One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m11/peak-motifs_dyads_m11.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m11/peak-motifs_dyads_m11_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m11_shift3 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m11_shift3 (dyads_m11dyads_m11)
; dyads_m11 (dyads_m11dyads_m11); m=0 (reference); ncol1=12; shift=3; ncol=15; ---ccCCCTGCCwct ; Alignment reference a 0 0 0 2 7 0 0 0 0 0 1 0 9 5 7 c 0 0 0 19 15 28 29 29 0 0 28 29 2 16 6 g 0 0 0 7 3 1 0 0 0 29 0 0 0 5 3 t 0 0 0 1 4 0 0 0 29 0 0 0 18 3 13

MA1653.1_shift2 (ZNF148)
; dyads_m11 versus MA1653.1 (ZNF148); m=1/7; ncol2=12; w=11; offset=-1; strand=D; shift=2; score=0.609695; --ysCCCCTCCCcc- ; cor=; Ncor= a 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0

MA1522.1_shift2 (MAZ)
; dyads_m11 versus MA1522.1 (MAZ); m=2/7; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.561423; --ssCCCCTCCcc-- ; cor=; Ncor= a 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 c 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 g 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 t 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0

MA1631.1_shift1 (ASCL1(var.2))
; dyads_m11 versus MA1631.1 (ASCL1(var.2)); m=3/7; ncol2=13; w=11; offset=-2; strand=D; shift=1; score=0.55444; -cdgCACCTGCysc- ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0

MA0155.1_rc_shift1 (INSM1_rc)
; dyads_m11 versus MA0155.1_rc (INSM1_rc); m=4/7; ncol2=12; w=10; offset=-2; strand=R; shift=1; score=0.543468; -ygmCCCCwkrCA-- ; cor=; Ncor= a 0 2.0 5.0 6.0 0.0 0.0 0.0 0.0 8.0 3.0 13.0 4.0 19.0 0 0 c 0 12.0 0.0 16.0 24.0 24.0 23.0 24.0 0.0 0.0 3.0 20.0 4.0 0 0 g 0 0.0 16.0 2.0 0.0 0.0 1.0 0.0 0.0 15.0 8.0 0.0 0.0 0 0 t 0 10.0 3.0 0.0 0.0 0.0 0.0 0.0 16.0 6.0 0.0 0.0 1.0 0 0

MA1102.2_rc_shift0 (CTCFL_rc)
; dyads_m11 versus MA1102.2_rc (CTCFL_rc); m=5/7; ncol2=12; w=9; offset=-3; strand=R; shift=0; score=0.495225; scGCCCCCTGsy--- ; cor=; Ncor= a 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 0 0 0 c 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 0 0 0 g 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 0 0 0 t 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0 0 0 0

MA0597.1_shift7 (THAP1)
; dyads_m11 versus MA0597.1 (THAP1); m=6/7; ncol2=9; w=8; offset=4; strand=D; shift=7; score=0.453762; -------ytGCCMky ; cor=; Ncor= a 0 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 c 0 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 g 0 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 t 0 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0

MA0057.1_rc_shift1 (MZF1(var.2)_rc)
; dyads_m11 versus MA0057.1_rc (MZF1(var.2)_rc); m=7/7; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.411094; -yymCCCMTmv---- ; cor=; Ncor= a 0 2.0 2.0 4.0 2.0 0.0 1.0 5.0 0.0 7.0 4.0 0 0 0 0 c 0 4.0 4.0 8.0 14.0 14.0 15.0 11.0 0.0 7.0 7.0 0 0 0 0 g 0 2.0 0.0 1.0 0.0 2.0 0.0 0.0 1.0 0.0 4.0 0 0 0 0 t 0 8.0 10.0 3.0 0.0 0.0 0.0 0.0 15.0 2.0 1.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m11_shift3 (dyads_m11dyads_m11)				; dyads_m11 (dyads_m11dyads_m11); m=0 (reference); ncol1=12; shift=3; ncol=15; ---ccCCCTGCCwct ; Alignment reference a 0 0 0 2 7 0 0 0 0 0 1 0 9 5 7 c 0 0 0 19 15 28 29 29 0 0 28 29 2 16 6 g 0 0 0 7 3 1 0 0 0 29 0 0 0 5 3 t 0 0 0 1 4 0 0 0 29 0 0 0 18 3 13
MA1653.1_shift2 (ZNF148)				; dyads_m11 versus MA1653.1 (ZNF148); m=1/7; ncol2=12; w=11; offset=-1; strand=D; shift=2; score=0.609695; --ysCCCCTCCCcc- ; cor=; Ncor= a 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0
MA1522.1_shift2 (MAZ)				; dyads_m11 versus MA1522.1 (MAZ); m=2/7; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.561423; --ssCCCCTCCcc-- ; cor=; Ncor= a 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 c 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 g 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 t 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0
MA1631.1_shift1 (ASCL1(var.2))				; dyads_m11 versus MA1631.1 (ASCL1(var.2)); m=3/7; ncol2=13; w=11; offset=-2; strand=D; shift=1; score=0.55444; -cdgCACCTGCysc- ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0
MA0155.1_rc_shift1 (INSM1_rc)				; dyads_m11 versus MA0155.1_rc (INSM1_rc); m=4/7; ncol2=12; w=10; offset=-2; strand=R; shift=1; score=0.543468; -ygmCCCCwkrCA-- ; cor=; Ncor= a 0 2.0 5.0 6.0 0.0 0.0 0.0 0.0 8.0 3.0 13.0 4.0 19.0 0 0 c 0 12.0 0.0 16.0 24.0 24.0 23.0 24.0 0.0 0.0 3.0 20.0 4.0 0 0 g 0 0.0 16.0 2.0 0.0 0.0 1.0 0.0 0.0 15.0 8.0 0.0 0.0 0 0 t 0 10.0 3.0 0.0 0.0 0.0 0.0 0.0 16.0 6.0 0.0 0.0 1.0 0 0
MA1102.2_rc_shift0 (CTCFL_rc)				; dyads_m11 versus MA1102.2_rc (CTCFL_rc); m=5/7; ncol2=12; w=9; offset=-3; strand=R; shift=0; score=0.495225; scGCCCCCTGsy--- ; cor=; Ncor= a 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 0 0 0 c 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 0 0 0 g 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 0 0 0 t 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0 0 0 0
MA0597.1_shift7 (THAP1)				; dyads_m11 versus MA0597.1 (THAP1); m=6/7; ncol2=9; w=8; offset=4; strand=D; shift=7; score=0.453762; -------ytGCCMky ; cor=; Ncor= a 0 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 c 0 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 g 0 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 t 0 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0
MA0057.1_rc_shift1 (MZF1(var.2)_rc)				; dyads_m11 versus MA0057.1_rc (MZF1(var.2)_rc); m=7/7; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.411094; -yymCCCMTmv---- ; cor=; Ncor= a 0 2.0 2.0 4.0 2.0 0.0 1.0 5.0 0.0 7.0 4.0 0 0 0 0 c 0 4.0 4.0 8.0 14.0 14.0 15.0 11.0 0.0 7.0 7.0 0 0 0 0 g 0 2.0 0.0 1.0 0.0 2.0 0.0 0.0 1.0 0.0 4.0 0 0 0 0 t 0 8.0 10.0 3.0 0.0 0.0 0.0 0.0 15.0 2.0 1.0 0 0 0 0