One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m16/peak-motifs_dyads_m16_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m16_shift3 ; 78 matrices ; sort_field=Ncor

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m16_shift3 (dyads_m16dyads_m16)				; dyads_m16 (dyads_m16dyads_m16); m=0 (reference); ncol1=12; shift=3; ncol=17; ---ttTTAATTAAaa-- ; Alignment reference a 0 0 0 6 6 0 1 24 23 3 1 27 26 14 12 0 0 c 0 0 0 4 4 0 0 3 1 1 0 0 2 4 6 0 0 g 0 0 0 6 4 2 0 0 1 1 3 0 0 4 4 0 0 t 0 0 0 12 14 26 27 1 3 23 24 1 0 6 6 0 0
MA0621.1_rc_shift4 (mix-a_rc)				; dyads_m16 versus MA0621.1_rc (mix-a_rc); m=1/77; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.790258; ----mcTAATTAayt-- ; cor=; Ncor= a 0 0 0 0 301.0 184.0 21.0 1000.0 1000.0 0.0 0.0 1000.0 679.0 244.0 229.0 0 0 c 0 0 0 0 290.0 488.0 21.0 0.0 0.0 0.0 0.0 0.0 46.0 261.0 229.0 0 0 g 0 0 0 0 205.0 100.0 21.0 0.0 0.0 0.0 0.0 0.0 146.0 150.0 229.0 0 0 t 0 0 0 0 205.0 228.0 938.0 0.0 0.0 1000.0 1000.0 0.0 130.0 345.0 312.0 0 0
MA0703.2_shift2 (LMX1B)				; dyads_m16 versus MA0703.2 (LMX1B); m=2/77; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.739137; --awtTTAATTAa---- ; cor=; Ncor= a 0 0 1894.0 2005.0 1109.0 0.0 0.0 4064.0 4064.0 0.0 0.0 4064.0 2319.0 0 0 0 0 c 0 0 617.0 680.0 548.0 599.0 0.0 0.0 0.0 0.0 0.0 12.0 785.0 0 0 0 0 g 0 0 890.0 756.0 936.0 190.0 0.0 0.0 0.0 0.0 0.0 0.0 350.0 0 0 0 0 t 0 0 663.0 2058.0 2955.0 3465.0 4064.0 0.0 0.0 4064.0 4064.0 0.0 609.0 0 0 0 0
MA0135.1_rc_shift3 (Lhx3_rc)				; dyads_m16 versus MA0135.1_rc (Lhx3_rc); m=3/77; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.717837; ---rrwTAATTAATTw- ; cor=; Ncor= a 0 0 0 6.0 10.0 8.0 3.0 19.0 16.0 0.0 1.0 20.0 20.0 1.0 0.0 8.0 0 c 0 0 0 3.0 0.0 3.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 3.0 0 g 0 0 0 9.0 8.0 0.0 1.0 1.0 2.0 0.0 0.0 0.0 0.0 0.0 2.0 0.0 0 t 0 0 0 2.0 2.0 9.0 16.0 0.0 2.0 20.0 19.0 0.0 0.0 19.0 16.0 9.0 0
MA1463.1_rc_shift4 (ARGFX_rc)				; dyads_m16 versus MA1463.1_rc (ARGFX_rc); m=4/77; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.698641; ----tyTAATTAgm--- ; cor=; Ncor= a 0 0 0 0 3158.0 900.0 1048.0 16589.0 16589.0 0.0 4.0 16589.0 4423.0 6479.0 0 0 0 c 0 0 0 0 2351.0 6249.0 1492.0 0.0 0.0 0.0 0.0 96.0 1748.0 4467.0 0 0 0 g 0 0 0 0 4098.0 563.0 499.0 44.0 0.0 0.0 46.0 1130.0 16589.0 1750.0 0 0 0 t 0 0 0 0 6983.0 10340.0 16589.0 0.0 0.0 16589.0 16589.0 270.0 2558.0 3893.0 0 0 0
MA0707.1_shift4 (MNX1)				; dyads_m16 versus MA0707.1 (MNX1); m=5/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.69543; ----dsyAATTAaa--- ; cor=; Ncor= a 0 0 0 0 213.0 127.0 1.0 610.0 610.0 8.0 140.0 610.0 319.0 264.0 0 0 0 c 0 0 0 0 25.0 167.0 217.0 121.0 36.0 43.0 21.0 0.0 54.0 123.0 0 0 0 g 0 0 0 0 214.0 191.0 7.0 0.0 0.0 0.0 65.0 0.0 112.0 109.0 0 0 0 t 0 0 0 0 158.0 125.0 393.0 56.0 0.0 610.0 610.0 0.0 124.0 115.0 0 0 0
MA0628.1_shift4 (POU6F1)				; dyads_m16 versus MA0628.1 (POU6F1); m=6/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.686368; ----ayTAATTArt--- ; cor=; Ncor= a 0 0 0 0 507.0 151.0 32.0 905.0 938.0 14.0 18.0 950.0 353.0 89.0 0 0 0 c 0 0 0 0 193.0 351.0 10.0 70.0 34.0 14.0 8.0 8.0 145.0 211.0 0 0 0 g 0 0 0 0 211.0 145.0 8.0 8.0 14.0 34.0 70.0 10.0 351.0 193.0 0 0 0 t 0 0 0 0 89.0 353.0 950.0 18.0 14.0 938.0 905.0 32.0 151.0 507.0 0 0 0
MA0662.1_shift4 (MIXL1)				; dyads_m16 versus MA0662.1 (MIXL1); m=7/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.674195; ----wyyAATTArm--- ; cor=; Ncor= a 0 0 0 0 6774.0 3981.0 2635.0 27042.0 27042.0 0.0 1385.0 27042.0 9688.0 8054.0 0 0 0 c 0 0 0 0 6037.0 9030.0 11639.0 1911.0 662.0 510.0 4270.0 1903.0 4894.0 8462.0 0 0 0 g 0 0 0 0 6646.0 5461.0 1245.0 3660.0 556.0 181.0 2031.0 115.0 8529.0 6129.0 0 0 0 t 0 0 0 0 7585.0 8570.0 15403.0 1038.0 736.0 27042.0 27042.0 2895.0 3931.0 4397.0 0 0 0
MA0634.1_shift4 (ALX3)				; dyads_m16 versus MA0634.1 (ALX3); m=8/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.669772; ----yyyAATTArm--- ; cor=; Ncor= a 0 0 0 0 1251.0 987.0 794.0 7877.0 7877.0 76.0 697.0 7877.0 2597.0 2759.0 0 0 0 c 0 0 0 0 2174.0 3402.0 3367.0 506.0 317.0 72.0 729.0 449.0 1671.0 2446.0 0 0 0 g 0 0 0 0 1062.0 1150.0 345.0 885.0 141.0 8.0 239.0 87.0 2205.0 1503.0 0 0 0 t 0 0 0 0 3390.0 2337.0 4510.0 629.0 231.0 7877.0 7877.0 977.0 1403.0 1168.0 0 0 0
