Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16.tf
 Output files
	alignments_1ton	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16.tf
		file1	1	12	28
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m16 MA0621.1 dyads_m16dyads_m16 mix-a 0.862 0.790 12 11 11 12 0.9167 0.9167 1.0000 R 1
dyads_m16 MA0703.2 dyads_m16dyads_m16 LMX1B 0.961 0.739 12 11 10 13 0.7692 0.8333 0.9091 D -1
dyads_m16 MA0135.1 dyads_m16dyads_m16 Lhx3 0.778 0.718 12 13 12 13 0.9231 1.0000 0.9231 R 0
dyads_m16 MA1463.1 dyads_m16dyads_m16 ARGFX 0.838 0.699 12 10 10 12 0.8333 0.8333 1.0000 R 1
dyads_m16 MA0707.1 dyads_m16dyads_m16 MNX1 0.835 0.695 12 10 10 12 0.8333 0.8333 1.0000 D 1
dyads_m16 MA0628.1 dyads_m16dyads_m16 POU6F1 0.824 0.686 12 10 10 12 0.8333 0.8333 1.0000 D 1
dyads_m16 MA0662.1 dyads_m16dyads_m16 MIXL1 0.809 0.674 12 10 10 12 0.8333 0.8333 1.0000 D 1
dyads_m16 MA0634.1 dyads_m16dyads_m16 ALX3 0.804 0.670 12 10 10 12 0.8333 0.8333 1.0000 D 1
dyads_m16 MA0601.1 dyads_m16dyads_m16 Arid3b 0.847 0.652 12 11 10 13 0.7692 0.8333 0.9091 D -1
dyads_m16 MA0718.1 dyads_m16dyads_m16 RAX 0.778 0.648 12 10 10 12 0.8333 0.8333 1.0000 R 1
dyads_m16 MA0892.1 dyads_m16dyads_m16 GSX1 0.777 0.648 12 10 10 12 0.8333 0.8333 1.0000 R 1
dyads_m16 MA0710.1 dyads_m16dyads_m16 NOTO 0.773 0.644 12 10 10 12 0.8333 0.8333 1.0000 D 1
dyads_m16 MA0886.1 dyads_m16dyads_m16 EMX2 0.772 0.644 12 10 10 12 0.8333 0.8333 1.0000 D 1
dyads_m16 MA0658.1 dyads_m16dyads_m16 LHX6 0.769 0.641 12 10 10 12 0.8333 0.8333 1.0000 R 1
dyads_m16 MA0706.1 dyads_m16dyads_m16 MEOX2 0.769 0.641 12 10 10 12 0.8333 0.8333 1.0000 D 1
dyads_m16 MA0644.1 dyads_m16dyads_m16 ESX1 0.756 0.630 12 10 10 12 0.8333 0.8333 1.0000 D 1
dyads_m16 MA0894.1 dyads_m16dyads_m16 HESX1 0.753 0.628 12 10 10 12 0.8333 0.8333 1.0000 D 1
dyads_m16 MA0903.1 dyads_m16dyads_m16 HOXB3 0.752 0.626 12 10 10 12 0.8333 0.8333 1.0000 D 1
dyads_m16 MA0853.1 dyads_m16dyads_m16 Alx4 0.886 0.625 12 17 12 17 0.7059 1.0000 0.7059 R -3
dyads_m16 MA0699.1 dyads_m16dyads_m16 LBX2 0.741 0.618 12 10 10 12 0.8333 0.8333 1.0000 D 1
dyads_m16 MA0661.1 dyads_m16dyads_m16 MEOX1 0.739 0.616 12 10 10 12 0.8333 0.8333 1.0000 R 1
dyads_m16 MA0702.2 dyads_m16dyads_m16 LMX1A 0.920 0.613 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA0879.1 dyads_m16dyads_m16 Dlx1 0.728 0.607 12 10 10 12 0.8333 0.8333 1.0000 R 1
dyads_m16 MA0854.1 dyads_m16dyads_m16 Alx1 0.850 0.600 12 17 12 17 0.7059 1.0000 0.7059 R -3
dyads_m16 MA1497.1 dyads_m16dyads_m16 HOXA6 0.718 0.598 12 10 10 12 0.8333 0.8333 1.0000 D 1
dyads_m16 MA0890.1 dyads_m16dyads_m16 GBX2 0.717 0.598 12 10 10 12 0.8333 0.8333 1.0000 D 1
dyads_m16 MA0704.1 dyads_m16dyads_m16 Lhx4 0.887 0.591 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA1501.1 dyads_m16dyads_m16 HOXB7 0.700 0.583 12 10 10 12 0.8333 0.8333 1.0000 D 1
dyads_m16 MA0888.1 dyads_m16dyads_m16 EVX2 0.700 0.583 12 10 10 12 0.8333 0.8333 1.0000 D 1
dyads_m16 MA0874.1 dyads_m16dyads_m16 Arx 0.823 0.581 12 17 12 17 0.7059 1.0000 0.7059 D -3
dyads_m16 MA0674.1 dyads_m16dyads_m16 NKX6-1 0.854 0.569 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA0721.1 dyads_m16dyads_m16 UNCX 0.826 0.551 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA0722.1 dyads_m16dyads_m16 VAX1 0.819 0.546 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA1519.1 dyads_m16dyads_m16 LHX5 0.814 0.543 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA0723.1 dyads_m16dyads_m16 VAX2 0.812 0.541 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA0716.1 dyads_m16dyads_m16 PRRX1 0.812 0.541 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA0675.1 dyads_m16dyads_m16 NKX6-2 0.811 0.541 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA0654.1 dyads_m16dyads_m16 ISX 0.800 0.534 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA0630.1 dyads_m16dyads_m16 SHOX 0.800 0.533 