9977.0 696.0 102.0 405.0 10151.0 794.0 2725.0 2998.0 2481.0 0 c 0 0 0 0 2524.0 2154.0 1979.0 79.0 90.0 68.0 1542.0 58.0 9768.0 56.0 2888.0 3479.0 2324.0 2615.0 0 g 0 0 0 0 2595.0 2479.0 2047.0 85.0 9443.0 53.0 7480.0 44.0 82.0 59.0 2212.0 1642.0 2515.0 2254.0 0 t 0 0 0 0 2746.0 2948.0 683.0 10056.0 711.0 247.0 627.0 10141.0 90.0 79.0 4451.0 2499.0 2508.0 2995.0 0
MA1130.1_shift4 (FOSL2::JUN)				; oligos_8nt_mkv5_m14 versus MA1130.1 (FOSL2::JUN); m=8/32; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.851447; ----kkrTGAGTCAym--- ; cor=; Ncor= a 0 0 0 0 189.0 214.0 542.0 1.0 1.0 847.0 103.0 1.0 20.0 998.0 19.0 269.0 0 0 0 c 0 0 0 0 248.0 179.0 121.0 1.0 1.0 123.0 141.0 1.0 979.0 0.0 299.0 341.0 0 0 0 g 0 0 0 0 295.0 338.0 282.0 1.0 840.0 1.0 698.0 1.0 1.0 1.0 93.0 180.0 0 0 0 t 0 0 0 0 268.0 269.0 55.0 998.0 158.0 29.0 58.0 998.0 1.0 1.0 589.0 209.0 0 0 0
MA1134.1_shift5 (FOS::JUNB)				; oligos_8nt_mkv5_m14 versus MA1134.1 (FOS::JUNB); m=9/32; ncol2=12; w=12; offset=1; strand=D; shift=5; score=0.840192; -----krTGAsTCAymv-- ; cor=; Ncor= a 0 0 0 0 0 174.0 593.0 1.0 1.0 965.0 48.0 1.0 27.0 998.0 7.0 275.0 283.0 0 0 c 0 0 0 0 0 168.0 105.0 1.0 1.0 30.0 309.0 1.0 971.0 1.0 284.0 363.0 304.0 0 0 g 0 0 0 0 0 372.0 267.0 1.0 868.0 1.0 618.0 3.0 1.0 1.0 51.0 178.0 256.0 0 0 t 0 0 0 0 0 286.0 36.0 998.0 131.0 4.0 25.0 996.0 1.0 1.0 658.0 184.0 156.0 0 0
MA0476.1_rc_shift5 (FOS_rc)				; oligos_8nt_mkv5_m14 versus MA0476.1_rc (FOS_rc); m=10/32; ncol2=11; w=11; offset=1; strand=R; shift=5; score=0.794551; -----vATGAsTCAbh--- ; cor=; Ncor= a 0 0 0 0 0 9257.0 21777.0 0.0 0.0 29396.0 3113.0 0.0 2288.0 29396.0 903.0 11119.0 0 0 0 c 0 0 0 0 0 7897.0 1538.0 0.0 0.0 0.0 11206.0 0.0 27108.0 0.0 10841.0 9686.0 0 0 0 g 0 0 0 0 0 8236.0 5823.0 0.0 29396.0 0.0 14079.0 0.0 0.0 0.0 10177.0 712.0 0 0 0 t 0 0 0 0 0 4006.0 258.0 29396.0 0.0 0.0 998.0 29396.0 0.0 0.0 7475.0 7879.0 0 0 0
MA0478.1_rc_shift6 (FOSL2_rc)				; oligos_8nt_mkv5_m14 versus MA0478.1_rc (FOSL2_rc); m=11/32; ncol2=11; w=11; offset=2; strand=R; shift=6; score=0.775466; ------vTGAsTCAyym-- ; cor=; Ncor= a 0 0 0 0 0 0 1986.0 0.0 0.0 5318.0 194.0 0.0 0.0 5318.0 74.0 494.0 1405.0 0 0 c 0 0 0 0 0 0 1933.0 0.0 0.0 0.0 1838.0 192.0 5318.0 0.0 2328.0 2707.0 2086.0 0 0 g 0 0 0 0 0 0 1399.0 0.0 5113.0 0.0 3286.0 51.0 0.0 0.0 55.0 592.0 994.0 0 0 t 0 0 0 0 0 0 0.0 5318.0 205.0 0.0 0.0 5075.0 0.0 0.0 2861.0 1525.0 833.0 0 0
MA1634.1_rc_shift5 (BATF_rc)				; oligos_8nt_mkv5_m14 versus MA1634.1_rc (BATF_rc); m=12/32; ncol2=11; w=11; offset=1; strand=R; shift=5; score=0.773232; -----daTGAGTCAtw--- ; cor=; Ncor= a 0 0 0 0 0 12902.0 21615.0 754.0 1276.0 44736.0 2051.0 471.0 4682.0 45887.0 6875.0 16219.0 0 0 0 c 0 0 0 0 0 5919.0 9681.0 507.0 711.0 836.0 5573.0 341.0 40617.0 283.0 8627.0 11492.0 0 0 0 g 0 0 0 0 0 12048.0 7566.0 431.0 40279.0 306.0 37333.0 250.0 570.0 355.0 8931.0 5742.0 0 0 0 t 0 0 0 0 0 16139.0 8146.0 45316.0 4742.0 1130.0 2051.0 45946.0 1139.0 483.0 22575.0 13555.0 0 0 0
MA0462.2_rc_shift5 (BATF::JUN_rc)				; oligos_8nt_mkv5_m14 versus MA0462.2_rc (BATF::JUN_rc); m=13/32; ncol2=11; w=11; offset=1; strand=R; shift=5; score=0.772772; -----daTGAGTCAtw--- ; cor=; Ncor= a 0 0 0 0 0 10156.0 18005.0 558.0 907.0 36619.0 1399.0 320.0 3785.0 37330.0 5376.0 13310.0 0 0 0 c 0 0 0 0 0 4923.0 7745.0 424.0 522.0 539.0 4188.0 350.0 33135.0 182.0 6729.0 9317.0 0 0 0 g 0 0 0 0 0 9668.0 6105.0 318.0 32770.0 241.0 31168.0 204.0 400.0 275.0 7260.0 4762.0 0 0 0 t 0 0 0 0 0 13407.0 6299.0 36854.0 3955.0 755.0 1399.0 37280.0 834.0 367.0 18789.0 10765.0 0 0 0
MA0835.2_rc_shift5 (BATF3_rc)				; oligos_8nt_mkv5_m14 versus MA0835.2_rc (BATF3_rc); m=14/32; ncol2=11; w=11; offset=1; strand=R; shift=5; score=0.765097; -----waTGAGTCAtw--- ; cor=; Ncor= a 0 0 0 0 0 3456.0 5718.0 235.0 282.0 11502.0 408.0 116.0 1238.0 11737.0 1891.0 4503.0 0 0 0 c 0 0 0 0 0 1255.0 2249.0 117.0 88.0 117.0 560.0 87.0 10420.0 37.0 1831.0 2608.0 0 0 0 g 0 0 0 0 0 2733.0 1664.0 84.0 10347.0 79.0 10589.0 92.0 62.0 59.0 2106.0 1245.0 0 0 0 t 0 0 0 0 0 4521.0 2334.0 11529.0 1248.0 267.0 408.0 11670.0 245.0 132.0 6137.0 3609.0 0 0 0
MA0841.1_rc_shift5 (NFE2_rc)				; oligos_8nt_mkv5_m14 versus MA0841.1_rc (NFE2_rc); m=15/32; ncol2=11; w=11; offset=1; strand=R; shift=5; score= 0.7255; -----sATGAGTCATb--- ; cor=; Ncor= a 0 0 0 0 0 3417.0 18831.0 5.0 3.0 18831.0 17.0 4.0 2.0 18831.0 5.0 731.0 0 0 0 c 0 0 0 0 0 5067.0 10.0 8.0 0.0 3.0 4472.0 0.0 18831.0 0.0 1306.0 5303.0 0 0 0 g 0 0 0 0 0 9860.0 2689.0 13.0 18831.0 20.0 14360.0 11.0 0.0 8.0 9.0 7208.0 0 0 0 t 0 0 0 0 0 487.0 0.0 18831.0 1.0 0.0 37.0 18831.0 0.0 2.0 18831.0 5589.0 0 0 0
MA0099.3_shift6 (FOS::JUN)				; oligos_8nt_mkv5_m14 versus MA0099.3 (FOS::JUN); m=16/32; ncol2=10; w=10; offset=2; strand=D; shift=6; score=0.715513; ------rTGAGTCAym--- ; cor=; Ncor= a 0 0 0 0 0 0 592.0 3.0 7.0 820.0 78.0 5.0 30.0 992.0 24.0 277.0 0 0 0 c 0 0 0 0 0 0 111.0 5.0 1.0 131.0 180.0 2.0 963.0 2.0 313.0 397.0 0 0 0 g 0 0 0 0 0 0 257.0 2.0 824.0 4.0 688.0 2.0 3.0 2.0 95.0 164.0 0 0 0 t 0 0 0 0 0 0 40.0 990.0 168.0 45.0 54.0 991.0 4.0 4.0 568.0 162.0 0 0 0
MA1135.1_rc_shift6 (FOSB::JUNB_rc)				; oligos_8nt_mkv5_m14 versus MA1135.1_rc (FOSB::JUNB_rc); m=17/32; ncol2=10; w=10; offset=2; strand=R; shift=6; score=0.706363; ------rTGAsTCAym--- ; cor=; Ncor= a 0 0 0 0 0 0 578.0 1.0 1.0 958.0 61.0 1.0 19.0 998.0 20.0 270.0 0 0 0 c 0 0 0 0 0 0 126.0 1.0 1.0 39.0 309.0 1.0 980.0 1.0 321.0 429.0 0 0 0 g 0 0 0 0 0 0 259.0 0.0 808.0 1.0 596.0 1.0 0.0 0.0 61.0 182.0 0 0 0 t 0 0 0 0 0 0 37.0 998.0 191.0 2.0 34.0 997.0 1.0 1.0 598.0 119.0 0 0 0
MA1138.1_rc_shift6 (FOSL2::JUNB_rc)				; oligos_8nt_mkv5_m14 versus MA1138.1_rc (FOSL2::JUNB_rc); m=18/32; ncol2=10; w=10; offset=2; strand=R; shift=6; score=0.705741; ------rTGAsTCAym--- ; cor=; Ncor= a 0 0 0 0 0 0 602.0 0.0 0.0 973.0 85.0 0.0 14.0 999.0 13.0 277.0 0 0 0 c 0 0 0 0 0 0 112.0 0.0 0.0 26.0 292.0 0.0 985.0 0.0 314.0 407.0 0 0 0 g 0 0 0 0 0 0 251.0 0.0 831.0 0.0 568.0 0.0 0.0 0.0 53.0 164.0 0 0 0 t 0 0 0 0 0 0 35.0 999.0 168.0 1.0 54.0 999.0 0.0 0.0 621.0 151.0 0 0 0
MA1144.1_rc_shift6 (FOSL2::JUND_rc)				; oligos_8nt_mkv5_m14 versus MA1144.1_rc (FOSL2::JUND_rc); m=19/32; ncol2=10; w=10; offset=2; strand=R; shift=6; score=0.703983; ------rTGAsTCAym--- ; cor=; Ncor= a 0 0 0 0 0 0 583.0 0.0 0.0 934.0 58.0 0.0 10.0 999.0 14.0 275.0 0 0 0 c 0 0 0 0 0 0 113.0 0.0 0.0 60.0 292.0 0.0 990.0 0.0 291.0 446.0 0 0 0 g 0 0 0 0 0 0 266.0 0.0 860.0 0.0 604.0 1.0 0.0 0.0 60.0 143.0 0 0 0 t 0 0 0 0 0 0 38.0 999.0 140.0 6.0 46.0 998.0 0.0 0.0 634.0 137.0 0 0 0
MA1142.1_rc_shift6 (FOSL1::JUND_rc)				; oligos_8nt_mkv5_m14 versus MA1142.1_rc (FOSL1::JUND_rc); m=20/32; ncol2=10; w=10; offset=2; strand=R; shift=6; score=0.692836; ------aTkagTCAyy--- ; cor=; Ncor= a 0 0 0 0 0 0 470.0 31.0 64.0 669.0 180.0 41.0 140.0 913.0 40.0 235.0 0 0 0 c 0 0 0 0 0 0 144.0 17.0 25.0 187.0 191.0 82.0 777.0 34.0 282.0 279.0 0 0 0 g 0 0 0 0 0 0 212.0 40.0 641.0 45.0 581.0 12.0 61.0 23.0 127.0 221.0 0 0 0 t 0 0 0 0 0 0 174.0 912.0 270.0 98.0 49.0 864.0 22.0 30.0 551.0 265.0 0 0 0
MA1633.1_rc_shift3 (BACH1_rc)				; oligos_8nt_mkv5_m14 versus MA1633.1_rc (BACH1_rc); m=21/32; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.690097; ---wtGCTGAGTCAts--- ; cor=; Ncor= a 0 0 0 3938.0 2620.0 548.0 1545.0 275.0 240.0 14421.0 434.0 114.0 480.0 15036.0 947.0 3519.0 0 0 0 c 0 0 0 3553.0 1971.0 858.0 13050.0 310.0 178.0 266.0 2083.0 167.0 14831.0 149.0 3848.0 4835.0 0 0 0 g 0 0 0 3574.0 2167.0 13382.0 623.0 194.0 14563.0 220.0 12597.0 230.0 149.0 267.0 3833.0 3946.0 0 0 0 t 0 0 0 4492.0 8799.0 769.0 339.0 14778.0 576.0 650.0 443.0 15046.0 97.0 105.0 6929.0 3257.0 0 0 0
MA1132.1_rc_shift6 (JUN::JUNB_rc)				; oligos_8nt_mkv5_m14 versus MA1132.1_rc (JUN::JUNB_rc); m=22/32; ncol2=10; w=10; offset=2; strand=R; shift=6; score=0.674106; ------aTGmGTCAtm--- ; cor=; Ncor= a 0 0 0 0 0 0 500.0 27.0 122.0 565.0 33.0 18.0 47.0 946.0 50.0 261.0 0 0 0 c 0 0 0 0 0 0 64.0 18.0 10.0 353.0 115.0 28.0 921.0 34.0 189.0 408.0 0 0 0 g 0 0 0 0 0 0 248.0 24.0 707.0 24.0 826.0 10.0 21.0 10.0 134.0 128.0 0 0 0 t 0 0 0 0 0 0 188.0 931.0 161.0 58.0 27.0 944.0 10.0 11.0 627.0 203.0 0 0 0
MA0496.3_rc_shift2 (MAFK_rc)				; oligos_8nt_mkv5_m14 versus MA0496.3_rc (MAFK_rc); m=23/32; ncol2=15; w=13; offset=-2; strand=R; shift=2; score=0.673123; --wwkGCTGAGTCAkca-- ; cor=; Ncor= a 0 0 18619.0 14552.0 8204.0 2285.0 4361.0 1910.0 1087.0 46798.0 2544.0 1274.0 2565.0 47492.0 3939.0 9573.0 19030.0 0 0 c 0 0 8541.0 10512.0 4590.0 3327.0 44013.0 1267.0 957.0 1081.0 7573.0 1306.0 46695.0 1058.0 6706.0 21904.0 9969.0 0 0 g 0 0 9756.0 10737.0 14138.0 43458.0 1921.0 882.0 47872.0 1133.0 39125.0 1670.0 1366.0 1568.0 27000.0 10655.0 10789.0 0 0 t 0 0 14818.0 15933.0 24802.0 2664.0 1439.0 47675.0 1818.0 2722.0 2492.0 47484.0 1108.0 1616.0 14089.0 9602.0 11946.0 0 0
MA0591.1_rc_shift3 (Bach1::Mafk_rc)				; oligos_8nt_mkv5_m14 versus MA0591.1_rc (Bach1::Mafk_rc); m=24/32; ncol2=15; w=13; offset=-1; strand=R; shift=3; score=0.631155; ---sTGCTGAGTCAyssy- ; cor=; Ncor= a 0 0 0 22.0 6.0 0.0 0.0 2.0 0.0 109.0 0.0 1.0 7.0 111.0 0.0 4.0 18.0 14.0 0 c 0 0 0 38.0 6.0 0.0 113.0 3.0 2.0 4.0 20.0 0.0 107.0 0.0 32.0 54.0 46.0 41.0 0 g 0 0 0 42.0 4.0 114.0 1.0 1.0 107.0 0.0 94.0 0.0 0.0 1.0 16.0 41.0 36.0 14.0 0 t 0 0 0 12.0 98.0 0.0 0.0 108.0 5.0 1.0 0.0 113.0 0.0 2.0 66.0 15.0 14.0 45.0 0
MA0489.1_rc_shift6 (JUN(var.2)_rc)				; oligos_8nt_mkv5_m14 versus MA0489.1_rc (JUN(var.2)_rc); m=25/32; ncol2=14; w=11; offset=2; strand=R; shift=6; score=0.626947; ------aTGAsTCAyyyyy ; cor=; Ncor= a 0 0 0 0 0 0 5426.0 0.0 0.0 10757.0 780.0 3.0 0.0 10956.0 0.0 2004.0 1977.0 1773.0 1595.0 c 0 0 0 0 0 0 2645.0 0.0 0.0 0.0 4090.0 0.0 10956.0 0.0 4033.0 4213.0 3461.0 4330.0 4110.0 g 0 0 0 0 0 0 2509.0 0.0 10000.0 0.0 5704.0 0.0 0.0 0.0 993.0 593.0 1122.0 1127.0 1324.0 t 0 0 0 0 0 0 376.0 10956.0 956.0 199.0 382.0 10953.0 0.0 0.0 5930.0 4146.0 4396.0 3726.0 3927.0
MA0655.1_rc_shift6 (JDP2_rc)				; oligos_8nt_mkv5_m14 versus MA0655.1_rc (JDP2_rc); m=26/32; ncol2=9; w=9; offset=2; strand=R; shift=6; score=0.604321; ------ATGASTCAT---- ; cor=; Ncor= a 0 0 0 0 0 0 1634.0 7.0 9.0 1634.0 13.0 25.0 22.0 1634.0 8.0 0 0 0 0 c 0 0 0 0 0 0 5.0 0.0 3.0 6.0 434.0 2.0 1634.0 1.0 140.0 0 0 0 0 g 0 0 0 0 0 0 404.0 0.0 1634.0 0.0 1200.0 1.0 3.0 6.0 19.0 0 0 0 0 t 0 0 0 0 0 0 22.0 1634.0 22.0 6.0 14.0 1634.0 0.0 5.0 1634.0 0 0 0 0
MA0089.2_rc_shift2 (NFE2L1_rc)				; oligos_8nt_mkv5_m14 versus MA0089.2_rc (NFE2L1_rc); m=27/32; ncol2=16; w=13; offset=-2; strand=R; shift=2; score=0.596469; --wtTGCTGAGTCATkbt- ; cor=; Ncor= a 0 0 1682.0 783.0 293.0 26.0 263.0 98.0 97.0 3091.0 83.0 6.0 24.0 3337.0 11.0 769.0 482.0 738.0 0 c 0 0 305.0 694.0 142.0 33.0 3018.0 78.0 25.0 35.0 358.0 10.0 3308.0 2.0 706.0 742.0 1050.0 671.0 0 g 0 0 224.0 517.0 64.0 3281.0 18.0 9.0 3049.0 12.0 2864.0 4.0 7.0 5.0 57.0 853.0 946.0 703.0 0 t 0 0 1145.0 1362.0 2857.0 16.0 57.0 3171.0 185.0 218.0 51.0 3336.0 17.0 12.0 2582.0 992.0 878.0 1244.0 0
MA1101.2_rc_shift1 (BACH2_rc)				; oligos_8nt_mkv5_m14 versus MA1101.2_rc (BACH2_rc); m=28/32; ncol2=19; w=13; offset=-3; strand=R; shift=1; score=0.577241; -awabsATGAsTCATGstw ; cor=; Ncor= a 0 26118.0 39012.0 54749.0 11783.0 5274.0 63746.0 0.0 3.0 67975.0 18.0 6.0 54.0 68266.0 0.0 8116.0 13391.0 15405.0 24469.0 c 0 11268.0 8221.0 7650.0 19155.0 30498.0 2028.0 11.0 0.0 856.0 30785.0 13.0 68240.0 1.0 15304.0 6727.0 21257.0 8490.0 9605.0 g 0 15623.0 10703.0 13438.0 17682.0 35220.0 11634.0 2.0 68215.0 20.0 37438.0 1088.0 0.0 7.0 260.0 61580.0 21218.0 5534.0 8823.0 t 0 15261.0 23586.0 18457.0 19650.0 4522.0 47.0 68264.0 115.0 3.0 50.0 67846.0 6.0 1.0 62993.0 9369.0 12404.0 59307.0 38327.0
MA1114.1_shift4 (PBX3)				; oligos_8nt_mkv5_m14 versus MA1114.1 (PBX3); m=29/32; ncol2=17; w=13; offset=0; strand=D; shift=4; score=0.546632; ----gkbTGAGTGACAGgc ; cor=; Ncor= a 0 0 0 0 1595.0 1510.0 1320.0 596.0 228.0 6426.0 335.0 247.0 146.0 6164.0 150.0 6091.0 369.0 884.0 1251.0 c 0 0 0 0 1711.0 1724.0 1849.0 225.0 227.0 125.0 788.0 199.0 242.0 108.0 6524.0 129.0 412.0 1377.0 2654.0 g 0 0 0 0 2192.0 1934.0 1928.0 503.0 6406.0 214.0 4929.0 285.0 6550.0 604.0 209.0 425.0 5691.0 4077.0 1591.0 t 0 0 0 0 1523.0 1853.0 1924.0 5697.0 160.0 256.0 969.0 6290.0 83.0 145.0 138.0 376.0 549.0 683.0 1525.0
MA0782.2_shift5 (PKNOX1)				; oligos_8nt_mkv5_m14 versus MA0782.2 (PKNOX1); m=30/32; ncol2=15; w=12; offset=1; strand=D; shift=5; score= 0.5449; -----twTGAgTGACAGct ; cor=; Ncor= a 0 0 0 0 0 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 c 0 0 0 0 0 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 g 0 0 0 0 0 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 t 0 0 0 0 0 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0
MA0067.1_shift9 (Pax2)				; oligos_8nt_mkv5_m14 versus MA0067.1 (Pax2); m=31/32; ncol2=8; w=8; offset=5; strand=D; shift=9; score=0.494356; ---------wgTCAykb-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 10.0 7.0 3.0 0.0 26.0 2.0 2.0 1.0 0 0 c 0 0 0 0 0 0 0 0 0 7.0 1.0 2.0 28.0 1.0 17.0 0.0 11.0 0 0 g 0 0 0 0 0 0 0 0 0 5.0 21.0 0.0 1.0 3.0 1.0 19.0 11.0 0 0 t 0 0 0 0 0 0 0 0 0 9.0 2.0 26.0 2.0 1.0 11.0 10.0 8.0 0 0
MA0501.1_rc_shift0 (MAF::NFE2_rc)				; oligos_8nt_mkv5_m14 versus MA0501.1_rc (MAF::NFE2_rc); m=32/32; ncol2=15; w=11; offset=-4; strand=R; shift=0; score=0.475643; rwwyTGCTGAGTCAy---- ; cor=; Ncor= a 490.0 605.0 499.0 221.0 69.0 5.0 37.0 61.0 51.0 967.0 37.0 0.0 8.0 1090.0 4.0 0 0 0 0 c 106.0 91.0 130.0 283.0 73.0 22.0 1041.0 51.0 22.0 12.0 166.0 0.0 1082.0 0.0 334.0 0 0 0 0 g 283.0 102.0 100.0 203.0 17.0 1063.0 4.0 0.0 937.0 1.0 871.0 0.0 0.0 0.0 26.0 0 0 0 0 t 211.0 292.0 361.0 383.0 931.0 0.0 8.0 978.0 80.0 110.0 16.0 1090.0 0.0 0.0 726.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv5_m25_shift3 (oligos_8nt_mkv5_m25oligos_8nt_mkv5_m25)				; oligos_8nt_mkv5_m25 (oligos_8nt_mkv5_m25oligos_8nt_mkv5_m25); m=0 (reference); ncol1=12; shift=3; ncol=19; ---gsATGAtTCAyc---- ; Alignment reference a 0 0 0 47 40 174 3 3 180 14 3 2 190 35 45 0 0 0 0 c 0 0 0 40 58 8 1 5 5 32 4 187 3 53 61 0 0 0 0 g 0 0 0 74 60 14 7 185 7 37 4 7 0 44 46 0 0 0 0 t 0 0 0 37 40 2 187 5 6 115 187 2 5 66 46 0 0 0 0
MA1134.1_rc_shift3 (FOS::JUNB_rc)				; oligos_8nt_mkv5_m25 versus MA1134.1_rc (FOS::JUNB_rc); m=1/33; ncol2=12; w=12; offset=0; strand=R; shift=3; score=0.914799; ---bkrTGAsTCAym---- ; cor=; Ncor= a 0 0 0 156.0 184.0 658.0 1.0 1.0 996.0 25.0 4.0 131.0 998.0 36.0 286.0 0 0 0 0 c 0 0 0 256.0 178.0 51.0 1.0 1.0 3.0 618.0 1.0 868.0 1.0 267.0 372.0 0 0 0 0 g 0 0 0 304.0 363.0 284.0 1.0 971.0 1.0 309.0 30.0 1.0 1.0 105.0 168.0 0 0 0 0 t 0 0 0 283.0 275.0 7.0 998.0 27.0 1.0 48.0 965.0 1.0 1.0 593.0 174.0 0 0 0 0
MA1130.1_shift3 (FOSL2::JUN)				; oligos_8nt_mkv5_m25 versus MA1130.1 (FOSL2::JUN); m=2/33; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.900129; ---kkrTGAGTCAym---- ; cor=; Ncor= a 0 0 0 189.0 214.0 542.0 1.0 1.0 847.0 103.0 1.0 20.0 998.0 19.0 269.0 0 0 0 0 c 0 0 0 248.0 179.0 121.0 1.0 1.0 123.0 141.0 1.0 979.0 0.0 299.0 341.0 0 0 0 0 g 0 0 0 295.0 338.0 282.0 1.0 840.0 1.0 698.0 1.0 1.0 1.0 93.0 180.0 0 0 0 0 t 0 0 0 268.0 269.0 55.0 998.0 158.0 29.0 58.0 998.0 1.0 1.0 589.0 209.0 0 0 0 0
MA0476.1_rc_shift4 (FOS_rc)				; oligos_8nt_mkv5_m25 versus MA0476.1_rc (FOS_rc); m=3/33; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.855819; ----vATGAsTCAbh---- ; cor=; Ncor= a 0 0 0 0 9257.0 21777.0 0.0 0.0 29396.0 3113.0 0.0 2288.0 29396.0 903.0 11119.0 0 0 0 0 c 0 0 0 0 7897.0 1538.0 0.0 0.0 0.0 11206.0 0.0 27108.0 0.0 10841.0 9686.0 0 0 0 0 g 0 0 0 0 8236.0 5823.0 0.0 29396.0 0.0 14079.0 0.0 0.0 0.0 10177.0 712.0 0 0 0 0 t 0 0 0 0 4006.0 258.0 29396.0 0.0 0.0 998.0 29396.0 0.0 0.0 7475.0 7879.0 0 0 0 0
MA0491.2_rc_shift3 (JUND_rc)				; oligos_8nt_mkv5_m25 versus MA0491.2_rc (JUND_rc); m=4/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.84899; ---ddATGAGTCAtyw--- ; cor=; Ncor= a 0 0 0 28704.0 27477.0 83216.0 809.0 1449.0 102249.0 4650.0 925.0 3920.0 104101.0 5020.0 25652.0 30507.0 0 0 0 c 0 0 0 19236.0 22249.0 7908.0 965.0 953.0 1147.0 20633.0 573.0 99787.0 443.0 20586.0 31347.0 25006.0 0 0 0 g 0 0 0 29793.0 28250.0 12025.0 751.0 98628.0 496.0 76028.0 650.0 873.0 757.0 10173.0 19712.0 21965.0 0 0 0 t 0 0 0 28212.0 27969.0 2796.0 103420.0 4915.0 2053.0 4634.0 103797.0 1365.0 644.0 70166.0 29234.0 28467.0 0 0 0
MA0477.2_rc_shift3 (FOSL1_rc)				; oligos_8nt_mkv5_m25 versus MA0477.2_rc (FOSL1_rc); m=5/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.842463; ---rdaTGAGTCAtyh--- ; cor=; Ncor= a 0 0 0 15023.0 15056.0 38033.0 363.0 559.0 55860.0 2591.0 302.0 2246.0 56778.0 2795.0 13887.0 15363.0 0 0 0 c 0 0 0 11065.0 12314.0 6533.0 566.0 278.0 598.0 8615.0 286.0 54619.0 183.0 13127.0 16855.0 14848.0 0 0 0 g 0 0 0 17637.0 15640.0 10399.0 344.0 53711.0 163.0 43918.0 287.0 301.0 460.0 6703.0 11018.0 12491.0 0 0 0 t 0 0 0 13956.0 14671.0 2716.0 56408.0 3133.0 1060.0 2557.0 56806.0 515.0 260.0 35056.0 15921.0 14979.0 0 0 0
MA0490.2_rc_shift3 (JUNB_rc)				; oligos_8nt_mkv5_m25 versus MA0490.2_rc (JUNB_rc); m=6/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.84009; ---dwATGAGTCAThw--- ; cor=; Ncor= a 0 0 0 22998.0 22591.0 59750.0 693.0 797.0 76655.0 4798.0 682.0 3779.0 78342.0 3866.0 20085.0 22351.0 0 0 0 c 0 0 0 15068.0 16491.0 7508.0 900.0 617.0 913.0 10519.0 550.0 74757.0 322.0 11566.0 20403.0 18150.0 0 0 0 g 0 0 0 20653.0 19230.0 8876.0 588.0 73199.0 289.0 59784.0 523.0 550.0 654.0 7817.0 15807.0 16583.0 0 0 0 t 0 0 0 21137.0 21544.0 3722.0 77675.0 5243.0 1999.0 4755.0 78101.0 770.0 538.0 56607.0 23561.0 22772.0 0 0 0
MA1137.1_rc_shift3 (FOSL1::JUNB_rc)				; oligos_8nt_mkv5_m25 versus MA1137.1_rc (FOSL1::JUNB_rc); m=7/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.826707; ---gkaTKAgTCAymr--- ; cor=; Ncor= a 0 0 0 230.0 198.0 552.0 37.0 37.0 803.0 113.0 42.0 63.0 945.0 47.0 263.0 300.0 0 0 0 c 0 0 0 223.0 204.0 170.0 38.0 9.0 115.0 198.0 21.0 880.0 16.0 287.0 376.0 195.0 0 0 0 g 0 0 0 300.0 298.0 225.0 21.0 683.0 23.0 626.0 20.0 21.0 16.0 100.0 146.0 269.0 0 0 0 t 0 0 0 247.0 300.0 53.0 904.0 271.0 59.0 63.0 917.0 36.0 23.0 566.0 216.0 237.0 0 0 0
MA0478.1_shift3 (FOSL2)				; oligos_8nt_mkv5_m25 versus MA0478.1 (FOSL2); m=8/33; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.825234; ---krrTGAsTCAb----- ; cor=; Ncor= a 0 0 0 833.0 1525.0 2861.0 0.0 0.0 5075.0 0.0 0.0 205.0 5318.0 0.0 0 0 0 0 0 c 0 0 0 994.0 592.0 55.0 0.0 0.0 51.0 3286.0 0.0 5113.0 0.0 1399.0 0 0 0 0 0 g 0 0 0 2086.0 2707.0 2328.0 0.0 5318.0 192.0 1838.0 0.0 0.0 0.0 1933.0 0 0 0 0 0 t 0 0 0 1405.0 494.0 74.0 5318.0 0.0 0.0 194.0 5318.0 0.0 0.0 1986.0 0 0 0 0 0
MA0841.1_shift4 (NFE2)				; oligos_8nt_mkv5_m25 versus MA0841.1 (NFE2); m=9/33; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.818998; ----vATGACTCATs---- ; cor=; Ncor= a 0 0 0 0 5589.0 18831.0 2.0 0.0 18831.0 37.0 0.0 1.0 18831.0 0.0 487.0 0 0 0 0 c 0 0 0 0 7208.0 9.0 8.0 0.0 11.0 14360.0 20.0 18831.0 13.0 2689.0 9860.0 0 0 0 0 g 0 0 0 0 5303.0 1306.0 0.0 18831.0 0.0 4472.0 3.0 0.0 8.0 10.0 5067.0 0 0 0 0 t 0 0 0 0 731.0 5.0 18831.0 2.0 4.0 17.0 18831.0 3.0 5.0 18831.0 3417.0 0 0 0 0
MA1128.1_shift3 (FOSL1::JUN)				; oligos_8nt_mkv5_m25 versus MA1128.1 (FOSL1::JUN); m=10/33; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.816953; ---kkrTGACTCAtmm--- ; cor=; Ncor= a 0 0 0 208.0 172.0 602.0 1.0 3.0 994.0 26.0 33.0 159.0 984.0 57.0 296.0 277.0 0 0 0 c 0 0 0 246.0 159.0 89.0 2.0 2.0 2.0 826.0 2.0 835.0 4.0 245.0 308.0 289.0 0 0 0 g 0 0 0 253.0 380.0 283.0 1.0 957.0 2.0 51.0 140.0 2.0 9.0 119.0 173.0 237.0 0 0 0 t 0 0 0 293.0 289.0 26.0 996.0 38.0 3.0 97.0 826.0 4.0 4.0 579.0 223.0 196.0 0 0 0
MA1141.1_rc_shift3 (FOS::JUND_rc)				; oligos_8nt_mkv5_m25 versus MA1141.1_rc (FOS::JUND_rc); m=11/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.816713; ---bkrTGACTCAymm--- ; cor=; Ncor= a 0 0 0 180.0 185.0 612.0 0.0 0.0 999.0 19.0 15.0 129.0 999.0 38.0 263.0 258.0 0 0 0 c 0 0 0 292.0 195.0 77.0 0.0 0.0 0.0 867.0 0.0 871.0 0.0 266.0 389.0 315.0 0 0 0 g 0 0 0 264.0 370.0 290.0 0.0 970.0 0.0 40.0 91.0 0.0 1.0 104.0 167.0 244.0 0 0 0 t 0 0 0 264.0 250.0 21.0 999.0 29.0 0.0 75.0 894.0 0.0 0.0 593.0 182.0 183.0 0 0 0
MA1634.1_rc_shift4 (BATF_rc)				; oligos_8nt_mkv5_m25 versus MA1634.1_rc (BATF_rc); m=12/33; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.808019; ----daTGAGTCAtw---- ; cor=; Ncor= a 0 0 0 0 12902.0 21615.0 754.0 1276.0 44736.0 2051.0 471.0 4682.0 45887.0 6875.0 16219.0 0 0 0 0 c 0 0 0 0 5919.0 9681.0 507.0 711.0 836.0 5573.0 341.0 40617.0 283.0 8627.0 11492.0 0 0 0 0 g 0 0 0 0 12048.0 7566.0 431.0 40279.0 306.0 37333.0 250.0 570.0 355.0 8931.0 5742.0 0 0 0 0 t 0 0 0 0 16139.0 8146.0 45316.0 4742.0 1130.0 2051.0 45946.0 1139.0 483.0 22575.0 13555.0 0 0 0 0
MA0462.2_rc_shift4 (BATF::JUN_rc)				; oligos_8nt_mkv5_m25 versus MA0462.2_rc (BATF::JUN_rc); m=13/33; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.805908; ----daTGAGTCAtw---- ; cor=; Ncor= a 0 0 0 0 10156.0 18005.0 558.0 907.0 36619.0 1399.0 320.0 3785.0 37330.0 5376.0 13310.0 0 0 0 0 c 0 0 0 0 4923.0 7745.0 424.0 522.0 539.0 4188.0 350.0 33135.0 182.0 6729.0 9317.0 0 0 0 0 g 0 0 0 0 9668.0 6105.0 318.0 32770.0 241.0 31168.0 204.0 400.0 275.0 7260.0 4762.0 0 0 0 0 t 0 0 0 0 13407.0 6299.0 36854.0 3955.0 755.0 1399.0 37280.0 834.0 367.0 18789.0 10765.0 0 0 0 0
MA0835.2_shift4 (BATF3)				; oligos_8nt_mkv5_m25 versus MA0835.2 (BATF3); m=14/33; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.792633; ----waTGACTCAtw---- ; cor=; Ncor= a 0 0 0 0 3609.0 6137.0 132.0 245.0 11670.0 408.0 267.0 1248.0 11529.0 2334.0 4521.0 0 0 0 0 c 0 0 0 0 1245.0 2106.0 59.0 62.0 92.0 10589.0 79.0 10347.0 84.0 1664.0 2733.0 0 0 0 0 g 0 0 0 0 2608.0 1831.0 37.0 10420.0 87.0 560.0 117.0 88.0 117.0 2249.0 1255.0 0 0 0 0 t 0 0 0 0 4503.0 1891.0 11737.0 1238.0 116.0 408.0 11502.0 282.0 235.0 5718.0 3456.0 0 0 0 0
MA1622.1_rc_shift3 (Smad2::Smad3_rc)				; oligos_8nt_mkv5_m25 versus MA1622.1_rc (Smad2::Smad3_rc); m=15/33; ncol2=14; w=12; offset=0; strand=R; shift=3; score=0.781903; ---kwaTGAGTCAymay-- ; cor=; Ncor= a 0 0 0 2480.0 2764.0 5636.0 125.0 101.0 9977.0 696.0 102.0 405.0 10151.0 794.0 2725.0 2998.0 2481.0 0 0 c 0 0 0 2524.0 2154.0 1979.0 79.0 90.0 68.0 1542.0 58.0 9768.0 56.0 2888.0 3479.0 2324.0 2615.0 0 0 g 0 0 0 2595.0 2479.0 2047.0 85.0 9443.0 53.0 7480.0 44.0 82.0 59.0 2212.0 1642.0 2515.0 2254.0 0 0 t 0 0 0 2746.0 2948.0 683.0 10056.0 711.0 247.0 627.0 10141.0 90.0 79.0 4451.0 2499.0 2508.0 2995.0 0 0
MA1138.1_shift4 (FOSL2::JUNB)				; oligos_8nt_mkv5_m25 versus MA1138.1 (FOSL2::JUNB); m=16/33; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.766223; ----krTGAsTCAy----- ; cor=; Ncor= a 0 0 0 0 151.0 621.0 0.0 0.0 999.0 54.0 1.0 168.0 999.0 35.0 0 0 0 0 0 c 0 0 0 0 164.0 53.0 0.0 0.0 0.0 568.0 0.0 831.0 0.0 251.0 0 0 0 0 0 g 0 0 0 0 407.0 314.0 0.0 985.0 0.0 292.0 26.0 0.0 0.0 112.0 0 0 0 0 0 t 0 0 0 0 277.0 13.0 999.0 14.0 0.0 85.0 973.0 0.0 0.0 602.0 0 0 0 0 0
MA1144.1_shift4 (FOSL2::JUND)				; oligos_8nt_mkv5_m25 versus MA1144.1 (FOSL2::JUND); m=17/33; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.763431; ----krTGAsTCAy----- ; cor=; Ncor= a 0 0 0 0 137.0 634.0 0.0 0.0 998.0 46.0 6.0 140.0 999.0 38.0 0 0 0 0 0 c 0 0 0 0 143.0 60.0 0.0 0.0 1.0 604.0 0.0 860.0 0.0 266.0 0 0 0 0 0 g 0 0 0 0 446.0 291.0 0.0 990.0 0.0 292.0 60.0 0.0 0.0 113.0 0 0 0 0 0 t 0 0 0 0 275.0 14.0 999.0 10.0 0.0 58.0 934.0 0.0 0.0 583.0 0 0 0 0 0
MA1135.1_shift4 (FOSB::JUNB)				; oligos_8nt_mkv5_m25 versus MA1135.1 (FOSB::JUNB); m=18/33; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.759337; ----krTGAsTCAy----- ; cor=; Ncor= a 0 0 0 0 119.0 598.0 1.0 1.0 997.0 34.0 2.0 191.0 998.0 37.0 0 0 0 0 0 c 0 0 0 0 182.0 61.0 0.0 0.0 1.0 596.0 1.0 808.0 0.0 259.0 0 0 0 0 0 g 0 0 0 0 429.0 321.0 1.0 980.0 1.0 309.0 39.0 1.0 1.0 126.0 0 0 0 0 0 t 0 0 0 0 270.0 20.0 998.0 19.0 1.0 61.0 958.0 1.0 1.0 578.0 0 0 0 0 0
MA0099.3_shift5 (FOS::JUN)				; oligos_8nt_mkv5_m25 versus MA0099.3 (FOS::JUN); m=19/33; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.755836; -----rTGAGTCAym---- ; cor=; Ncor= a 0 0 0 0 0 592.0 3.0 7.0 820.0 78.0 5.0 30.0 992.0 24.0 277.0 0 0 0 0 c 0 0 0 0 0 111.0 5.0 1.0 131.0 180.0 2.0 963.0 2.0 313.0 397.0 0 0 0 0 g 0 0 0 0 0 257.0 2.0 824.0 4.0 688.0 2.0 3.0 2.0 95.0 164.0 0 0 0 0 t 0 0 0 0 0 40.0 990.0 168.0 45.0 54.0 991.0 4.0 4.0 568.0 162.0 0 0 0 0
MA1142.1_shift4 (FOSL1::JUND)				; oligos_8nt_mkv5_m25 versus MA1142.1 (FOSL1::JUND); m=20/33; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.75467; ----rrTGActmAt----- ; cor=; Ncor= a 0 0 0 0 265.0 551.0 30.0 22.0 864.0 49.0 98.0 270.0 912.0 174.0 0 0 0 0 0 c 0 0 0 0 221.0 127.0 23.0 61.0 12.0 581.0 45.0 641.0 40.0 212.0 0 0 0 0 0 g 0 0 0 0 279.0 282.0 34.0 777.0 82.0 191.0 187.0 25.0 17.0 144.0 0 0 0 0 0 t 0 0 0 0 235.0 40.0 913.0 140.0 41.0 180.0 669.0 64.0 31.0 470.0 0 0 0 0 0