MA0601.1_shift2 (Arid3b)				; dyads_m16 versus MA0601.1 (Arid3b); m=9/77; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.651783; --awaTTAATwaa---- ; cor=; Ncor= a 0 0 468.0 273.0 609.0 104.0 0.0 1000.0 911.0 89.0 262.0 490.0 351.0 0 0 0 0 c 0 0 177.0 80.0 119.0 0.0 0.0 0.0 0.0 0.0 168.0 170.0 216.0 0 0 0 0 g 0 0 177.0 80.0 34.0 0.0 0.0 0.0 0.0 0.0 73.0 170.0 216.0 0 0 0 0 t 0 0 177.0 566.0 238.0 895.0 1000.0 0.0 89.0 911.0 498.0 170.0 216.0 0 0 0 0
MA0718.1_rc_shift4 (RAX_rc)				; dyads_m16 versus MA0718.1_rc (RAX_rc); m=10/77; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.647953; ----ryTAATTrry--- ; cor=; Ncor= a 0 0 0 0 652.0 375.0 126.0 2412.0 2412.0 24.0 40.0 1131.0 693.0 347.0 0 0 0 c 0 0 0 0 383.0 701.0 20.0 49.0 0.0 12.0 3.0 25.0 419.0 921.0 0 0 0 g 0 0 0 0 838.0 284.0 0.0 71.0 0.0 38.0 17.0 1281.0 961.0 370.0 0 0 0 t 0 0 0 0 539.0 1051.0 2412.0 71.0 123.0 2412.0 2412.0 214.0 339.0 775.0 0 0 0
MA0892.1_rc_shift4 (GSX1_rc)				; dyads_m16 versus MA0892.1_rc (GSX1_rc); m=11/77; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.647655; ----dyTAATkrgk--- ; cor=; Ncor= a 0 0 0 0 315.0 173.0 103.0 1183.0 1183.0 50.0 177.0 733.0 226.0 252.0 0 0 0 c 0 0 0 0 214.0 313.0 9.0 0.0 3.0 123.0 60.0 48.0 258.0 209.0 0 0 0 g 0 0 0 0 305.0 249.0 0.0 106.0 79.0 106.0 402.0 450.0 535.0 391.0 0 0 0 t 0 0 0 0 350.0 448.0 1183.0 106.0 90.0 1183.0 781.0 124.0 164.0 331.0 0 0 0
MA0710.1_shift4 (NOTO)				; dyads_m16 versus MA0710.1 (NOTO); m=12/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.643977; ----vytMATTArs--- ; cor=; Ncor= a 0 0 0 0 5631.0 774.0 7097.0 15096.0 21405.0 0.0 374.0 21405.0 7038.0 4078.0 0 0 0 c 0 0 0 0 5682.0 13986.0 4001.0 6310.0 0.0 0.0 62.0 0.0 3856.0 7711.0 0 0 0 g 0 0 0 0 6529.0 617.0 573.0 0.0 0.0 0.0 422.0 2057.0 7679.0 5493.0 0 0 0 t 0 0 0 0 3563.0 7419.0 21405.0 139.0 0.0 21405.0 21405.0 1904.0 2832.0 4124.0 0 0 0
MA0886.1_shift4 (EMX2)				; dyads_m16 versus MA0886.1 (EMX2); m=13/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.643573; ----rsTAATTAgs--- ; cor=; Ncor= a 0 0 0 0 10479.0 5704.0 834.0 37262.0 37262.0 0.0 0.0 37262.0 9139.0 5970.0 0 0 0 c 0 0 0 0 8412.0 13337.0 7761.0 4938.0 0.0 0.0 0.0 0.0 7124.0 13054.0 0 0 0 g 0 0 0 0 12802.0 10582.0 0.0 678.0 0.0 0.0 4025.0 0.0 17672.0 10195.0 0 0 0 t 0 0 0 0 5569.0 7639.0 29501.0 1236.0 0.0 37262.0 37262.0 0.0 3328.0 8043.0 0 0 0
MA0658.1_rc_shift4 (LHX6_rc)				; dyads_m16 versus MA0658.1_rc (LHX6_rc); m=14/77; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.641036; ----ryTAATTAgy--- ; cor=; Ncor= a 0 0 0 0 1507.0 194.0 2.0 4438.0 4438.0 0.0 0.0 4438.0 1422.0 264.0 0 0 0 c 0 0 0 0 728.0 2769.0 243.0 108.0 15.0 0.0 487.0 28.0 791.0 1548.0 0 0 0 g 0 0 0 0 1654.0 637.0 0.0 766.0 98.0 14.0 90.0 253.0 3015.0 769.0 0 0 0 t 0 0 0 0 548.0 1668.0 4438.0 0.0 0.0 4438.0 4438.0 0.0 529.0 1857.0 0 0 0
MA0706.1_shift4 (MEOX2)				; dyads_m16 versus MA0706.1 (MEOX2); m=15/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.640913; ----rsTaATtAwc--- ; cor=; Ncor= a 0 0 0 0 8099.0 3262.0 1469.0 23930.0 23930.0 76.0 1152.0 23930.0 9634.0 5918.0 0 0 0 c 0 0 0 0 3821.0 8942.0 5055.0 8988.0 788.0 38.0 6039.0 359.0 3380.0 7195.0 0 0 0 g 0 0 0 0 6833.0 14987.0 642.0 3016.0 272.0 169.0 4974.0 4099.0 4086.0 5708.0 0 0 0 t 0 0 0 0 5176.0 2754.0 23930.0 900.0 492.0 23930.0 23930.0 1032.0 6830.0 5108.0 0 0 0
MA0644.1_shift4 (ESX1)				; dyads_m16 versus MA0644.1 (ESX1); m=16/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.629797; ----rcyAATTArc--- ; cor=; Ncor= a 0 0 0 0 10665.0 6473.0 2884.0 35623.0 35623.0 756.0 3721.0 35623.0 12065.0 7586.0 0 0 0 c 0 0 0 0 8153.0 15223.0 17981.0 3018.0 2440.0 995.0 4545.0 477.0 7659.0 14583.0 0 0 0 g 0 0 0 0 9485.0 5362.0 472.0 3416.0 867.0 4.0 1274.0 449.0 10210.0 6231.0 0 0 0 t 0 0 0 0 7321.0 8564.0 17642.0 2400.0 1089.0 35623.0 35623.0 2501.0 5689.0 7223.0 0 0 0
MA0894.1_shift4 (HESX1)				; dyads_m16 versus MA0894.1 (HESX1); m=17/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.627807; ----gyTAATTrry--- ; cor=; Ncor= a 0 0 0 0 831.0 879.0 187.0 4072.0 4072.0 0.0 0.0 1892.0 1245.0 801.0 0 0 0 c 0 0 0 0 753.0 1432.0 0.0 0.0 7.0 0.0 15.0 38.0 772.0 1601.0 0 0 0 g 0 0 0 0 1743.0 447.0 34.0 53.0 9.0 15.0 0.0 2180.0 1681.0 461.0 0 0 0 t 0 0 0 0 744.0 1313.0 4072.0 31.0 0.0 4072.0 4072.0 97.0 373.0 1209.0 0 0 0
MA0903.1_shift4 (HOXB3)				; dyads_m16 versus MA0903.1 (HOXB3); m=18/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.626266; ----asymATTArc--- ; cor=; Ncor= a 0 0 0 0 4500.0 2554.0 1744.0 7793.0 12899.0 0.0 441.0 12899.0 4542.0 3199.0 0 0 0 c 0 0 0 0 2526.0 4145.0 4979.0 5106.0 545.0 150.0 839.0 119.0 2119.0 3995.0 0 0 0 g 0 0 0 0 3151.0 4005.0 604.0 838.0 640.0 0.0 0.0 0.0 4732.0 2981.0 0 0 0 t 0 0 0 0 2722.0 2194.0 7920.0 697.0 242.0 12899.0 12899.0 574.0 1506.0 2724.0 0 0 0