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA0075.3 dyads_m16dyads_m16 PRRX2 0.797 0.531 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA0720.1 dyads_m16dyads_m16 Shox2 0.796 0.530 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA1481.1 dyads_m16dyads_m16 DRGX 0.795 0.530 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA0725.1 dyads_m16dyads_m16 VSX1 0.795 0.530 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA0726.1 dyads_m16dyads_m16 VSX2 0.790 0.527 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA0717.1 dyads_m16dyads_m16 RAX2 0.790 0.526 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA1577.1 dyads_m16dyads_m16 TLX2 0.789 0.526 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA0701.2 dyads_m16dyads_m16 LHX9 0.780 0.520 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA0612.2 dyads_m16dyads_m16 EMX1 0.779 0.520 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA0900.2 dyads_m16dyads_m16 HOXA2 0.777 0.518 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA0132.2 dyads_m16dyads_m16 PDX1 0.776 0.518 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA0715.1 dyads_m16dyads_m16 PROP1 0.801 0.515 12 11 9 14 0.6429 0.7500 0.8182 R 3
dyads_m16 MA1505.1 dyads_m16dyads_m16 HOXC8 0.771 0.514 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA1495.1 dyads_m16dyads_m16 HOXA1 0.765 0.510 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA0027.2 dyads_m16dyads_m16 EN1 0.755 0.504 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA0885.1 dyads_m16dyads_m16 Dlx2 0.755 0.503 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA0618.1 dyads_m16dyads_m16 LBX1 0.754 0.502 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA1504.1 dyads_m16dyads_m16 HOXC4 0.753 0.502 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA1507.1 dyads_m16dyads_m16 HOXD4 0.752 0.501 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA1499.1 dyads_m16dyads_m16 HOXB4 0.749 0.499 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA0882.1 dyads_m16dyads_m16 DLX6 0.748 0.499 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA0705.1 dyads_m16dyads_m16 Lhx8 0.748 0.499 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA0713.1 dyads_m16dyads_m16 PHOX2A 0.772 0.496 12 11 9 14 0.6429 0.7500 0.8182 D -2
dyads_m16 MA0068.2 dyads_m16dyads_m16 PAX4 0.744 0.496 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA0880.1 dyads_m16dyads_m16 Dlx3 0.743 0.495 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA0902.2 dyads_m16dyads_m16 HOXB2 0.734 0.489 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA0881.1 dyads_m16dyads_m16 Dlx4 0.733 0.489 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA0125.1 dyads_m16dyads_m16 Nobox 0.733 0.489 12 8 8 12 0.6667 0.6667 1.0000 R 1
dyads_m16 MA0904.2 dyads_m16dyads_m16 HOXB5 0.729 0.486 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA0912.2 dyads_m16dyads_m16 HOXD3 0.729 0.486 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA0158.2 dyads_m16dyads_m16 HOXA5 0.722 0.481 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA1500.1 dyads_m16dyads_m16 HOXB6 0.721 0.480 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA1476.1 dyads_m16dyads_m16 DLX5 0.718 0.479 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA0709.1 dyads_m16dyads_m16 Msx3 0.717 0.478 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA0151.1 dyads_m16dyads_m16 Arid3a 0.951 0.475 12 6 6 12 0.5000 0.5000 1.0000 D 5
dyads_m16 MA0666.1 dyads_m16dyads_m16 MSX1 0.703 0.469 12 8 8 12 0.6667 0.6667 1.0000 R 2
dyads_m16 MA0893.2 dyads_m16dyads_m16 GSX2 0.702 0.468 12 8 8 12 0.6667 0.6667 1.0000 D 2
dyads_m16 MA0681.2 dyads_m16dyads_m16 PHOX2B 0.720 0.466 12 16 11 17 0.6471 0.9167 0.6875 D 1 
 Host name	pedagogix
 Job started	2020-04-13.204928
 Job done	2020-04-13.205038
 Seconds	8.96
	user	8.96
	system	1.4
	cuser	54.38
;	csystem	4.03