One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m17/peak-motifs_dyads_m17.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m17/peak-motifs_dyads_m17_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m17_shift1 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m17_shift1 (dyads_m17dyads_m17)
; dyads_m17 (dyads_m17dyads_m17); m=0 (reference); ncol1=10; shift=1; ncol=14; -sdGCCACCwm--- ; Alignment reference a 0 4 8 0 0 0 26 0 0 10 7 0 0 0 c 0 11 1 0 27 27 0 27 27 5 11 0 0 0 g 0 10 9 27 0 0 1 0 0 1 5 0 0 0 t 0 2 9 0 0 0 0 0 0 11 4 0 0 0

MA0739.1_shift1 (Hic1)
; dyads_m17 versus MA0739.1 (Hic1); m=1/5; ncol2=9; w=9; offset=0; strand=D; shift=1; score=0.665596; -rTGCCAaCc---- ; cor=; Ncor= a 0 6337.0 62.0 950.0 50.0 88.0 9008.0 6140.0 1220.0 1610.0 0 0 0 0 c 0 719.0 422.0 588.0 11007.0 11007.0 1999.0 1986.0 11007.0 4822.0 0 0 0 0 g 0 4670.0 73.0 11007.0 121.0 31.0 3.0 2267.0 1629.0 1884.0 0 0 0 0 t 0 666.0 11007.0 183.0 0.0 68.0 317.0 614.0 1488.0 2692.0 0 0 0 0

MA0695.1_shift0 (ZBTB7C)
; dyads_m17 versus MA0695.1 (ZBTB7C); m=2/5; ncol2=12; w=10; offset=-1; strand=D; shift=0; score=0.594156; rcgACCACCgam-- ; cor=; Ncor= a 272.0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 253.0 1018.0 333.0 0 0 c 118.0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 138.0 444.0 315.0 0 0 g 463.0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 527.0 251.0 196.0 0 0 t 164.0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 100.0 419.0 174.0 0 0

MA1102.2_rc_shift1 (CTCFL_rc)
; dyads_m17 versus MA1102.2_rc (CTCFL_rc); m=3/5; ncol2=12; w=10; offset=0; strand=R; shift=1; score=0.593472; -scGCCCCCTGsy- ; cor=; Ncor= a 0 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 0 c 0 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 0 g 0 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 0 t 0 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0 0

MA0839.1_shift1 (CREB3L1)
; dyads_m17 versus MA0839.1 (CREB3L1); m=4/5; ncol2=14; w=10; offset=0; strand=D; shift=1; score=0.502053; -rTGCCACGTCAyC ; cor=; Ncor= a 0 247.0 38.0 20.0 61.0 3.0 671.0 0.0 21.0 7.0 121.0 671.0 60.0 76.0 c 0 143.0 159.0 3.0 671.0 671.0 0.0 671.0 3.0 0.0 671.0 33.0 186.0 671.0 g 0 181.0 29.0 671.0 0.0 0.0 3.0 3.0 671.0 3.0 40.0 72.0 125.0 64.0 t 0 100.0 671.0 18.0 2.0 5.0 0.0 0.0 0.0 671.0 10.0 39.0 300.0 79.0

MA0130.1_shift2 (ZNF354C)
; dyads_m17 versus MA0130.1 (ZNF354C); m=5/5; ncol2=6; w=6; offset=1; strand=D; shift=2; score=0.446956; --mTCCAC------ ; cor=; Ncor= a 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 c 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 g 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 t 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m17_shift1 (dyads_m17dyads_m17)				; dyads_m17 (dyads_m17dyads_m17); m=0 (reference); ncol1=10; shift=1; ncol=14; -sdGCCACCwm--- ; Alignment reference a 0 4 8 0 0 0 26 0 0 10 7 0 0 0 c 0 11 1 0 27 27 0 27 27 5 11 0 0 0 g 0 10 9 27 0 0 1 0 0 1 5 0 0 0 t 0 2 9 0 0 0 0 0 0 11 4 0 0 0
MA0739.1_shift1 (Hic1)				; dyads_m17 versus MA0739.1 (Hic1); m=1/5; ncol2=9; w=9; offset=0; strand=D; shift=1; score=0.665596; -rTGCCAaCc---- ; cor=; Ncor= a 0 6337.0 62.0 950.0 50.0 88.0 9008.0 6140.0 1220.0 1610.0 0 0 0 0 c 0 719.0 422.0 588.0 11007.0 11007.0 1999.0 1986.0 11007.0 4822.0 0 0 0 0 g 0 4670.0 73.0 11007.0 121.0 31.0 3.0 2267.0 1629.0 1884.0 0 0 0 0 t 0 666.0 11007.0 183.0 0.0 68.0 317.0 614.0 1488.0 2692.0 0 0 0 0
MA0695.1_shift0 (ZBTB7C)				; dyads_m17 versus MA0695.1 (ZBTB7C); m=2/5; ncol2=12; w=10; offset=-1; strand=D; shift=0; score=0.594156; rcgACCACCgam-- ; cor=; Ncor= a 272.0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 253.0 1018.0 333.0 0 0 c 118.0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 138.0 444.0 315.0 0 0 g 463.0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 527.0 251.0 196.0 0 0 t 164.0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 100.0 419.0 174.0 0 0
MA1102.2_rc_shift1 (CTCFL_rc)				; dyads_m17 versus MA1102.2_rc (CTCFL_rc); m=3/5; ncol2=12; w=10; offset=0; strand=R; shift=1; score=0.593472; -scGCCCCCTGsy- ; cor=; Ncor= a 0 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 0 c 0 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 0 g 0 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 0 t 0 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0 0
MA0839.1_shift1 (CREB3L1)				; dyads_m17 versus MA0839.1 (CREB3L1); m=4/5; ncol2=14; w=10; offset=0; strand=D; shift=1; score=0.502053; -rTGCCACGTCAyC ; cor=; Ncor= a 0 247.0 38.0 20.0 61.0 3.0 671.0 0.0 21.0 7.0 121.0 671.0 60.0 76.0 c 0 143.0 159.0 3.0 671.0 671.0 0.0 671.0 3.0 0.0 671.0 33.0 186.0 671.0 g 0 181.0 29.0 671.0 0.0 0.0 3.0 3.0 671.0 3.0 40.0 72.0 125.0 64.0 t 0 100.0 671.0 18.0 2.0 5.0 0.0 0.0 0.0 671.0 10.0 39.0 300.0 79.0
MA0130.1_shift2 (ZNF354C)				; dyads_m17 versus MA0130.1 (ZNF354C); m=5/5; ncol2=6; w=6; offset=1; strand=D; shift=2; score=0.446956; --mTCCAC------ ; cor=; Ncor= a 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 c 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 g 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 t 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0