MA0853.1_rc_shift0 (Alx4_rc)				; dyads_m16 versus MA0853.1_rc (Alx4_rc); m=19/77; ncol2=17; w=12; offset=-3; strand=R; shift=0; score=0.625421; gstdayTAATTArygcg ; cor=; Ncor= a 24.0 23.0 22.0 30.0 42.0 2.0 1.0 99.0 98.0 1.0 0.0 92.0 62.0 16.0 21.0 10.0 11.0 c 21.0 25.0 19.0 13.0 18.0 34.0 8.0 1.0 0.0 1.0 1.0 0.0 1.0 29.0 16.0 56.0 15.0 g 43.0 29.0 23.0 28.0 23.0 1.0 0.0 1.0 1.0 0.0 1.0 8.0 34.0 15.0 44.0 24.0 59.0 t 12.0 23.0 36.0 29.0 17.0 62.0 92.0 0.0 1.0 98.0 99.0 1.0 2.0 40.0 19.0 10.0 16.0
MA0699.1_shift4 (LBX2)				; dyads_m16 versus MA0699.1 (LBX2); m=20/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.617835; ----rcyAATTArc--- ; cor=; Ncor= a 0 0 0 0 809.0 366.0 157.0 2996.0 2996.0 0.0 150.0 2996.0 990.0 722.0 0 0 0 c 0 0 0 0 739.0 1437.0 1634.0 338.0 290.0 29.0 258.0 34.0 434.0 977.0 0 0 0 g 0 0 0 0 832.0 477.0 109.0 325.0 130.0 118.0 293.0 106.0 1135.0 737.0 0 0 0 t 0 0 0 0 616.0 715.0 1362.0 57.0 89.0 2996.0 2996.0 148.0 438.0 560.0 0 0 0
MA0661.1_rc_shift4 (MEOX1_rc)				; dyads_m16 versus MA0661.1_rc (MEOX1_rc); m=21/77; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.615643; ----gkTAATTAsy--- ; cor=; Ncor= a 0 0 0 0 506.0 683.0 6.0 3000.0 3000.0 3.0 39.0 3000.0 115.0 405.0 0 0 0 c 0 0 0 0 614.0 449.0 338.0 328.0 0.0 2.0 151.0 53.0 1363.0 986.0 0 0 0 g 0 0 0 0 1309.0 911.0 0.0 242.0 29.0 0.0 848.0 406.0 1637.0 704.0 0 0 0 t 0 0 0 0 572.0 956.0 3000.0 14.0 8.0 3000.0 3000.0 64.0 150.0 906.0 0 0 0
MA0702.2_rc_shift5 (LMX1A_rc)				; dyads_m16 versus MA0702.2_rc (LMX1A_rc); m=22/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.613433; -----kTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 827.0 0.0 7355.0 7355.0 0.0 0.0 7355.0 5133.0 0 0 0 0 c 0 0 0 0 0 1158.0 501.0 0.0 0.0 0.0 0.0 19.0 305.0 0 0 0 0 g 0 0 0 0 0 2558.0 102.0 0.0 50.0 9.0 0.0 31.0 2222.0 0 0 0 0 t 0 0 0 0 0 2812.0 7355.0 0.0 0.0 7355.0 7355.0 0.0 90.0 0 0 0 0
MA0879.1_rc_shift4 (Dlx1_rc)				; dyads_m16 versus MA0879.1_rc (Dlx1_rc); m=23/77; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.606823; ----gmTAATTrkk--- ; cor=; Ncor= a 0 0 0 0 1648.0 2536.0 1910.0 8281.0 8281.0 535.0 347.0 5528.0 1311.0 1519.0 0 0 0 c 0 0 0 0 1893.0 2077.0 36.0 511.0 49.0 42.0 416.0 149.0 1592.0 1814.0 0 0 0 g 0 0 0 0 3126.0 1894.0 103.0 359.0 41.0 105.0 861.0 2753.0 2795.0 2825.0 0 0 0 t 0 0 0 0 1613.0 1774.0 8281.0 157.0 1002.0 8281.0 8281.0 2295.0 2584.0 2123.0 0 0 0
MA0854.1_rc_shift0 (Alx1_rc)				; dyads_m16 versus MA0854.1_rc (Alx1_rc); m=24/77; ncol2=17; w=12; offset=-3; strand=R; shift=0; score=0.600258; rgkrayTAATTArykcg ; cor=; Ncor= a 31.0 24.0 17.0 29.0 53.0 5.0 1.0 98.0 98.0 1.0 0.0 92.0 53.0 17.0 15.0 7.0 20.0 c 14.0 23.0 12.0 16.0 11.0 40.0 7.0 0.0 0.0 1.0 1.0 0.0 2.0 31.0 14.0 65.0 17.0 g 40.0 29.0 31.0 32.0 21.0 2.0 0.0 1.0 1.0 0.0 0.0 7.0 40.0 9.0 33.0 21.0 44.0 t 15.0 24.0 39.0 23.0 15.0 53.0 92.0 0.0 1.0 98.0 98.0 1.0 5.0 43.0 38.0 7.0 19.0
MA1497.1_shift4 (HOXA6)				; dyads_m16 versus MA1497.1 (HOXA6); m=25/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.598306; ----ggymATTAas--- ; cor=; Ncor= a 0 0 0 0 1275.0 1337.0 87.0 7201.0 7201.0 0.0 1911.0 7201.0 2700.0 1234.0 0 0 0 c 0 0 0 0 1595.0 1725.0 2967.0 3768.0 745.0 0.0 233.0 94.0 1377.0 2457.0 0 0 0 g 0 0 0 0 2728.0 7201.0 100.0 833.0 908.0 0.0 553.0 502.0 1632.0 2020.0 0 0 0 t 0 0 0 0 1603.0 1605.0 4234.0 1482.0 11.0 7201.0 7201.0 663.0 1492.0 1489.0 0 0 0
MA0890.1_shift4 (GBX2)				; dyads_m16 versus MA0890.1 (GBX2); m=26/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.597844; ----rsyAATTArs--- ; cor=; Ncor= a 0 0 0 0 10334.0 3761.0 699.0 27366.0 27366.0 0.0 318.0 27366.0 8236.0 5389.0 0 0 0 c 0 0 0 0 5147.0 10517.0 15511.0 570.0 250.0 61.0 570.0 73.0 4502.0 9159.0 0 0 0 g 0 0 0 0 8145.0 8429.0 106.0 1113.0 114.0 65.0 673.0 30.0 10638.0 7075.0 0 0 0 t 0 0 0 0 3740.0 4658.0 11855.0 227.0 25.0 27366.0 27366.0 650.0 3991.0 5743.0 0 0 0
MA0704.1_shift5 (Lhx4)				; dyads_m16 versus MA0704.1 (Lhx4); m=27/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.591143; -----yTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 422.0 217.0 2896.0 2896.0 0.0 0.0 2896.0 1314.0 0 0 0 0 c 0 0 0 0 0 817.0 912.0 428.0 0.0 0.0 446.0 39.0 449.0 0 0 0 0 g 0 0 0 0 0 495.0 0.0 309.0 0.0 0.0 57.0 316.0 857.0 0 0 0 0 t 0 0 0 0 0 1161.0 2896.0 255.0 155.0 2896.0 2896.0 135.0 275.0 0 0 0 0