MA1132.1_shift4 (JUN::JUNB)				; oligos_8nt_mkv5_m25 versus MA1132.1 (JUN::JUNB); m=21/33; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.707175; ----kaTGACkCAt----- ; cor=; Ncor= a 0 0 0 0 203.0 627.0 11.0 10.0 944.0 27.0 58.0 161.0 931.0 188.0 0 0 0 0 0 c 0 0 0 0 128.0 134.0 10.0 21.0 10.0 826.0 24.0 707.0 24.0 248.0 0 0 0 0 0 g 0 0 0 0 408.0 189.0 34.0 921.0 28.0 115.0 353.0 10.0 18.0 64.0 0 0 0 0 0 t 0 0 0 0 261.0 50.0 946.0 47.0 18.0 33.0 565.0 122.0 27.0 500.0 0 0 0 0 0
MA1633.1_rc_shift2 (BACH1_rc)				; oligos_8nt_mkv5_m25 versus MA1633.1_rc (BACH1_rc); m=22/33; ncol2=13; w=12; offset=-1; strand=R; shift=2; score=0.687722; --wtGCTGAGTCAts---- ; cor=; Ncor= a 0 0 3938.0 2620.0 548.0 1545.0 275.0 240.0 14421.0 434.0 114.0 480.0 15036.0 947.0 3519.0 0 0 0 0 c 0 0 3553.0 1971.0 858.0 13050.0 310.0 178.0 266.0 2083.0 167.0 14831.0 149.0 3848.0 4835.0 0 0 0 0 g 0 0 3574.0 2167.0 13382.0 623.0 194.0 14563.0 220.0 12597.0 230.0 149.0 267.0 3833.0 3946.0 0 0 0 0 t 0 0 4492.0 8799.0 769.0 339.0 14778.0 576.0 650.0 443.0 15046.0 97.0 105.0 6929.0 3257.0 0 0 0 0
MA0655.1_shift5 (JDP2)				; oligos_8nt_mkv5_m25 versus MA0655.1 (JDP2); m=23/33; ncol2=9; w=9; offset=2; strand=D; shift=5; score=0.68355; -----ATGASTCAT----- ; cor=; Ncor= a 0 0 0 0 0 1634.0 5.0 0.0 1634.0 14.0 6.0 22.0 1634.0 22.0 0 0 0 0 0 c 0 0 0 0 0 19.0 6.0 3.0 1.0 1200.0 0.0 1634.0 0.0 404.0 0 0 0 0 0 g 0 0 0 0 0 140.0 1.0 1634.0 2.0 434.0 6.0 3.0 0.0 5.0 0 0 0 0 0 t 0 0 0 0 0 8.0 1634.0 22.0 25.0 13.0 1634.0 9.0 7.0 1634.0 0 0 0 0 0
MA0489.1_shift0 (JUN(var.2))				; oligos_8nt_mkv5_m25 versus MA0489.1 (JUN(var.2)); m=24/33; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.667893; rrrrrrTGAsTCAt----- ; cor=; Ncor= a 4852.0 3927.0 3726.0 4396.0 4146.0 5930.0 0.0 0.0 10953.0 382.0 199.0 956.0 10956.0 376.0 0 0 0 0 0 c 1250.0 1324.0 1127.0 1122.0 593.0 993.0 0.0 0.0 0.0 5704.0 0.0 10000.0 0.0 2509.0 0 0 0 0 0 g 2818.0 4110.0 4330.0 3461.0 4213.0 4033.0 0.0 10956.0 0.0 4090.0 0.0 0.0 0.0 2645.0 0 0 0 0 0 t 2036.0 1595.0 1773.0 1977.0 2004.0 0.0 10956.0 0.0 3.0 780.0 10757.0 0.0 0.0 5426.0 0 0 0 0 0
MA1639.1_shift2 (MEIS1(var.2))				; oligos_8nt_mkv5_m25 versus MA1639.1 (MEIS1(var.2)); m=25/33; ncol2=13; w=12; offset=-1; strand=D; shift=2; score=0.660853; --rhcATmAATCAww---- ; cor=; Ncor= a 0 0 1824.0 1864.0 970.0 6383.0 80.0 2295.0 6063.0 6112.0 127.0 156.0 5433.0 1735.0 1872.0 0 0 0 0 c 0 0 1425.0 1979.0 4571.0 61.0 69.0 3580.0 336.0 214.0 87.0 6367.0 279.0 1504.0 1542.0 0 0 0 0 g 0 0 1902.0 762.0 183.0 218.0 83.0 252.0 33.0 192.0 63.0 61.0 152.0 934.0 1261.0 0 0 0 0 t 0 0 1585.0 2131.0 1012.0 74.0 6504.0 609.0 304.0 218.0 6459.0 152.0 872.0 2563.0 2061.0 0 0 0 0
MA0150.2_shift1 (Nfe2l2)				; oligos_8nt_mkv5_m25 versus MA0150.2 (Nfe2l2); m=26/33; ncol2=15; w=12; offset=-2; strand=D; shift=1; score=0.628922; -casmrTGACTCAGCA--- ; cor=; Ncor= a 0 166.0 401.0 118.0 203.0 488.0 0.0 0.0 726.0 20.0 84.0 65.0 577.0 10.0 4.0 623.0 0 0 0 c 0 338.0 78.0 239.0 247.0 28.0 0.0 0.0 0.0 533.0 20.0 549.0 3.0 11.0 699.0 26.0 0 0 0 g 0 109.0 159.0 275.0 152.0 205.0 0.0 711.0 0.0 118.0 16.0 46.0 90.0 698.0 19.0 31.0 0 0 0 t 0 113.0 88.0 94.0 124.0 5.0 726.0 15.0 0.0 55.0 606.0 66.0 56.0 7.0 4.0 46.0 0 0 0
MA0591.1_shift2 (Bach1::Mafk)				; oligos_8nt_mkv5_m25 versus MA0591.1 (Bach1::Mafk); m=27/33; ncol2=15; w=12; offset=-1; strand=D; shift=2; score=0.625915; --rssrTGACTCAGCAs-- ; cor=; Ncor= a 0 0 45.0 14.0 15.0 66.0 2.0 0.0 113.0 0.0 1.0 5.0 108.0 0.0 0.0 98.0 12.0 0 0 c 0 0 14.0 36.0 41.0 16.0 1.0 0.0 0.0 94.0 0.0 107.0 1.0 1.0 114.0 4.0 42.0 0 0 g 0 0 41.0 46.0 54.0 32.0 0.0 107.0 0.0 20.0 4.0 2.0 3.0 113.0 0.0 6.0 38.0 0 0 t 0 0 14.0 18.0 4.0 0.0 111.0 7.0 1.0 0.0 109.0 0.0 2.0 0.0 0.0 6.0 22.0 0 0
MA0496.3_shift3 (MAFK)				; oligos_8nt_mkv5_m25 versus MA0496.3 (MAFK); m=28/33; ncol2=15; w=12; offset=0; strand=D; shift=3; score=0.611941; ---tgmTGACTCAGCmww- ; cor=; Ncor= a 0 0 0 11946.0 9602.0 14089.0 1616.0 1108.0 47484.0 2492.0 2722.0 1818.0 47675.0 1439.0 2664.0 24802.0 15933.0 14818.0 0 c 0 0 0 10789.0 10655.0 27000.0 1568.0 1366.0 1670.0 39125.0 1133.0 47872.0 882.0 1921.0 43458.0 14138.0 10737.0 9756.0 0 g 0 0 0 9969.0 21904.0 6706.0 1058.0 46695.0 1306.0 7573.0 1081.0 957.0 1267.0 44013.0 3327.0 4590.0 10512.0 8541.0 0 t 0 0 0 19030.0 9573.0 3939.0 47492.0 2565.0 1274.0 2544.0 46798.0 1087.0 1910.0 4361.0 2285.0 8204.0 14552.0 18619.0 0
MA0089.2_shift2 (NFE2L1)				; oligos_8nt_mkv5_m25 versus MA0089.2 (NFE2L1); m=29/33; ncol2=16; w=12; offset=-1; strand=D; shift=2; score=0.610449; --avmATGACTCAGCAaw- ; cor=; Ncor= a 0 0 1244.0 878.0 992.0 2582.0 12.0 17.0 3336.0 51.0 218.0 185.0 3171.0 57.0 16.0 2857.0 1362.0 1145.0 0 c 0 0 703.0 946.0 853.0 57.0 5.0 7.0 4.0 2864.0 12.0 3049.0 9.0 18.0 3281.0 64.0 517.0 224.0 0 g 0 0 671.0 1050.0 742.0 706.0 2.0 3308.0 10.0 358.0 35.0 25.0 78.0 3018.0 33.0 142.0 694.0 305.0 0 t 0 0 738.0 482.0 769.0 11.0 3337.0 24.0 6.0 83.0 3091.0 97.0 98.0 263.0 26.0 293.0 783.0 1682.0 0
MA1640.1_shift3 (MEIS2(var.2))				; oligos_8nt_mkv5_m25 versus MA1640.1 (MEIS2(var.2)); m=30/33; ncol2=15; w=12; offset=0; strand=D; shift=3; score=0.568358; ---raaTGATTTATgryy- ; cor=; Ncor= a 0 0 0 6212.0 6445.0 9929.0 3885.0 1478.0 19361.0 576.0 712.0 1623.0 19344.0 474.0 2623.0 5762.0 3882.0 4556.0 0 c 0 0 0 3311.0 4041.0 2365.0 468.0 302.0 207.0 268.0 201.0 582.0 177.0 1053.0 1089.0 1609.0 6518.0 5248.0 0 g 0 0 0 5768.0 4683.0 3896.0 1400.0 17326.0 224.0 499.0 278.0 1801.0 495.0 502.0 12862.0 8199.0 4176.0 3361.0 0 t 0 0 0 4882.0 5004.0 3983.0 14420.0 1067.0 381.0 18830.0 18982.0 16167.0 157.0 18144.0 3599.0 4603.0 5597.0 7008.0 0
MA1101.2_shift0 (BACH2)				; oligos_8nt_mkv5_m25 versus MA1101.2 (BACH2); m=31/33; ncol2=19; w=12; offset=-3; strand=D; shift=0; score=0.558541; awasCATGAsTCATsvtwt ; cor=; Ncor= a 26746.0 38327.0 59307.0 12404.0 9369.0 62993.0 1.0 6.0 67846.0 50.0 3.0 115.0 68264.0 47.0 4522.0 19650.0 18457.0 23586.0 15261.0 c 12203.0 8823.0 5534.0 21218.0 61580.0 260.0 7.0 0.0 1088.0 37438.0 20.0 68215.0 2.0 11634.0 35220.0 17682.0 13438.0 10703.0 15623.0 g 13720.0 9605.0 8490.0 21257.0 6727.0 15304.0 1.0 68240.0 13.0 30785.0 856.0 0.0 11.0 2028.0 30498.0 19155.0 7650.0 8221.0 11268.0 t 15601.0 24469.0 15405.0 13391.0 8116.0 0.0 68266.0 54.0 6.0 18.0 67975.0 3.0 0.0 63746.0 5274.0 11783.0 54749.0 39012.0 26118.0
MA1113.2_rc_shift4 (PBX2_rc)				; oligos_8nt_mkv5_m25 versus MA1113.2_rc (PBX2_rc); m=32/33; ncol2=13; w=11; offset=1; strand=R; shift=4; score=0.551704; ----waTGATTTATgdy-- ; cor=; Ncor= a 0 0 0 0 9039.0 11594.0 2451.0 2849.0 28112.0 1014.0 1434.0 2145.0 28466.0 637.0 3441.0 9383.0 5745.0 0 0 c 0 0 0 0 5574.0 3952.0 352.0 555.0 327.0 569.0 343.0 817.0 317.0 1710.0 1585.0 3047.0 9625.0 0 0 g 0 0 0 0 7086.0 7057.0 848.0 23894.0 453.0 754.0 574.0 2266.0 588.0 629.0 19645.0 8859.0 5863.0 0 0 t 0 0 0 0 7897.0 6993.0 25945.0 2298.0 704.0 27259.0 27245.0 24368.0 225.0 26620.0 4925.0 8307.0 8363.0 0 0
MA0501.1_shift5 (MAF::NFE2)				; oligos_8nt_mkv5_m25 versus MA0501.1 (MAF::NFE2); m=33/33; ncol2=15; w=10; offset=2; strand=D; shift=5; score=0.469284; -----rTGACTCAGCArww ; cor=; Ncor= a 0 0 0 0 0 726.0 0.0 0.0 1090.0 16.0 110.0 80.0 978.0 8.0 0.0 931.0 383.0 361.0 292.0 c 0 0 0 0 0 26.0 0.0 0.0 0.0 871.0 1.0 937.0 0.0 4.0 1063.0 17.0 203.0 100.0 102.0 g 0 0 0 0 0 334.0 0.0 1082.0 0.0 166.0 12.0 22.0 51.0 1041.0 22.0 73.0 283.0 130.0 91.0 t 0 0 0 0 0 4.0 1090.0 8.0 0.0 37.0 967.0 51.0 61.0 37.0 5.0 69.0 221.0 499.0 605.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m8_shift3 (oligos_6nt_mkv3_m8oligos_6nt_mkv3_m8)				; oligos_6nt_mkv3_m8 (oligos_6nt_mkv3_m8oligos_6nt_mkv3_m8); m=0 (reference); ncol1=13; shift=3; ncol=17; ---csCCCCTCCCCss- ; Alignment reference a 0 0 0 94 114 19 7 4 13 30 8 1 4 31 114 91 0 c 0 0 0 274 216 525 598 626 619 46 628 636 625 550 260 241 0 g 0 0 0 146 178 59 17 10 6 78 5 8 13 13 171 179 0 t 0 0 0 135 141 46 27 9 11 495 8 4 7 55 104 138 0
MA1653.1_shift3 (ZNF148)				; oligos_6nt_mkv3_m8 versus MA1653.1 (ZNF148); m=1/17; ncol2=12; w=12; offset=0; strand=D; shift=3; score= 0.9017; ---ysCCCCTCCCcc-- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0
MA1522.1_shift3 (MAZ)				; oligos_6nt_mkv3_m8 versus MA1522.1 (MAZ); m=2/17; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.805041; ---ssCCCCTCCcc--- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0
MA0039.4_shift3 (KLF4)				; oligos_6nt_mkv3_m8 versus MA0039.4 (KLF4); m=3/17; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.779013; ---ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0
MA0753.2_shift3 (ZNF740)				; oligos_6nt_mkv3_m8 versus MA0753.2 (ZNF740); m=4/17; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.763959; ---cyrCCCCCCCCAc- ; cor=; Ncor= a 0 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 c 0 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 g 0 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 t 0 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0
MA0528.2_rc_shift4 (ZNF263_rc)				; oligos_6nt_mkv3_m8 versus MA0528.2_rc (ZNF263_rc); m=5/17; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.737896; ----csTCCTCCCcsc- ; cor=; Ncor= a 0 0 0 0 11103.0 6566.0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 8247.0 12535.0 9733.0 0 c 0 0 0 0 25115.0 24825.0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 28912.0 17883.0 20283.0 0 g 0 0 0 0 11689.0 15413.0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 6183.0 14909.0 13040.0 0 t 0 0 0 0 8436.0 9539.0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 13001.0 11016.0 13287.0 0
MA0746.2_shift3 (SP3)				; oligos_6nt_mkv3_m8 versus MA0746.2 (SP3); m=6/17; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.720002; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0
MA1513.1_shift4 (KLF15)				; oligos_6nt_mkv3_m8 versus MA1513.1 (KLF15); m=7/17; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.717458; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0
MA0599.1_shift4 (KLF5)				; oligos_6nt_mkv3_m8 versus MA0599.1 (KLF5); m=8/17; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.691599; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0
MA1564.1_shift4 (SP9)				; oligos_6nt_mkv3_m8 versus MA1564.1 (SP9); m=9/17; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.689695; ----rcCmCGCCCmcy- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0
MA0741.1_shift4 (KLF16)				; oligos_6nt_mkv3_m8 versus MA0741.1 (KLF16); m=10/17; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.669088; ----gmCMCgCCCMC-- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0
MA0747.1_shift4 (SP8)				; oligos_6nt_mkv3_m8 versus MA0747.1 (SP8); m=11/17; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.664588; ----rmCACgCCCmCy- ; cor=; Ncor= a 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 c 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 g 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 t 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0
MA1515.1_shift3 (KLF2)				; oligos_6nt_mkv3_m8 versus MA1515.1 (KLF2); m=12/17; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.641045; ---srCCmCrCCCw--- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0
MA0516.2_shift0 (SP2)				; oligos_6nt_mkv3_m8 versus MA0516.2 (SP2); m=13/17; ncol2=17; w=13; offset=-3; strand=D; shift=0; score=0.571712; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0
MA1578.1_shift6 (VEZF1)				; oligos_6nt_mkv3_m8 versus MA1578.1 (VEZF1); m=14/17; ncol2=10; w=10; offset=3; strand=D; shift=6; score=0.570369; ------CCCCCCmytw- ; cor=; Ncor= a 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 c 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 g 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 t 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0
MA1627.1_shift5 (Wt1)				; oligos_6nt_mkv3_m8 versus MA1627.1 (Wt1); m=15/17; ncol2=14; w=11; offset=2; strand=D; shift=5; score=0.565725; -----cycCTCCCCCAC ; cor=; Ncor= a 0 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 c 0 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 g 0 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 t 0 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0
MA0057.1_rc_shift2 (MZF1(var.2)_rc)				; oligos_6nt_mkv3_m8 versus MA0057.1_rc (MZF1(var.2)_rc); m=16/17; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.519328; --yymCCCMTmv----- ; cor=; Ncor= a 0 0 2.0 2.0 4.0 2.0 0.0 1.0 5.0 0.0 7.0 4.0 0 0 0 0 0 c 0 0 4.0 4.0 8.0 14.0 14.0 15.0 11.0 0.0 7.0 7.0 0 0 0 0 0 g 0 0 2.0 0.0 1.0 0.0 2.0 0.0 0.0 1.0 0.0 4.0 0 0 0 0 0 t 0 0 8.0 10.0 3.0 0.0 0.0 0.0 0.0 15.0 2.0 1.0 0 0 0 0 0
MA1630.1_rc_shift7 (Znf281_rc)				; oligos_6nt_mkv3_m8 versus MA1630.1_rc (Znf281_rc); m=17/17; ncol2=11; w=9; offset=4; strand=R; shift=7; score=0.507508; -------CcTCCCCCAc ; cor=; Ncor= a 0 0 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 c 0 0 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 g 0 0 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 t 0 0 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_6nt_m13_shift4 (local_words_6nt_m13local_words_6nt_m13)				; local_words_6nt_m13 (local_words_6nt_m13local_words_6nt_m13); m=0 (reference); ncol1=12; shift=4; ncol=18; ----srGCAGGTGCwg-- ; Alignment reference a 0 0 0 0 49 130 18 0 286 0 1 0 1 7 77 46 0 0 c 0 0 0 0 112 45 3 304 9 8 2 15 0 272 76 68 0 0 g 0 0 0 0 88 120 282 1 9 295 300 3 302 11 72 140 0 0 t 0 0 0 0 56 10 2 0 1 2 2 287 2 15 80 51 0 0
MA1631.1_rc_shift3 (ASCL1(var.2)_rc)				; local_words_6nt_m13 versus MA1631.1_rc (ASCL1(var.2)_rc); m=1/32; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.899616; ---gsrGCAGGTGchg-- ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0
MA0830.2_rc_shift3 (TCF4_rc)				; local_words_6nt_m13 versus MA0830.2_rc (TCF4_rc); m=2/32; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.898464; ---ssggCAGGTGccg-- ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0
MA1648.1_rc_shift4 (TCF12(var.2)_rc)				; local_words_6nt_m13 versus MA1648.1_rc (TCF12(var.2)_rc); m=3/32; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.867459; ----srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0
MA0522.3_rc_shift4 (TCF3_rc)				; local_words_6nt_m13 versus MA0522.3_rc (TCF3_rc); m=4/32; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.863662; ----ssGCAGGTGbs--- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0
MA0103.3_rc_shift4 (ZEB1_rc)				; local_words_6nt_m13 versus MA0103.3_rc (ZEB1_rc); m=5/32; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.825667; ----sssCAGGTGss--- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0 0 0
MA0745.2_rc_shift3 (SNAI2_rc)				; local_words_6nt_m13 versus MA0745.2_rc (SNAI2_rc); m=6/32; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.78539; ---rykACAGGTGcrt-- ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0
MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)				; local_words_6nt_m13 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=7/32; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.783419; ----rmaCAGGTGtky-- ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0
MA1558.1_shift5 (SNAI1)				; local_words_6nt_m13 versus MA1558.1 (SNAI1); m=8/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.778717; -----drCAGGTGyr--- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0 0 0
MA0499.2_rc_shift3 (MYOD1_rc)				; local_words_6nt_m13 versus MA0499.2_rc (MYOD1_rc); m=9/32; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.770704; ---rkrACAGGTGcwg-- ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0
MA1559.1_shift5 (SNAI3)				; local_words_6nt_m13 versus MA1559.1 (SNAI3); m=10/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.748999; -----arCAGGTGya--- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0
MA0500.2_rc_shift4 (MYOG_rc)				; local_words_6nt_m13 versus MA0500.2_rc (MYOG_rc); m=11/32; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.746517; ----sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0
MA0822.1_rc_shift4 (HES7_rc)				; local_words_6nt_m13 versus MA0822.1_rc (HES7_rc); m=12/32; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.739973; ----yGGCACGTGCCr-- ; cor=; Ncor= a 0 0 0 0 137.0 9.0 93.0 0.0 1864.0 1.0 0.0 0.0 3.0 2.0 3.0 863.0 0 0 c 0 0 0 0 734.0 9.0 5.0 1864.0 1.0 1864.0 0.0 7.0 0.0 1864.0 1864.0 43.0 0 0 g 0 0 0 0 47.0 1864.0 1864.0 1.0 3.0 1.0 1864.0 3.0 1864.0 29.0 19.0 790.0 0 0 t 0 0 0 0 946.0 0.0 8.0 2.0 3.0 4.0 0.0 1864.0 1.0 160.0 24.0 168.0 0 0
MA0821.1_rc_shift4 (HES5_rc)				; local_words_6nt_m13 versus MA0821.1_rc (HES5_rc); m=13/32; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.725214; ----yGGCACGTGyCr-- ; cor=; Ncor= a 0 0 0 0 279.0 14.0 267.0 0.0 1559.0 0.0 1.0 0.0 0.0 0.0 1.0 535.0 0 0 c 0 0 0 0 475.0 1.0 14.0 1559.0 0.0 1559.0 0.0 1.0 0.0 1559.0 1559.0 30.0 0 0 g 0 0 0 0 153.0 1559.0 1559.0 0.0 7.0 0.0 1559.0 0.0 1559.0 63.0 6.0 779.0 0 0 t 0 0 0 0 651.0 0.0 0.0 0.0 0.0 1.0 1.0 1559.0 0.0 764.0 47.0 216.0 0 0
MA1100.2_shift5 (ASCL1)				; local_words_6nt_m13 versus MA1100.2 (ASCL1); m=14/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.701734; -----rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0
MA0521.1_shift5 (Tcf12)				; local_words_6nt_m13 versus MA0521.1 (Tcf12); m=15/32; ncol2=11; w=11; offset=1; strand=D; shift=5; score=0.694116; -----rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0
MA1621.1_rc_shift3 (Rbpjl_rc)				; local_words_6nt_m13 versus MA1621.1_rc (Rbpjl_rc); m=16/32; ncol2=14; w=12; offset=-1; strand=R; shift=3; score=0.688176; ---grsaCAGGTGtkbs- ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0
MA0048.2_rc_shift5 (NHLH1_rc)				; local_words_6nt_m13 versus MA0048.2_rc (NHLH1_rc); m=17/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.67536; -----mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0
MA0820.1_rc_shift5 (FIGLA_rc)				; local_words_6nt_m13 versus MA0820.1_rc (FIGLA_rc); m=18/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.651698; -----wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0
MA0816.1_rc_shift5 (Ascl2_rc)				; local_words_6nt_m13 versus MA0816.1_rc (Ascl2_rc); m=19/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.650977; -----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0
MA1560.1_rc_shift5 (SOHLH2_rc)				; local_words_6nt_m13 versus MA1560.1_rc (SOHLH2_rc); m=20/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.642847; -----ygCACGTGcr--- ; cor=; Ncor= a 0 0 0 0 0 224.0 153.0 4.0 1212.0 15.0 7.0 0.0 70.0 276.0 313.0 0 0 0 c 0 0 0 0 0 369.0 172.0 1212.0 0.0 1212.0 11.0 41.0 29.0 1212.0 184.0 0 0 0 g 0 0 0 0 0 239.0 1212.0 4.0 65.0 0.0 1212.0 0.0 1212.0 264.0 485.0 0 0 0 t 0 0 0 0 0 381.0 272.0 41.0 36.0 14.0 0.0 1212.0 45.0 172.0 230.0 0 0 0
MA0616.2_shift5 (HES2)				; local_words_6nt_m13 versus MA0616.2 (HES2); m=21/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.61043; -----GgCACGTGyc--- ; cor=; Ncor= a 0 0 0 0 0 775.0 1501.0 118.0 6455.0 0.0 0.0 0.0 53.0 512.0 966.0 0 0 0 c 0 0 0 0 0 1193.0 1107.0 8483.0 0.0 8483.0 0.0 1098.0 15.0 4634.0 4464.0 0 0 0 g 0 0 0 0 0 8483.0 8483.0 85.0 2028.0 0.0 8483.0 0.0 8483.0 1289.0 1735.0 0 0 0 t 0 0 0 0 0 798.0 1581.0 73.0 0.0 129.0 0.0 8483.0 0.0 3849.0 1319.0 0 0 0
MA0825.1_shift5 (MNT)				; local_words_6nt_m13 versus MA0825.1 (MNT); m=22/32; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.599937; -----avCACGTGcy--- ; cor=; Ncor= a 0 0 0 0 0 279.0 187.0 27.0 681.0 0.0 15.0 0.0 0.0 150.0 159.0 0 0 0 c 0 0 0 0 0 128.0 228.0 681.0 0.0 681.0 0.0 0.0 0.0 281.0 229.0 0 0 0 g 0 0 0 0 0 145.0 203.0 0.0 0.0 7.0 681.0 15.0 681.0 131.0 75.0 0 0 0 t 0 0 0 0 0 129.0 63.0 5.0 21.0 16.0 0.0 681.0 25.0 120.0 219.0 0 0 0
MA0823.1_rc_shift5 (HEY1_rc)				; local_words_6nt_m13 versus MA0823.1_rc (HEY1_rc); m=23/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.599606; -----grCACGTGyc--- ; cor=; Ncor= a 0 0 0 0 0 318.0 863.0 22.0 3338.0 0.0 0.0 21.0 15.0 110.0 352.0 0 0 0 c 0 0 0 0 0 373.0 380.0 3338.0 10.0 3338.0 0.0 123.0 3.0 1199.0 1788.0 0 0 0 g 0 0 0 0 0 2172.0 1762.0 19.0 474.0 18.0 3338.0 30.0 3338.0 656.0 761.0 0 0 0 t 0 0 0 0 0 475.0 333.0 32.0 0.0 0.0 0.0 3338.0 1.0 1373.0 437.0 0 0 0
MA1635.1_rc_shift5 (BHLHE22(var.2)_rc)				; local_words_6nt_m13 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=24/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.598919; -----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0
MA0464.2_rc_shift5 (BHLHE40_rc)				; local_words_6nt_m13 versus MA0464.2_rc (BHLHE40_rc); m=25/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.597838; -----gkCACGTGmb--- ; cor=; Ncor= a 0 0 0 0 0 2587.0 500.0 72.0 11222.0 0.0 32.0 77.0 14.0 6222.0 1447.0 0 0 0 c 0 0 0 0 0 1385.0 129.0 11222.0 87.0 11222.0 2.0 78.0 0.0 5000.0 2926.0 0 0 0 g 0 0 0 0 0 5706.0 5295.0 12.0 248.0 30.0 11222.0 130.0 11222.0 481.0 3025.0 0 0 0 t 0 0 0 0 0 1544.0 5927.0 4.0 167.0 66.0 23.0 11222.0 59.0 1391.0 3824.0 0 0 0
MA0649.1_rc_shift5 (HEY2_rc)				; local_words_6nt_m13 versus MA0649.1_rc (HEY2_rc); m=26/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.585074; -----grCACGTGyC--- ; cor=; Ncor= a 0 0 0 0 0 264.0 753.0 30.0 1800.0 0.0 0.0 0.0 58.0 224.0 101.0 0 0 0 c 0 0 0 0 0 382.0 128.0 1800.0 0.0 1800.0 0.0 128.0 83.0 620.0 1800.0 0 0 0 g 0 0 0 0 0 869.0 1047.0 34.0 120.0 72.0 1800.0 0.0 1800.0 305.0 99.0 0 0 0 t 0 0 0 0 0 285.0 50.0 0.0 36.0 27.0 7.0 1800.0 84.0 651.0 107.0 0 0 0
MA0058.3_rc_shift5 (MAX_rc)				; local_words_6nt_m13 versus MA0058.3_rc (MAX_rc); m=27/32; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.584958; -----rgCACGTGkt--- ; cor=; Ncor= a 0 0 0 0 0 2543.0 1446.0 36.0 6876.0 19.0 229.0 38.0 0.0 637.0 719.0 0 0 0 c 0 0 0 0 0 986.0 1638.0 6876.0 20.0 6876.0 7.0 87.0 0.0 1514.0 1295.0 0 0 0 g 0 0 0 0 0 2225.0 2450.0 27.0 159.0 39.0 6876.0 0.0 6876.0 2809.0 1556.0 0 0 0 t 0 0 0 0 0 1122.0 1341.0 0.0 69.0 329.0 0.0 6876.0 39.0 1915.0 3307.0 0 0 0
MA0807.1_shift8 (TBX5)				; local_words_6nt_m13 versus MA0807.1 (TBX5); m=28/32; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.497884; --------AGGTGTkA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 0 0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 0 0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 0 0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0 0 0
MA1628.1_shift2 (Zic1::Zic2)				; local_words_6nt_m13 versus MA1628.1 (Zic1::Zic2); m=29/32; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.496836; --cvCAGCAGGsr----- ; cor=; Ncor= a 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 0 0 0 0 c 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 0 0 0 0 g 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 0 0 0 0 t 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0 0 0 0 0
MA0806.1_shift8 (TBX4)				; local_words_6nt_m13 versus MA0806.1 (TBX4); m=30/32; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.489379; --------AGGTGTgA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 0 0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 0 0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 0 0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0 0 0
MA1529.1_shift1 (NHLH2)				; local_words_6nt_m13 versus MA1529.1 (NHLH2); m=31/32; ncol2=18; w=12; offset=-3; strand=D; shift=1; score=0.485427; -ggGyMGCAGCTGCGyCm ; cor=; Ncor= a 0 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 c 0 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 g 0 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 t 0 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0
MA1629.1_shift0 (Zic2)				; local_words_6nt_m13 versus MA1629.1 (Zic2); m=32/32; ncol2=14; w=10; offset=-4; strand=D; shift=0; score=0.449541; mkCaCAGCAGGrrg---- ; cor=; Ncor= a 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0 0 0 0 0 c 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0 0 0 0 0 g 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0 0 0 0 0 t 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_6nt_m10_shift3 (local_words_6nt_m10local_words_6nt_m10)				; local_words_6nt_m10 (local_words_6nt_m10local_words_6nt_m10); m=0 (reference); ncol1=12; shift=3; ncol=18; ---crGCACCTGCys--- ; Alignment reference a 0 0 0 50 80 15 2 286 2 2 1 0 2 10 56 0 0 0 c 0 0 0 139 72 10 300 3 298 293 9 1 280 119 87 0 0 0 g 0 0 0 68 76 271 0 14 2 8 9 302 3 44 111 0 0 0 t 0 0 0 46 75 7 1 0 1 0 284 0 18 130 49 0 0 0
MA1631.1_shift3 (ASCL1(var.2))				; local_words_6nt_m10 versus MA1631.1 (ASCL1(var.2)); m=1/32; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.899425; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0
MA0830.2_shift3 (TCF4)				; local_words_6nt_m10 versus MA0830.2 (TCF4); m=2/32; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.898318; ---cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0
