Myogenin_Rep3_motifs50/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i Myogenin_Rep3_motifs50/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title Myogeni_Rep3_motifs50 -origin center -offset 0 -o Myogenin_Rep3_motifs50/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	Myogenin_Rep3_motifs50/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	Myogenin_Rep3_motifs50/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	536
	Sum of sequence lengths      	43082
	Min sequence length          	0
	Max sequence length          	751
	Average sequence length      	80
	Possible positions           	42546
 Oligonucleotide statistics:
	Total occurrences    	20342
 Position interval parameters:
	Position interval    	20
	Number of windows    	38
	Total positions      	42546
	Degrees of freedom   	37
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-19	[-379,-360]	-369.5	2	18
	2	-18	[-359,-340]	-349.5	2	40
	3	-17	[-339,-320]	-329.5	2	40
	4	-16	[-319,-300]	-309.5	2	40
	5	-15	[-299,-280]	-289.5	2	40
	6	-14	[-279,-260]	-269.5	2	40
	7	-13	[-259,-240]	-249.5	2	40
	8	-12	[-239,-220]	-229.5	4	51
	9	-11	[-219,-200]	-209.5	7	107
	10	-10	[-199,-180]	-189.5	8	150
	11	-9	[-179,-160]	-169.5	10	181
	12	-8	[-159,-140]	-149.5	14	234
	13	-7	[-139,-120]	-129.5	17	293
	14	-6	[-119,-100]	-109.5	20	358
	15	-5	[-99,-80]	-89.5	35	530
	16	-4	[-79,-60]	-69.5	73	1061
	17	-3	[-59,-40]	-49.5	160	2132
	18	-2	[-39,-20]	-29.5	486	5706
	19	-1	[-19,0]	-9.5	536	10720
	20	0	[1,20]	10.5	536	10627
	21	1	[21,40]	30.5	426	5091
	22	2	[41,60]	50.5	150	1968
	23	3	[61,80]	70.5	69	987
	24	4	[81,100]	90.5	34	500
	25	5	[101,120]	110.5	20	350
	26	6	[121,140]	130.5	16	289
	27	7	[141,160]	150.5	13	227
	28	8	[161,180]	170.5	10	177
	29	9	[181,200]	190.5	8	149
	30	10	[201,220]	210.5	7	100
	31	11	[221,240]	230.5	4	47
	32	12	[241,260]	250.5	2	40
	33	13	[261,280]	270.5	2	40
	34	14	[281,300]	290.5	2	40
	35	15	[301,320]	310.5	2	40
	36	16	[321,340]	330.5	2	40
	37	17	[341,360]	350.5	2	39
	38	18	[361,380]	370.5	1	14

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-369.5         	occurrences in window	1	[-379,-360]
	11	-349.5         	occurrences in window	2	[-359,-340]
	12	-329.5         	occurrences in window	3	[-339,-320]
	13	-309.5         	occurrences in window	4	[-319,-300]
	14	-289.5         	occurrences in window	5	[-299,-280]
	15	-269.5         	occurrences in window	6	[-279,-260]
	16	-249.5         	occurrences in window	7	[-259,-240]
	17	-229.5         	occurrences in window	8	[-239,-220]
	18	-209.5         	occurrences in window	9	[-219,-200]
	19	-189.5         	occurrences in window	10	[-199,-180]
	20	-169.5         	occurrences in window	11	[-179,-160]
	21	-149.5         	occurrences in window	12	[-159,-140]
	22	-129.5         	occurrences in window	13	[-139,-120]
	23	-109.5         	occurrences in window	14	[-119,-100]
	24	-89.5          	occurrences in window	15	[-99,-80]
	25	-69.5          	occurrences in window	16	[-79,-60]
	26	-49.5          	occurrences in window	17	[-59,-40]
	27	-29.5          	occurrences in window	18	[-39,-20]
	28	-9.5           	occurrences in window	19	[-19,0]
	29	10.5           	occurrences in window	20	[1,20]
	30	30.5           	occurrences in window	21	[21,40]