MA1501.1_shift4 (HOXB7)				; dyads_m16 versus MA1501.1 (HOXB7); m=28/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.58338; ----gGyAATTArs--- ; cor=; Ncor= a 0 0 0 0 188.0 0.0 0.0 828.0 828.0 0.0 79.0 828.0 324.0 132.0 0 0 0 c 0 0 0 0 144.0 0.0 359.0 222.0 29.0 0.0 3.0 0.0 165.0 354.0 0 0 0 g 0 0 0 0 380.0 828.0 51.0 0.0 0.0 31.0 0.0 151.0 268.0 250.0 0 0 0 t 0 0 0 0 116.0 87.0 828.0 0.0 0.0 828.0 828.0 0.0 71.0 92.0 0 0 0
MA0888.1_shift4 (EVX2)				; dyads_m16 versus MA0888.1 (EVX2); m=29/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.583342; ----svTaATTAgc--- ; cor=; Ncor= a 0 0 0 0 4411.0 5143.0 2541.0 10108.0 20419.0 5.0 303.0 20419.0 4090.0 3778.0 0 0 0 c 0 0 0 0 5113.0 6306.0 5669.0 5018.0 156.0 166.0 863.0 0.0 4858.0 7715.0 0 0 0 g 0 0 0 0 7814.0 7041.0 969.0 4541.0 881.0 702.0 445.0 1559.0 7789.0 4997.0 0 0 0 t 0 0 0 0 3082.0 1929.0 20419.0 752.0 0.0 20419.0 20419.0 446.0 3682.0 3930.0 0 0 0
MA0874.1_shift0 (Arx)				; dyads_m16 versus MA0874.1 (Arx); m=30/77; ncol2=17; w=12; offset=-3; strand=D; shift=0; score=0.580836; gtscryTAATTArtksw ; cor=; Ncor= a 24.0 13.0 16.0 22.0 50.0 1.0 1.0 98.0 99.0 1.0 1.0 86.0 60.0 16.0 18.0 9.0 53.0 c 22.0 16.0 37.0 56.0 6.0 38.0 13.0 0.0 0.0 1.0 0.0 0.0 1.0 16.0 11.0 36.0 10.0 g 40.0 19.0 29.0 13.0 38.0 1.0 0.0 0.0 1.0 0.0 0.0 13.0 38.0 14.0 44.0 37.0 7.0 t 14.0 52.0 19.0 10.0 7.0 60.0 86.0 1.0 1.0 99.0 98.0 1.0 1.0 54.0 27.0 18.0 30.0
MA0674.1_rc_shift5 (NKX6-1_rc)				; dyads_m16 versus MA0674.1_rc (NKX6-1_rc); m=31/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.569253; -----tTAATkRs---- ; cor=; Ncor= a 0 0 0 0 0 327.0 17.0 2212.0 2212.0 40.0 195.0 1640.0 381.0 0 0 0 0 c 0 0 0 0 0 142.0 132.0 0.0 0.0 12.0 0.0 0.0 734.0 0 0 0 0 g 0 0 0 0 0 294.0 27.0 45.0 0.0 200.0 805.0 573.0 695.0 0 0 0 0 t 0 0 0 0 0 1450.0 2212.0 58.0 0.0 2212.0 1407.0 0.0 403.0 0 0 0 0
MA0721.1_shift5 (UNCX)				; dyads_m16 versus MA0721.1 (UNCX); m=32/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.550682; -----yyAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 4980.0 3975.0 36926.0 36926.0 481.0 3111.0 36926.0 13811.0 0 0 0 0 c 0 0 0 0 0 13363.0 16800.0 2540.0 1302.0 806.0 3958.0 2211.0 7825.0 0 0 0 0 g 0 0 0 0 0 5711.0 2086.0 4582.0 420.0 117.0 1782.0 731.0 10480.0 0 0 0 0 t 0 0 0 0 0 12871.0 20126.0 2629.0 890.0 36926.0 36926.0 3885.0 4810.0 0 0 0 0
MA0722.1_shift5 (VAX1)				; dyads_m16 versus MA0722.1 (VAX1); m=33/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.545836; -----yTAATtAy---- ; cor=; Ncor= a 0 0 0 0 0 447.0 679.0 5253.0 5253.0 297.0 508.0 5253.0 977.0 0 0 0 0 c 0 0 0 0 0 2775.0 995.0 863.0 153.0 86.0 321.0 87.0 1911.0 0 0 0 0 g 0 0 0 0 0 455.0 101.0 189.0 46.0 213.0 1951.0 1332.0 933.0 0 0 0 0 t 0 0 0 0 0 2479.0 5253.0 302.0 133.0 5253.0 5253.0 398.0 1433.0 0 0 0 0
MA1519.1_shift5 (LHX5)				; dyads_m16 versus MA1519.1 (LHX5); m=34/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.542829; -----sYAATTAa---- ; cor=; Ncor= a 0 0 0 0 0 394.0 0.0 7142.0 7142.0 0.0 0.0 7142.0 2749.0 0 0 0 0 c 0 0 0 0 0 3420.0 2093.0 187.0 0.0 0.0 144.0 0.0 1576.0 0 0 0 0 g 0 0 0 0 0 3721.0 0.0 0.0 0.0 0.0 28.0 160.0 1483.0 0 0 0 0 t 0 0 0 0 0 1215.0 5049.0 0.0 0.0 7142.0 7142.0 0.0 1333.0 0 0 0 0
MA0723.1_shift5 (VAX2)				; dyads_m16 versus MA0723.1 (VAX2); m=35/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.54146; -----yTAATkAc---- ; cor=; Ncor= a 0 0 0 0 0 921.0 1410.0 14297.0 14297.0 576.0 1341.0 14297.0 2711.0 0 0 0 0 c 0 0 0 0 0 7816.0 2823.0 2781.0 213.0 161.0 987.0 179.0 5648.0 0 0 0 0 g 0 0 0 0 0 1384.0 221.0 414.0 94.0 564.0 5673.0 3818.0 2869.0 0 0 0 0 t 0 0 0 0 0 6482.0 14297.0 565.0 218.0 14297.0 14297.0 562.0 3069.0 0 0 0 0
MA0716.1_shift5 (PRRX1)				; dyads_m16 versus MA0716.1 (PRRX1); m=36/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.541074; -----yyAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 4132.0 2373.0 23897.0 23897.0 0.0 1264.0 23897.0 9498.0 0 0 0 0 c 0 0 0 0 0 9063.0 11122.0 1088.0 503.0 3.0 2302.0 644.0 4269.0 0 0 0 0 g 0 0 0 0 0 4339.0 1121.0 1776.0 202.0 0.0 1004.0 136.0 6366.0 0 0 0 0 t 0 0 0 0 0 6364.0 12775.0 810.0 209.0 23897.0 23897.0 1229.0 3765.0 0 0 0 0
MA0675.1_rc_shift5 (NKX6-2_rc)				; dyads_m16 versus MA0675.1_rc (NKX6-2_rc); m=37/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.540878; -----tTAATkrs---- ; cor=; Ncor= a 0 0 0 0 0 3846.0 678.0 18935.0 18935.0 546.0 2582.0 11104.0 3874.0 0 0 0 0 c 0 0 0 0 0 1660.0 775.0 551.0 0.0 191.0 1053.0 814.0 5228.0 0 0 0 0 g 0 0 0 0 0 3457.0 370.0 2233.0 0.0 310.0 7581.0 7831.0 6072.0 0 0 0 0 t 0 0 0 0 0 9971.0 18935.0 2468.0 584.0 18935.0 11354.0 1172.0 3761.0 0 0 0 0