MA1648.1_shift4 (TCF12(var.2))				; local_words_6nt_m10 versus MA1648.1 (TCF12(var.2)); m=3/32; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.867078; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0
MA0522.3_shift4 (TCF3)				; local_words_6nt_m10 versus MA0522.3 (TCF3); m=4/32; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.863305; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0
MA0103.3_shift4 (ZEB1)				; local_words_6nt_m10 versus MA0103.3 (ZEB1); m=5/32; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.825355; ----ssCACCTGsss--- ; cor=; Ncor= a 0 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 c 0 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 g 0 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 t 0 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0
MA0745.2_shift3 (SNAI2)				; local_words_6nt_m10 versus MA0745.2 (SNAI2); m=6/32; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.785283; ---aygCACCTGTmry-- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0
MA1620.1_shift3 (Ptf1a(var.3))				; local_words_6nt_m10 versus MA1620.1 (Ptf1a(var.3)); m=7/32; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.78345; ---rmaCACCTGtky--- ; cor=; Ncor= a 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 c 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 g 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 t 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0
MA1558.1_rc_shift4 (SNAI1_rc)				; local_words_6nt_m10 versus MA1558.1_rc (SNAI1_rc); m=8/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.778501; ----yrCACCTGyh---- ; cor=; Ncor= a 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 c 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 g 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 t 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0
MA0499.2_shift3 (MYOD1)				; local_words_6nt_m10 versus MA0499.2 (MYOD1); m=9/32; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.770782; ---cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0
MA1559.1_rc_shift4 (SNAI3_rc)				; local_words_6nt_m10 versus MA1559.1_rc (SNAI3_rc); m=10/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.74868; ----trCACCTGyt---- ; cor=; Ncor= a 0 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 c 0 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 g 0 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 t 0 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0
MA0500.2_shift3 (MYOG)				; local_words_6nt_m10 versus MA0500.2 (MYOG); m=11/32; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.74675; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0
MA0822.1_shift3 (HES7)				; local_words_6nt_m10 versus MA0822.1 (HES7); m=12/32; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.740352; ---yGGCACGTGCCr--- ; cor=; Ncor= a 0 0 0 168.0 24.0 160.0 1.0 1864.0 0.0 4.0 3.0 2.0 8.0 0.0 946.0 0 0 0 c 0 0 0 790.0 19.0 29.0 1864.0 3.0 1864.0 1.0 3.0 1.0 1864.0 1864.0 47.0 0 0 0 g 0 0 0 43.0 1864.0 1864.0 0.0 7.0 0.0 1864.0 1.0 1864.0 5.0 9.0 734.0 0 0 0 t 0 0 0 863.0 3.0 2.0 3.0 0.0 0.0 1.0 1864.0 0.0 93.0 9.0 137.0 0 0 0
MA0821.1_shift3 (HES5)				; local_words_6nt_m10 versus MA0821.1 (HES5); m=13/32; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.725519; ---yGrCACGTGCCr--- ; cor=; Ncor= a 0 0 0 216.0 47.0 764.0 0.0 1559.0 1.0 1.0 0.0 0.0 0.0 0.0 651.0 0 0 0 c 0 0 0 779.0 6.0 63.0 1559.0 0.0 1559.0 0.0 7.0 0.0 1559.0 1559.0 153.0 0 0 0 g 0 0 0 30.0 1559.0 1559.0 0.0 1.0 0.0 1559.0 0.0 1559.0 14.0 1.0 475.0 0 0 0 t 0 0 0 535.0 1.0 0.0 0.0 0.0 1.0 0.0 1559.0 0.0 267.0 14.0 279.0 0 0 0
MA1100.2_rc_shift4 (ASCL1_rc)				; local_words_6nt_m10 versus MA1100.2_rc (ASCL1_rc); m=14/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.70187; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0
MA0521.1_rc_shift3 (Tcf12_rc)				; local_words_6nt_m10 versus MA0521.1_rc (Tcf12_rc); m=15/32; ncol2=11; w=11; offset=0; strand=R; shift=3; score=0.694143; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0
MA1621.1_shift2 (Rbpjl)				; local_words_6nt_m10 versus MA1621.1 (Rbpjl); m=16/32; ncol2=14; w=12; offset=-1; strand=D; shift=2; score=0.688191; --svmaCACCTGtsyc-- ; cor=; Ncor= a 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 c 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 g 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 t 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0
MA0048.2_shift4 (NHLH1)				; local_words_6nt_m10 versus MA0048.2 (NHLH1); m=17/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.675602; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0
MA0820.1_shift4 (FIGLA)				; local_words_6nt_m10 versus MA0820.1 (FIGLA); m=18/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.651592; ----wmCACCTGkw---- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0
MA0816.1_shift4 (Ascl2)				; local_words_6nt_m10 versus MA0816.1 (Ascl2); m=19/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.651371; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0
MA1560.1_shift4 (SOHLH2)				; local_words_6nt_m10 versus MA1560.1 (SOHLH2); m=20/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.642853; ----ygCACGTGcr---- ; cor=; Ncor= a 0 0 0 0 230.0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 381.0 0 0 0 0 c 0 0 0 0 485.0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 239.0 0 0 0 0 g 0 0 0 0 184.0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 369.0 0 0 0 0 t 0 0 0 0 313.0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0 224.0 0 0 0 0
MA0616.2_rc_shift4 (HES2_rc)				; local_words_6nt_m10 versus MA0616.2_rc (HES2_rc); m=21/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.610439; ----grCACGTGcC---- ; cor=; Ncor= a 0 0 0 0 1319.0 3849.0 0.0 8483.0 0.0 129.0 0.0 73.0 1581.0 798.0 0 0 0 0 c 0 0 0 0 1735.0 1289.0 8483.0 0.0 8483.0 0.0 2028.0 85.0 8483.0 8483.0 0 0 0 0 g 0 0 0 0 4464.0 4634.0 15.0 1098.0 0.0 8483.0 0.0 8483.0 1107.0 1193.0 0 0 0 0 t 0 0 0 0 966.0 512.0 53.0 0.0 0.0 0.0 6455.0 118.0 1501.0 775.0 0 0 0 0
MA0825.1_rc_shift4 (MNT_rc)				; local_words_6nt_m10 versus MA0825.1_rc (MNT_rc); m=22/32; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.600114; ----rgCACGTGbt---- ; cor=; Ncor= a 0 0 0 0 219.0 120.0 25.0 681.0 0.0 16.0 21.0 5.0 63.0 129.0 0 0 0 0 c 0 0 0 0 75.0 131.0 681.0 15.0 681.0 7.0 0.0 0.0 203.0 145.0 0 0 0 0 g 0 0 0 0 229.0 281.0 0.0 0.0 0.0 681.0 0.0 681.0 228.0 128.0 0 0 0 0 t 0 0 0 0 159.0 150.0 0.0 0.0 15.0 0.0 681.0 27.0 187.0 279.0 0 0 0 0
MA0823.1_shift4 (HEY1)				; local_words_6nt_m10 versus MA0823.1 (HEY1); m=23/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.599661; ----grCACGTGyc---- ; cor=; Ncor= a 0 0 0 0 437.0 1373.0 1.0 3338.0 0.0 0.0 0.0 32.0 333.0 475.0 0 0 0 0 c 0 0 0 0 761.0 656.0 3338.0 30.0 3338.0 18.0 474.0 19.0 1762.0 2172.0 0 0 0 0 g 0 0 0 0 1788.0 1199.0 3.0 123.0 0.0 3338.0 10.0 3338.0 380.0 373.0 0 0 0 0 t 0 0 0 0 352.0 110.0 15.0 21.0 0.0 0.0 3338.0 22.0 863.0 318.0 0 0 0 0
MA1635.1_shift4 (BHLHE22(var.2))				; local_words_6nt_m10 versus MA1635.1 (BHLHE22(var.2)); m=24/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.598826; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0
MA0464.2_shift4 (BHLHE40)				; local_words_6nt_m10 versus MA0464.2 (BHLHE40); m=25/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.598036; ----vkCACGTGmc---- ; cor=; Ncor= a 0 0 0 0 3824.0 1391.0 59.0 11222.0 23.0 66.0 167.0 4.0 5927.0 1544.0 0 0 0 0 c 0 0 0 0 3025.0 481.0 11222.0 130.0 11222.0 30.0 248.0 12.0 5295.0 5706.0 0 0 0 0 g 0 0 0 0 2926.0 5000.0 0.0 78.0 2.0 11222.0 87.0 11222.0 129.0 1385.0 0 0 0 0 t 0 0 0 0 1447.0 6222.0 14.0 77.0 32.0 0.0 11222.0 72.0 500.0 2587.0 0 0 0 0
MA0649.1_shift4 (HEY2)				; local_words_6nt_m10 versus MA0649.1 (HEY2); m=26/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.585196; ----GrCACGTGyc---- ; cor=; Ncor= a 0 0 0 0 107.0 651.0 84.0 1800.0 7.0 27.0 36.0 0.0 50.0 285.0 0 0 0 0 c 0 0 0 0 99.0 305.0 1800.0 0.0 1800.0 72.0 120.0 34.0 1047.0 869.0 0 0 0 0 g 0 0 0 0 1800.0 620.0 83.0 128.0 0.0 1800.0 0.0 1800.0 128.0 382.0 0 0 0 0 t 0 0 0 0 101.0 224.0 58.0 0.0 0.0 0.0 1800.0 30.0 753.0 264.0 0 0 0 0
MA0058.3_shift4 (MAX)				; local_words_6nt_m10 versus MA0058.3 (MAX); m=27/32; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.585059; ----amCACGTGcy---- ; cor=; Ncor= a 0 0 0 0 3307.0 1915.0 39.0 6876.0 0.0 329.0 69.0 0.0 1341.0 1122.0 0 0 0 0 c 0 0 0 0 1556.0 2809.0 6876.0 0.0 6876.0 39.0 159.0 27.0 2450.0 2225.0 0 0 0 0 g 0 0 0 0 1295.0 1514.0 0.0 87.0 7.0 6876.0 20.0 6876.0 1638.0 986.0 0 0 0 0 t 0 0 0 0 719.0 637.0 0.0 38.0 229.0 19.0 6876.0 36.0 1446.0 2543.0 0 0 0 0
MA0807.1_rc_shift3 (TBX5_rc)				; local_words_6nt_m10 versus MA0807.1_rc (TBX5_rc); m=28/32; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.498072; ---TmACACCT------- ; cor=; Ncor= a 0 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 0 c 0 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 0 g 0 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 0 t 0 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0 0
MA1628.1_rc_shift6 (Zic1::Zic2_rc)				; local_words_6nt_m10 versus MA1628.1_rc (Zic1::Zic2_rc); m=29/32; ncol2=11; w=9; offset=3; strand=R; shift=6; score=0.496725; ------ysCCTGCTGbg- ; cor=; Ncor= a 0 0 0 0 0 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 0 c 0 0 0 0 0 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 0 g 0 0 0 0 0 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 0 t 0 0 0 0 0 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0 0
MA0806.1_rc_shift3 (TBX4_rc)				; local_words_6nt_m10 versus MA0806.1_rc (TBX4_rc); m=30/32; ncol2=8; w=8; offset=0; strand=R; shift=3; score=0.489638; ---TcACACCT------- ; cor=; Ncor= a 0 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 0 0 0 c 0 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 0 0 0 g 0 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 0 0 0 t 0 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0 0 0 0
MA1529.1_rc_shift0 (NHLH2_rc)				; local_words_6nt_m10 versus MA1529.1_rc (NHLH2_rc); m=31/32; ncol2=18; w=12; offset=-3; strand=R; shift=0; score=0.485552; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0
MA1629.1_rc_shift5 (Zic2_rc)				; local_words_6nt_m10 versus MA1629.1_rc (Zic2_rc); m=32/32; ncol2=14; w=10; offset=2; strand=R; shift=5; score=0.449218; -----cyyCCTGCTGtGm ; cor=; Ncor= a 0 0 0 0 0 2104.0 1641.0 2472.0 154.0 410.0 441.0 298.0 67.0 268.0 120.0 2437.0 240.0 3893.0 c 0 0 0 0 0 5314.0 4979.0 4911.0 11465.0 11184.0 735.0 269.0 11484.0 186.0 188.0 829.0 585.0 3821.0 g 0 0 0 0 0 2168.0 1661.0 1476.0 204.0 133.0 118.0 11272.0 228.0 391.0 11476.0 1765.0 9933.0 1755.0 t 0 0 0 0 0 2333.0 3638.0 3060.0 96.0 192.0 10625.0 80.0 140.0 11074.0 135.0 6888.0 1161.0 2450.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m2_shift0 (oligos_7nt_mkv4_m2oligos_7nt_mkv4_m2)				; oligos_7nt_mkv4_m2 (oligos_7nt_mkv4_m2oligos_7nt_mkv4_m2); m=0 (reference); ncol1=14; shift=0; ncol=20; sctGCAsCTGTCmc------ ; Alignment reference a 85 71 48 30 1 409 4 7 2 0 3 4 120 50 0 0 0 0 0 0 c 135 167 52 44 419 3 283 408 3 3 8 357 124 185 0 0 0 0 0 0 g 113 98 48 335 0 4 120 3 1 415 5 17 91 93 0 0 0 0 0 0 t 87 84 272 11 0 4 13 2 414 2 404 42 85 92 0 0 0 0 0 0
MA0499.2_shift1 (MYOD1)				; oligos_7nt_mkv4_m2 versus MA0499.2 (MYOD1); m=1/33; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.897997; -cwgCACCTGTymy------ ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 0 0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 0 0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 0 0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0 0 0 0
MA0745.2_shift1 (SNAI2)				; oligos_7nt_mkv4_m2 versus MA0745.2 (SNAI2); m=2/33; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.862169; -aygCACCTGTmry------ ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 0 0 0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 0 0 0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 0 0 0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0 0 0 0 0
MA1621.1_shift0 (Rbpjl)				; oligos_7nt_mkv4_m2 versus MA1621.1 (Rbpjl); m=3/33; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.831557; svmaCACCTGtsyc------ ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 0 0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 0 0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 0 0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0 0 0 0
MA0830.2_shift1 (TCF4)				; oligos_7nt_mkv4_m2 versus MA0830.2 (TCF4); m=4/33; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.772913; -cggCACCTGccss------ ; cor=; Ncor= a 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 0 0 0 0 c 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 0 0 0 0 g 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 0 0 0 0 t 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0 0 0 0 0
MA1631.1_shift1 (ASCL1(var.2))				; oligos_7nt_mkv4_m2 versus MA1631.1 (ASCL1(var.2)); m=5/33; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.751607; -cdgCACCTGCysc------ ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 0 0 0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 0 0 0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 0 0 0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0 0 0 0
MA1620.1_shift1 (Ptf1a(var.3))				; oligos_7nt_mkv4_m2 versus MA1620.1 (Ptf1a(var.3)); m=6/33; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.703686; -rmaCACCTGtky------- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 0 0 0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 0 0 0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 0 0 0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0 0 0 0 0
MA0521.1_rc_shift1 (Tcf12_rc)				; oligos_7nt_mkv4_m2 versus MA0521.1_rc (Tcf12_rc); m=7/33; ncol2=11; w=11; offset=1; strand=R; shift=1; score= 0.6788; -cwsCAGCTGYy-------- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0 0
MA1618.1_rc_shift0 (Ptf1a_rc)				; oligos_7nt_mkv4_m2 versus MA1618.1_rc (Ptf1a_rc); m=8/33; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.650551; dmaaCATCTGtkh------- ; cor=; Ncor= a 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 0 0 0 0 c 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 0 0 0 0 g 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 0 0 0 0 t 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0 0 0 0 0
MA0500.2_shift1 (MYOG)				; oligos_7nt_mkv4_m2 versus MA0500.2 (MYOG); m=9/33; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.647656; -sarCAGCTGyts------- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0 0 0
MA1619.1_shift1 (Ptf1a(var.2))				; oligos_7nt_mkv4_m2 versus MA1619.1 (Ptf1a(var.2)); m=10/33; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.647333; -rmaCAGCTGtky------- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0 0 0
MA1641.1_rc_shift1 (MYF5_rc)				; oligos_7nt_mkv4_m2 versus MA1641.1_rc (MYF5_rc); m=11/33; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.646371; -gvaCAGCTGtbc------- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 0 0 0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 0 0 0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0 0 0 0 0
MA1559.1_rc_shift2 (SNAI3_rc)				; oligos_7nt_mkv4_m2 versus MA1559.1_rc (SNAI3_rc); m=12/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.642604; --trCACCTGyt-------- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 0 0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 0 0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 0 0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0 0 0 0 0
MA0103.3_shift2 (ZEB1)				; oligos_7nt_mkv4_m2 versus MA0103.3 (ZEB1); m=13/33; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.614515; --ssCACCTGsss------- ; cor=; Ncor= a 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 0 0 0 0 c 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 0 0 0 0 g 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 0 0 0 0 t 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0 0 0 0 0
MA0783.1_rc_shift1 (PKNOX2_rc)				; oligos_7nt_mkv4_m2 versus MA0783.1_rc (PKNOX2_rc); m=14/33; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.612015; -TGACAsCTGTCA------- ; cor=; Ncor= a 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 0 0 0 0 c 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 0 0 0 0 g 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 0 0 0 0 t 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0 0 0 0 0
MA1558.1_rc_shift2 (SNAI1_rc)				; oligos_7nt_mkv4_m2 versus MA1558.1_rc (SNAI1_rc); m=15/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.596558; --yrCACCTGyh-------- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 0 0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 0 0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 0 0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0 0 0 0 0
MA0820.1_shift2 (FIGLA)				; oligos_7nt_mkv4_m2 versus MA0820.1 (FIGLA); m=16/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.569127; --wmCACCTGkw-------- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0 0 0 0
MA1100.2_rc_shift2 (ASCL1_rc)				; oligos_7nt_mkv4_m2 versus MA1100.2_rc (ASCL1_rc); m=17/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.567995; --rgCAGCTGyy-------- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0 0 0
MA1648.1_shift2 (TCF12(var.2))				; oligos_7nt_mkv4_m2 versus MA1648.1 (TCF12(var.2)); m=18/33; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.565349; --ssCACCTGCys------- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 0 0 0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 0 0 0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 0 0 0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0 0 0 0 0
MA0522.3_shift2 (TCF3)				; oligos_7nt_mkv4_m2 versus MA0522.3 (TCF3); m=19/33; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.560099; --svCACCTGCss------- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 0 0 0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 0 0 0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 0 0 0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0 0 0 0 0
MA0744.2_rc_shift1 (SCRT2_rc)				; oligos_7nt_mkv4_m2 versus MA0744.2_rc (SCRT2_rc); m=20/33; ncol2=16; w=13; offset=1; strand=R; shift=1; score=0.546238; -waccACCTGTTGmwyy--- ; cor=; Ncor= a 0 21453.0 18751.0 15588.0 11335.0 58889.0 2140.0 1471.0 1184.0 204.0 953.0 4384.0 3732.0 17252.0 16873.0 12071.0 15730.0 0 0 0 c 0 12430.0 14716.0 25288.0 38133.0 1168.0 60636.0 56105.0 252.0 319.0 1878.0 2265.0 1339.0 35769.0 12473.0 17497.0 17680.0 0 0 0 g 0 13846.0 16085.0 11351.0 5661.0 3475.0 972.0 728.0 294.0 64856.0 413.0 5536.0 59161.0 7236.0 6319.0 12732.0 13345.0 0 0 0 t 0 17881.0 16058.0 13383.0 10481.0 2078.0 1862.0 7306.0 63880.0 231.0 62366.0 53425.0 1378.0 5353.0 29945.0 23310.0 18855.0 0 0 0
MA0743.2_rc_shift1 (SCRT1_rc)				; oligos_7nt_mkv4_m2 versus MA0743.2_rc (SCRT1_rc); m=21/33; ncol2=16; w=13; offset=1; strand=R; shift=1; score=0.541842; -wacCACCTGTTGmwtw--- ; cor=; Ncor= a 0 19839.0 18454.0 13726.0 7910.0 57969.0 1579.0 1305.0 1058.0 215.0 1002.0 4017.0 2621.0 31975.0 24326.0 12449.0 15464.0 0 0 0 c 0 11049.0 13470.0 26973.0 41190.0 259.0 56500.0 51330.0 159.0 224.0 1566.0 1835.0 1297.0 16396.0 10154.0 14514.0 14307.0 0 0 0 g 0 12837.0 14903.0 8788.0 3296.0 1098.0 466.0 557.0 234.0 59557.0 370.0 8751.0 54835.0 7425.0 8693.0 10314.0 14118.0 0 0 0 t 0 16484.0 13382.0 10722.0 7813.0 883.0 1664.0 7017.0 58758.0 213.0 57271.0 45606.0 1456.0 4413.0 17036.0 22932.0 16320.0 0 0 0
MA1467.1_shift2 (ATOH1(var.2))				; oligos_7nt_mkv4_m2 versus MA1467.1 (ATOH1(var.2)); m=22/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.538082; --AACAGCTGTY-------- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0 0 0
MA1472.1_shift2 (BHLHA15(var.2))				; oligos_7nt_mkv4_m2 versus MA1472.1 (BHLHA15(var.2)); m=23/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.536827; --avCAGCTGyy-------- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0 0 0 0
MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)				; oligos_7nt_mkv4_m2 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=24/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.532022; --csCAGCTGsg-------- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0 0 0
MA0816.1_rc_shift2 (Ascl2_rc)				; oligos_7nt_mkv4_m2 versus MA0816.1_rc (Ascl2_rc); m=25/33; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.51665; --rrCAGCTGyt-------- ; cor=; Ncor= a 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 0 0 0 0 c 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 0 0 0 0 g 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 0 0 0 0 t 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0 0 0 0 0
MA1493.1_shift2 (HES6)				; oligos_7nt_mkv4_m2 versus MA1493.1 (HES6); m=26/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.507492; --GGCACGTGTy-------- ; cor=; Ncor= a 0 0 12.0 16.0 17.0 439.0 2.0 10.0 0.0 0.0 33.0 79.0 0 0 0 0 0 0 0 0 c 0 0 39.0 35.0 439.0 0.0 439.0 12.0 7.0 0.0 21.0 152.0 0 0 0 0 0 0 0 0 g 0 0 439.0 439.0 19.0 9.0 9.0 439.0 29.0 439.0 0.0 0.0 0 0 0 0 0 0 0 0 t 0 0 43.0 13.0 15.0 11.0 16.0 0.0 439.0 0.0 439.0 209.0 0 0 0 0 0 0 0 0
MA0626.1_shift2 (Npas2)				; oligos_7nt_mkv4_m2 versus MA0626.1 (Npas2); m=27/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.50252; --dsCACGTGtm-------- ; cor=; Ncor= a 0 0 273.0 154.0 0.0 999.0 81.0 81.0 0.0 81.0 74.0 297.0 0 0 0 0 0 0 0 0 c 0 0 177.0 377.0 999.0 0.0 918.0 0.0 0.0 0.0 172.0 299.0 0 0 0 0 0 0 0 0 g 0 0 293.0 420.0 0.0 0.0 0.0 918.0 0.0 918.0 188.0 202.0 0 0 0 0 0 0 0 0 t 0 0 257.0 48.0 0.0 0.0 0.0 0.0 999.0 0.0 566.0 202.0 0 0 0 0 0 0 0 0
MA0100.3_shift2 (MYB)				; oligos_7nt_mkv4_m2 versus MA0100.3 (MYB); m=28/33; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.500371; --mbCAACTGhm-------- ; cor=; Ncor= a 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 0 0 0 0 0 0 c 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 0 0 0 0 0 0 g 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 0 0 0 0 0 0 t 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0 0 0 0 0 0 0
MA0774.1_rc_shift6 (MEIS2_rc)				; oligos_7nt_mkv4_m2 versus MA0774.1_rc (MEIS2_rc); m=29/33; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.495505; ------sCTGTCAa------ ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 0 0 0 0 0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 0 0 0 0 0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 0 0 0 0 0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0 0 0 0 0 0
MA0775.1_rc_shift6 (MEIS3_rc)				; oligos_7nt_mkv4_m2 versus MA0775.1_rc (MEIS3_rc); m=30/33; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.487569; ------scTGTCAw------ ; cor=; Ncor= a 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 0 0 0 0 0 c 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 0 0 0 0 0 g 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 0 0 0 0 0 t 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0 0 0 0 0 0
MA0498.2_rc_shift7 (MEIS1_rc)				; oligos_7nt_mkv4_m2 versus MA0498.2_rc (MEIS1_rc); m=31/33; ncol2=7; w=7; offset=7; strand=R; shift=7; score=0.419131; -------cTGTCAw------ ; cor=; Ncor= a 0 0 0 0 0 0 0 15106.0 3861.0 1155.0 0.0 0.0 77159.0 24921.0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 29965.0 9263.0 0.0 672.0 77159.0 3174.0 9714.0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 14864.0 0.0 77159.0 2903.0 1249.0 5575.0 18797.0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 17224.0 77159.0 0.0 77159.0 0.0 8690.0 23727.0 0 0 0 0 0 0
MA0622.1_shift3 (Mlxip)				; oligos_7nt_mkv4_m2 versus MA0622.1 (Mlxip); m=32/33; ncol2=8; w=8; offset=3; strand=D; shift=3; score=0.414256; ---bCACGTGk--------- ; cor=; Ncor= a 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 0 0 0 0 0 0 0 0 0 c 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 0 0 0 0 0 0 0 0 0 g 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 0 0 0 0 0 0 0 0 0 t 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0 0 0 0 0 0 0 0 0 0
MA1114.1_rc_shift3 (PBX3_rc)				; oligos_7nt_mkv4_m2 versus MA1114.1_rc (PBX3_rc); m=33/33; ncol2=17; w=11; offset=3; strand=R; shift=3; score=0.404432; ---sygcCTGTCACTCAvmc ; cor=; Ncor= a 0 0 0 1508.0 1465.0 1525.0 683.0 549.0 376.0 138.0 145.0 83.0 6290.0 969.0 256.0 160.0 5697.0 1924.0 1853.0 1523.0 c 0 0 0 2217.0 2068.0 1591.0 4077.0 5691.0 425.0 209.0 604.0 6550.0 285.0 4929.0 214.0 6406.0 503.0 1928.0 1934.0 2192.0 g 0 0 0 1801.0 1619.0 2654.0 1377.0 412.0 129.0 6524.0 108.0 242.0 199.0 788.0 125.0 227.0 225.0 1849.0 1724.0 1711.0 t 0 0 0 1495.0 1869.0 1251.0 884.0 369.0 6091.0 150.0 6164.0 146.0 247.0 335.0 6426.0 228.0 596.0 1320.0 1510.0 1595.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m44_shift2 (oligos_7nt_mkv4_m44oligos_7nt_mkv4_m44)				; oligos_7nt_mkv4_m44 (oligos_7nt_mkv4_m44oligos_7nt_mkv4_m44); m=0 (reference); ncol1=12; shift=2; ncol=14; --vaAACCACArvc ; Alignment reference a 0 0 89 126 319 306 9 11 312 7 321 182 86 79 c 0 0 100 80 1 12 317 314 8 314 5 43 86 108 g 0 0 84 58 8 6 3 1 8 6 2 88 91 81 t 0 0 60 69 5 9 4 7 5 6 5 20 70 65