	31	50.5           	occurrences in window	22	[41,60]
	32	70.5           	occurrences in window	23	[61,80]
	33	90.5           	occurrences in window	24	[81,100]
	34	110.5          	occurrences in window	25	[101,120]
	35	130.5          	occurrences in window	26	[121,140]
	36	150.5          	occurrences in window	27	[141,160]
	37	170.5          	occurrences in window	28	[161,180]
	38	190.5          	occurrences in window	29	[181,200]
	39	210.5          	occurrences in window	30	[201,220]
	40	230.5          	occurrences in window	31	[221,240]
	41	250.5          	occurrences in window	32	[241,260]
	42	270.5          	occurrences in window	33	[261,280]
	43	290.5          	occurrences in window	34	[281,300]
	44	310.5          	occurrences in window	35	[301,320]
	45	330.5          	occurrences in window	36	[321,340]
	46	350.5          	occurrences in window	37	[341,360]
	47	370.5          	occurrences in window	38	[361,380]
seq id occ chi2 df Pval Eval sig rank -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5
tt tt 1385 100.8 37 8.0e-08 1.3e-06 5.90 1 0 0 0 0 0 0 0 1 0 2 5 2 1 5 18 17 62 176 339 409 241 58 25 11 3 0 1 1 4 4 0 0 0 0 0 0 0 0
ct ct 1587 96.2 37 3.6e-07 5.8e-06 5.24 2 0 0 0 0 0 0 0 2 1 1 3 0 1 3 10 32 75 252 454 436 206 68 19 10 2 4 2 4 0 1 0 0 0 0 0 0 1 0
cc cc 1340 88.8 37 3.8e-06 6.1e-05 4.22 3 0 0 0 0 0 0 0 0 0 0 0 2 3 1 4 41 60 224 400 363 140 61 21 4 3 4 1 6 2 0 0 0 0 0 0 0 0 0
gg gg 1425 85.0 37 1.2e-05 0.0002 3.71 4 0 0 0 0 0 0 0 0 0 2 3 0 1 3 5 25 83 209 406 393 197 53 27 8 3 3 1 1 2 0 0 0 0 0 0 0 0 0
gc gc 1369 80.5 37 4.6e-05 0.00073 3.14 5 0 0 0 0 0 0 0 0 0 0 1 1 2 2 7 25 67 200 404 403 167 50 19 5 6 3 4 2 1 0 0 0 0 0 0 0 0 0
tg tg 1682 78.1 37 9.3e-05 0.0015 2.83 6 0 0 0 0 0 0 0 0 0 0 2 1 2 4 11 37 89 245 461 490 206 68 33 10 6 6 2 2 4 2 0 0 0 0 0 0 1 0
ag ag 1611 75.5 37 1.9e-04 0.003 2.52 7 0 0 0 0 0 0 0 0 2 3 3 1 1 2 10 29 78 230 473 443 208 67 25 11 9 7 4 2 1 1 0 0 0 0 0 0 1 0
ca ca 1698 68.9 37 1.1e-03 0.018 1.75 8 0 0 0 0 0 0 0 0 3 3 3 4 4 2 12 38 91 246 459 475 229 68 26 9 5 6 8 1 2 2 0 0 0 0 0 0 2 0
aa aa 1413 50.8 37 6.5e-02 1 -0.02 9 0 0 0 0 0 0 0 1 1 0 4 3 4 9 18 37 81 201 428 331 180 62 26 11 1 6 1 1 4 2 0 0 0 0 0 0 1 0
gt gt 1106 47.5 37 1.2e-01 1.9 -0.27 10 0 0 0 0 0 0 0 0 1 2 2 1 0 1 11 29 52 153 303 326 133 50 16 7 6 3 0 2 5 3 0 0 0 0 0 0 0 0
tc tc 1221 46.0 37 1.5e-01 2.3 -0.37 11 0 0 0 0 0 0 0 1 1 2 3 2 2 5 9 25 59 185 330 330 169 59 17 9 2 2 3 3 1 2 0 0 0 0 0 0 0 0
ga ga 1204 41.8 37 2.7e-01 4.3 -0.63 12 0 0 0 0 0 0 0 0 1 1 3 1 2 5 6 17 64 178 342 307 162 54 30 11 4 8 4 1 2 0 0 0 0 0 0 0 1 0
ac ac 1079 36.5 37 4.9e-01 7.9 -0.90 13 0 0 0 0 0 0 0 1 3 3 1 2 2 1 11 23 69 156 294 286 138 44 19 7 1 6 3 3 3 1 0 0 0 0 0 0 2 0
ta ta 807 30.5 37 7.7e-01 12 -1.09 14 0 0 0 0 0 0 0 0 4 3 0 1 0 2 14 13 42 123 211 213 111 44 9 7 2 2 1 1 3 1 0 0 0 0 0 0 0 0
at at 1024 23.6 37 9.6e-01 15 -1.19 15 0 0 0 0 0 0 0 0 3 1 1 4 3 6 15 19 52 148 260 270 150 50 23 7 4 1 4 0 3 0 0 0 0 0 0 0 0 0
cg cg 391 4.3 37 1.0e+00 16 -1.20 16 0 0 0 0 0 0 0 0 0 0 0 0 1 2 4 8 24 52 113 106 45 19 9 1 1 1 1 2 2 0 0 0 0 0 0 0 0 0 
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 Job started	2020-04-13.202222
 Job done	2020-04-13.202223
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