MA0654.1_shift5 (ISX)				; dyads_m16 versus MA0654.1 (ISX); m=38/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.533532; -----yyAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 318.0 10.0 2065.0 2065.0 0.0 0.0 2065.0 770.0 0 0 0 0 c 0 0 0 0 0 863.0 1003.0 48.0 16.0 0.0 0.0 0.0 307.0 0 0 0 0 g 0 0 0 0 0 364.0 0.0 5.0 0.0 0.0 24.0 0.0 704.0 0 0 0 0 t 0 0 0 0 0 520.0 1061.0 24.0 10.0 2065.0 2065.0 49.0 283.0 0 0 0 0
MA0630.1_rc_shift5 (SHOX_rc)				; dyads_m16 versus MA0630.1_rc (SHOX_rc); m=39/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.533305; -----yyAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 133.0 111.0 768.0 943.0 2.0 45.0 886.0 357.0 0 0 0 0 c 0 0 0 0 0 379.0 424.0 84.0 27.0 5.0 55.0 9.0 162.0 0 0 0 0 g 0 0 0 0 0 187.0 48.0 50.0 15.0 2.0 48.0 30.0 301.0 0 0 0 0 t 0 0 0 0 0 301.0 416.0 98.0 15.0 991.0 852.0 74.0 179.0 0 0 0 0
MA0075.3_rc_shift5 (PRRX2_rc)				; dyads_m16 versus MA0075.3_rc (PRRX2_rc); m=40/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.531301; -----yTAATTrg---- ; cor=; Ncor= a 0 0 0 0 0 1295.0 0.0 6720.0 6720.0 0.0 0.0 4711.0 1933.0 0 0 0 0 c 0 0 0 0 0 1862.0 399.0 0.0 0.0 0.0 3.0 131.0 1613.0 0 0 0 0 g 0 0 0 0 0 1271.0 1.0 0.0 0.0 0.0 29.0 2008.0 6720.0 0 0 0 0 t 0 0 0 0 0 2291.0 6720.0 0.0 0.0 6720.0 6720.0 122.0 778.0 0 0 0 0
MA0720.1_shift5 (Shox2)				; dyads_m16 versus MA0720.1 (Shox2); m=41/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.530374; -----yyAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 2390.0 979.0 18179.0 18179.0 29.0 597.0 18179.0 6542.0 0 0 0 0 c 0 0 0 0 0 7695.0 9027.0 626.0 138.0 12.0 545.0 193.0 3021.0 0 0 0 0 g 0 0 0 0 0 3292.0 228.0 426.0 3.0 0.0 870.0 36.0 6337.0 0 0 0 0 t 0 0 0 0 0 4802.0 9152.0 766.0 79.0 18179.0 18179.0 895.0 2278.0 0 0 0 0
MA1481.1_shift5 (DRGX)				; dyads_m16 versus MA1481.1 (DRGX); m=42/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.529936; -----yyAATTAs---- ; cor=; Ncor= a 0 0 0 0 0 1172.0 1079.0 14867.0 14867.0 0.0 0.0 14867.0 3117.0 0 0 0 0 c 0 0 0 0 0 8180.0 5997.0 501.0 0.0 0.0 813.0 17.0 4651.0 0 0 0 0 g 0 0 0 0 0 2692.0 1111.0 2037.0 0.0 0.0 209.0 962.0 3995.0 0 0 0 0 t 0 0 0 0 0 6687.0 8870.0 0.0 0.0 14867.0 14867.0 144.0 3105.0 0 0 0 0
MA0725.1_rc_shift5 (VSX1_rc)				; dyads_m16 versus MA0725.1_rc (VSX1_rc); m=43/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.529755; -----vTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 3732.0 1372.0 13572.0 13572.0 90.0 554.0 13572.0 5119.0 0 0 0 0 c 0 0 0 0 0 3658.0 3337.0 984.0 103.0 172.0 553.0 572.0 561.0 0 0 0 0 g 0 0 0 0 0 3555.0 516.0 761.0 199.0 154.0 626.0 3131.0 8453.0 0 0 0 0 t 0 0 0 0 0 2626.0 13572.0 898.0 172.0 13572.0 13572.0 1836.0 756.0 0 0 0 0
MA0726.1_rc_shift5 (VSX2_rc)				; dyads_m16 versus MA0726.1_rc (VSX2_rc); m=44/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.52678; -----cTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 3387.0 1014.0 13809.0 13809.0 63.0 402.0 13809.0 4255.0 0 0 0 0 c 0 0 0 0 0 4288.0 2109.0 447.0 92.0 123.0 343.0 363.0 445.0 0 0 0 0 g 0 0 0 0 0 3243.0 321.0 567.0 186.0 124.0 397.0 2725.0 9554.0 0 0 0 0 t 0 0 0 0 0 2891.0 13809.0 626.0 118.0 13809.0 13809.0 1080.0 427.0 0 0 0 0
MA0717.1_rc_shift5 (RAX2_rc)				; dyads_m16 versus MA0717.1_rc (RAX2_rc); m=45/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.526439; -----yTAATTrr---- ; cor=; Ncor= a 0 0 0 0 0 5601.0 4258.0 38860.0 38860.0 1030.0 2421.0 19215.0 10666.0 0 0 0 0 c 0 0 0 0 0 12362.0 360.0 2513.0 125.0 757.0 4490.0 1688.0 7049.0 0 0 0 0 g 0 0 0 0 0 7487.0 2644.0 4232.0 738.0 1523.0 3060.0 19645.0 15810.0 0 0 0 0 t 0 0 0 0 0 13411.0 38860.0 2167.0 270.0 38860.0 38860.0 3558.0 5334.0 0 0 0 0
MA1577.1_rc_shift5 (TLX2_rc)				; dyads_m16 versus MA1577.1_rc (TLX2_rc); m=46/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.525679; -----yTAATTrr---- ; cor=; Ncor= a 0 0 0 0 0 852.0 0.0 7799.0 7799.0 0.0 0.0 8156.0 2379.0 0 0 0 0 c 0 0 0 0 0 3439.0 0.0 0.0 0.0 0.0 80.0 1112.0 1851.0 0 0 0 0 g 0 0 0 0 0 1323.0 0.0 0.0 0.0 0.0 0.0 7799.0 2572.0 0 0 0 0 t 0 0 0 0 0 2184.0 7799.0 0.0 0.0 7799.0 7799.0 1435.0 997.0 0 0 0 0