MA0684.2_shift2 (RUNX3)				; oligos_7nt_mkv4_m44 versus MA0684.2 (RUNX3); m=1/5; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.875527; --awAACCTCAawh ; cor=; Ncor= a 0 0 7768.0 9558.0 19136.0 26243.0 427.0 495.0 6357.0 611.0 26121.0 16137.0 8778.0 6879.0 c 0 0 6083.0 5007.0 2662.0 315.0 26293.0 26208.0 419.0 26015.0 414.0 3077.0 5994.0 6900.0 g 0 0 6685.0 3547.0 3500.0 431.0 198.0 385.0 1911.0 390.0 338.0 4696.0 5642.0 6372.0 t 0 0 6841.0 9265.0 2079.0 388.0 459.0 289.0 18690.0 361.0 504.0 3467.0 6963.0 7226.0
MA0002.2_rc_shift3 (RUNX1_rc)				; oligos_7nt_mkv4_m44 versus MA0002.2_rc (RUNX1_rc); m=2/5; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.871324; ---waaCCACAram ; cor=; Ncor= a 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 c 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 g 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 t 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0
MA0511.2_shift3 (RUNX2)				; oligos_7nt_mkv4_m44 versus MA0511.2 (RUNX2); m=3/5; ncol2=9; w=9; offset=1; strand=D; shift=3; score=0.662975; ---wAACCRCAa-- ; cor=; Ncor= a 0 0 0 3872.0 6621.0 6621.0 0.0 0.0 1914.0 0.0 6621.0 4202.0 0 0 c 0 0 0 1092.0 556.0 325.0 6621.0 6621.0 36.0 6621.0 476.0 677.0 0 0 g 0 0 0 326.0 1215.0 0.0 0.0 0.0 4707.0 0.0 458.0 1134.0 0 0 t 0 0 0 2748.0 582.0 0.0 0.0 0.0 120.0 0.0 191.0 607.0 0 0
MA0479.1_shift0 (FOXH1)				; oligos_7nt_mkv4_m44 versus MA0479.1 (FOXH1); m=4/5; ncol2=11; w=9; offset=-2; strand=D; shift=0; score=0.470522; ybsAATMCACA--- ; cor=; Ncor= a 939.0 1578.0 973.0 8211.0 7547.0 0.0 2374.0 1414.0 8211.0 0.0 7138.0 0 0 0 c 2840.0 2333.0 3261.0 0.0 0.0 0.0 5773.0 6797.0 0.0 8211.0 0.0 0 0 0 g 1490.0 2137.0 3156.0 0.0 229.0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0 t 2942.0 2163.0 821.0 0.0 435.0 8211.0 64.0 0.0 0.0 0.0 1073.0 0 0 0
MA0130.1_shift4 (ZNF354C)				; oligos_7nt_mkv4_m44 versus MA0130.1 (ZNF354C); m=5/5; ncol2=6; w=6; offset=2; strand=D; shift=4; score=0.400493; ----mTCCAC---- ; cor=; Ncor= a 0 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 c 0 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 g 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 t 0 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv5_m21_shift2 (oligos_8nt_mkv5_m21oligos_8nt_mkv5_m21)				; oligos_8nt_mkv5_m21 (oligos_8nt_mkv5_m21oligos_8nt_mkv5_m21); m=0 (reference); ncol1=12; shift=2; ncol=18; --vsCCACACCCcs---- ; Alignment reference a 0 0 56 41 3 2 181 4 188 0 0 0 43 48 0 0 0 0 c 0 0 58 51 192 193 14 191 3 198 199 198 63 60 0 0 0 0 g 0 0 55 65 1 8 8 3 12 1 5 6 48 59 0 0 0 0 t 0 0 35 47 8 1 1 6 1 5 0 0 50 37 0 0 0 0
MA0039.4_shift2 (KLF4)				; oligos_8nt_mkv5_m21 versus MA0039.4 (KLF4); m=1/21; ncol2=12; w=12; offset=0; strand=D; shift=2; score= 0.8753; --ssCCCCACCChs---- ; cor=; Ncor= a 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 0 0 c 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 0 0 g 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 0 0 t 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0 0 0
MA0493.1_shift2 (Klf1)				; oligos_8nt_mkv5_m21 versus MA0493.1 (Klf1); m=2/21; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.863515; --rrCCACACCCw----- ; cor=; Ncor= a 0 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 0 0 c 0 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 0 0 g 0 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 0 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0 0 0
MA1511.1_shift3 (KLF10)				; oligos_8nt_mkv5_m21 versus MA1511.1 (KLF10); m=3/21; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.839044; ---gmCACrCCCmy---- ; cor=; Ncor= a 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 0 0 c 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 0 0 g 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 0 0 t 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0 0 0
MA1515.1_shift2 (KLF2)				; oligos_8nt_mkv5_m21 versus MA1515.1 (KLF2); m=4/21; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.823421; --srCCmCrCCCw----- ; cor=; Ncor= a 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 0 0 c 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 0 0 g 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 0 0 t 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0 0 0
MA1517.1_shift2 (KLF6)				; oligos_8nt_mkv5_m21 versus MA1517.1 (KLF6); m=5/21; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.810447; --srcCACRCCCm----- ; cor=; Ncor= a 0 0 443.0 1035.0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 0 0 c 0 0 624.0 490.0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 0 0 g 0 0 626.0 1157.0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 0 0 t 0 0 499.0 136.0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0 0 0
MA1512.1_shift3 (KLF11)				; oligos_8nt_mkv5_m21 versus MA1512.1 (KLF11); m=6/21; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.762644; ---gcCACGCCCmC---- ; cor=; Ncor= a 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 0 c 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 0 g 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 0 t 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0 0
MA0746.2_shift2 (SP3)				; oligos_8nt_mkv5_m21 versus MA0746.2 (SP3); m=7/21; ncol2=13; w=12; offset=0; strand=D; shift=2; score=0.747127; --srCCACGCCCmCy--- ; cor=; Ncor= a 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 0 0 c 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 0 0 g 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 0 0 t 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0 0 0
MA0741.1_shift3 (KLF16)				; oligos_8nt_mkv5_m21 versus MA0741.1 (KLF16); m=8/21; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.746414; ---gmCMCgCCCMC---- ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0 0
MA1516.1_shift2 (KLF3)				; oligos_8nt_mkv5_m21 versus MA1516.1 (KLF3); m=9/21; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.73462; --grCCrCGCCCw----- ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 0 0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 0 0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 0 0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0 0 0 0
MA0599.1_shift3 (KLF5)				; oligos_8nt_mkv5_m21 versus MA0599.1 (KLF5); m=10/21; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.709757; ---gCCMCrCCCh----- ; cor=; Ncor= a 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 0 c 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 0 g 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0 0
MA0747.1_shift3 (SP8)				; oligos_8nt_mkv5_m21 versus MA0747.1 (SP8); m=11/21; ncol2=12; w=11; offset=1; strand=D; shift=3; score=0.689471; ---rmCACgCCCmCy--- ; cor=; Ncor= a 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 0 0 c 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 0 0 g 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 0 0 t 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0 0 0
MA1107.2_shift1 (KLF9)				; oligos_8nt_mkv5_m21 versus MA1107.2 (KLF9); m=12/21; ncol2=16; w=12; offset=-1; strand=D; shift=1; score=0.674021; -crgCCACACCCAChyc- ; cor=; Ncor= a 0 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 5875.0 0 c 0 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 9519.0 0 g 0 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 5681.0 0 t 0 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0 4504.0 0
MA1564.1_shift3 (SP9)				; oligos_8nt_mkv5_m21 versus MA1564.1 (SP9); m=13/21; ncol2=12; w=11; offset=1; strand=D; shift=3; score=0.67079; ---rcCmCGCCCmcy--- ; cor=; Ncor= a 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 0 0 c 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 0 0 g 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 0 0 t 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0 0 0
MA0742.1_shift2 (Klf12)				; oligos_8nt_mkv5_m21 versus MA0742.1 (Klf12); m=14/21; ncol2=15; w=12; offset=0; strand=D; shift=2; score=0.655051; --GrCCACGCCCwthtw- ; cor=; Ncor= a 0 0 167.0 553.0 19.0 5.0 853.0 9.0 215.0 0.0 0.0 0.0 410.0 238.0 308.0 238.0 271.0 0 c 0 0 35.0 11.0 668.0 670.0 27.0 675.0 1.0 687.0 706.0 715.0 120.0 219.0 239.0 186.0 210.0 0 g 0 0 1158.0 531.0 8.0 12.0 2.0 0.0 1348.0 0.0 9.0 0.0 0.0 99.0 84.0 117.0 141.0 0 t 0 0 225.0 0.0 9.0 3.0 0.0 4.0 16.0 4.0 13.0 13.0 483.0 403.0 290.0 429.0 330.0 0
MA0740.1_shift2 (KLF14)				; oligos_8nt_mkv5_m21 versus MA0740.1 (KLF14); m=15/21; ncol2=14; w=12; offset=0; strand=D; shift=2; score=0.647524; --krcCACGCCCmYyt-- ; cor=; Ncor= a 0 0 430.0 1205.0 526.0 0.0 1708.0 2.0 69.0 0.0 0.0 0.0 716.0 32.0 280.0 649.0 0 0 c 0 0 215.0 73.0 1360.0 1599.0 136.0 1596.0 36.0 1602.0 1604.0 1609.0 961.0 1463.0 594.0 741.0 0 0 g 0 0 966.0 2280.0 96.0 10.0 58.0 0.0 2939.0 3.0 3.0 4.0 1.0 15.0 89.0 314.0 0 0 t 0 0 693.0 71.0 404.0 248.0 5.0 2.0 31.0 0.0 6.0 65.0 31.0 559.0 1041.0 1670.0 0 0
MA1566.1_rc_shift3 (TBX3_rc)				; oligos_8nt_mkv5_m21 versus MA1566.1_rc (TBX3_rc); m=16/21; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.623128; ---ttsACACcty----- ; cor=; Ncor= a 0 0 0 578.0 484.0 1112.0 2544.0 0.0 2544.0 0.0 302.0 760.0 497.0 0 0 0 0 0 c 0 0 0 620.0 947.0 2544.0 155.0 2544.0 0.0 2544.0 2544.0 1207.0 1003.0 0 0 0 0 0 g 0 0 0 586.0 410.0 1471.0 634.0 0.0 735.0 45.0 862.0 481.0 399.0 0 0 0 0 0 t 0 0 0 760.0 2544.0 170.0 115.0 0.0 16.0 6.0 427.0 2544.0 644.0 0 0 0 0 0
MA0079.4_shift0 (SP1)				; oligos_8nt_mkv5_m21 versus MA0079.4 (SP1); m=17/21; ncol2=15; w=12; offset=-2; strand=D; shift=0; score=0.620604; ywrRCCACGCCCmCh--- ; cor=; Ncor= a 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 0 0 c 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 0 0 g 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 0 0 t 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0 0 0
MA0685.1_shift0 (SP4)				; oligos_8nt_mkv5_m21 versus MA0685.1 (SP4); m=18/21; ncol2=17; w=12; offset=-2; strand=D; shift=0; score=0.537842; ywrGCCACGCCCmCtyy- ; cor=; Ncor= a 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 967.0 0 c 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 1180.0 0 g 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 556.0 0 t 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0 1509.0 0
MA0657.1_shift1 (KLF13)				; oligos_8nt_mkv5_m21 versus MA0657.1 (KLF13); m=19/21; ncol2=18; w=12; offset=-1; strand=D; shift=1; score=0.486187; -rtRmCACGCCCCYTTtt ; cor=; Ncor= a 0 1508.0 733.0 1891.0 496.0 75.0 2384.0 0.0 24.0 0.0 4.0 1.0 509.0 3.0 156.0 247.0 735.0 404.0 c 0 248.0 46.0 0.0 923.0 924.0 0.0 1353.0 2.0 1596.0 1469.0 1760.0 1766.0 638.0 350.0 235.0 554.0 176.0 g 0 915.0 796.0 4630.0 58.0 2.0 11.0 7.0 3028.0 0.0 0.0 0.0 0.0 3.0 54.0 270.0 841.0 483.0 t 0 590.0 1766.0 59.0 102.0 61.0 0.0 3.0 9.0 7.0 0.0 16.0 10.0 1403.0 2040.0 2968.0 2247.0 1672.0
MA0807.1_rc_shift4 (TBX5_rc)				; oligos_8nt_mkv5_m21 versus MA0807.1_rc (TBX5_rc); m=20/21; ncol2=8; w=8; offset=2; strand=R; shift=4; score=0.468071; ----TmACACCT------ ; cor=; Ncor= a 0 0 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 c 0 0 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 g 0 0 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 t 0 0 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0
MA0130.1_shift2 (ZNF354C)				; oligos_8nt_mkv5_m21 versus MA0130.1 (ZNF354C); m=21/21; ncol2=6; w=6; offset=0; strand=D; shift=2; score=0.467186; --mTCCAC---------- ; cor=; Ncor= a 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 0 0 0 c 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 0 0 0 g 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 0 0 0 t 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv5_m22_shift2 (oligos_8nt_mkv5_m22oligos_8nt_mkv5_m22)				; oligos_8nt_mkv5_m22 (oligos_8nt_mkv5_m22oligos_8nt_mkv5_m22); m=0 (reference); ncol1=12; shift=2; ncol=14; --cwAACCACAArm ; Alignment reference a 0 0 54 78 204 192 9 12 198 7 207 184 63 55 c 0 0 58 37 1 12 203 199 8 200 5 14 54 76 g 0 0 54 45 9 6 3 1 8 6 2 14 61 45 t 0 0 53 59 5 9 4 7 5 6 5 7 41 43
MA0684.2_shift2 (RUNX3)				; oligos_8nt_mkv5_m22 versus MA0684.2 (RUNX3); m=1/5; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.875122; --awAACCTCAawh ; cor=; Ncor= a 0 0 7768.0 9558.0 19136.0 26243.0 427.0 495.0 6357.0 611.0 26121.0 16137.0 8778.0 6879.0 c 0 0 6083.0 5007.0 2662.0 315.0 26293.0 26208.0 419.0 26015.0 414.0 3077.0 5994.0 6900.0 g 0 0 6685.0 3547.0 3500.0 431.0 198.0 385.0 1911.0 390.0 338.0 4696.0 5642.0 6372.0 t 0 0 6841.0 9265.0 2079.0 388.0 459.0 289.0 18690.0 361.0 504.0 3467.0 6963.0 7226.0
MA0002.2_rc_shift3 (RUNX1_rc)				; oligos_8nt_mkv5_m22 versus MA0002.2_rc (RUNX1_rc); m=2/5; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.837864; ---waaCCACAram ; cor=; Ncor= a 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 c 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 g 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 t 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0
MA0511.2_shift3 (RUNX2)				; oligos_8nt_mkv5_m22 versus MA0511.2 (RUNX2); m=3/5; ncol2=9; w=9; offset=1; strand=D; shift=3; score=0.664179; ---wAACCRCAa-- ; cor=; Ncor= a 0 0 0 3872.0 6621.0 6621.0 0.0 0.0 1914.0 0.0 6621.0 4202.0 0 0 c 0 0 0 1092.0 556.0 325.0 6621.0 6621.0 36.0 6621.0 476.0 677.0 0 0 g 0 0 0 326.0 1215.0 0.0 0.0 0.0 4707.0 0.0 458.0 1134.0 0 0 t 0 0 0 2748.0 582.0 0.0 0.0 0.0 120.0 0.0 191.0 607.0 0 0
MA0479.1_shift0 (FOXH1)				; oligos_8nt_mkv5_m22 versus MA0479.1 (FOXH1); m=4/5; ncol2=11; w=9; offset=-2; strand=D; shift=0; score=0.469349; ybsAATMCACA--- ; cor=; Ncor= a 939.0 1578.0 973.0 8211.0 7547.0 0.0 2374.0 1414.0 8211.0 0.0 7138.0 0 0 0 c 2840.0 2333.0 3261.0 0.0 0.0 0.0 5773.0 6797.0 0.0 8211.0 0.0 0 0 0 g 1490.0 2137.0 3156.0 0.0 229.0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0 t 2942.0 2163.0 821.0 0.0 435.0 8211.0 64.0 0.0 0.0 0.0 1073.0 0 0 0
MA0130.1_shift4 (ZNF354C)				; oligos_8nt_mkv5_m22 versus MA0130.1 (ZNF354C); m=5/5; ncol2=6; w=6; offset=2; strand=D; shift=4; score=0.401355; ----mTCCAC---- ; cor=; Ncor= a 0 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 c 0 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 g 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 t 0 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m22_shift0 (oligos_7nt_mkv4_m22oligos_7nt_mkv4_m22)				; oligos_7nt_mkv4_m22 (oligos_7nt_mkv4_m22oligos_7nt_mkv4_m22); m=0 (reference); ncol1=11; shift=0; ncol=18; ccACATTCCwk------- ; Alignment reference a 60 50 262 6 267 1 7 8 3 82 49 0 0 0 0 0 0 0 c 82 118 2 235 1 1 3 256 253 49 66 0 0 0 0 0 0 0 g 63 54 4 10 2 1 1 0 11 41 86 0 0 0 0 0 0 0 t 65 48 2 19 0 267 259 6 3 98 69 0 0 0 0 0 0 0
MA0809.2_shift0 (TEAD4)				; oligos_7nt_mkv4_m22 versus MA0809.2 (TEAD4); m=1/5; ncol2=12; w=11; offset=0; strand=D; shift=0; score=0.874421; ycACATTCCAgs------ ; cor=; Ncor= a 18932.0 17306.0 61263.0 7543.0 74797.0 965.0 2673.0 1366.0 1314.0 61802.0 16617.0 19272.0 0 0 0 0 0 0 c 22343.0 26577.0 2414.0 66205.0 1218.0 1129.0 1176.0 72555.0 75066.0 3874.0 13864.0 20301.0 0 0 0 0 0 0 g 15111.0 15427.0 11265.0 3295.0 569.0 1025.0 2100.0 1580.0 212.0 1191.0 32220.0 22630.0 0 0 0 0 0 0 t 21700.0 18776.0 3144.0 1043.0 1502.0 74967.0 72137.0 2585.0 1494.0 11219.0 15385.0 15883.0 0 0 0 0 0 0
MA1121.1_shift0 (TEAD2)				; oligos_7nt_mkv4_m22 versus MA1121.1 (TEAD2); m=2/5; ncol2=13; w=11; offset=0; strand=D; shift=0; score=0.835957; hcACATTCCwgsc----- ; cor=; Ncor= a 137.0 88.0 441.0 39.0 517.0 2.0 15.0 8.0 8.0 263.0 112.0 111.0 109.0 0 0 0 0 0 c 145.0 238.0 17.0 478.0 5.0 10.0 8.0 500.0 513.0 60.0 111.0 172.0 221.0 0 0 0 0 0 g 112.0 81.0 70.0 14.0 11.0 6.0 9.0 10.0 3.0 56.0 207.0 147.0 117.0 0 0 0 0 0 t 148.0 135.0 14.0 11.0 9.0 524.0 510.0 24.0 18.0 163.0 112.0 112.0 95.0 0 0 0 0 0
MA0090.3_shift0 (TEAD1)				; oligos_7nt_mkv4_m22 versus MA0090.3 (TEAD1); m=3/5; ncol2=13; w=11; offset=0; strand=D; shift=0; score=0.792394; hyACATTCCAGsm----- ; cor=; Ncor= a 17689.0 16651.0 58030.0 6096.0 68106.0 535.0 4976.0 1348.0 702.0 57190.0 9124.0 13252.0 19194.0 0 0 0 0 0 c 19272.0 22059.0 1248.0 61276.0 646.0 700.0 622.0 66953.0 67635.0 1729.0 6215.0 20002.0 21358.0 0 0 0 0 0 g 14429.0 12053.0 9179.0 1923.0 946.0 646.0 1210.0 765.0 374.0 2051.0 47856.0 26525.0 16344.0 0 0 0 0 0 t 19008.0 19635.0 1941.0 1103.0 700.0 68517.0 63590.0 1332.0 1687.0 9428.0 7203.0 10619.0 13502.0 0 0 0 0 0
MA0808.1_shift2 (TEAD3)				; oligos_7nt_mkv4_m22 versus MA0808.1 (TEAD3); m=4/5; ncol2=8; w=8; offset=2; strand=D; shift=2; score=0.688668; --rCATTCCw-------- ; cor=; Ncor= a 0 0 12530.0 2524.0 21444.0 0.0 4566.0 0.0 0.0 21444.0 0 0 0 0 0 0 0 0 c 0 0 66.0 18920.0 0.0 0.0 23.0 21444.0 21444.0 1039.0 0 0 0 0 0 0 0 0 g 0 0 8913.0 441.0 0.0 0.0 969.0 0.0 0.0 8654.0 0 0 0 0 0 0 0 0 t 0 0 1109.0 0.0 0.0 21444.0 16878.0 0.0 4.0 13663.0 0 0 0 0 0 0 0 0
MA1600.1_shift0 (ZNF684)				; oligos_7nt_mkv4_m22 versus MA1600.1 (ZNF684); m=5/5; ncol2=18; w=11; offset=0; strand=D; shift=0; score=0.446219; ryACAGTCCACCCCTTkr ; cor=; Ncor= a 524.0 82.0 1238.0 9.0 1184.0 60.0 9.0 13.0 40.0 1012.0 3.0 44.0 7.0 0.0 249.0 56.0 216.0 606.0 c 168.0 403.0 24.0 1253.0 11.0 216.0 14.0 1236.0 1221.0 9.0 1226.0 1253.0 1229.0 1263.0 129.0 59.0 168.0 201.0 g 362.0 314.0 68.0 9.0 110.0 1135.0 59.0 25.0 2.0 57.0 63.0 10.0 7.0 0.0 18.0 14.0 514.0 326.0 t 206.0 721.0 19.0 19.0 131.0 74.0 1259.0 10.0 67.0 220.0 61.0 6.0 92.0 3.0 1107.0 1224.0 619.0 127.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m15_shift2 (oligos_7nt_mkv4_m15oligos_7nt_mkv4_m15)				; oligos_7nt_mkv4_m15 (oligos_7nt_mkv4_m15oligos_7nt_mkv4_m15); m=0 (reference); ncol1=12; shift=2; ncol=14; --vwAACCACAgcs ; Alignment reference a 0 0 82 103 292 290 5 12 281 7 286 49 71 64 c 0 0 77 71 0 4 290 276 3 281 3 36 96 95 g 0 0 92 46 3 2 2 10 13 8 9 198 74 76 t 0 0 49 80 5 4 3 2 3 4 2 17 59 65
MA0002.2_rc_shift3 (RUNX1_rc)				; oligos_7nt_mkv4_m15 versus MA0002.2_rc (RUNX1_rc); m=1/5; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.873829; ---waaCCACAram ; cor=; Ncor= a 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 c 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 g 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 t 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0
MA0684.2_shift2 (RUNX3)				; oligos_7nt_mkv4_m15 versus MA0684.2 (RUNX3); m=2/5; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.831717; --awAACCTCAawh ; cor=; Ncor= a 0 0 7768.0 9558.0 19136.0 26243.0 427.0 495.0 6357.0 611.0 26121.0 16137.0 8778.0 6879.0 c 0 0 6083.0 5007.0 2662.0 315.0 26293.0 26208.0 419.0 26015.0 414.0 3077.0 5994.0 6900.0 g 0 0 6685.0 3547.0 3500.0 431.0 198.0 385.0 1911.0 390.0 338.0 4696.0 5642.0 6372.0 t 0 0 6841.0 9265.0 2079.0 388.0 459.0 289.0 18690.0 361.0 504.0 3467.0 6963.0 7226.0
MA0483.1_shift3 (Gfi1b)				; oligos_7nt_mkv4_m15 versus MA0483.1 (Gfi1b); m=3/5; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.688751; ---aAATCwCwGCw ; cor=; Ncor= a 0 0 0 1124.0 1761.0 1759.0 0.0 0.0 1033.0 61.0 1116.0 57.0 142.0 740.0 c 0 0 0 438.0 0.0 0.0 338.0 1761.0 21.0 1312.0 0.0 1.0 1328.0 433.0 g 0 0 0 104.0 0.0 2.0 28.0 0.0 0.0 388.0 1.0 1676.0 76.0 130.0 t 0 0 0 95.0 0.0 0.0 1395.0 0.0 707.0 0.0 644.0 27.0 215.0 458.0
MA0511.2_shift3 (RUNX2)				; oligos_7nt_mkv4_m15 versus MA0511.2 (RUNX2); m=4/5; ncol2=9; w=9; offset=1; strand=D; shift=3; score=0.630756; ---wAACCRCAa-- ; cor=; Ncor= a 0 0 0 3872.0 6621.0 6621.0 0.0 0.0 1914.0 0.0 6621.0 4202.0 0 0 c 0 0 0 1092.0 556.0 325.0 6621.0 6621.0 36.0 6621.0 476.0 677.0 0 0 g 0 0 0 326.0 1215.0 0.0 0.0 0.0 4707.0 0.0 458.0 1134.0 0 0 t 0 0 0 2748.0 582.0 0.0 0.0 0.0 120.0 0.0 191.0 607.0 0 0
MA0479.1_shift0 (FOXH1)				; oligos_7nt_mkv4_m15 versus MA0479.1 (FOXH1); m=5/5; ncol2=11; w=9; offset=-2; strand=D; shift=0; score=0.458935; ybsAATMCACA--- ; cor=; Ncor= a 939.0 1578.0 973.0 8211.0 7547.0 0.0 2374.0 1414.0 8211.0 0.0 7138.0 0 0 0 c 2840.0 2333.0 3261.0 0.0 0.0 0.0 5773.0 6797.0 0.0 8211.0 0.0 0 0 0 g 1490.0 2137.0 3156.0 0.0 229.0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0 t 2942.0 2163.0 821.0 0.0 435.0 8211.0 64.0 0.0 0.0 0.0 1073.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m26_shift3 (dyads_m26dyads_m26)				; dyads_m26 (dyads_m26dyads_m26); m=0 (reference); ncol1=10; shift=3; ncol=16; ---scCACACChs--- ; Alignment reference a 0 0 0 107 153 0 672 0 672 0 0 174 138 0 0 0 c 0 0 0 238 261 672 0 672 0 672 672 261 186 0 0 0 g 0 0 0 198 124 0 0 0 0 0 0 43 227 0 0 0 t 0 0 0 129 134 0 0 0 0 0 0 194 121 0 0 0
MA1566.1_rc_shift3 (TBX3_rc)				; dyads_m26 versus MA1566.1_rc (TBX3_rc); m=1/34; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.869181; ---ttsACACcty--- ; cor=; Ncor= a 0 0 0 578.0 484.0 1112.0 2544.0 0.0 2544.0 0.0 302.0 760.0 497.0 0 0 0 c 0 0 0 620.0 947.0 2544.0 155.0 2544.0 0.0 2544.0 2544.0 1207.0 1003.0 0 0 0 g 0 0 0 586.0 410.0 1471.0 634.0 0.0 735.0 45.0 862.0 481.0 399.0 0 0 0 t 0 0 0 760.0 2544.0 170.0 115.0 0.0 16.0 6.0 427.0 2544.0 644.0 0 0 0
MA1567.1_rc_shift3 (TBX6_rc)				; dyads_m26 versus MA1567.1_rc (TBX6_rc); m=2/34; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.834262; ---tTmACACcty--- ; cor=; Ncor= a 0 0 0 2330.0 713.0 5964.0 11087.0 12.0 11087.0 0.0 1058.0 2157.0 2456.0 0 0 0 c 0 0 0 2141.0 2251.0 11087.0 320.0 11087.0 0.0 11087.0 11087.0 3347.0 4003.0 0 0 0 g 0 0 0 2066.0 652.0 4876.0 3053.0 0.0 1002.0 63.0 2913.0 1173.0 1630.0 0 0 0 t 0 0 0 4550.0 11087.0 1430.0 552.0 14.0 44.0 58.0 1882.0 11087.0 2998.0 0 0 0
MA1511.1_shift3 (KLF10)				; dyads_m26 versus MA1511.1 (KLF10); m=3/34; ncol2=11; w=10; offset=0; strand=D; shift=3; score=0.806462; ---gmCACrCCCmy-- ; cor=; Ncor= a 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 c 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 g 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 t 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0
MA0690.1_rc_shift3 (TBX21_rc)				; dyads_m26 versus MA0690.1_rc (TBX21_rc); m=4/34; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.791893; ---TTCACACCTt--- ; cor=; Ncor= a 0 0 0 1287.0 0.0 364.0 4395.0 2.0 4395.0 33.0 398.0 146.0 872.0 0 0 0 c 0 0 0 317.0 38.0 4395.0 34.0 4395.0 16.0 4395.0 4395.0 359.0 937.0 0 0 0 g 0 0 0 441.0 0.0 126.0 331.0 0.0 180.0 17.0 239.0 30.0 263.0 0 0 0 t 0 0 0 4395.0 4395.0 80.0 185.0 1.0 6.0 2.0 612.0 4395.0 2322.0 0 0 0
MA0493.1_shift2 (Klf1)				; dyads_m26 versus MA0493.1 (Klf1); m=5/34; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.776907; --rrCCACACCCw--- ; cor=; Ncor= a 0 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 c 0 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 g 0 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0
MA0689.1_rc_shift2 (TBX20_rc)				; dyads_m26 versus MA0689.1_rc (TBX20_rc); m=6/34; ncol2=11; w=10; offset=-1; strand=R; shift=2; score=0.725561; --yTTCACACCTw--- ; cor=; Ncor= a 0 0 59.0 170.0 10.0 82.0 572.0 4.0 572.0 40.0 26.0 24.0 250.0 0 0 0 c 0 0 300.0 53.0 6.0 572.0 11.0 572.0 10.0 572.0 572.0 54.0 121.0 0 0 0 g 0 0 60.0 16.0 1.0 10.0 1.0 1.0 0.0 0.0 34.0 23.0 4.0 0 0 0 t 0 0 154.0 572.0 572.0 48.0 8.0 0.0 0.0 0.0 50.0 572.0 197.0 0 0 0
MA1517.1_shift2 (KLF6)				; dyads_m26 versus MA1517.1 (KLF6); m=7/34; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.718161; --srcCACRCCCm--- ; cor=; Ncor= a 0 0 443.0 1035.0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 c 0 0 624.0 490.0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 g 0 0 626.0 1157.0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 t 0 0 499.0 136.0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0
MA1512.1_shift3 (KLF11)				; dyads_m26 versus MA1512.1 (KLF11); m=8/34; ncol2=11; w=10; offset=0; strand=D; shift=3; score=0.717199; ---gcCACGCCCmC-- ; cor=; Ncor= a 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 c 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 g 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 t 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0
MA1515.1_shift2 (KLF2)				; dyads_m26 versus MA1515.1 (KLF2); m=9/34; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.714686; --srCCmCrCCCw--- ; cor=; Ncor= a 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0
MA0688.1_rc_shift2 (TBX2_rc)				; dyads_m26 versus MA0688.1_rc (TBX2_rc); m=10/34; ncol2=11; w=10; offset=-1; strand=R; shift=2; score=0.712652; --ttTcACACCTw--- ; cor=; Ncor= a 0 0 667.0 656.0 120.0 1409.0 3181.0 12.0 3181.0 14.0 353.0 442.0 804.0 0 0 0 c 0 0 590.0 527.0 125.0 3181.0 27.0 3181.0 21.0 3181.0 3181.0 716.0 717.0 0 0 0 g 0 0 446.0 491.0 26.0 1289.0 392.0 0.0 329.0 36.0 519.0 59.0 402.0 0 0 0 t 0 0 1477.0 2525.0 3181.0 310.0 307.0 26.0 0.0 9.0 602.0 3181.0 1258.0 0 0 0
