One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m12/peak-motifs_dyads_m12.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m12/peak-motifs_dyads_m12_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m12_shift2 ; 6 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
dyads_m12_shift2 (dyads_m12dyads_m12)     
; dyads_m12 (dyads_m12dyads_m12); m=0 (reference); ncol1=14; shift=2; ncol=16; --vssCCSCGCSGGss
; Alignment reference
a	0	0	3	0	1	1	0	0	0	0	0	0	0	1	1	1
c	0	0	3	5	6	9	9	8	11	0	10	8	1	2	3	6
g	0	0	3	4	4	1	2	3	0	11	1	3	10	8	7	4
t	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0
MA0751.1_shift1 (ZIC4) 
; dyads_m12 versus MA0751.1 (ZIC4); m=1/5; ncol2=15; w=14; offset=-1; strand=D; shift=1; score=0.683894; -krCCCCCyGykGyGh
; cor=; Ncor=
a	0	578.0	3013.0	315.0	209.0	614.0	8.0	114.0	24.0	1095.0	24.0	1052.0	258.0	704.0	74.0	1083.0
c	0	934.0	812.0	2870.0	2890.0	2757.0	2999.0	2985.0	2222.0	68.0	2279.0	865.0	18.0	1044.0	452.0	1224.0
g	0	4126.0	1553.0	52.0	121.0	225.0	0.0	0.0	6.0	4795.0	252.0	1903.0	5086.0	599.0	4522.0	363.0
t	0	1887.0	21.0	98.0	147.0	275.0	1.0	11.0	1078.0	69.0	1017.0	3488.0	67.0	1454.0	1156.0	916.0
MA0697.1_shift1 (ZIC3) 
; dyads_m12 versus MA0697.1 (ZIC3); m=2/5; ncol2=15; w=14; offset=-1; strand=D; shift=1; score=0.681908; -gACCCCCYGCtGyGh
; cor=; Ncor=
a	0	20.0	163.0	7.0	7.0	22.0	0.0	0.0	0.0	22.0	4.0	18.0	3.0	24.0	3.0	56.0
c	0	50.0	32.0	203.0	204.0	188.0	209.0	206.0	142.0	5.0	178.0	26.0	0.0	89.0	2.0	79.0
g	0	163.0	43.0	0.0	3.0	0.0	0.0	0.0	0.0	217.0	6.0	53.0	225.0	13.0	214.0	13.0
t	0	69.0	0.0	4.0	7.0	19.0	0.0	0.0	61.0	2.0	29.0	163.0	3.0	74.0	23.0	53.0
MA1584.1_shift0 (ZIC5) 
; dyads_m12 versus MA1584.1 (ZIC5); m=3/5; ncol2=16; w=14; offset=-2; strand=D; shift=0; score=0.645662; mgACCCCCCGCtGyGm
; cor=; Ncor=
a	6068.0	555.0	19266.0	250.0	147.0	1311.0	5.0	67.0	10.0	2110.0	2.0	2536.0	251.0	5255.0	52.0	8073.0
c	6877.0	3318.0	2320.0	21201.0	21163.0	20221.0	21263.0	21235.0	17685.0	21.0	19607.0	3844.0	8.0	9445.0	1733.0	11606.0
g	5212.0	17329.0	2765.0	0.0	58.0	470.0	0.0	2.0	0.0	20412.0	235.0	3252.0	21153.0	1725.0	19961.0	792.0
t	3106.0	5687.0	0.0	17.0	57.0	328.0	1.0	2.0	3577.0	23.0	5843.0	18007.0	2.0	10267.0	2756.0	5356.0
MA0696.1_shift1 (ZIC1) 
; dyads_m12 versus MA0696.1 (ZIC1); m=4/5; ncol2=14; w=13; offset=-1; strand=D; shift=1; score=0.617985; -gACCCCCyGCTGyG-
; cor=; Ncor=
a	0	1113.0	22722.0	836.0	1264.0	2606.0	0.0	185.0	22.0	2156.0	23.0	1215.0	73.0	3121.0	35.0	0
c	0	3934.0	2660.0	28949.0	29217.0	25527.0	29399.0	29532.0	18412.0	45.0	27426.0	1757.0	24.0	7693.0	520.0	0
g	0	25702.0	7408.0	58.0	204.0	327.0	4.0	10.0	0.0	31995.0	439.0	5531.0	34649.0	1690.0	34431.0	0
t	0	8960.0	23.0	125.0	281.0	927.0	7.0	14.0	10313.0	14.0	6735.0	27084.0	1.0	16190.0	2725.0	0
MA1513.1_shift4 (KLF15) 
; dyads_m12 versus MA1513.1 (KLF15); m=5/5; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.576117; ----scCCCGCCCcs-
; cor=; Ncor=
a	0	0	0	0	1184.0	937.0	40.0	93.0	0.0	0.0	11.0	55.0	12.0	1566.0	1067.0	0
c	0	0	0	0	2903.0	6506.0	11234.0	10940.0	11368.0	0.0	11345.0	10954.0	11254.0	6267.0	5013.0	0
g	0	0	0	0	5538.0	2117.0	86.0	333.0	1.0	11369.0	2.0	359.0	100.0	1934.0	3124.0	0
t	0	0	0	0	1744.0	1809.0	9.0	3.0	0.0	0.0	11.0	1.0	3.0	1602.0	2165.0	0