MA0701.2_shift5 (LHX9)				; dyads_m16 versus MA0701.2 (LHX9); m=47/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.519676; -----CyAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 390.0 0.0 6075.0 6075.0 0.0 0.0 6075.0 2261.0 0 0 0 0 c 0 0 0 0 0 6075.0 2093.0 505.0 0.0 0.0 0.0 0.0 1013.0 0 0 0 0 g 0 0 0 0 0 1056.0 0.0 0.0 0.0 0.0 170.0 305.0 1946.0 0 0 0 0 t 0 0 0 0 0 1219.0 3983.0 20.0 0.0 6075.0 6075.0 0.0 856.0 0 0 0 0
MA0612.2_rc_shift5 (EMX1_rc)				; dyads_m16 versus MA0612.2_rc (EMX1_rc); m=48/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.519542; -----sTAATTAs---- ; cor=; Ncor= a 0 0 0 0 0 1062.0 0.0 9544.0 9544.0 0.0 0.0 7281.0 1777.0 0 0 0 0 c 0 0 0 0 0 4516.0 0.0 933.0 0.0 0.0 0.0 0.0 3066.0 0 0 0 0 g 0 0 0 0 0 2633.0 0.0 0.0 0.0 0.0 1235.0 2263.0 3425.0 0 0 0 0 t 0 0 0 0 0 1333.0 9544.0 0.0 0.0 9544.0 9544.0 19.0 1276.0 0 0 0 0
MA0900.2_rc_shift5 (HOXA2_rc)				; dyads_m16 versus MA0900.2_rc (HOXA2_rc); m=49/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.518231; -----sTAATKAs---- ; cor=; Ncor= a 0 0 0 0 0 7731.0 0.0 56949.0 56949.0 0.0 0.0 56949.0 5931.0 0 0 0 0 c 0 0 0 0 0 22246.0 2052.0 0.0 0.0 0.0 290.0 0.0 22686.0 0 0 0 0 g 0 0 0 0 0 16330.0 0.0 0.0 0.0 0.0 17275.0 3636.0 19452.0 0 0 0 0 t 0 0 0 0 0 10641.0 56949.0 0.0 0.0 56949.0 39674.0 0.0 8880.0 0 0 0 0
MA0132.2_rc_shift5 (PDX1_rc)				; dyads_m16 versus MA0132.2_rc (PDX1_rc); m=50/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.517504; -----yTAATkrs---- ; cor=; Ncor= a 0 0 0 0 0 852.0 0.0 7130.0 7130.0 0.0 78.0 4661.0 999.0 0 0 0 0 c 0 0 0 0 0 2881.0 0.0 0.0 0.0 0.0 185.0 0.0 2441.0 0 0 0 0 g 0 0 0 0 0 1216.0 0.0 0.0 0.0 45.0 2291.0 2469.0 2206.0 0 0 0 0 t 0 0 0 0 0 2181.0 7130.0 0.0 0.0 7130.0 4839.0 292.0 1483.0 0 0 0 0
MA0715.1_rc_shift6 (PROP1_rc)				; dyads_m16 versus MA0715.1_rc (PROP1_rc); m=51/77; ncol2=11; w=9; offset=3; strand=R; shift=6; score=0.514971; ------TAATTwrATTA ; cor=; Ncor= a 0 0 0 0 0 0 47.0 575.0 575.0 6.0 33.0 258.0 367.0 575.0 0.0 11.0 575.0 c 0 0 0 0 0 0 15.0 6.0 0.0 46.0 0.0 78.0 20.0 18.0 2.0 0.0 10.0 g 0 0 0 0 0 0 0.0 18.0 0.0 3.0 38.0 57.0 209.0 39.0 0.0 0.0 12.0 t 0 0 0 0 0 0 575.0 13.0 2.0 575.0 575.0 183.0 28.0 41.0 575.0 575.0 63.0
MA1505.1_shift5 (HOXC8)				; dyads_m16 versus MA1505.1 (HOXC8); m=52/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.513742; -----gyAATTRc---- ; cor=; Ncor= a 0 0 0 0 0 1766.0 0.0 9273.0 9273.0 0.0 961.0 9273.0 2265.0 0 0 0 0 c 0 0 0 0 0 1552.0 4555.0 2727.0 20.0 0.0 99.0 0.0 3851.0 0 0 0 0 g 0 0 0 0 0 3724.0 0.0 19.0 0.0 211.0 2656.0 4325.0 1469.0 0 0 0 0 t 0 0 0 0 0 2230.0 9273.0 983.0 0.0 9273.0 9273.0 0.0 1687.0 0 0 0 0
MA1495.1_shift5 (HOXA1)				; dyads_m16 versus MA1495.1 (HOXA1); m=53/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.51008; -----sTAATtAs---- ; cor=; Ncor= a 0 0 0 0 0 1167.0 0.0 7406.0 7406.0 0.0 0.0 7406.0 1175.0 0 0 0 0 c 0 0 0 0 0 2244.0 1546.0 2083.0 0.0 0.0 1310.0 0.0 2811.0 0 0 0 0 g 0 0 0 0 0 2667.0 0.0 1244.0 0.0 0.0 2265.0 1576.0 2237.0 0 0 0 0 t 0 0 0 0 0 1328.0 7406.0 0.0 0.0 7406.0 7406.0 0.0 1182.0 0 0 0 0
MA0027.2_rc_shift5 (EN1_rc)				; dyads_m16 versus MA0027.2_rc (EN1_rc); m=54/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.503542; -----cTAATTrs---- ; cor=; Ncor= a 0 0 0 0 0 302.0 132.0 2891.0 2891.0 0.0 0.0 1562.0 525.0 0 0 0 0 c 0 0 0 0 0 1216.0 30.0 162.0 0.0 0.0 71.0 5.0 765.0 0 0 0 0 g 0 0 0 0 0 683.0 0.0 483.0 0.0 28.0 99.0 1328.0 1174.0 0 0 0 0 t 0 0 0 0 0 689.0 2891.0 57.0 0.0 2891.0 2891.0 104.0 427.0 0 0 0 0
MA0885.1_shift5 (Dlx2)				; dyads_m16 versus MA0885.1 (Dlx2); m=55/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.503189; -----syAATTAw---- ; cor=; Ncor= a 0 0 0 0 0 3170.0 543.0 13749.0 13749.0 0.0 260.0 13749.0 3710.0 0 0 0 0 c 0 0 0 0 0 3565.0 7409.0 684.0 289.0 0.0 393.0 46.0 3277.0 0 0 0 0 g 0 0 0 0 0 4739.0 135.0 488.0 15.0 0.0 565.0 55.0 3065.0 0 0 0 0 t 0 0 0 0 0 2275.0 6340.0 524.0 179.0 13749.0 13749.0 579.0 3697.0 0 0 0 0
MA0618.1_shift5 (LBX1)				; dyads_m16 versus MA0618.1 (LBX1); m=56/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.502339; -----tTAAYTRG---- ; cor=; Ncor= a 0 0 0 0 0 217.0 0.0 999.0 999.0 0.0 143.0 731.0 29.0 0 0 0 0 c 0 0 0 0 0 131.0 49.0 0.0 0.0 262.0 0.0 0.0 114.0 0 0 0 0 g 0 0 0 0 0 174.0 0.0 0.0 0.0 0.0 119.0 268.0 799.0 0 0 0 0 t 0 0 0 0 0 478.0 951.0 0.0 0.0 738.0 738.0 0.0 57.0 0 0 0 0
MA1504.1_rc_shift5 (HOXC4_rc)				; dyads_m16 versus MA1504.1_rc (HOXC4_rc); m=57/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.502123; -----yTAATkRy---- ; cor=; Ncor= a 0 0 0 0 0 1592.0 0.0 8759.0 8759.0 0.0 0.0 8759.0 1353.0 0 0 0 0 c 0 0 0 0 0 2713.0 825.0 0.0 0.0 583.0 0.0 0.0 2809.0 0 0 0 0 g 0 0 0 0 0 1679.0 0.0 0.0 0.0 0.0 5152.0 3111.0 1867.0 0 0 0 0 t 0 0 0 0 0 2776.0 8759.0 0.0 0.0 8759.0 3607.0 188.0 2731.0 0 0 0 0