MA0599.1_shift3 (KLF5)				; dyads_m26 versus MA0599.1 (KLF5); m=11/34; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.70358; ---gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0
MA0741.1_shift3 (KLF16)				; dyads_m26 versus MA0741.1 (KLF16); m=12/34; ncol2=11; w=10; offset=0; strand=D; shift=3; score=0.692816; ---gmCMCgCCCMC-- ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0
MA0807.1_rc_shift4 (TBX5_rc)				; dyads_m26 versus MA0807.1_rc (TBX5_rc); m=13/34; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.691028; ----TmACACCT---- ; cor=; Ncor= a 0 0 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 c 0 0 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 g 0 0 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 t 0 0 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0
MA0801.1_rc_shift4 (MGA_rc)				; dyads_m26 versus MA0801.1_rc (MGA_rc); m=14/34; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.689546; ----TCACACCT---- ; cor=; Ncor= a 0 0 0 0 274.0 6465.0 30489.0 11.0 30489.0 104.0 1929.0 4160.0 0 0 0 0 c 0 0 0 0 920.0 30489.0 381.0 30489.0 96.0 30489.0 30489.0 8873.0 0 0 0 0 g 0 0 0 0 110.0 1753.0 3089.0 1.0 3534.0 509.0 3737.0 1151.0 0 0 0 0 t 0 0 0 0 30489.0 689.0 1042.0 14.0 12.0 16.0 4310.0 30489.0 0 0 0 0
MA0803.1_rc_shift4 (TBX15_rc)				; dyads_m26 versus MA0803.1_rc (TBX15_rc); m=15/34; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.686823; ----TCACACCT---- ; cor=; Ncor= a 0 0 0 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 0 0 0 c 0 0 0 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 0 0 0 g 0 0 0 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 0 0 0 t 0 0 0 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0 0 0 0
MA0805.1_rc_shift4 (TBX1_rc)				; dyads_m26 versus MA0805.1_rc (TBX1_rc); m=16/34; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.679117; ----TCACACCT---- ; cor=; Ncor= a 0 0 0 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 0 c 0 0 0 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 0 g 0 0 0 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 0 t 0 0 0 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0 0
MA1565.1_rc_shift2 (TBX18_rc)				; dyads_m26 versus MA1565.1_rc (TBX18_rc); m=17/34; ncol2=12; w=10; offset=-1; strand=R; shift=2; score=0.672011; --ytTCACACCTyy-- ; cor=; Ncor= a 0 0 90.0 95.0 34.0 32.0 778.0 2.0 778.0 0.0 47.0 59.0 148.0 160.0 0 0 c 0 0 246.0 265.0 5.0 778.0 109.0 778.0 0.0 778.0 778.0 159.0 435.0 316.0 0 0 g 0 0 137.0 62.0 1.0 161.0 98.0 6.0 80.0 0.0 57.0 62.0 103.0 86.0 0 0 t 0 0 305.0 778.0 778.0 52.0 100.0 21.0 7.0 14.0 73.0 778.0 343.0 216.0 0 0
MA0806.1_rc_shift4 (TBX4_rc)				; dyads_m26 versus MA0806.1_rc (TBX4_rc); m=18/34; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.665595; ----TcACACCT---- ; cor=; Ncor= a 0 0 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 c 0 0 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 g 0 0 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 t 0 0 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0
MA0802.1_rc_shift2 (TBR1_rc)				; dyads_m26 versus MA0802.1_rc (TBR1_rc); m=19/34; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.641773; --tTTCACACCT---- ; cor=; Ncor= a 0 0 5846.0 4576.0 205.0 7001.0 34509.0 4.0 34509.0 213.0 4480.0 1433.0 0 0 0 0 c 0 0 4537.0 1488.0 584.0 34509.0 157.0 34509.0 88.0 34509.0 34509.0 3329.0 0 0 0 0 g 0 0 5619.0 2575.0 90.0 2551.0 4742.0 6.0 1759.0 254.0 3255.0 359.0 0 0 0 0 t 0 0 18507.0 25869.0 34509.0 1175.0 2386.0 0.0 39.0 70.0 6880.0 34509.0 0 0 0 0
MA0039.4_shift2 (KLF4)				; dyads_m26 versus MA0039.4 (KLF4); m=20/34; ncol2=12; w=10; offset=-1; strand=D; shift=2; score=0.618148; --ssCCCCACCChs-- ; cor=; Ncor= a 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0
MA0747.1_shift3 (SP8)				; dyads_m26 versus MA0747.1 (SP8); m=21/34; ncol2=12; w=10; offset=0; strand=D; shift=3; score=0.617648; ---rmCACgCCCmCy- ; cor=; Ncor= a 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 c 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 g 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 t 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0
MA0800.1_rc_shift0 (EOMES_rc)				; dyads_m26 versus MA0800.1_rc (EOMES_rc); m=22/34; ncol2=13; w=10; offset=-3; strand=R; shift=0; score=0.613024; dwttTCACACCTt--- ; cor=; Ncor= a 2800.0 4183.0 3781.0 3351.0 24.0 980.0 9832.0 3.0 9832.0 94.0 1305.0 653.0 2122.0 0 0 0 c 1954.0 1966.0 2941.0 1022.0 99.0 9832.0 98.0 9832.0 50.0 9832.0 9832.0 1259.0 2274.0 0 0 0 g 2577.0 1960.0 4337.0 1956.0 28.0 550.0 1540.0 8.0 600.0 92.0 1004.0 158.0 911.0 0 0 0 t 2501.0 5649.0 9832.0 9832.0 9832.0 210.0 495.0 9.0 19.0 23.0 1775.0 9832.0 4526.0 0 0 0
MA1564.1_shift3 (SP9)				; dyads_m26 versus MA1564.1 (SP9); m=23/34; ncol2=12; w=10; offset=0; strand=D; shift=3; score=0.601142; ---rcCmCGCCCmcy- ; cor=; Ncor= a 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 c 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 g 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 t 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0
MA0746.2_shift2 (SP3)				; dyads_m26 versus MA0746.2 (SP3); m=24/34; ncol2=13; w=10; offset=-1; strand=D; shift=2; score=0.551408; --srCCACGCCCmCy- ; cor=; Ncor= a 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0
MA1621.1_shift3 (Rbpjl)				; dyads_m26 versus MA1621.1 (Rbpjl); m=25/34; ncol2=14; w=10; offset=0; strand=D; shift=3; score=0.544913; ---svmaCACCTGtsy ; cor=; Ncor= a 0 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 c 0 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 g 0 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 t 0 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0
MA1107.2_shift1 (KLF9)				; dyads_m26 versus MA1107.2 (KLF9); m=26/34; ncol2=16; w=10; offset=-2; strand=D; shift=1; score=0.536519; -crgCCACACCCAChy ; cor=; Ncor= a 0 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 c 0 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 g 0 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 t 0 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0
MA1620.1_shift4 (Ptf1a(var.3))				; dyads_m26 versus MA1620.1 (Ptf1a(var.3)); m=27/34; ncol2=12; w=9; offset=1; strand=D; shift=4; score=0.534089; ----rmaCACCTGtky ; cor=; Ncor= a 0 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 c 0 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 g 0 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 t 0 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0
MA0740.1_shift2 (KLF14)				; dyads_m26 versus MA0740.1 (KLF14); m=28/34; ncol2=14; w=10; offset=-1; strand=D; shift=2; score=0.500055; --krcCACGCCCmYyt ; cor=; Ncor= a 0 0 430.0 1205.0 526.0 0.0 1708.0 2.0 69.0 0.0 0.0 0.0 716.0 32.0 280.0 649.0 c 0 0 215.0 73.0 1360.0 1599.0 136.0 1596.0 36.0 1602.0 1604.0 1609.0 961.0 1463.0 594.0 741.0 g 0 0 966.0 2280.0 96.0 10.0 58.0 0.0 2939.0 3.0 3.0 4.0 1.0 15.0 89.0 314.0 t 0 0 693.0 71.0 404.0 248.0 5.0 2.0 31.0 0.0 6.0 65.0 31.0 559.0 1041.0 1670.0
MA0742.1_shift2 (Klf12)				; dyads_m26 versus MA0742.1 (Klf12); m=29/34; ncol2=15; w=10; offset=-1; strand=D; shift=2; score=0.479042; --GrCCACGCCCwtht ; cor=; Ncor= a 0 0 167.0 553.0 19.0 5.0 853.0 9.0 215.0 0.0 0.0 0.0 410.0 238.0 308.0 238.0 c 0 0 35.0 11.0 668.0 670.0 27.0 675.0 1.0 687.0 706.0 715.0 120.0 219.0 239.0 186.0 g 0 0 1158.0 531.0 8.0 12.0 2.0 0.0 1348.0 0.0 9.0 0.0 0.0 99.0 84.0 117.0 t 0 0 225.0 0.0 9.0 3.0 0.0 4.0 16.0 4.0 13.0 13.0 483.0 403.0 290.0 429.0
MA1558.1_rc_shift5 (SNAI1_rc)				; dyads_m26 versus MA1558.1_rc (SNAI1_rc); m=30/34; ncol2=10; w=8; offset=2; strand=R; shift=5; score=0.478194; -----yrCACCTGyh- ; cor=; Ncor= a 0 0 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 c 0 0 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 g 0 0 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 t 0 0 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0
MA1155.1_shift3 (ZSCAN4)				; dyads_m26 versus MA1155.1 (ZSCAN4); m=31/34; ncol2=15; w=10; offset=0; strand=D; shift=3; score=0.471533; ---tGCACACmCTGaA ; cor=; Ncor= a 0 0 0 257.0 290.0 0.0 1292.0 0.0 1281.0 3.0 772.0 7.0 8.0 3.0 1118.0 1225.0 c 0 0 0 383.0 2.0 1676.0 0.0 1665.0 0.0 1702.0 374.0 1684.0 11.0 50.0 107.0 279.0 g 0 0 0 112.0 1737.0 1.0 0.0 0.0 2.0 0.0 320.0 0.0 75.0 1873.0 230.0 0.0 t 0 0 0 1373.0 0.0 0.0 2.0 0.0 2.0 73.0 8.0 2.0 1699.0 218.0 362.0 6.0
MA0103.3_shift5 (ZEB1)				; dyads_m26 versus MA0103.3 (ZEB1); m=32/34; ncol2=11; w=8; offset=2; strand=D; shift=5; score=0.442718; -----ssCACCTGsss ; cor=; Ncor= a 0 0 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 c 0 0 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 g 0 0 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 t 0 0 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0
MA0522.3_shift5 (TCF3)				; dyads_m26 versus MA0522.3 (TCF3); m=33/34; ncol2=11; w=8; offset=2; strand=D; shift=5; score=0.438108; -----svCACCTGCss ; cor=; Ncor= a 0 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 c 0 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 g 0 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 t 0 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0
MA1648.1_shift5 (TCF12(var.2))				; dyads_m26 versus MA1648.1 (TCF12(var.2)); m=34/34; ncol2=11; w=8; offset=2; strand=D; shift=5; score=0.432873; -----ssCACCTGCys ; cor=; Ncor= a 0 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 c 0 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 g 0 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 t 0 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv5_m39_shift3 (oligos_8nt_mkv5_m39oligos_8nt_mkv5_m39)				; oligos_8nt_mkv5_m39 (oligos_8nt_mkv5_m39oligos_8nt_mkv5_m39); m=0 (reference); ncol1=12; shift=3; ncol=18; ---syCTCCACCCss--- ; Alignment reference a 0 0 0 46 23 3 3 1 1 180 1 3 2 38 35 0 0 0 c 0 0 0 63 70 184 14 197 195 2 196 186 191 62 64 0 0 0 g 0 0 0 53 49 8 13 2 3 16 0 5 5 65 66 0 0 0 t 0 0 0 38 58 5 170 0 1 2 3 6 2 35 35 0 0 0
MA0039.4_shift3 (KLF4)				; oligos_8nt_mkv5_m39 versus MA0039.4 (KLF4); m=1/7; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.85778; ---ssCCCCACCChs--- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0 0
MA0528.2_rc_shift4 (ZNF263_rc)				; oligos_8nt_mkv5_m39 versus MA0528.2_rc (ZNF263_rc); m=2/7; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.660013; ----csTCCTCCCcsc-- ; cor=; Ncor= a 0 0 0 0 11103.0 6566.0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 8247.0 12535.0 9733.0 0 0 c 0 0 0 0 25115.0 24825.0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 28912.0 17883.0 20283.0 0 0 g 0 0 0 0 11689.0 15413.0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 6183.0 14909.0 13040.0 0 0 t 0 0 0 0 8436.0 9539.0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 13001.0 11016.0 13287.0 0 0
MA0599.1_shift4 (KLF5)				; oligos_8nt_mkv5_m39 versus MA0599.1 (KLF5); m=3/7; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.65579; ----gCCMCrCCCh---- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0
MA1600.1_shift0 (ZNF684)				; oligos_8nt_mkv5_m39 versus MA1600.1 (ZNF684); m=4/7; ncol2=18; w=12; offset=-3; strand=D; shift=0; score=0.469082; ryACAGTCCACCCCTTkr ; cor=; Ncor= a 524.0 82.0 1238.0 9.0 1184.0 60.0 9.0 13.0 40.0 1012.0 3.0 44.0 7.0 0.0 249.0 56.0 216.0 606.0 c 168.0 403.0 24.0 1253.0 11.0 216.0 14.0 1236.0 1221.0 9.0 1226.0 1253.0 1229.0 1263.0 129.0 59.0 168.0 201.0 g 362.0 314.0 68.0 9.0 110.0 1135.0 59.0 25.0 2.0 57.0 63.0 10.0 7.0 0.0 18.0 14.0 514.0 326.0 t 206.0 721.0 19.0 19.0 131.0 74.0 1259.0 10.0 67.0 220.0 61.0 6.0 92.0 3.0 1107.0 1224.0 619.0 127.0
MA0130.1_shift5 (ZNF354C)				; oligos_8nt_mkv5_m39 versus MA0130.1 (ZNF354C); m=5/7; ncol2=6; w=6; offset=2; strand=D; shift=5; score= 0.4597; -----mTCCAC------- ; cor=; Ncor= a 0 0 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 c 0 0 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 g 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 t 0 0 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0
MA1578.1_shift7 (VEZF1)				; oligos_8nt_mkv5_m39 versus MA1578.1 (VEZF1); m=6/7; ncol2=10; w=8; offset=4; strand=D; shift=7; score=0.427213; -------CCCCCCmytw- ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0
MA1653.1_shift0 (ZNF148)				; oligos_8nt_mkv5_m39 versus MA1653.1 (ZNF148); m=7/7; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.420962; ysCCCCTCCCcc------ ; cor=; Ncor= a 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 0 0 0 0 c 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 0 0 0 0 g 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 0 0 0 0 t 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m19_shift4 (oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19)				; oligos_7nt_mkv4_m19 (oligos_7nt_mkv4_m19oligos_7nt_mkv4_m19); m=0 (reference); ncol1=12; shift=4; ncol=16; ----krACAGTTGTyh ; Alignment reference a 0 0 0 0 45 84 221 3 220 2 7 5 8 5 40 64 c 0 0 0 0 56 49 6 227 2 12 12 3 7 8 73 72 g 0 0 0 0 71 64 4 3 3 200 39 3 212 12 37 37 t 0 0 0 0 61 36 2 0 8 19 175 222 6 208 83 60
MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)				; oligos_7nt_mkv4_m19 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=1/35; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.855861; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0
MA1641.1_shift4 (MYF5)				; oligos_7nt_mkv4_m19 versus MA1641.1 (MYF5); m=2/35; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.826657; ----gvaCAGCTGtbc ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0
MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)				; oligos_7nt_mkv4_m19 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=3/35; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.811381; ----rmaCAGCTGtky ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0
MA0667.1_rc_shift5 (MYF6_rc)				; oligos_7nt_mkv4_m19 versus MA0667.1_rc (MYF6_rc); m=4/35; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.75609; -----RACAGyTGTT- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 c 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 g 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 t 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0
MA1618.1_shift4 (Ptf1a)				; oligos_7nt_mkv4_m19 versus MA1618.1 (Ptf1a); m=5/35; ncol2=13; w=12; offset=0; strand=D; shift=4; score=0.754425; ----dmaCAGATGttk ; cor=; Ncor= a 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 c 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 g 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 t 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0
MA0783.1_shift4 (PKNOX2)				; oligos_7nt_mkv4_m19 versus MA0783.1 (PKNOX2); m=6/35; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.746063; ----TGACAGsTGTCA ; cor=; Ncor= a 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 c 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 g 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 t 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0
MA0797.1_shift4 (TGIF2)				; oligos_7nt_mkv4_m19 versus MA0797.1 (TGIF2); m=7/35; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.735814; ----TGACAGsTGTCA ; cor=; Ncor= a 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 c 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 g 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 t 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0
MA0796.1_shift4 (TGIF1)				; oligos_7nt_mkv4_m19 versus MA0796.1 (TGIF1); m=8/35; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.731315; ----TGACAGCTGTCA ; cor=; Ncor= a 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 c 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 g 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 t 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0
MA1571.1_rc_shift4 (TGIF2LX_rc)				; oligos_7nt_mkv4_m19 versus MA1571.1_rc (TGIF2LX_rc); m=9/35; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.724582; ----TGACAgcTGTCA ; cor=; Ncor= a 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 c 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 g 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 t 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0
MA1621.1_rc_shift3 (Rbpjl_rc)				; oligos_7nt_mkv4_m19 versus MA1621.1_rc (Rbpjl_rc); m=10/35; ncol2=14; w=12; offset=-1; strand=R; shift=3; score=0.720777; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0
MA0499.2_rc_shift3 (MYOD1_rc)				; oligos_7nt_mkv4_m19 versus MA0499.2_rc (MYOD1_rc); m=11/35; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.718739; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0
MA1572.1_rc_shift4 (TGIF2LY_rc)				; oligos_7nt_mkv4_m19 versus MA1572.1_rc (TGIF2LY_rc); m=12/35; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.715456; ----TGACAgcTGTCA ; cor=; Ncor= a 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 c 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 g 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 t 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0
MA0745.2_rc_shift3 (SNAI2_rc)				; oligos_7nt_mkv4_m19 versus MA0745.2_rc (SNAI2_rc); m=13/35; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.70991; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0
MA0500.2_rc_shift4 (MYOG_rc)				; oligos_7nt_mkv4_m19 versus MA0500.2_rc (MYOG_rc); m=14/35; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.709012; ----sarCAGCTGyts ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0
MA0100.3_rc_shift5 (MYB_rc)				; oligos_7nt_mkv4_m19 versus MA0100.3_rc (MYB_rc); m=15/35; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.70242; -----kdCAGTTGvk- ; cor=; Ncor= a 0 0 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 c 0 0 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 g 0 0 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 t 0 0 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0
MA0665.1_rc_shift5 (MSC_rc)				; oligos_7nt_mkv4_m19 versus MA0665.1_rc (MSC_rc); m=16/35; ncol2=10; w=10; offset=1; strand=R; shift=5; score= 0.692; -----AACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0
MA0832.1_shift3 (Tcf21)				; oligos_7nt_mkv4_m19 versus MA0832.1 (Tcf21); m=17/35; ncol2=14; w=12; offset=-1; strand=D; shift=3; score=0.688641; ---ryAACAGCTGTTr ; cor=; Ncor= a 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 c 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 g 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 t 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0
MA0521.1_shift5 (Tcf12)				; oligos_7nt_mkv4_m19 versus MA0521.1 (Tcf12); m=18/35; ncol2=11; w=11; offset=1; strand=D; shift=5; score=0.687713; -----rRCAGCTGswg ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0
MA1467.1_shift5 (ATOH1(var.2))				; oligos_7nt_mkv4_m19 versus MA1467.1 (ATOH1(var.2)); m=19/35; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.683464; -----AACAGCTGTY- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0
MA0820.1_rc_shift5 (FIGLA_rc)				; oligos_7nt_mkv4_m19 versus MA0820.1_rc (FIGLA_rc); m=20/35; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.660035; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0
MA1485.1_rc_shift3 (FERD3L_rc)				; oligos_7nt_mkv4_m19 versus MA1485.1_rc (FERD3L_rc); m=21/35; ncol2=14; w=12; offset=-1; strand=R; shift=3; score=0.655784; ---GTrACAGCTGkyr ; cor=; Ncor= a 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 c 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 g 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 t 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0
MA1123.2_shift3 (TWIST1)				; oligos_7nt_mkv4_m19 versus MA1123.2 (TWIST1); m=22/35; ncol2=13; w=12; offset=-1; strand=D; shift=3; score=0.653851; ---awwCCAGATGtbt ; cor=; Ncor= a 0 0 0 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 6823.0 c 0 0 0 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 6561.0 g 0 0 0 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 6213.0 t 0 0 0 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0 7736.0
MA1472.1_shift5 (BHLHA15(var.2))				; oligos_7nt_mkv4_m19 versus MA1472.1 (BHLHA15(var.2)); m=23/35; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.652755; -----avCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0
MA0698.1_shift3 (ZBTB18)				; oligos_7nt_mkv4_m19 versus MA0698.1 (ZBTB18); m=24/35; ncol2=13; w=12; offset=-1; strand=D; shift=3; score=0.649414; ---hatCCAGATGTkb ; cor=; Ncor= a 0 0 0 3561.0 7064.0 1177.0 3618.0 21.0 13670.0 3.0 13670.0 14.0 3.0 48.0 210.0 1725.0 c 0 0 0 4188.0 753.0 1937.0 13670.0 13670.0 5.0 245.0 1048.0 15.0 1.0 314.0 177.0 4042.0 g 0 0 0 2499.0 2535.0 5212.0 1899.0 3.0 33.0 13670.0 278.0 94.0 13670.0 36.0 5530.0 3876.0 t 0 0 0 3423.0 3319.0 13670.0 60.0 8.0 206.0 6.0 297.0 13670.0 1.0 13670.0 8140.0 4027.0
MA0691.1_shift5 (TFAP4)				; oligos_7nt_mkv4_m19 versus MA0691.1 (TFAP4); m=25/35; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.620204; -----AwCAGCTGwT- ; cor=; Ncor= a 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 c 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 g 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 t 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0
MA1559.1_shift5 (SNAI3)				; oligos_7nt_mkv4_m19 versus MA1559.1 (SNAI3); m=26/35; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.615882; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0
MA0091.1_rc_shift5 (TAL1::TCF3_rc)				; oligos_7nt_mkv4_m19 versus MA0091.1_rc (TAL1::TCF3_rc); m=27/35; ncol2=12; w=11; offset=1; strand=R; shift=5; score=0.611326; -----AmCAKMTGkTc ; cor=; Ncor= a 0 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 c 0 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 g 0 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 t 0 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0
MA1570.1_shift5 (TFAP4(var.2))				; oligos_7nt_mkv4_m19 versus MA1570.1 (TFAP4(var.2)); m=28/35; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.598155; -----ahCAyrTGkt- ; cor=; Ncor= a 0 0 0 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 c 0 0 0 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 g 0 0 0 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 t 0 0 0 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0
MA0816.1_rc_shift5 (Ascl2_rc)				; oligos_7nt_mkv4_m19 versus MA0816.1_rc (Ascl2_rc); m=29/35; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.593372; -----rrCAGCTGyt- ; cor=; Ncor= a 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 c 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 g 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 t 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0
MA1558.1_shift5 (SNAI1)				; oligos_7nt_mkv4_m19 versus MA1558.1 (SNAI1); m=30/35; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.592466; -----drCAGGTGyr- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0
MA0743.2_shift0 (SCRT1)				; oligos_7nt_mkv4_m19 versus MA0743.2 (SCRT1); m=31/35; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.543924; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0
MA0744.2_shift0 (SCRT2)				; oligos_7nt_mkv4_m19 versus MA0744.2 (SCRT2); m=32/35; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.534522; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0
MA0807.1_shift8 (TBX5)				; oligos_7nt_mkv4_m19 versus MA0807.1 (TBX5); m=33/35; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.482617; --------AGGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0
MA0806.1_shift8 (TBX4)				; oligos_7nt_mkv4_m19 versus MA0806.1 (TBX4); m=34/35; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.48231; --------AGGTGTgA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0
MA0803.1_shift8 (TBX15)				; oligos_7nt_mkv4_m19 versus MA0803.1 (TBX15); m=35/35; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.473122; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10502.0 458.0 19.0 61.0 0.0 140.0 44.0 10502.0 c 0 0 0 0 0 0 0 0 74.0 101.0 7.0 175.0 8.0 435.0 454.0 71.0 g 0 0 0 0 0 0 0 0 664.0 10502.0 10502.0 245.0 10502.0 324.0 10502.0 306.0 t 0 0 0 0 0 0 0 0 112.0 103.0 0.0 10502.0 0.0 10502.0 937.0 96.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m46_shift4 (oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46)				; oligos_7nt_mkv4_m46 (oligos_7nt_mkv4_m46oligos_7nt_mkv4_m46); m=0 (reference); ncol1=12; shift=4; ncol=16; ----gvACAAGTGTky ; Alignment reference a 0 0 0 0 52 70 210 3 212 161 18 2 3 2 42 47 c 0 0 0 0 52 58 4 217 6 16 25 4 3 7 56 70 g 0 0 0 0 72 62 3 2 2 40 180 2 215 8 63 49 t 0 0 0 0 49 35 8 3 5 8 2 217 4 208 64 59
MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)				; oligos_7nt_mkv4_m46 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=1/27; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.854974; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0
MA1621.1_rc_shift3 (Rbpjl_rc)				; oligos_7nt_mkv4_m46 versus MA1621.1_rc (Rbpjl_rc); m=2/27; ncol2=14; w=12; offset=-1; strand=R; shift=3; score=0.723844; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0
MA1641.1_shift4 (MYF5)				; oligos_7nt_mkv4_m46 versus MA1641.1 (MYF5); m=3/27; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.717432; ----gvaCAGCTGtbc ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0
MA0745.2_rc_shift3 (SNAI2_rc)				; oligos_7nt_mkv4_m46 versus MA0745.2_rc (SNAI2_rc); m=4/27; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.715199; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0
MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)				; oligos_7nt_mkv4_m46 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=5/27; ncol2=12; w=12; offset=0; strand=R; shift=4; score=0.711246; ----rmaCAGCTGtky ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0
MA0783.1_shift4 (PKNOX2)				; oligos_7nt_mkv4_m46 versus MA0783.1 (PKNOX2); m=6/27; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.704948; ----TGACAGsTGTCA ; cor=; Ncor= a 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 c 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 g 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 t 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0
MA0499.2_rc_shift3 (MYOD1_rc)				; oligos_7nt_mkv4_m46 versus MA0499.2_rc (MYOD1_rc); m=7/27; ncol2=13; w=12; offset=-1; strand=R; shift=3; score=0.694341; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0
MA0819.1_shift5 (CLOCK)				; oligos_7nt_mkv4_m46 versus MA0819.1 (CLOCK); m=8/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.689041; -----aACACGTGty- ; cor=; Ncor= a 0 0 0 0 0 226.0 429.0 11.0 429.0 16.0 40.0 3.0 0.0 1.0 89.0 0 c 0 0 0 0 0 35.0 85.0 429.0 5.0 429.0 0.0 5.0 3.0 152.0 128.0 0 g 0 0 0 0 0 93.0 89.0 2.0 15.0 0.0 429.0 5.0 429.0 110.0 39.0 0 t 0 0 0 0 0 75.0 13.0 2.0 0.0 28.0 0.0 429.0 9.0 429.0 174.0 0
MA0667.1_shift5 (MYF6)				; oligos_7nt_mkv4_m46 versus MA0667.1 (MYF6); m=9/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.675947; -----AACArCTGTY- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 c 0 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 g 0 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 t 0 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0
MA0820.1_rc_shift5 (FIGLA_rc)				; oligos_7nt_mkv4_m46 versus MA0820.1_rc (FIGLA_rc); m=10/27; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.651472; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0
MA1618.1_shift4 (Ptf1a)				; oligos_7nt_mkv4_m46 versus MA1618.1 (Ptf1a); m=11/27; ncol2=13; w=12; offset=0; strand=D; shift=4; score=0.649962; ----dmaCAGATGttk ; cor=; Ncor= a 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 c 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 g 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 t 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0
MA1559.1_shift5 (SNAI3)				; oligos_7nt_mkv4_m46 versus MA1559.1 (SNAI3); m=12/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.624394; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0
MA1558.1_shift5 (SNAI1)				; oligos_7nt_mkv4_m46 versus MA1558.1 (SNAI1); m=13/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.622662; -----drCAGGTGyr- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0
MA0626.1_shift5 (Npas2)				; oligos_7nt_mkv4_m46 versus MA0626.1 (Npas2); m=14/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.617218; -----dsCACGTGtm- ; cor=; Ncor= a 0 0 0 0 0 273.0 154.0 0.0 999.0 81.0 81.0 0.0 81.0 74.0 297.0 0 c 0 0 0 0 0 177.0 377.0 999.0 0.0 918.0 0.0 0.0 0.0 172.0 299.0 0 g 0 0 0 0 0 293.0 420.0 0.0 0.0 0.0 918.0 0.0 918.0 188.0 202.0 0 t 0 0 0 0 0 257.0 48.0 0.0 0.0 0.0 0.0 999.0 0.0 566.0 202.0 0
MA1570.1_shift5 (TFAP4(var.2))				; oligos_7nt_mkv4_m46 versus MA1570.1 (TFAP4(var.2)); m=15/27; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.616954; -----ahCAyrTGkt- ; cor=; Ncor= a 0 0 0 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 c 0 0 0 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 g 0 0 0 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 t 0 0 0 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0
MA0665.1_rc_shift5 (MSC_rc)				; oligos_7nt_mkv4_m46 versus MA0665.1_rc (MSC_rc); m=16/27; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.605362; -----AACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0
MA1108.2_rc_shift5 (MXI1_rc)				; oligos_7nt_mkv4_m46 versus MA1108.2_rc (MXI1_rc); m=17/27; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.594767; -----gmCATGTGby- ; cor=; Ncor= a 0 0 0 0 0 5366.0 6658.0 175.0 21541.0 0.0 468.0 7.0 460.0 3945.0 5212.0 0 c 0 0 0 0 0 5394.0 7228.0 21232.0 0.0 1542.0 18.0 170.0 97.0 6078.0 6326.0 0 g 0 0 0 0 0 6343.0 5329.0 114.0 507.0 0.0 21552.0 1.0 21382.0 5841.0 4724.0 0 t 0 0 0 0 0 4945.0 2833.0 527.0 0.0 20506.0 10.0 21870.0 109.0 6184.0 5786.0 0
MA1467.1_rc_shift5 (ATOH1(var.2)_rc)				; oligos_7nt_mkv4_m46 versus MA1467.1_rc (ATOH1(var.2)_rc); m=18/27; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.58718; -----RACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 c 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 g 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 t 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0
MA0743.2_shift0 (SCRT1)				; oligos_7nt_mkv4_m46 versus MA0743.2 (SCRT1); m=19/27; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.552842; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0
MA0744.2_shift0 (SCRT2)				; oligos_7nt_mkv4_m46 versus MA0744.2 (SCRT2); m=20/27; ncol2=16; w=12; offset=-4; strand=D; shift=0; score=0.538975; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0
MA0806.1_shift8 (TBX4)				; oligos_7nt_mkv4_m46 versus MA0806.1 (TBX4); m=21/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.533639; --------AGGTGTgA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0
MA0807.1_shift8 (TBX5)				; oligos_7nt_mkv4_m46 versus MA0807.1 (TBX5); m=22/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.529008; --------AGGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0
MA0805.1_shift8 (TBX1)				; oligos_7nt_mkv4_m46 versus MA0805.1 (TBX1); m=23/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.506982; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 11931.0 1560.0 0.0 28.0 0.0 142.0 141.0 11931.0 c 0 0 0 0 0 0 0 0 113.0 711.0 0.0 214.0 5.0 613.0 720.0 33.0 g 0 0 0 0 0 0 0 0 1007.0 11931.0 11931.0 141.0 11931.0 109.0 11931.0 18.0 t 0 0 0 0 0 0 0 0 564.0 669.0 0.0 11931.0 0.0 11931.0 1039.0 0.0
MA0803.1_shift8 (TBX15)				; oligos_7nt_mkv4_m46 versus MA0803.1 (TBX15); m=24/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.496034; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10502.0 458.0 19.0 61.0 0.0 140.0 44.0 10502.0 c 0 0 0 0 0 0 0 0 74.0 101.0 7.0 175.0 8.0 435.0 454.0 71.0 g 0 0 0 0 0 0 0 0 664.0 10502.0 10502.0 245.0 10502.0 324.0 10502.0 306.0 t 0 0 0 0 0 0 0 0 112.0 103.0 0.0 10502.0 0.0 10502.0 937.0 96.0
MA0801.1_shift8 (MGA)				; oligos_7nt_mkv4_m46 versus MA0801.1 (MGA); m=25/27; ncol2=8; w=8; offset=4; strand=D; shift=8; score=0.495173; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 30489.0 4310.0 16.0 12.0 14.0 1042.0 689.0 30489.0 c 0 0 0 0 0 0 0 0 1151.0 3737.0 509.0 3534.0 1.0 3089.0 1753.0 110.0 g 0 0 0 0 0 0 0 0 8873.0 30489.0 30489.0 96.0 30489.0 381.0 30489.0 920.0 t 0 0 0 0 0 0 0 0 4160.0 1929.0 104.0 30489.0 11.0 30489.0 6465.0 274.0
MA0622.1_rc_shift6 (Mlxip_rc)				; oligos_7nt_mkv4_m46 versus MA0622.1_rc (Mlxip_rc); m=26/27; ncol2=8; w=8; offset=2; strand=R; shift=6; score=0.467273; ------mCACGTGv-- ; cor=; Ncor= a 0 0 0 0 0 0 499.0 0.0 999.0 0.0 0.0 0.0 0.0 263.0 0 0 c 0 0 0 0 0 0 250.0 999.0 0.0 999.0 0.0 0.0 0.0 421.0 0 0 g 0 0 0 0 0 0 63.0 0.0 0.0 0.0 999.0 0.0 999.0 263.0 0 0 t 0 0 0 0 0 0 188.0 0.0 0.0 0.0 0.0 999.0 0.0 53.0 0 0
MA0802.1_shift8 (TBR1)				; oligos_7nt_mkv4_m46 versus MA0802.1 (TBR1); m=27/27; ncol2=10; w=8; offset=4; strand=D; shift=8; score=0.443231; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 34509.0 6880.0 70.0 39.0 0.0 2386.0 1175.0 34509.0 c 0 0 0 0 0 0 0 0 359.0 3255.0 254.0 1759.0 6.0 4742.0 2551.0 90.0 g 0 0 0 0 0 0 0 0 3329.0 34509.0 34509.0 88.0 34509.0 157.0 34509.0 584.0 t 0 0 0 0 0 0 0 0 1433.0 4480.0 213.0 34509.0 4.0 34509.0 7001.0 205.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m28_shift5 (oligos_6nt_mkv3_m28oligos_6nt_mkv3_m28)				; oligos_6nt_mkv3_m28 (oligos_6nt_mkv3_m28oligos_6nt_mkv3_m28); m=0 (reference); ncol1=10; shift=5; ncol=21; -----ssCTTGGChs------ ; Alignment reference a 0 0 0 0 0 96 111 0 0 0 0 0 0 214 94 0 0 0 0 0 0 c 0 0 0 0 0 167 210 624 0 0 0 0 624 184 167 0 0 0 0 0 0 g 0 0 0 0 0 209 192 0 0 0 624 624 0 40 214 0 0 0 0 0 0 t 0 0 0 0 0 152 111 0 624 624 0 0 0 186 149 0 0 0 0 0 0
MA0161.2_shift5 (NFIC)				; oligos_6nt_mkv3_m28 versus MA0161.2 (NFIC); m=1/9; ncol2=11; w=10; offset=0; strand=D; shift=5; score=0.850862; -----twCTTGGCAsa----- ; cor=; Ncor= a 0 0 0 0 0 2615.0 3896.0 412.0 154.0 352.0 310.0 223.0 264.0 10158.0 2626.0 3344.0 0 0 0 0 0 c 0 0 0 0 0 2647.0 2137.0 10542.0 303.0 333.0 129.0 121.0 10725.0 397.0 2951.0 2712.0 0 0 0 0 0 g 0 0 0 0 0 2478.0 2086.0 329.0 369.0 177.0 11087.0 10973.0 88.0 478.0 3186.0 2760.0 0 0 0 0 0 t 0 0 0 0 0 3867.0 3488.0 324.0 10781.0 10745.0 81.0 290.0 530.0 574.0 2844.0 2791.0 0 0 0 0 0
MA0670.1_rc_shift6 (NFIA_rc)				; oligos_6nt_mkv3_m28 versus MA0670.1_rc (NFIA_rc); m=2/9; ncol2=10; w=9; offset=1; strand=R; shift=6; score=0.694397; ------wyTTGGCAcc----- ; cor=; Ncor= a 0 0 0 0 0 0 32052.0 17410.0 0.0 0.0 0.0 0.0 0.0 95496.0 23019.0 22282.0 0 0 0 0 0 c 0 0 0 0 0 0 16505.0 29423.0 0.0 0.0 0.0 0.0 98253.0 0.0 35089.0 24321.0 0 0 0 0 0 g 0 0 0 0 0 0 14439.0 21852.0 0.0 0.0 93394.0 93597.0 0.0 0.0 14274.0 22347.0 0 0 0 0 0 t 0 0 0 0 0 0 27709.0 23752.0 89418.0 89071.0 0.0 0.0 0.0 0.0 20706.0 22969.0 0 0 0 0 0
MA0671.1_rc_shift7 (NFIX_rc)				; oligos_6nt_mkv3_m28 versus MA0671.1_rc (NFIX_rc); m=3/9; ncol2=9; w=8; offset=2; strand=R; shift=7; score=0.640024; -------byTGGCacs----- ; cor=; Ncor= a 0 0 0 0 0 0 0 6439.0 2399.0 110.0 0.0 29.0 2539.0 32864.0 8043.0 7378.0 0 0 0 0 0 c 0 0 0 0 0 0 0 9135.0 12688.0 180.0 0.0 3257.0 32864.0 5911.0 10855.0 8725.0 0 0 0 0 0 g 0 0 0 0 0 0 0 9039.0 1356.0 2230.0 32864.0 32864.0 186.0 9695.0 6134.0 8810.0 0 0 0 0 0 t 0 0 0 0 0 0 0 8251.0 32864.0 32864.0 0.0 3.0 132.0 11279.0 7832.0 7951.0 0 0 0 0 0
MA0739.1_rc_shift6 (Hic1_rc)				; oligos_6nt_mkv3_m28 versus MA0739.1_rc (Hic1_rc); m=4/9; ncol2=9; w=9; offset=1; strand=R; shift=6; score=0.634356; ------gGtTGGCAy------ ; cor=; Ncor= a 0 0 0 0 0 0 2692.0 1488.0 614.0 317.0 68.0 0.0 183.0 11007.0 666.0 0 0 0 0 0 0 c 0 0 0 0 0 0 1884.0 1629.0 2267.0 3.0 31.0 121.0 11007.0 73.0 4670.0 0 0 0 0 0 0 g 0 0 0 0 0 0 4822.0 11007.0 1986.0 1999.0 11007.0 11007.0 588.0 422.0 719.0 0 0 0 0 0 0 t 0 0 0 0 0 0 1610.0 1220.0 6140.0 9008.0 88.0 50.0 950.0 62.0 6337.0 0 0 0 0 0 0
MA0502.2_shift4 (NFYB)				; oligos_6nt_mkv3_m28 versus MA0502.2 (NFYB); m=5/9; ncol2=12; w=10; offset=-1; strand=D; shift=4; score=0.596895; ----cyCATTGGCCar----- ; cor=; Ncor= a 0 0 0 0 813.0 438.0 193.0 6983.0 134.0 84.0 53.0 63.0 154.0 154.0 3121.0 2317.0 0 0 0 0 0 c 0 0 0 0 3803.0 2705.0 5447.0 181.0 241.0 37.0 41.0 58.0 6488.0 5823.0 1670.0 1489.0 0 0 0 0 0 g 0 0 0 0 1421.0 901.0 1481.0 57.0 227.0 102.0 7250.0 7272.0 173.0 139.0 1635.0 2663.0 0 0 0 0 0 t 0 0 0 0 1417.0 3410.0 333.0 233.0 6852.0 7231.0 110.0 61.0 639.0 1338.0 1028.0 985.0 0 0 0 0 0
MA1599.1_rc_shift0 (ZNF682_rc)				; oligos_6nt_mkv3_m28 versus MA1599.1_rc (ZNF682_rc); m=6/9; ncol2=16; w=10; offset=-5; strand=R; shift=0; score=0.496466; aywGGGGCTTrGCCyg----- ; cor=; Ncor= a 412.0 180.0 456.0 64.0 7.0 11.0 33.0 7.0 6.0 13.0 358.0 58.0 36.0 89.0 171.0 216.0 0 0 0 0 0 c 194.0 300.0 118.0 32.0 10.0 9.0 13.0 1038.0 22.0 20.0 55.0 105.0 877.0 774.0 349.0 214.0 0 0 0 0 0 g 260.0 254.0 117.0 896.0 1034.0 1033.0 999.0 7.0 31.0 72.0 597.0 795.0 42.0 85.0 234.0 423.0 0 0 0 0 0 t 192.0 324.0 367.0 66.0 7.0 5.0 13.0 6.0 999.0 953.0 48.0 100.0 103.0 110.0 304.0 205.0 0 0 0 0 0
MA1540.1_rc_shift2 (NR5A1_rc)				; oligos_6nt_mkv3_m28 versus MA1540.1_rc (NR5A1_rc); m=7/9; ncol2=11; w=8; offset=-3; strand=R; shift=2; score=0.443243; --ryGrCCTTGrm-------- ; cor=; Ncor= a 0 0 1126.0 287.0 651.0 4118.0 0.0 86.0 143.0 4.0 135.0 2428.0 1093.0 0 0 0 0 0 0 0 0 c 0 0 820.0 1684.0 218.0 381.0 4118.0 4118.0 137.0 287.0 716.0 902.0 1268.0 0 0 0 0 0 0 0 0 g 0 0 1323.0 242.0 4118.0 2021.0 0.0 0.0 128.0 0.0 4118.0 1690.0 991.0 0 0 0 0 0 0 0 0 t 0 0 849.0 4118.0 70.0 951.0 0.0 0.0 4118.0 4118.0 84.0 906.0 767.0 0 0 0 0 0 0 0 0
MA1643.1_rc_shift5 (NFIB_rc)				; oligos_6nt_mkv3_m28 versus MA1643.1_rc (NFIB_rc); m=8/9; ncol2=21; w=10; offset=0; strand=R; shift=5; score=0.434288; -----tdctTGGCAcmrTGCC ; cor=; Ncor= a 0 0 0 0 0 1050.0 1193.0 428.0 211.0 70.0 15.0 20.0 180.0 3083.0 468.0 1388.0 2175.0 544.0 18.0 16.0 11.0 c 0 0 0 0 0 984.0 874.0 2969.0 1055.0 36.0 11.0 23.0 4191.0 451.0 2822.0 1149.0 608.0 175.0 27.0 4372.0 4389.0 g 0 0 0 0 0 1015.0 1193.0 467.0 161.0 373.0 4382.0 4357.0 31.0 181.0 532.0 792.0 1190.0 519.0 4223.0 12.0 11.0 t 0 0 0 0 0 1367.0 1156.0 552.0 2989.0 3937.0 8.0 16.0 14.0 701.0 594.0 1087.0 443.0 3178.0 148.0 16.0 5.0
MA0119.1_rc_shift8 (NFIC::TLX1_rc)				; oligos_6nt_mkv3_m28 versus MA0119.1_rc (NFIC::TLX1_rc); m=9/9; ncol2=14; w=7; offset=3; strand=R; shift=8; score=0.400821; --------TTGGCwyssTGCC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 7.0 3.0 2.0 1.0 1.0 0.0 0.0 0.0 c 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 16.0 2.0 5.0 4.0 5.0 0.0 0.0 16.0 16.0 g 0 0 0 0 0 0 0 0 0.0 0.0 16.0 16.0 0.0 3.0 1.0 8.0 8.0 1.0 16.0 0.0 0.0 t 0 0 0 0 0 0 0 0 14.0 16.0 0.0 0.0 0.0 4.0 7.0 2.0 2.0 14.0 0.0 0.0 0.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m11_shift1 (dyads_m11dyads_m11)				; dyads_m11 (dyads_m11dyads_m11); m=0 (reference); ncol1=10; shift=1; ncol=16; -wvACCACAgs----- ; Alignment reference a 0 197 213 751 0 0 751 0 751 123 175 0 0 0 0 0 c 0 180 241 0 751 749 0 751 0 163 237 0 0 0 0 0 g 0 140 221 0 0 2 0 0 0 365 212 0 0 0 0 0 t 0 234 76 0 0 0 0 0 0 100 127 0 0 0 0 0
MA0002.2_rc_shift1 (RUNX1_rc)				; dyads_m11 versus MA0002.2_rc (RUNX1_rc); m=1/6; ncol2=11; w=10; offset=0; strand=R; shift=1; score=0.845237; -waaCCACAram---- ; cor=; Ncor= a 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 0 0 0 c 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 0 0 0 g 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 0 0 0 t 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0 0 0 0
MA0511.2_shift1 (RUNX2)				; dyads_m11 versus MA0511.2 (RUNX2); m=2/6; ncol2=9; w=9; offset=0; strand=D; shift=1; score=0.724813; -wAACCRCAa------ ; cor=; Ncor= a 0 3872.0 6621.0 6621.0 0.0 0.0 1914.0 0.0 6621.0 4202.0 0 0 0 0 0 0 c 0 1092.0 556.0 325.0 6621.0 6621.0 36.0 6621.0 476.0 677.0 0 0 0 0 0 0 g 0 326.0 1215.0 0.0 0.0 0.0 4707.0 0.0 458.0 1134.0 0 0 0 0 0 0 t 0 2748.0 582.0 0.0 0.0 0.0 120.0 0.0 191.0 607.0 0 0 0 0 0 0
MA0684.2_shift0 (RUNX3)				; dyads_m11 versus MA0684.2 (RUNX3); m=3/6; ncol2=12; w=10; offset=-1; strand=D; shift=0; score=0.675545; awAACCTCAawh---- ; cor=; Ncor= a 7768.0 9558.0 19136.0 26243.0 427.0 495.0 6357.0 611.0 26121.0 16137.0 8778.0 6879.0 0 0 0 0 c 6083.0 5007.0 2662.0 315.0 26293.0 26208.0 419.0 26015.0 414.0 3077.0 5994.0 6900.0 0 0 0 0 g 6685.0 3547.0 3500.0 431.0 198.0 385.0 1911.0 390.0 338.0 4696.0 5642.0 6372.0 0 0 0 0 t 6841.0 9265.0 2079.0 388.0 459.0 289.0 18690.0 361.0 504.0 3467.0 6963.0 7226.0 0 0 0 0
MA0695.1_shift0 (ZBTB7C)				; dyads_m11 versus MA0695.1 (ZBTB7C); m=4/6; ncol2=12; w=10; offset=-1; strand=D; shift=0; score=0.616246; rcgACCACCgam---- ; cor=; Ncor= a 272.0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 253.0 1018.0 333.0 0 0 0 0 c 118.0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 138.0 444.0 315.0 0 0 0 0 g 463.0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 527.0 251.0 196.0 0 0 0 0 t 164.0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 100.0 419.0 174.0 0 0 0 0
MA0130.1_shift2 (ZNF354C)				; dyads_m11 versus MA0130.1 (ZNF354C); m=5/6; ncol2=6; w=6; offset=1; strand=D; shift=2; score=0.498729; --mTCCAC-------- ; cor=; Ncor= a 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 0 c 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 0 g 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 0 t 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0 0
MA1514.1_shift2 (KLF17)				; dyads_m11 versus MA1514.1 (KLF17); m=6/6; ncol2=15; w=9; offset=1; strand=D; shift=2; score=0.412075; --mmCCACgCaCCCmt ; cor=; Ncor= a 0 0 8969.0 19057.0 221.0 144.0 28922.0 85.0 7236.0 4563.0 19142.0 827.0 132.0 221.0 12266.0 3892.0 c 0 0 14366.0 9728.0 30181.0 30201.0 197.0 30107.0 6958.0 29153.0 1076.0 29551.0 30200.0 30199.0 14825.0 4873.0 g 0 0 3318.0 2102.0 122.0 105.0 84.0 53.0 24407.0 104.0 5176.0 1410.0 201.0 80.0 3845.0 2368.0 t 0 0 3579.0 2132.0 114.0 87.0 2495.0 423.0 1243.0 373.0 8373.0 220.0 57.0 233.0 3318.0 23588.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv5_m6_shift1 (oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6)				; oligos_8nt_mkv5_m6 (oligos_8nt_mkv5_m6oligos_8nt_mkv5_m6); m=0 (reference); ncol1=13; shift=1; ncol=18; -sctCAGCTGTCmc---- ; Alignment reference a 0 155 187 156 3 832 6 5 4 2 4 11 224 121 0 0 0 0 c 0 240 292 161 830 1 18 820 2 3 10 747 280 354 0 0 0 0 g 0 259 204 145 3 5 806 11 3 823 8 16 143 170 0 0 0 0 t 0 186 157 378 4 2 10 4 831 12 818 66 193 195 0 0 0 0
MA0499.2_shift1 (MYOD1)				; oligos_8nt_mkv5_m6 versus MA0499.2 (MYOD1); m=1/35; ncol2=13; w=13; offset=0; strand=D; shift=1; score=0.841981; -cwgCACCTGTymy---- ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0 0
MA1641.1_rc_shift1 (MYF5_rc)				; oligos_8nt_mkv5_m6 versus MA1641.1_rc (MYF5_rc); m=2/35; ncol2=12; w=12; offset=0; strand=R; shift=1; score=0.831026; -gvaCAGCTGtbc----- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0 0 0
MA1619.1_rc_shift1 (Ptf1a(var.2)_rc)				; oligos_8nt_mkv5_m6 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=3/35; ncol2=12; w=12; offset=0; strand=R; shift=1; score=0.823899; -rmaCAGCTGtky----- ; cor=; Ncor= a 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 0 0 c 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 0 0 g 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 0 0 t 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0 0 0
MA0500.2_shift1 (MYOG)				; oligos_8nt_mkv5_m6 versus MA0500.2 (MYOG); m=4/35; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.78421; -sarCAGCTGyts----- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0 0
MA0521.1_rc_shift1 (Tcf12_rc)				; oligos_8nt_mkv5_m6 versus MA0521.1_rc (Tcf12_rc); m=5/35; ncol2=11; w=11; offset=0; strand=R; shift=1; score=0.780335; -cwsCAGCTGYy------ ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0
MA0745.2_shift1 (SNAI2)				; oligos_8nt_mkv5_m6 versus MA0745.2 (SNAI2); m=6/35; ncol2=13; w=13; offset=0; strand=D; shift=1; score=0.751582; -aygCACCTGTmry---- ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0 0 0
MA1485.1_shift0 (FERD3L)				; oligos_8nt_mkv5_m6 versus MA1485.1 (FERD3L); m=7/35; ncol2=14; w=13; offset=-1; strand=D; shift=0; score=0.748579; GyrmCAGCTGTyAC---- ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 0 0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 0 0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 0 0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0 0 0
MA0832.1_rc_shift0 (Tcf21_rc)				; oligos_8nt_mkv5_m6 versus MA0832.1_rc (Tcf21_rc); m=8/35; ncol2=14; w=13; offset=-1; strand=R; shift=0; score=0.730642; ryAACAGCTGTTry---- ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0 0
MA1571.1_shift1 (TGIF2LX)				; oligos_8nt_mkv5_m6 versus MA1571.1 (TGIF2LX); m=9/35; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.725257; -TGACAgcTGTCA----- ; cor=; Ncor= a 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 0 0 0 c 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 0 0 0 g 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 0 0 0 t 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0 0 0 0
MA0796.1_rc_shift1 (TGIF1_rc)				; oligos_8nt_mkv5_m6 versus MA0796.1_rc (TGIF1_rc); m=10/35; ncol2=12; w=12; offset=0; strand=R; shift=1; score=0.72103; -TGACAGCTGTCA----- ; cor=; Ncor= a 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 0 0 c 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 0 0 g 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 0 0 t 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0 0 0
MA1618.1_shift1 (Ptf1a)				; oligos_8nt_mkv5_m6 versus MA1618.1 (Ptf1a); m=11/35; ncol2=13; w=13; offset=0; strand=D; shift=1; score=0.718922; -dmaCAGATGttkh---- ; cor=; Ncor= a 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 0 0 0 c 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 0 0 0 g 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 0 0 0 t 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0 0 0 0
MA1572.1_shift1 (TGIF2LY)				; oligos_8nt_mkv5_m6 versus MA1572.1 (TGIF2LY); m=12/35; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.714385; -TGACAgcTGTCA----- ; cor=; Ncor= a 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 0 0 c 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 0 0 g 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 0 0 t 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0 0 0
MA0797.1_rc_shift1 (TGIF2_rc)				; oligos_8nt_mkv5_m6 versus MA0797.1_rc (TGIF2_rc); m=13/35; ncol2=12; w=12; offset=0; strand=R; shift=1; score=0.708317; -TGACAsCTGTCA----- ; cor=; Ncor= a 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 0 0 c 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 0 0 g 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 0 0 t 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0 0 0
MA1593.1_rc_shift1 (ZNF317_rc)				; oligos_8nt_mkv5_m6 versus MA1593.1_rc (ZNF317_rc); m=14/35; ncol2=12; w=12; offset=0; strand=R; shift=1; score=0.704552; -wrTCTGCTGTyw----- ; cor=; Ncor= a 0 4421.0 3658.0 224.0 263.0 1601.0 237.0 206.0 717.0 178.0 1245.0 1378.0 5318.0 0 0 0 0 0 c 0 1481.0 1334.0 206.0 10730.0 289.0 223.0 10374.0 317.0 183.0 480.0 3670.0 1985.0 0 0 0 0 0 g 0 1709.0 4399.0 208.0 186.0 250.0 10608.0 192.0 85.0 10821.0 357.0 2141.0 1201.0 0 0 0 0 0 t 0 3852.0 2072.0 10825.0 284.0 9323.0 395.0 691.0 10344.0 281.0 9381.0 4274.0 2959.0 0 0 0 0 0
MA1642.1_rc_shift1 (NEUROG2(var.2)_rc)				; oligos_8nt_mkv5_m6 versus MA1642.1_rc (NEUROG2(var.2)_rc); m=15/35; ncol2=13; w=13; offset=0; strand=R; shift=1; score=0.700098; -brCCATCTGtyyy---- ; cor=; Ncor= a 0 7184.0 9704.0 4904.0 484.0 32515.0 275.0 2806.0 159.0 237.0 1750.0 4721.0 8378.0 7535.0 0 0 0 0 c 0 8709.0 7581.0 24998.0 33422.0 323.0 418.0 30392.0 301.0 317.0 8039.0 11114.0 10123.0 10813.0 0 0 0 0 g 0 9034.0 10441.0 2966.0 205.0 904.0 952.0 793.0 211.0 33559.0 8154.0 6467.0 6843.0 7353.0 0 0 0 0 t 0 9464.0 6665.0 1523.0 280.0 649.0 32746.0 400.0 33720.0 278.0 16448.0 12089.0 9047.0 8690.0 0 0 0 0
MA1621.1_shift0 (Rbpjl)				; oligos_8nt_mkv5_m6 versus MA1621.1 (Rbpjl); m=16/35; ncol2=14; w=13; offset=-1; strand=D; shift=0; score=0.698601; svmaCACCTGtsyc---- ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0 0
MA1620.1_shift1 (Ptf1a(var.3))				; oligos_8nt_mkv5_m6 versus MA1620.1 (Ptf1a(var.3)); m=17/35; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.697552; -rmaCACCTGtky----- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0 0 0
MA1467.1_shift2 (ATOH1(var.2))				; oligos_8nt_mkv5_m6 versus MA1467.1 (ATOH1(var.2)); m=18/35; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.691289; --AACAGCTGTY------ ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0
MA0783.1_rc_shift1 (PKNOX2_rc)				; oligos_8nt_mkv5_m6 versus MA0783.1_rc (PKNOX2_rc); m=19/35; ncol2=12; w=12; offset=0; strand=R; shift=1; score=0.668787; -TGACAsCTGTCA----- ; cor=; Ncor= a 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 0 0 c 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 0 0 g 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 0 0 t 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0 0 0
MA1472.1_shift2 (BHLHA15(var.2))				; oligos_8nt_mkv5_m6 versus MA1472.1 (BHLHA15(var.2)); m=20/35; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.663793; --avCAGCTGyy------ ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0 0
MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)				; oligos_8nt_mkv5_m6 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=21/35; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.656324; --csCAGCTGsg------ ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0
MA0691.1_rc_shift2 (TFAP4_rc)				; oligos_8nt_mkv5_m6 versus MA0691.1_rc (TFAP4_rc); m=22/35; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.638463; --AwCAGCTGwT------ ; cor=; Ncor= a 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 0 0 c 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 0 0 g 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 0 0 t 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0 0 0
MA1100.2_shift2 (ASCL1)				; oligos_8nt_mkv5_m6 versus MA1100.2 (ASCL1); m=23/35; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.626419; --rrCAGCTGcy------ ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0 0 0
MA0665.1_rc_shift2 (MSC_rc)				; oligos_8nt_mkv5_m6 versus MA0665.1_rc (MSC_rc); m=24/35; ncol2=10; w=10; offset=1; strand=R; shift=2; score=0.624649; --AACAGCTGTT------ ; cor=; Ncor= a 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 0 0 c 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 0 0 g 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 0 0 t 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0 0 0
MA1109.1_rc_shift0 (NEUROD1_rc)				; oligos_8nt_mkv5_m6 versus MA1109.1_rc (NEUROD1_rc); m=25/35; ncol2=13; w=12; offset=-1; strand=R; shift=0; score=0.620493; syrCCATCTGtyc----- ; cor=; Ncor= a 525.0 451.0 580.0 168.0 31.0 2157.0 21.0 90.0 18.0 12.0 47.0 298.0 566.0 0 0 0 0 0 c 628.0 599.0 418.0 1962.0 2231.0 19.0 77.0 2152.0 16.0 13.0 494.0 906.0 726.0 0 0 0 0 0 g 591.0 540.0 911.0 93.0 7.0 51.0 150.0 24.0 7.0 2240.0 452.0 323.0 429.0 0 0 0 0 0 t 538.0 692.0 373.0 59.0 13.0 55.0 2034.0 16.0 2241.0 17.0 1289.0 755.0 561.0 0 0 0 0 0
MA1123.2_shift0 (TWIST1)				; oligos_8nt_mkv5_m6 versus MA1123.2 (TWIST1); m=26/35; ncol2=13; w=12; offset=-1; strand=D; shift=0; score=0.615723; awwCCAGATGtbt----- ; cor=; Ncor= a 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 6823.0 0 0 0 0 0 c 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 6561.0 0 0 0 0 0 g 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 6213.0 0 0 0 0 0 t 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0 7736.0 0 0 0 0 0
MA0816.1_shift2 (Ascl2)				; oligos_8nt_mkv5_m6 versus MA0816.1 (Ascl2); m=27/35; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.614427; --arCAGCTGyy------ ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0
MA0667.1_shift2 (MYF6)				; oligos_8nt_mkv5_m6 versus MA0667.1 (MYF6); m=28/35; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.599686; --AACArCTGTY------ ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0 0 0
MA0048.2_shift2 (NHLH1)				; oligos_8nt_mkv5_m6 versus MA0048.2 (NHLH1); m=29/35; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.570345; --cGCAGCTGCk------ ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0 0
MA0820.1_shift2 (FIGLA)				; oligos_8nt_mkv5_m6 versus MA0820.1 (FIGLA); m=30/35; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.569947; --wmCACCTGkw------ ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0 0
MA0100.3_shift2 (MYB)				; oligos_8nt_mkv5_m6 versus MA0100.3 (MYB); m=31/35; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.543445; --mbCAACTGhm------ ; cor=; Ncor= a 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 0 0 0 0 c 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 0 0 0 0 g 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 0 0 0 0 t 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0 0 0 0 0
MA0774.1_rc_shift6 (MEIS2_rc)				; oligos_8nt_mkv5_m6 versus MA0774.1_rc (MEIS2_rc); m=32/35; ncol2=8; w=8; offset=5; strand=R; shift=6; score=0.513324; ------sCTGTCAa---- ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 0 0 0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 0 0 0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 0 0 0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0 0 0 0
MA0775.1_rc_shift6 (MEIS3_rc)				; oligos_8nt_mkv5_m6 versus MA0775.1_rc (MEIS3_rc); m=33/35; ncol2=8; w=8; offset=5; strand=R; shift=6; score=0.493776; ------scTGTCAw---- ; cor=; Ncor= a 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 0 0 0 c 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 0 0 0 g 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 0 0 0 t 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0 0 0 0
MA0498.2_rc_shift7 (MEIS1_rc)				; oligos_8nt_mkv5_m6 versus MA0498.2_rc (MEIS1_rc); m=34/35; ncol2=7; w=7; offset=6; strand=R; shift=7; score=0.451877; -------cTGTCAw---- ; cor=; Ncor= a 0 0 0 0 0 0 0 15106.0 3861.0 1155.0 0.0 0.0 77159.0 24921.0 0 0 0 0 c 0 0 0 0 0 0 0 29965.0 9263.0 0.0 672.0 77159.0 3174.0 9714.0 0 0 0 0 g 0 0 0 0 0 0 0 14864.0 0.0 77159.0 2903.0 1249.0 5575.0 18797.0 0 0 0 0 t 0 0 0 0 0 0 0 17224.0 77159.0 0.0 77159.0 0.0 8690.0 23727.0 0 0 0 0
MA0782.2_rc_shift4 (PKNOX1_rc)				; oligos_8nt_mkv5_m6 versus MA0782.2_rc (PKNOX1_rc); m=35/35; ncol2=15; w=10; offset=3; strand=R; shift=4; score=0.409887; ----yagCTGTCAcTCAw ; cor=; Ncor= a 0 0 0 0 9877.0 12900.0 6042.0 5092.0 2629.0 886.0 720.0 691.0 36918.0 7333.0 1196.0 1043.0 29794.0 10355.0 c 0 0 0 0 10296.0 9060.0 9128.0 27367.0 2408.0 580.0 2459.0 37713.0 1027.0 26182.0 1330.0 36106.0 3322.0 9535.0 g 0 0 0 0 9268.0 9386.0 16341.0 4759.0 944.0 37846.0 410.0 1004.0 878.0 4123.0 678.0 1160.0 1625.0 9828.0 t 0 0 0 0 10522.0 8617.0 8452.0 2745.0 33982.0 651.0 36374.0 555.0 1140.0 2325.0 36759.0 1654.0 5222.0 10245.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m25_shift2 (oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25)				; oligos_6nt_mkv3_m25 (oligos_6nt_mkv3_m25oligos_6nt_mkv3_m25); m=0 (reference); ncol1=11; shift=2; ncol=14; --rrCAGATGGcv- ; Alignment reference a 0 0 71 106 0 260 0 265 0 0 0 48 79 0 c 0 0 61 46 264 2 0 0 3 2 2 104 70 0 g 0 0 93 94 0 3 264 0 0 263 262 58 71 0 t 0 0 40 19 1 0 1 0 262 0 1 55 45 0
MA1638.1_shift2 (HAND2)				; oligos_6nt_mkv3_m25 versus MA1638.1 (HAND2); m=1/31; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.841177; --amCAGATGby-- ; cor=; Ncor= a 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 0 c 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 0 g 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 0 t 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0 0
MA1109.1_shift1 (NEUROD1)				; oligos_6nt_mkv3_m25 versus MA1109.1 (NEUROD1); m=2/31; ncol2=13; w=11; offset=-1; strand=D; shift=1; score=0.837455; -graCAGATGGyrs ; cor=; Ncor= a 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 c 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 g 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 t 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0
MA1642.1_shift0 (NEUROG2(var.2))				; oligos_6nt_mkv3_m25 versus MA1642.1 (NEUROG2(var.2)); m=3/31; ncol2=13; w=11; offset=-2; strand=D; shift=0; score=0.834399; rrraCAGATGGyv- ; cor=; Ncor= a 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 9464.0 0 c 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 9034.0 0 g 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 8709.0 0 t 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0 7184.0 0
MA0091.1_rc_shift2 (TAL1::TCF3_rc)				; oligos_6nt_mkv3_m25 versus MA0091.1_rc (TAL1::TCF3_rc); m=4/31; ncol2=12; w=11; offset=0; strand=R; shift=2; score=0.745653; --AmCAKMTGkTck ; cor=; Ncor= a 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 c 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 g 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 t 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0
MA0521.1_shift2 (Tcf12)				; oligos_6nt_mkv3_m25 versus MA0521.1 (Tcf12); m=5/31; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.735126; --rRCAGCTGswg- ; cor=; Ncor= a 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0
MA1618.1_shift1 (Ptf1a)				; oligos_6nt_mkv3_m25 versus MA1618.1 (Ptf1a); m=6/31; ncol2=13; w=11; offset=-1; strand=D; shift=1; score=0.730717; -dmaCAGATGttkh ; cor=; Ncor= a 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 c 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 g 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 t 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0
MA1524.1_rc_shift1 (MSGN1_rc)				; oligos_6nt_mkv3_m25 versus MA1524.1_rc (MSGN1_rc); m=7/31; ncol2=12; w=11; offset=-1; strand=R; shift=1; score=0.722928; -srmCAwwTGGys- ; cor=; Ncor= a 0 1228.0 3104.0 3269.0 0.0 6373.0 2607.0 3950.0 0.0 0.0 726.0 408.0 1488.0 0 c 0 1781.0 1503.0 3104.0 6373.0 17.0 814.0 112.0 374.0 17.0 1613.0 3277.0 1615.0 0 g 0 1976.0 3269.0 1132.0 10.0 287.0 190.0 627.0 0.0 6373.0 6373.0 576.0 2080.0 0 t 0 1388.0 514.0 412.0 0.0 10.0 3766.0 2424.0 6373.0 0.0 663.0 3096.0 1190.0 0
MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)				; oligos_6nt_mkv3_m25 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=8/31; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.699983; --rrCAGCTGbt-- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0
MA0633.1_rc_shift2 (Twist2_rc)				; oligos_6nt_mkv3_m25 versus MA0633.1_rc (Twist2_rc); m=9/31; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.697346; --mACATATGky-- ; cor=; Ncor= a 0 0 365.0 745.0 0.0 1000.0 0.0 783.0 0.0 0.0 69.0 200.0 0 0 c 0 0 272.0 155.0 1000.0 0.0 211.0 0.0 0.0 0.0 69.0 298.0 0 0 g 0 0 181.0 50.0 0.0 0.0 0.0 217.0 0.0 1000.0 580.0 200.0 0 0 t 0 0 181.0 50.0 0.0 0.0 789.0 0.0 1000.0 0.0 282.0 302.0 0 0
MA1123.2_shift0 (TWIST1)				; oligos_6nt_mkv3_m25 versus MA1123.2 (TWIST1); m=10/31; ncol2=13; w=11; offset=-2; strand=D; shift=0; score=0.692527; awwCCAGATGtbt- ; cor=; Ncor= a 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 6823.0 0 c 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 6561.0 0 g 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 6213.0 0 t 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0 7736.0 0
MA0461.2_shift2 (Atoh1)				; oligos_6nt_mkv3_m25 versus MA0461.2 (Atoh1); m=11/31; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.687623; --rmCATATGky-- ; cor=; Ncor= a 0 0 655.0 523.0 42.0 1027.0 17.0 1027.0 22.0 2.0 34.0 128.0 0 0 c 0 0 108.0 334.0 1027.0 20.0 10.0 74.0 4.0 1.0 234.0 494.0 0 0 g 0 0 372.0 149.0 8.0 34.0 136.0 0.0 5.0 1027.0 376.0 126.0 0 0 t 0 0 59.0 21.0 0.0 0.0 1027.0 0.0 1027.0 31.0 384.0 533.0 0 0
MA1568.1_rc_shift1 (TCF21(var.2)_rc)				; oligos_6nt_mkv3_m25 versus MA1568.1_rc (TCF21(var.2)_rc); m=12/31; ncol2=12; w=11; offset=-1; strand=R; shift=1; score=0.685516; -yrmCATATGGtg- ; cor=; Ncor= a 0 105.0 431.0 339.0 18.0 872.0 0.0 872.0 14.0 2.0 28.0 194.0 186.0 0 c 0 315.0 6.0 533.0 872.0 0.0 71.0 67.0 164.0 12.0 205.0 352.0 175.0 0 g 0 150.0 441.0 86.0 0.0 107.0 43.0 54.0 0.0 872.0 872.0 20.0 398.0 0 t 0 301.0 87.0 19.0 4.0 21.0 872.0 0.0 872.0 4.0 89.0 872.0 113.0 0
MA0668.1_rc_shift2 (NEUROD2_rc)				; oligos_6nt_mkv3_m25 versus MA0668.1_rc (NEUROD2_rc); m=13/31; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.681899; --rmCATATGky-- ; cor=; Ncor= a 0 0 685.0 548.0 112.0 1587.0 4.0 1587.0 52.0 0.0 0.0 95.0 0 0 c 0 0 101.0 705.0 1587.0 0.0 38.0 0.0 308.0 95.0 240.0 769.0 0 0 g 0 0 592.0 373.0 0.0 328.0 120.0 156.0 0.0 1587.0 875.0 119.0 0 0 t 0 0 209.0 0.0 0.0 0.0 1587.0 0.0 1587.0 0.0 527.0 604.0 0 0
MA1468.1_rc_shift2 (ATOH7_rc)				; oligos_6nt_mkv3_m25 versus MA1468.1_rc (ATOH7_rc); m=14/31; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.665463; --rmCATATGkT-- ; cor=; Ncor= a 0 0 312.0 291.0 0.0 712.0 0.0 712.0 58.0 0.0 45.0 62.0 0 0 c 0 0 2.0 261.0 712.0 25.0 78.0 59.0 102.0 0.0 154.0 142.0 0 0 g 0 0 400.0 155.0 0.0 25.0 180.0 106.0 0.0 712.0 211.0 97.0 0 0 t 0 0 17.0 5.0 0.0 0.0 712.0 15.0 712.0 0.0 302.0 712.0 0 0
MA1570.1_shift2 (TFAP4(var.2))				; oligos_6nt_mkv3_m25 versus MA1570.1 (TFAP4(var.2)); m=15/31; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.664753; --ahCAyrTGkt-- ; cor=; Ncor= a 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 0 c 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 0 g 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 0 t 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0 0
MA0820.1_rc_shift2 (FIGLA_rc)				; oligos_6nt_mkv3_m25 versus MA0820.1_rc (FIGLA_rc); m=16/31; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.661516; --wmCAGGTGkw-- ; cor=; Ncor= a 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0
MA1108.2_shift2 (MXI1)				; oligos_6nt_mkv3_m25 versus MA1108.2 (MXI1); m=17/31; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.660533; --rvCACATGkc-- ; cor=; Ncor= a 0 0 5786.0 6184.0 109.0 21870.0 10.0 20506.0 0.0 527.0 2833.0 4945.0 0 0 c 0 0 4724.0 5841.0 21382.0 1.0 21552.0 0.0 507.0 114.0 5329.0 6343.0 0 0 g 0 0 6326.0 6078.0 97.0 170.0 18.0 1542.0 0.0 21232.0 7228.0 5394.0 0 0 t 0 0 5212.0 3945.0 460.0 7.0 468.0 0.0 21541.0 175.0 6658.0 5366.0 0 0
MA1100.2_shift2 (ASCL1)				; oligos_6nt_mkv3_m25 versus MA1100.2 (ASCL1); m=18/31; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.651989; --rrCAGCTGcy-- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0
MA1635.1_shift2 (BHLHE22(var.2))				; oligos_6nt_mkv3_m25 versus MA1635.1 (BHLHE22(var.2)); m=19/31; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.650684; --csCAGCTGsg-- ; cor=; Ncor= a 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0
MA0827.1_rc_shift2 (OLIG3_rc)				; oligos_6nt_mkv3_m25 versus MA0827.1_rc (OLIG3_rc); m=20/31; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.650128; --rvCATATGkT-- ; cor=; Ncor= a 0 0 1915.0 1010.0 275.0 1915.0 0.0 1915.0 22.0 3.0 6.0 132.0 0 0 c 0 0 176.0 904.0 1915.0 2.0 11.0 72.0 99.0 0.0 208.0 427.0 0 0 g 0 0 964.0 662.0 4.0 224.0 103.0 26.0 10.0 1915.0 1115.0 204.0 0 0 t 0 0 265.0 28.0 4.0 56.0 1915.0 0.0 1915.0 222.0 800.0 1915.0 0 0
MA0100.3_rc_shift2 (MYB_rc)				; oligos_6nt_mkv3_m25 versus MA0100.3_rc (MYB_rc); m=21/31; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.647301; --kdCAGTTGvk-- ; cor=; Ncor= a 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 0 c 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 0 g 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 0 t 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0 0
MA0818.1_rc_shift2 (BHLHE22_rc)				; oligos_6nt_mkv3_m25 versus MA0818.1_rc (BHLHE22_rc); m=22/31; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.644857; --rrCATATGkT-- ; cor=; Ncor= a 0 0 520.0 201.0 4.0 520.0 2.0 520.0 8.0 0.0 4.0 21.0 0 0 c 0 0 21.0 123.0 520.0 0.0 2.0 0.0 24.0 0.0 99.0 172.0 0 0 g 0 0 254.0 193.0 2.0 48.0 4.0 2.0 6.0 520.0 229.0 26.0 0 0 t 0 0 36.0 4.0 0.0 11.0 520.0 0.0 520.0 6.0 189.0 520.0 0 0
MA0678.1_rc_shift2 (OLIG2_rc)				; oligos_6nt_mkv3_m25 versus MA0678.1_rc (OLIG2_rc); m=23/31; ncol2=10; w=10; offset=0; strand=R; shift=2; score=0.63765; --rmCATATGkT-- ; cor=; Ncor= a 0 0 1609.0 744.0 117.0 1609.0 4.0 1609.0 22.0 0.0 16.0 108.0 0 0 c 0 0 57.0 866.0 1609.0 0.0 18.0 0.0 53.0 4.0 142.0 283.0 0 0 g 0 0 689.0 396.0 3.0 159.0 22.0 0.0 2.0 1609.0 929.0 90.0 0 0 t 0 0 146.0 4.0 10.0 21.0 1609.0 0.0 1609.0 74.0 680.0 1609.0 0 0
MA0623.2_shift2 (NEUROG1)				; oligos_6nt_mkv3_m25 versus MA0623.2 (NEUROG1); m=24/31; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.636787; --raCATATGky-- ; cor=; Ncor= a 0 0 1658.0 1898.0 0.0 3518.0 4.0 3518.0 0.0 0.0 23.0 68.0 0 0 c 0 0 118.0 876.0 3518.0 0.0 114.0 0.0 86.0 0.0 655.0 1844.0 0 0 g 0 0 1860.0 729.0 8.0 63.0 0.0 80.0 0.0 3518.0 907.0 187.0 0 0 t 0 0 33.0 14.0 0.0 0.0 3518.0 0.0 3518.0 0.0 1933.0 1673.0 0 0
MA0698.1_shift0 (ZBTB18)				; oligos_6nt_mkv3_m25 versus MA0698.1 (ZBTB18); m=25/31; ncol2=13; w=11; offset=-2; strand=D; shift=0; score=0.613061; hatCCAGATGTkb- ; cor=; Ncor= a 3561.0 7064.0 1177.0 3618.0 21.0 13670.0 3.0 13670.0 14.0 3.0 48.0 210.0 1725.0 0 c 4188.0 753.0 1937.0 13670.0 13670.0 5.0 245.0 1048.0 15.0 1.0 314.0 177.0 4042.0 0 g 2499.0 2535.0 5212.0 1899.0 3.0 33.0 13670.0 278.0 94.0 13670.0 36.0 5530.0 3876.0 0 t 3423.0 3319.0 13670.0 60.0 8.0 206.0 6.0 297.0 13670.0 1.0 13670.0 8140.0 4027.0 0
MA0607.1_rc_shift3 (Bhlha15_rc)				; oligos_6nt_mkv3_m25 versus MA0607.1_rc (Bhlha15_rc); m=26/31; ncol2=8; w=8; offset=1; strand=R; shift=3; score=0.600636; ---aCATATGs--- ; cor=; Ncor= a 0 0 0 614.0 0.0 999.0 0.0 799.0 0.0 0.0 1.0 0 0 0 c 0 0 0 154.0 999.0 0.0 0.0 200.0 0.0 0.0 286.0 0 0 0 g 0 0 0 231.0 0.0 0.0 200.0 0.0 0.0 999.0 571.0 0 0 0 t 0 0 0 1.0 0.0 0.0 799.0 0.0 999.0 0.0 143.0 0 0 0
MA0103.3_rc_shift1 (ZEB1_rc)				; oligos_6nt_mkv3_m25 versus MA0103.3_rc (ZEB1_rc); m=27/31; ncol2=11; w=10; offset=-1; strand=R; shift=1; score=0.591097; -sssCAGGTGss-- ; cor=; Ncor= a 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 0 c 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 0 g 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 0 t 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0 0
MA1485.1_rc_shift0 (FERD3L_rc)				; oligos_6nt_mkv3_m25 versus MA1485.1_rc (FERD3L_rc); m=28/31; ncol2=14; w=11; offset=-2; strand=R; shift=0; score=0.569324; GTrACAGCTGkyrC ; cor=; Ncor= a 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0
MA0095.2_shift3 (YY1)				; oligos_6nt_mkv3_m25 versus MA0095.2 (YY1); m=29/31; ncol2=12; w=10; offset=1; strand=D; shift=3; score=0.546367; ---cAArATGGCkg ; cor=; Ncor= a 0 0 0 1126.0 6975.0 6741.0 2506.0 7171.0 0.0 11.0 13.0 812.0 867.0 899.0 c 0 0 0 4583.0 0.0 99.0 1117.0 0.0 12.0 0.0 0.0 5637.0 1681.0 875.0 g 0 0 0 801.0 181.0 268.0 3282.0 0.0 0.0 7160.0 7158.0 38.0 2765.0 4655.0 t 0 0 0 661.0 15.0 63.0 266.0 0.0 7159.0 0.0 0.0 684.0 1858.0 742.0
MA0092.1_rc_shift0 (Hand1::Tcf3_rc)				; oligos_6nt_mkv3_m25 versus MA0092.1_rc (Hand1::Tcf3_rc); m=30/31; ncol2=10; w=8; offset=-2; strand=R; shift=0; score=0.448466; awkCCAGAys---- ; cor=; Ncor= a 16.0 10.0 5.0 1.0 0.0 29.0 1.0 24.0 4.0 7.0 0 0 0 0 c 4.0 3.0 1.0 25.0 29.0 0.0 0.0 1.0 15.0 10.0 0 0 0 0 g 4.0 0.0 14.0 3.0 0.0 0.0 28.0 2.0 0.0 8.0 0 0 0 0 t 5.0 16.0 9.0 0.0 0.0 0.0 0.0 2.0 10.0 4.0 0 0 0 0
MA0748.2_shift5 (YY2)				; oligos_6nt_mkv3_m25 versus MA0748.2 (YY2); m=31/31; ncol2=11; w=8; offset=3; strand=D; shift=5; score=0.429285; -----msATGGCGG ; cor=; Ncor= a 0 0 0 0 0 1973.0 1280.0 5263.0 58.0 48.0 126.0 109.0 64.0 411.0 c 0 0 0 0 0 1591.0 1607.0 46.0 273.0 120.0 101.0 5384.0 330.0 516.0 g 0 0 0 0 0 1068.0 2143.0 359.0 125.0 5509.0 5376.0 25.0 5231.0 4474.0 t 0 0 0 0 0 1072.0 674.0 36.0 5248.0 27.0 101.0 186.0 79.0 303.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m10_shift0 (oligos_7nt_mkv4_m10oligos_7nt_mkv4_m10)				; oligos_7nt_mkv4_m10 (oligos_7nt_mkv4_m10oligos_7nt_mkv4_m10); m=0 (reference); ncol1=14; shift=0; ncol=17; scTGCACCTGCTsy--- ; Alignment reference a 43 44 42 5 0 271 4 3 3 0 0 1 49 37 0 0 0 c 73 127 12 20 274 3 231 271 1 3 241 20 83 115 0 0 0 g 97 52 24 246 3 1 33 2 0 274 3 2 102 46 0 0 0 t 64 54 199 6 0 2 9 1 273 0 33 254 43 79 0 0 0
MA1631.1_shift1 (ASCL1(var.2))				; oligos_7nt_mkv4_m10 versus MA1631.1 (ASCL1(var.2)); m=1/23; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.836145; -cdgCACCTGCysc--- ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0
MA0830.2_shift1 (TCF4)				; oligos_7nt_mkv4_m10 versus MA0830.2 (TCF4); m=2/23; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.82943; -cggCACCTGccss--- ; cor=; Ncor= a 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 0 c 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 0 g 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 0 t 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0 0
MA0745.2_shift1 (SNAI2)				; oligos_7nt_mkv4_m10 versus MA0745.2 (SNAI2); m=3/23; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.74467; -aygCACCTGTmry--- ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0 0
MA0499.2_shift1 (MYOD1)				; oligos_7nt_mkv4_m10 versus MA0499.2 (MYOD1); m=4/23; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.735107; -cwgCACCTGTymy--- ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0
MA1621.1_shift0 (Rbpjl)				; oligos_7nt_mkv4_m10 versus MA1621.1 (Rbpjl); m=5/23; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.734727; svmaCACCTGtsyc--- ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0
MA1648.1_shift2 (TCF12(var.2))				; oligos_7nt_mkv4_m10 versus MA1648.1 (TCF12(var.2)); m=6/23; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.68318; --ssCACCTGCys---- ; cor=; Ncor= a 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 0 c 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 0 g 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 0 t 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0 0
MA0522.3_shift2 (TCF3)				; oligos_7nt_mkv4_m10 versus MA0522.3 (TCF3); m=7/23; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.677302; --svCACCTGCss---- ; cor=; Ncor= a 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 0 c 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 0 g 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 0 t 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0 0
MA1559.1_rc_shift2 (SNAI3_rc)				; oligos_7nt_mkv4_m10 versus MA1559.1_rc (SNAI3_rc); m=8/23; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.649444; --trCACCTGyt----- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0 0
MA0500.2_shift1 (MYOG)				; oligos_7nt_mkv4_m10 versus MA0500.2 (MYOG); m=9/23; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.646776; -sarCAGCTGyts---- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0
MA0103.3_shift2 (ZEB1)				; oligos_7nt_mkv4_m10 versus MA0103.3 (ZEB1); m=10/23; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.640453; --ssCACCTGsss---- ; cor=; Ncor= a 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 0 c 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 0 g 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 0 t 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0 0
MA1558.1_rc_shift2 (SNAI1_rc)				; oligos_7nt_mkv4_m10 versus MA1558.1_rc (SNAI1_rc); m=11/23; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.627293; --yrCACCTGyh----- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0 0
MA1620.1_shift1 (Ptf1a(var.3))				; oligos_7nt_mkv4_m10 versus MA1620.1 (Ptf1a(var.3)); m=12/23; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.624997; -rmaCACCTGtky---- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0 0
MA0521.1_rc_shift1 (Tcf12_rc)				; oligos_7nt_mkv4_m10 versus MA0521.1_rc (Tcf12_rc); m=13/23; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.610971; -cwsCAGCTGYy----- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0
MA1100.2_rc_shift2 (ASCL1_rc)				; oligos_7nt_mkv4_m10 versus MA1100.2_rc (ASCL1_rc); m=14/23; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.580681; --rgCAGCTGyy----- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0
MA0816.1_shift2 (Ascl2)				; oligos_7nt_mkv4_m10 versus MA0816.1 (Ascl2); m=15/23; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.557461; --arCAGCTGyy----- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0
MA0820.1_shift2 (FIGLA)				; oligos_7nt_mkv4_m10 versus MA0820.1 (FIGLA); m=16/23; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.553169; --wmCACCTGkw----- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0
MA0048.2_shift2 (NHLH1)				; oligos_7nt_mkv4_m10 versus MA0048.2 (NHLH1); m=17/23; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.551115; --cGCAGCTGCk----- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0
MA0744.2_rc_shift1 (SCRT2_rc)				; oligos_7nt_mkv4_m10 versus MA0744.2_rc (SCRT2_rc); m=18/23; ncol2=16; w=13; offset=1; strand=R; shift=1; score=0.543835; -waccACCTGTTGmwyy ; cor=; Ncor= a 0 21453.0 18751.0 15588.0 11335.0 58889.0 2140.0 1471.0 1184.0 204.0 953.0 4384.0 3732.0 17252.0 16873.0 12071.0 15730.0 c 0 12430.0 14716.0 25288.0 38133.0 1168.0 60636.0 56105.0 252.0 319.0 1878.0 2265.0 1339.0 35769.0 12473.0 17497.0 17680.0 g 0 13846.0 16085.0 11351.0 5661.0 3475.0 972.0 728.0 294.0 64856.0 413.0 5536.0 59161.0 7236.0 6319.0 12732.0 13345.0 t 0 17881.0 16058.0 13383.0 10481.0 2078.0 1862.0 7306.0 63880.0 231.0 62366.0 53425.0 1378.0 5353.0 29945.0 23310.0 18855.0
MA1628.1_rc_shift4 (Zic1::Zic2_rc)				; oligos_7nt_mkv4_m10 versus MA1628.1_rc (Zic1::Zic2_rc); m=19/23; ncol2=11; w=10; offset=4; strand=R; shift=4; score=0.538494; ----ysCCTGCTGbg-- ; cor=; Ncor= a 0 0 0 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 0 0 c 0 0 0 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 0 0 g 0 0 0 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 0 0 t 0 0 0 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0 0 0
MA1635.1_shift2 (BHLHE22(var.2))				; oligos_7nt_mkv4_m10 versus MA1635.1 (BHLHE22(var.2)); m=20/23; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.508653; --csCAGCTGsg----- ; cor=; Ncor= a 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 c 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 g 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 t 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0