MA1507.1_shift5 (HOXD4)				; dyads_m16 versus MA1507.1 (HOXD4); m=58/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.501093; -----rYmATTAr---- ; cor=; Ncor= a 0 0 0 0 0 1186.0 0.0 1542.0 3405.0 0.0 0.0 3405.0 1102.0 0 0 0 0 c 0 0 0 0 0 705.0 1184.0 1862.0 0.0 0.0 0.0 0.0 525.0 0 0 0 0 g 0 0 0 0 0 1155.0 0.0 0.0 176.0 0.0 0.0 194.0 1147.0 0 0 0 0 t 0 0 0 0 0 359.0 3405.0 0.0 0.0 3405.0 3405.0 0.0 631.0 0 0 0 0
MA1499.1_rc_shift5 (HOXB4_rc)				; dyads_m16 versus MA1499.1_rc (HOXB4_rc); m=59/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.499417; -----yTAATkAy---- ; cor=; Ncor= a 0 0 0 0 0 1388.0 0.0 9080.0 9080.0 0.0 0.0 9080.0 1021.0 0 0 0 0 c 0 0 0 0 0 4683.0 55.0 271.0 0.0 265.0 0.0 0.0 4397.0 0 0 0 0 g 0 0 0 0 0 1409.0 0.0 0.0 0.0 0.0 5459.0 2103.0 1377.0 0 0 0 0 t 0 0 0 0 0 4397.0 9080.0 0.0 0.0 9080.0 3621.0 0.0 4683.0 0 0 0 0
MA0882.1_shift5 (DLX6)				; dyads_m16 versus MA0882.1 (DLX6); m=60/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.498578; -----syAATTAm---- ; cor=; Ncor= a 0 0 0 0 0 602.0 137.0 2623.0 2623.0 12.0 48.0 2623.0 703.0 0 0 0 0 c 0 0 0 0 0 925.0 1410.0 273.0 124.0 0.0 140.0 30.0 823.0 0 0 0 0 g 0 0 0 0 0 680.0 21.0 143.0 0.0 0.0 68.0 16.0 473.0 0 0 0 0 t 0 0 0 0 0 415.0 1212.0 184.0 56.0 2623.0 2623.0 193.0 624.0 0 0 0 0
MA0705.1_shift5 (Lhx8)				; dyads_m16 versus MA0705.1 (Lhx8); m=61/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.498512; -----cYAATYRr---- ; cor=; Ncor= a 0 0 0 0 0 472.0 0.0 5092.0 5092.0 0.0 0.0 5092.0 1366.0 0 0 0 0 c 0 0 0 0 0 2588.0 1996.0 160.0 0.0 0.0 2083.0 0.0 1156.0 0 0 0 0 g 0 0 0 0 0 925.0 0.0 1670.0 0.0 0.0 88.0 1929.0 2156.0 0 0 0 0 t 0 0 0 0 0 1108.0 5092.0 0.0 0.0 5092.0 5092.0 0.0 414.0 0 0 0 0
MA0713.1_shift1 (PHOX2A)				; dyads_m16 versus MA0713.1 (PHOX2A); m=62/77; ncol2=11; w=9; offset=-2; strand=D; shift=1; score=0.496382; -TAAtyyAATTA----- ; cor=; Ncor= a 0 2164.0 11434.0 11434.0 1362.0 639.0 1262.0 11434.0 11434.0 0.0 1135.0 11434.0 0 0 0 0 0 c 0 1240.0 225.0 0.0 4424.0 5304.0 4580.0 717.0 199.0 10.0 778.0 229.0 0 0 0 0 0 g 0 497.0 1539.0 34.0 629.0 2300.0 806.0 1896.0 309.0 2.0 81.0 816.0 0 0 0 0 0 t 0 11434.0 1001.0 5.0 11434.0 6130.0 6855.0 437.0 132.0 11434.0 11434.0 1657.0 0 0 0 0 0
MA0068.2_rc_shift5 (PAX4_rc)				; dyads_m16 versus MA0068.2_rc (PAX4_rc); m=63/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.496315; -----cTAATTag---- ; cor=; Ncor= a 0 0 0 0 0 41.0 12.0 333.0 333.0 0.0 3.0 333.0 105.0 0 0 0 0 c 0 0 0 0 0 333.0 11.0 10.0 5.0 0.0 0.0 120.0 47.0 0 0 0 0 g 0 0 0 0 0 93.0 89.0 11.0 0.0 0.0 2.0 30.0 333.0 0 0 0 0 t 0 0 0 0 0 150.0 333.0 18.0 0.0 333.0 333.0 58.0 37.0 0 0 0 0
MA0880.1_shift5 (Dlx3)				; dyads_m16 versus MA0880.1 (Dlx3); m=64/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.495461; -----syAATTAm---- ; cor=; Ncor= a 0 0 0 0 0 1697.0 572.0 7323.0 7323.0 173.0 399.0 7323.0 2027.0 0 0 0 0 c 0 0 0 0 0 2338.0 4133.0 995.0 536.0 66.0 535.0 202.0 2131.0 0 0 0 0 g 0 0 0 0 0 2079.0 164.0 587.0 62.0 60.0 452.0 101.0 1356.0 0 0 0 0 t 0 0 0 0 0 1208.0 3190.0 643.0 299.0 7323.0 7323.0 691.0 1809.0 0 0 0 0
MA0902.2_shift5 (HOXB2)				; dyads_m16 versus MA0902.2 (HOXB2); m=65/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.48925; -----symATTAs---- ; cor=; Ncor= a 0 0 0 0 0 807.0 51.0 6827.0 6827.0 0.0 0.0 6827.0 1273.0 0 0 0 0 c 0 0 0 0 0 2038.0 2834.0 3276.0 0.0 0.0 0.0 0.0 2031.0 0 0 0 0 g 0 0 0 0 0 2925.0 0.0 199.0 0.0 0.0 1876.0 0.0 2933.0 0 0 0 0 t 0 0 0 0 0 1056.0 3993.0 0.0 0.0 6827.0 6827.0 0.0 589.0 0 0 0 0
MA0881.1_rc_shift5 (Dlx4_rc)				; dyads_m16 versus MA0881.1_rc (Dlx4_rc); m=66/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.48893; -----kTAATTrs---- ; cor=; Ncor= a 0 0 0 0 0 2999.0 1127.0 12054.0 12054.0 499.0 883.0 5213.0 1811.0 0 0 0 0 c 0 0 0 0 0 2286.0 134.0 542.0 38.0 55.0 739.0 145.0 3679.0 0 0 0 0 g 0 0 0 0 0 3703.0 316.0 868.0 85.0 744.0 1500.0 6841.0 3928.0 0 0 0 0 t 0 0 0 0 0 3065.0 12054.0 440.0 88.0 12054.0 12054.0 724.0 2637.0 0 0 0 0
MA0125.1_rc_shift4 (Nobox_rc)				; dyads_m16 versus MA0125.1_rc (Nobox_rc); m=67/77; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.488788; ----rsyAATTA----- ; cor=; Ncor= a 0 0 0 0 17.0 4.0 1.0 32.0 34.0 0.0 2.0 37.0 0 0 0 0 0 c 0 0 0 0 6.0 18.0 22.0 4.0 2.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 13.0 12.0 0.0 0.0 1.0 0.0 0.0 1.0 0 0 0 0 0 t 0 0 0 0 2.0 4.0 15.0 2.0 1.0 38.0 36.0 0.0 0 0 0 0 0