MA1560.1_rc_shift2 (SOHLH2_rc)				; oligos_7nt_mkv4_m10 versus MA1560.1_rc (SOHLH2_rc); m=21/23; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.506971; --ygCACGTGcr----- ; cor=; Ncor= a 0 0 224.0 153.0 4.0 1212.0 15.0 7.0 0.0 70.0 276.0 313.0 0 0 0 0 0 c 0 0 369.0 172.0 1212.0 0.0 1212.0 11.0 41.0 29.0 1212.0 184.0 0 0 0 0 0 g 0 0 239.0 1212.0 4.0 65.0 0.0 1212.0 0.0 1212.0 264.0 485.0 0 0 0 0 0 t 0 0 381.0 272.0 41.0 36.0 14.0 0.0 1212.0 45.0 172.0 230.0 0 0 0 0 0
MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)				; oligos_7nt_mkv4_m10 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=22/23; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.505519; --rrCAGCTGbt----- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0
MA1629.1_rc_shift3 (Zic2_rc)				; oligos_7nt_mkv4_m10 versus MA1629.1_rc (Zic2_rc); m=23/23; ncol2=14; w=11; offset=3; strand=R; shift=3; score=0.481378; ---cyyCCTGCTGtGmk ; cor=; Ncor= a 0 0 0 2104.0 1641.0 2472.0 154.0 410.0 441.0 298.0 67.0 268.0 120.0 2437.0 240.0 3893.0 2506.0 c 0 0 0 5314.0 4979.0 4911.0 11465.0 11184.0 735.0 269.0 11484.0 186.0 188.0 829.0 585.0 3821.0 2761.0 g 0 0 0 2168.0 1661.0 1476.0 204.0 133.0 118.0 11272.0 228.0 391.0 11476.0 1765.0 9933.0 1755.0 3507.0 t 0 0 0 2333.0 3638.0 3060.0 96.0 192.0 10625.0 80.0 140.0 11074.0 135.0 6888.0 1161.0 2450.0 3145.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m13_shift4 (oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13)				; oligos_7nt_mkv4_m13 (oligos_7nt_mkv4_m13oligos_7nt_mkv4_m13); m=0 (reference); ncol1=11; shift=4; ncol=16; ----rvACAGATGsc- ; Alignment reference a 0 0 0 0 78 77 283 6 275 4 283 0 4 47 68 0 c 0 0 0 0 59 85 0 269 2 0 0 5 0 82 101 0 g 0 0 0 0 84 91 0 0 6 274 0 0 278 112 50 0 t 0 0 0 0 62 30 0 8 0 5 0 278 1 42 64 0
MA1638.1_shift5 (HAND2)				; oligos_7nt_mkv4_m13 versus MA1638.1 (HAND2); m=1/36; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.835192; -----amCAGATGby- ; cor=; Ncor= a 0 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 c 0 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 g 0 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 t 0 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0
MA1642.1_shift3 (NEUROG2(var.2))				; oligos_7nt_mkv4_m13 versus MA1642.1 (NEUROG2(var.2)); m=2/36; ncol2=13; w=11; offset=-1; strand=D; shift=3; score=0.794319; ---rrraCAGATGGyv ; cor=; Ncor= a 0 0 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 9464.0 c 0 0 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 9034.0 g 0 0 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 8709.0 t 0 0 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0 7184.0
MA1109.1_shift4 (NEUROD1)				; oligos_7nt_mkv4_m13 versus MA1109.1 (NEUROD1); m=3/36; ncol2=13; w=11; offset=0; strand=D; shift=4; score=0.790608; ----graCAGATGGyr ; cor=; Ncor= a 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 c 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 g 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 t 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0
MA1618.1_shift4 (Ptf1a)				; oligos_7nt_mkv4_m13 versus MA1618.1 (Ptf1a); m=4/36; ncol2=13; w=11; offset=0; strand=D; shift=4; score=0.781177; ----dmaCAGATGttk ; cor=; Ncor= a 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 c 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 g 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 t 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0
MA0633.1_rc_shift5 (Twist2_rc)				; oligos_7nt_mkv4_m13 versus MA0633.1_rc (Twist2_rc); m=5/36; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.725064; -----mACATATGky- ; cor=; Ncor= a 0 0 0 0 0 365.0 745.0 0.0 1000.0 0.0 783.0 0.0 0.0 69.0 200.0 0 c 0 0 0 0 0 272.0 155.0 1000.0 0.0 211.0 0.0 0.0 0.0 69.0 298.0 0 g 0 0 0 0 0 181.0 50.0 0.0 0.0 0.0 217.0 0.0 1000.0 580.0 200.0 0 t 0 0 0 0 0 181.0 50.0 0.0 0.0 789.0 0.0 1000.0 0.0 282.0 302.0 0
MA1472.1_rc_shift5 (BHLHA15(var.2)_rc)				; oligos_7nt_mkv4_m13 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=6/36; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.720624; -----rrCAGCTGbt- ; cor=; Ncor= a 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 c 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 g 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 t 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0
MA0461.2_shift5 (Atoh1)				; oligos_7nt_mkv4_m13 versus MA0461.2 (Atoh1); m=7/36; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.708703; -----rmCATATGky- ; cor=; Ncor= a 0 0 0 0 0 655.0 523.0 42.0 1027.0 17.0 1027.0 22.0 2.0 34.0 128.0 0 c 0 0 0 0 0 108.0 334.0 1027.0 20.0 10.0 74.0 4.0 1.0 234.0 494.0 0 g 0 0 0 0 0 372.0 149.0 8.0 34.0 136.0 0.0 5.0 1027.0 376.0 126.0 0 t 0 0 0 0 0 59.0 21.0 0.0 0.0 1027.0 0.0 1027.0 31.0 384.0 533.0 0
MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)				; oligos_7nt_mkv4_m13 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=8/36; ncol2=12; w=11; offset=0; strand=R; shift=4; score=0.699104; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0
MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)				; oligos_7nt_mkv4_m13 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=9/36; ncol2=12; w=11; offset=0; strand=R; shift=4; score=0.689437; ----rmaCAGCTGtky ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0
MA1570.1_shift5 (TFAP4(var.2))				; oligos_7nt_mkv4_m13 versus MA1570.1 (TFAP4(var.2)); m=10/36; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.68741; -----ahCAyrTGkt- ; cor=; Ncor= a 0 0 0 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 c 0 0 0 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 g 0 0 0 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 t 0 0 0 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0
MA1641.1_shift4 (MYF5)				; oligos_7nt_mkv4_m13 versus MA1641.1 (MYF5); m=11/36; ncol2=12; w=11; offset=0; strand=D; shift=4; score= 0.687; ----gvaCAGCTGtbc ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0
MA0499.2_rc_shift3 (MYOD1_rc)				; oligos_7nt_mkv4_m13 versus MA0499.2_rc (MYOD1_rc); m=12/36; ncol2=13; w=11; offset=-1; strand=R; shift=3; score=0.684998; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0
MA0669.1_shift5 (NEUROG2)				; oligos_7nt_mkv4_m13 versus MA0669.1 (NEUROG2); m=13/36; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.684488; -----raCATATGtY- ; cor=; Ncor= a 0 0 0 0 0 246.0 426.0 1.0 426.0 4.0 426.0 5.0 0.0 3.0 0.0 0 c 0 0 0 0 0 2.0 150.0 426.0 0.0 5.0 8.0 3.0 0.0 170.0 307.0 0 g 0 0 0 0 0 180.0 65.0 0.0 3.0 20.0 5.0 0.0 426.0 147.0 0.0 0 t 0 0 0 0 0 0.0 0.0 5.0 0.0 426.0 0.0 426.0 0.0 426.0 119.0 0
MA1467.1_shift5 (ATOH1(var.2))				; oligos_7nt_mkv4_m13 versus MA1467.1 (ATOH1(var.2)); m=14/36; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.684181; -----AACAGCTGTY- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0
MA1123.2_shift3 (TWIST1)				; oligos_7nt_mkv4_m13 versus MA1123.2 (TWIST1); m=15/36; ncol2=13; w=11; offset=-1; strand=D; shift=3; score=0.682129; ---awwCCAGATGtbt ; cor=; Ncor= a 0 0 0 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 6823.0 c 0 0 0 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 6561.0 g 0 0 0 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 6213.0 t 0 0 0 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0 7736.0
MA1524.1_rc_shift4 (MSGN1_rc)				; oligos_7nt_mkv4_m13 versus MA1524.1_rc (MSGN1_rc); m=16/36; ncol2=12; w=11; offset=0; strand=R; shift=4; score=0.678881; ----srmCAwwTGGys ; cor=; Ncor= a 0 0 0 0 1228.0 3104.0 3269.0 0.0 6373.0 2607.0 3950.0 0.0 0.0 726.0 408.0 1488.0 c 0 0 0 0 1781.0 1503.0 3104.0 6373.0 17.0 814.0 112.0 374.0 17.0 1613.0 3277.0 1615.0 g 0 0 0 0 1976.0 3269.0 1132.0 10.0 287.0 190.0 627.0 0.0 6373.0 6373.0 576.0 2080.0 t 0 0 0 0 1388.0 514.0 412.0 0.0 10.0 3766.0 2424.0 6373.0 0.0 663.0 3096.0 1190.0
MA1468.1_rc_shift5 (ATOH7_rc)				; oligos_7nt_mkv4_m13 versus MA1468.1_rc (ATOH7_rc); m=17/36; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.676637; -----rmCATATGkT- ; cor=; Ncor= a 0 0 0 0 0 312.0 291.0 0.0 712.0 0.0 712.0 58.0 0.0 45.0 62.0 0 c 0 0 0 0 0 2.0 261.0 712.0 25.0 78.0 59.0 102.0 0.0 154.0 142.0 0 g 0 0 0 0 0 400.0 155.0 0.0 25.0 180.0 106.0 0.0 712.0 211.0 97.0 0 t 0 0 0 0 0 17.0 5.0 0.0 0.0 712.0 15.0 712.0 0.0 302.0 712.0 0
MA0623.2_rc_shift5 (NEUROG1_rc)				; oligos_7nt_mkv4_m13 versus MA0623.2_rc (NEUROG1_rc); m=18/36; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.669338; -----rmCATATGty- ; cor=; Ncor= a 0 0 0 0 0 1673.0 1933.0 0.0 3518.0 0.0 3518.0 0.0 0.0 14.0 33.0 0 c 0 0 0 0 0 187.0 907.0 3518.0 0.0 80.0 0.0 63.0 8.0 729.0 1860.0 0 g 0 0 0 0 0 1844.0 655.0 0.0 86.0 0.0 114.0 0.0 3518.0 876.0 118.0 0 t 0 0 0 0 0 68.0 23.0 0.0 0.0 3518.0 4.0 3518.0 0.0 1898.0 1658.0 0
MA0820.1_rc_shift5 (FIGLA_rc)				; oligos_7nt_mkv4_m13 versus MA0820.1_rc (FIGLA_rc); m=19/36; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.668118; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0
MA1646.1_shift4 (OSR2)				; oligos_7nt_mkv4_m13 versus MA1646.1 (OSR2); m=20/36; ncol2=12; w=11; offset=0; strand=D; shift=4; score=0.665163; ----amaCAGAAGChr ; cor=; Ncor= a 0 0 0 0 4437.0 4244.0 8520.0 254.0 13599.0 216.0 11678.0 13725.0 416.0 666.0 4386.0 4048.0 c 0 0 0 0 3641.0 4206.0 2221.0 13937.0 197.0 229.0 703.0 288.0 170.0 12109.0 4274.0 3304.0 g 0 0 0 0 3246.0 3006.0 2117.0 406.0 737.0 14206.0 901.0 516.0 13982.0 841.0 2266.0 4726.0 t 0 0 0 0 3484.0 3352.0 1950.0 211.0 275.0 157.0 1526.0 279.0 240.0 1192.0 3882.0 2730.0
MA1559.1_shift5 (SNAI3)				; oligos_7nt_mkv4_m13 versus MA1559.1 (SNAI3); m=21/36; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.659055; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0
MA0521.1_shift5 (Tcf12)				; oligos_7nt_mkv4_m13 versus MA0521.1 (Tcf12); m=22/36; ncol2=11; w=10; offset=1; strand=D; shift=5; score=0.658812; -----rRCAGCTGswg ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0
MA1100.2_shift5 (ASCL1)				; oligos_7nt_mkv4_m13 versus MA1100.2 (ASCL1); m=23/36; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.652632; -----rrCAGCTGcy- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0
MA0745.2_rc_shift3 (SNAI2_rc)				; oligos_7nt_mkv4_m13 versus MA0745.2_rc (SNAI2_rc); m=24/36; ncol2=13; w=11; offset=-1; strand=R; shift=3; score=0.64966; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0
MA1108.2_shift5 (MXI1)				; oligos_7nt_mkv4_m13 versus MA1108.2 (MXI1); m=25/36; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.649259; -----rvCACATGkc- ; cor=; Ncor= a 0 0 0 0 0 5786.0 6184.0 109.0 21870.0 10.0 20506.0 0.0 527.0 2833.0 4945.0 0 c 0 0 0 0 0 4724.0 5841.0 21382.0 1.0 21552.0 0.0 507.0 114.0 5329.0 6343.0 0 g 0 0 0 0 0 6326.0 6078.0 97.0 170.0 18.0 1542.0 0.0 21232.0 7228.0 5394.0 0 t 0 0 0 0 0 5212.0 3945.0 460.0 7.0 468.0 0.0 21541.0 175.0 6658.0 5366.0 0
MA0667.1_rc_shift5 (MYF6_rc)				; oligos_7nt_mkv4_m13 versus MA0667.1_rc (MYF6_rc); m=26/36; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.647245; -----RACAGyTGTT- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 c 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 g 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 t 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0
MA0100.3_rc_shift5 (MYB_rc)				; oligos_7nt_mkv4_m13 versus MA0100.3_rc (MYB_rc); m=27/36; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.644526; -----kdCAGTTGvk- ; cor=; Ncor= a 0 0 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 c 0 0 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 g 0 0 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 t 0 0 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0
MA0817.1_shift4 (BHLHE23)				; oligos_7nt_mkv4_m13 versus MA0817.1 (BHLHE23); m=28/36; ncol2=12; w=11; offset=0; strand=D; shift=4; score=0.643663; ----aAmCATATGkTw ; cor=; Ncor= a 0 0 0 0 2550.0 5005.0 2779.0 21.0 5005.0 0.0 5005.0 47.0 0.0 13.0 243.0 1523.0 c 0 0 0 0 686.0 55.0 1286.0 5005.0 0.0 4.0 5.0 115.0 4.0 1203.0 1468.0 911.0 g 0 0 0 0 858.0 890.0 932.0 0.0 67.0 1.0 3.0 5.0 5005.0 1771.0 92.0 964.0 t 0 0 0 0 912.0 44.0 8.0 0.0 17.0 5005.0 0.0 5005.0 7.0 2018.0 5005.0 1606.0
MA0668.1_rc_shift5 (NEUROD2_rc)				; oligos_7nt_mkv4_m13 versus MA0668.1_rc (NEUROD2_rc); m=29/36; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.643073; -----rmCATATGky- ; cor=; Ncor= a 0 0 0 0 0 685.0 548.0 112.0 1587.0 4.0 1587.0 52.0 0.0 0.0 95.0 0 c 0 0 0 0 0 101.0 705.0 1587.0 0.0 38.0 0.0 308.0 95.0 240.0 769.0 0 g 0 0 0 0 0 592.0 373.0 0.0 328.0 120.0 156.0 0.0 1587.0 875.0 119.0 0 t 0 0 0 0 0 209.0 0.0 0.0 0.0 1587.0 0.0 1587.0 0.0 527.0 604.0 0
MA0665.1_rc_shift5 (MSC_rc)				; oligos_7nt_mkv4_m13 versus MA0665.1_rc (MSC_rc); m=30/36; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.636647; -----AACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0
MA0091.1_rc_shift5 (TAL1::TCF3_rc)				; oligos_7nt_mkv4_m13 versus MA0091.1_rc (TAL1::TCF3_rc); m=31/36; ncol2=12; w=10; offset=1; strand=R; shift=5; score=0.620631; -----AmCAKMTGkTc ; cor=; Ncor= a 0 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 c 0 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 g 0 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 t 0 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0
MA0698.1_shift3 (ZBTB18)				; oligos_7nt_mkv4_m13 versus MA0698.1 (ZBTB18); m=32/36; ncol2=13; w=11; offset=-1; strand=D; shift=3; score=0.618535; ---hatCCAGATGTkb ; cor=; Ncor= a 0 0 0 3561.0 7064.0 1177.0 3618.0 21.0 13670.0 3.0 13670.0 14.0 3.0 48.0 210.0 1725.0 c 0 0 0 4188.0 753.0 1937.0 13670.0 13670.0 5.0 245.0 1048.0 15.0 1.0 314.0 177.0 4042.0 g 0 0 0 2499.0 2535.0 5212.0 1899.0 3.0 33.0 13670.0 278.0 94.0 13670.0 36.0 5530.0 3876.0 t 0 0 0 3423.0 3319.0 13670.0 60.0 8.0 206.0 6.0 297.0 13670.0 1.0 13670.0 8140.0 4027.0
MA0607.1_rc_shift6 (Bhlha15_rc)				; oligos_7nt_mkv4_m13 versus MA0607.1_rc (Bhlha15_rc); m=33/36; ncol2=8; w=8; offset=2; strand=R; shift=6; score=0.605756; ------aCATATGs-- ; cor=; Ncor= a 0 0 0 0 0 0 614.0 0.0 999.0 0.0 799.0 0.0 0.0 1.0 0 0 c 0 0 0 0 0 0 154.0 999.0 0.0 0.0 200.0 0.0 0.0 286.0 0 0 g 0 0 0 0 0 0 231.0 0.0 0.0 200.0 0.0 0.0 999.0 571.0 0 0 t 0 0 0 0 0 0 1.0 0.0 0.0 799.0 0.0 999.0 0.0 143.0 0 0
MA1485.1_rc_shift3 (FERD3L_rc)				; oligos_7nt_mkv4_m13 versus MA1485.1_rc (FERD3L_rc); m=34/36; ncol2=14; w=11; offset=-1; strand=R; shift=3; score=0.599037; ---GTrACAGCTGkyr ; cor=; Ncor= a 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 c 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 g 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 t 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0
MA1621.1_rc_shift3 (Rbpjl_rc)				; oligos_7nt_mkv4_m13 versus MA1621.1_rc (Rbpjl_rc); m=35/36; ncol2=14; w=11; offset=-1; strand=R; shift=3; score=0.591656; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0
MA0743.2_shift0 (SCRT1)				; oligos_7nt_mkv4_m13 versus MA0743.2 (SCRT1); m=36/36; ncol2=16; w=11; offset=-4; strand=D; shift=0; score=0.482575; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m8_shift2 (oligos_7nt_mkv4_m8oligos_7nt_mkv4_m8)				; oligos_7nt_mkv4_m8 (oligos_7nt_mkv4_m8oligos_7nt_mkv4_m8); m=0 (reference); ncol1=15; shift=2; ncol=17; --srCAACAGCTGTChc ; Alignment reference a 0 0 104 115 32 356 307 1 416 6 5 1 0 15 8 118 60 c 0 0 130 104 299 36 28 416 1 5 397 0 1 32 332 127 156 g 0 0 122 135 55 11 72 0 0 407 10 0 416 15 43 63 100 t 0 0 62 64 32 15 11 1 1 0 6 417 1 356 35 110 102
MA0832.1_rc_shift3 (Tcf21_rc)				; oligos_7nt_mkv4_m8 versus MA0832.1_rc (Tcf21_rc); m=1/29; ncol2=14; w=14; offset=1; strand=R; shift=3; score=0.833677; ---ryAACAGCTGTTry ; cor=; Ncor= a 0 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 c 0 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 g 0 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 t 0 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0
MA1485.1_shift3 (FERD3L)				; oligos_7nt_mkv4_m8 versus MA1485.1 (FERD3L); m=2/29; ncol2=14; w=14; offset=1; strand=D; shift=3; score=0.764439; ---GyrmCAGCTGTyAC ; cor=; Ncor= a 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 c 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 g 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 t 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0
MA1641.1_rc_shift4 (MYF5_rc)				; oligos_7nt_mkv4_m8 versus MA1641.1_rc (MYF5_rc); m=3/29; ncol2=12; w=12; offset=2; strand=R; shift=4; score=0.726187; ----gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0
MA1621.1_shift3 (Rbpjl)				; oligos_7nt_mkv4_m8 versus MA1621.1 (Rbpjl); m=4/29; ncol2=14; w=14; offset=1; strand=D; shift=3; score=0.715278; ---svmaCACCTGtsyc ; cor=; Ncor= a 0 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 c 0 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 g 0 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 t 0 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0
MA1619.1_shift4 (Ptf1a(var.2))				; oligos_7nt_mkv4_m8 versus MA1619.1 (Ptf1a(var.2)); m=5/29; ncol2=12; w=12; offset=2; strand=D; shift=4; score=0.712841; ----rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0
MA1618.1_rc_shift3 (Ptf1a_rc)				; oligos_7nt_mkv4_m8 versus MA1618.1_rc (Ptf1a_rc); m=6/29; ncol2=13; w=13; offset=1; strand=R; shift=3; score=0.683495; ---dmaaCATCTGtkh- ; cor=; Ncor= a 0 0 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 c 0 0 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 g 0 0 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 t 0 0 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0
MA0499.2_shift4 (MYOD1)				; oligos_7nt_mkv4_m8 versus MA0499.2 (MYOD1); m=7/29; ncol2=13; w=13; offset=2; strand=D; shift=4; score=0.681548; ----cwgCACCTGTymy ; cor=; Ncor= a 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 c 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 g 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 t 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0
MA0500.2_rc_shift4 (MYOG_rc)				; oligos_7nt_mkv4_m8 versus MA0500.2_rc (MYOG_rc); m=8/29; ncol2=12; w=12; offset=2; strand=R; shift=4; score=0.680893; ----sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0
MA1467.1_shift5 (ATOH1(var.2))				; oligos_7nt_mkv4_m8 versus MA1467.1 (ATOH1(var.2)); m=9/29; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.653753; -----AACAGCTGTY-- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0
MA0521.1_rc_shift4 (Tcf12_rc)				; oligos_7nt_mkv4_m8 versus MA0521.1_rc (Tcf12_rc); m=10/29; ncol2=11; w=11; offset=2; strand=R; shift=4; score=0.638016; ----cwsCAGCTGYy-- ; cor=; Ncor= a 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 c 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 g 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 t 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0
MA0665.1_rc_shift5 (MSC_rc)				; oligos_7nt_mkv4_m8 versus MA0665.1_rc (MSC_rc); m=11/29; ncol2=10; w=10; offset=3; strand=R; shift=5; score=0.617177; -----AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0
MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)				; oligos_7nt_mkv4_m8 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=12/29; ncol2=12; w=12; offset=2; strand=R; shift=4; score=0.610382; ----rmaCAGGTGtky- ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0
MA1472.1_shift5 (BHLHA15(var.2))				; oligos_7nt_mkv4_m8 versus MA1472.1 (BHLHA15(var.2)); m=13/29; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.602774; -----avCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0
MA0667.1_shift5 (MYF6)				; oligos_7nt_mkv4_m8 versus MA0667.1 (MYF6); m=14/29; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.602533; -----AACArCTGTY-- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 c 0 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 g 0 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 t 0 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0
MA0744.2_shift0 (SCRT2)				; oligos_7nt_mkv4_m8 versus MA0744.2 (SCRT2); m=15/29; ncol2=16; w=14; offset=-2; strand=D; shift=0; score=0.592201; rrwkCAACAGGTggtw- ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0 0
MA0743.2_shift0 (SCRT1)				; oligos_7nt_mkv4_m8 versus MA0743.2 (SCRT1); m=16/29; ncol2=16; w=14; offset=-2; strand=D; shift=0; score=0.590122; wawkCAACAGGTGgtw- ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0 0
MA0796.1_shift4 (TGIF1)				; oligos_7nt_mkv4_m8 versus MA0796.1 (TGIF1); m=17/29; ncol2=12; w=12; offset=2; strand=D; shift=4; score=0.589567; ----TGACAGCTGTCA- ; cor=; Ncor= a 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 c 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 g 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 t 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0
MA1571.1_rc_shift4 (TGIF2LX_rc)				; oligos_7nt_mkv4_m8 versus MA1571.1_rc (TGIF2LX_rc); m=18/29; ncol2=12; w=12; offset=2; strand=R; shift=4; score=0.587697; ----TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0
MA0691.1_shift5 (TFAP4)				; oligos_7nt_mkv4_m8 versus MA0691.1 (TFAP4); m=19/29; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.587653; -----AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0
MA0816.1_shift5 (Ascl2)				; oligos_7nt_mkv4_m8 versus MA0816.1 (Ascl2); m=20/29; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.581425; -----arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0
MA0091.1_rc_shift5 (TAL1::TCF3_rc)				; oligos_7nt_mkv4_m8 versus MA0091.1_rc (TAL1::TCF3_rc); m=21/29; ncol2=12; w=12; offset=3; strand=R; shift=5; score=0.578817; -----AmCAKMTGkTck ; cor=; Ncor= a 0 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 c 0 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 g 0 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 t 0 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0
MA1572.1_rc_shift4 (TGIF2LY_rc)				; oligos_7nt_mkv4_m8 versus MA1572.1_rc (TGIF2LY_rc); m=22/29; ncol2=12; w=12; offset=2; strand=R; shift=4; score=0.574603; ----TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0
MA0797.1_rc_shift4 (TGIF2_rc)				; oligos_7nt_mkv4_m8 versus MA0797.1_rc (TGIF2_rc); m=23/29; ncol2=12; w=12; offset=2; strand=R; shift=4; score=0.574157; ----TGACAsCTGTCA- ; cor=; Ncor= a 0 0 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 c 0 0 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 g 0 0 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 t 0 0 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0
MA1635.1_rc_shift5 (BHLHE22(var.2)_rc)				; oligos_7nt_mkv4_m8 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=24/29; ncol2=10; w=10; offset=3; strand=R; shift=5; score=0.556186; -----csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 c 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 g 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 t 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0
MA1100.2_shift5 (ASCL1)				; oligos_7nt_mkv4_m8 versus MA1100.2 (ASCL1); m=25/29; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.544856; -----rrCAGCTGcy-- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0
MA0820.1_shift5 (FIGLA)				; oligos_7nt_mkv4_m8 versus MA0820.1 (FIGLA); m=26/29; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.516791; -----wmCACCTGkw-- ; cor=; Ncor= a 0 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 c 0 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 g 0 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 t 0 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0
MA0048.2_shift5 (NHLH1)				; oligos_7nt_mkv4_m8 versus MA0048.2 (NHLH1); m=27/29; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.489168; -----cGCAGCTGCk-- ; cor=; Ncor= a 0 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 c 0 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 g 0 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 t 0 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0
MA0774.1_rc_shift9 (MEIS2_rc)				; oligos_7nt_mkv4_m8 versus MA0774.1_rc (MEIS2_rc); m=28/29; ncol2=8; w=8; offset=7; strand=R; shift=9; score=0.440254; ---------sCTGTCAa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 c 0 0 0 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 g 0 0 0 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 t 0 0 0 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0
MA0775.1_rc_shift9 (MEIS3_rc)				; oligos_7nt_mkv4_m8 versus MA0775.1_rc (MEIS3_rc); m=29/29; ncol2=8; w=8; offset=7; strand=R; shift=9; score=0.419943; ---------scTGTCAw ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 c 0 0 0 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 g 0 0 0 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 t 0 0 0 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0