MA0904.2_shift5 (HOXB5)				; dyads_m16 versus MA0904.2 (HOXB5); m=68/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.485886; -----sTMATKAs---- ; cor=; Ncor= a 0 0 0 0 0 381.0 0.0 3067.0 3067.0 0.0 6.0 3067.0 253.0 0 0 0 0 c 0 0 0 0 0 1120.0 537.0 1031.0 0.0 0.0 26.0 0.0 1219.0 0 0 0 0 g 0 0 0 0 0 1273.0 0.0 0.0 0.0 0.0 1061.0 564.0 1146.0 0 0 0 0 t 0 0 0 0 0 294.0 3067.0 0.0 0.0 3067.0 3067.0 0.0 450.0 0 0 0 0
MA0912.2_rc_shift5 (HOXD3_rc)				; dyads_m16 versus MA0912.2_rc (HOXD3_rc); m=69/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.485708; -----gTAATTAG---- ; cor=; Ncor= a 0 0 0 0 0 1674.0 0.0 14562.0 14562.0 0.0 0.0 14562.0 2947.0 0 0 0 0 c 0 0 0 0 0 3187.0 2198.0 4453.0 0.0 0.0 0.0 0.0 827.0 0 0 0 0 g 0 0 0 0 0 8987.0 0.0 0.0 0.0 0.0 742.0 94.0 11615.0 0 0 0 0 t 0 0 0 0 0 714.0 14562.0 0.0 0.0 14562.0 14562.0 0.0 276.0 0 0 0 0
MA0158.2_shift5 (HOXA5)				; dyads_m16 versus MA0158.2 (HOXA5); m=70/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.481231; -----symATTAs---- ; cor=; Ncor= a 0 0 0 0 0 142.0 0.0 3130.0 3130.0 0.0 0.0 3130.0 480.0 0 0 0 0 c 0 0 0 0 0 832.0 1052.0 1632.0 0.0 0.0 0.0 0.0 1463.0 0 0 0 0 g 0 0 0 0 0 1759.0 0.0 81.0 0.0 0.0 885.0 0.0 1133.0 0 0 0 0 t 0 0 0 0 0 397.0 2078.0 0.0 0.0 3130.0 3130.0 0.0 54.0 0 0 0 0
MA1500.1_shift5 (HOXB6)				; dyads_m16 versus MA1500.1 (HOXB6); m=71/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.480457; -----tTAATkrc---- ; cor=; Ncor= a 0 0 0 0 0 1357.0 0.0 6192.0 6192.0 0.0 403.0 3128.0 691.0 0 0 0 0 c 0 0 0 0 0 2468.0 710.0 647.0 0.0 436.0 926.0 0.0 4868.0 0 0 0 0 g 0 0 0 0 0 2395.0 0.0 0.0 0.0 727.0 4139.0 3064.0 996.0 0 0 0 0 t 0 0 0 0 0 3724.0 6192.0 564.0 0.0 6192.0 6192.0 0.0 1324.0 0 0 0 0
MA1476.1_shift5 (DLX5)				; dyads_m16 versus MA1476.1 (DLX5); m=72/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.478878; -----syAATTAy---- ; cor=; Ncor= a 0 0 0 0 0 2115.0 125.0 12919.0 12919.0 0.0 0.0 12919.0 2285.0 0 0 0 0 c 0 0 0 0 0 3457.0 7614.0 68.0 0.0 0.0 0.0 0.0 3811.0 0 0 0 0 g 0 0 0 0 0 5502.0 0.0 47.0 0.0 0.0 0.0 0.0 3096.0 0 0 0 0 t 0 0 0 0 0 1845.0 5305.0 0.0 0.0 12919.0 12919.0 0.0 3727.0 0 0 0 0
MA0709.1_shift5 (Msx3)				; dyads_m16 versus MA0709.1 (Msx3); m=73/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.477918; -----syAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 1381.0 312.0 8380.0 8380.0 0.0 121.0 8380.0 2689.0 0 0 0 0 c 0 0 0 0 0 3247.0 5798.0 160.0 89.0 0.0 215.0 59.0 1737.0 0 0 0 0 g 0 0 0 0 0 2496.0 29.0 237.0 38.0 0.0 105.0 88.0 2595.0 0 0 0 0 t 0 0 0 0 0 1256.0 2582.0 94.0 5.0 8380.0 8380.0 213.0 1360.0 0 0 0 0
MA0151.1_shift8 (Arid3a)				; dyads_m16 versus MA0151.1 (Arid3a); m=74/77; ncol2=6; w=6; offset=5; strand=D; shift=8; score=0.475297; --------ATyAAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 27.0 0.0 1.0 27.0 27.0 20.0 0 0 0 c 0 0 0 0 0 0 0 0 0.0 0.0 9.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 0 0 0 t 0 0 0 0 0 0 0 0 0.0 27.0 17.0 0.0 0.0 6.0 0 0 0
MA0666.1_rc_shift5 (MSX1_rc)				; dyads_m16 versus MA0666.1_rc (MSX1_rc); m=75/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.468562; -----bTAATTrs---- ; cor=; Ncor= a 0 0 0 0 0 460.0 91.0 3073.0 3073.0 0.0 16.0 956.0 501.0 0 0 0 0 c 0 0 0 0 0 945.0 105.0 251.0 31.0 0.0 139.0 33.0 787.0 0 0 0 0 g 0 0 0 0 0 814.0 118.0 205.0 0.0 107.0 332.0 2117.0 1324.0 0 0 0 0 t 0 0 0 0 0 855.0 3073.0 63.0 0.0 3073.0 3073.0 82.0 461.0 0 0 0 0
MA0893.2_shift5 (GSX2)				; dyads_m16 versus MA0893.2 (GSX2); m=76/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.467828; -----symATTAr---- ; cor=; Ncor= a 0 0 0 0 0 816.0 503.0 2775.0 4998.0 0.0 0.0 4998.0 2158.0 0 0 0 0 c 0 0 0 0 0 2277.0 2611.0 2223.0 0.0 121.0 0.0 0.0 659.0 0 0 0 0 g 0 0 0 0 0 2721.0 400.0 95.0 708.0 0.0 77.0 1005.0 2840.0 0 0 0 0 t 0 0 0 0 0 0.0 4998.0 29.0 0.0 4998.0 4998.0 20.0 918.0 0 0 0 0
MA0681.2_shift4 (PHOX2B)				; dyads_m16 versus MA0681.2 (PHOX2B); m=77/77; ncol2=16; w=11; offset=1; strand=D; shift=4; score=0.465783; ----wwTAATCAAATTA ; cor=; Ncor= a 0 0 0 0 18530.0 19443.0 10344.0 42696.0 51239.0 1742.0 2451.0 43074.0 48550.0 50675.0 921.0 4103.0 42869.0 c 0 0 0 0 7301.0 7036.0 2748.0 1935.0 496.0 615.0 36619.0 1895.0 1453.0 451.0 329.0 1923.0 1936.0 g 0 0 0 0 8172.0 6744.0 2542.0 2289.0 508.0 467.0 1873.0 588.0 1418.0 761.0 372.0 1232.0 2155.0 t 0 0 0 0 19233.0 20013.0 37602.0 6316.0 993.0 50412.0 12293.0 7679.0 1815.0 1349.0 51614.0 45978.0 6276.0