One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m2_shift0 ; 22 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
dyads_m2_shift0 (dyads_m2dyads_m2)     
; dyads_m2 (dyads_m2dyads_m2); m=0 (reference); ncol1=18; shift=0; ncol=18; krrrACAGCTGCTGtcta
; Alignment reference
a	3	6	6	4	11	0	13	0	0	0	0	1	1	0	2	1	3	5
c	1	1	0	1	0	13	0	1	13	0	0	10	0	1	3	7	3	2
g	5	4	4	8	2	0	0	12	0	0	13	0	0	12	0	2	0	3
t	4	2	3	0	0	0	0	0	0	13	0	2	12	0	8	3	7	3
MA0832.1_shift1 (Tcf21) 
; dyads_m2 versus MA0832.1 (Tcf21); m=1/21; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.637686; -ryAACAGCTGTTry---
; cor=; Ncor=
a	0	55.0	28.0	171.0	171.0	0.0	171.0	0.0	0.0	0.0	0.0	0.0	5.0	50.0	30.0	0	0	0
c	0	29.0	76.0	1.0	10.0	171.0	1.0	0.0	171.0	0.0	0.0	4.0	23.0	23.0	49.0	0	0	0
g	0	70.0	22.0	23.0	0.0	0.0	0.0	171.0	1.0	0.0	171.0	20.0	0.0	80.0	32.0	0	0	0
t	0	17.0	46.0	3.0	0.0	0.0	0.0	2.0	1.0	171.0	0.0	171.0	171.0	19.0	60.0	0	0	0
MA0499.2_rc_shift1 (MYOD1_rc) 
; dyads_m2 versus MA0499.2_rc (MYOD1_rc); m=2/21; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.581557; -rkrACAGGTGcwg----
; cor=; Ncor=
a	0	9358.0	8151.0	9000.0	29644.0	238.0	33130.0	330.0	1226.0	587.0	269.0	2245.0	9291.0	7728.0	0	0	0	0
c	0	7495.0	6202.0	4440.0	1699.0	33468.0	366.0	932.0	7336.0	849.0	354.0	21884.0	8444.0	8118.0	0	0	0	0
g	0	11760.0	10485.0	19052.0	2555.0	386.0	563.0	32504.0	25275.0	583.0	33328.0	5622.0	7103.0	11279.0	0	0	0	0
t	0	5687.0	9462.0	1808.0	402.0	208.0	241.0	534.0	463.0	32281.0	349.0	4549.0	9462.0	7175.0	0	0	0	0
MA1485.1_rc_shift1 (FERD3L_rc) 
; dyads_m2 versus MA1485.1_rc (FERD3L_rc); m=3/21; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.575183; -GTrACAGCTGkyrC---
; cor=; Ncor=
a	0	48.0	958.0	14919.0	21065.0	0.0	29605.0	0.0	4691.0	144.0	0.0	1710.0	74.0	9557.0	225.0	0	0	0
c	0	0.0	9815.0	5920.0	3395.0	29605.0	210.0	471.0	29605.0	118.0	0.0	3142.0	12703.0	348.0	29605.0	0	0	0
g	0	29605.0	809.0	8664.0	3878.0	0.0	129.0	29605.0	841.0	126.0	29605.0	9363.0	2443.0	20049.0	68.0	0	0	0
t	0	0.0	29605.0	103.0	1268.0	0.0	81.0	3649.0	0.0	29605.0	36.0	15390.0	14384.0	450.0	2158.0	0	0	0
MA0500.2_rc_shift2 (MYOG_rc) 
; dyads_m2 versus MA0500.2_rc (MYOG_rc); m=4/21; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.570944; --sarCAGCTGyts----
; cor=; Ncor=
a	0	0	5310.0	8475.0	7192.0	88.0	21777.0	95.0	169.0	163.0	182.0	1678.0	4692.0	5070.0	0	0	0	0
c	0	0	6369.0	3718.0	2706.0	21985.0	179.0	131.0	21963.0	236.0	101.0	10790.0	5483.0	5596.0	0	0	0	0
g	0	0	5660.0	5497.0	10792.0	102.0	238.0	21964.0	130.0	176.0	21988.0	2730.0	3754.0	6381.0	0	0	0	0
t	0	0	5018.0	4667.0	1667.0	182.0	163.0	167.0	95.0	21782.0	86.0	7159.0	8428.0	5310.0	0	0	0	0
MA1641.1_shift2 (MYF5) 
; dyads_m2 versus MA1641.1 (MYF5); m=5/21; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.551711; --gvaCAGCTGtbc----
; cor=; Ncor=
a	0	0	2698.0	3507.0	7490.0	95.0	10965.0	100.0	223.0	129.0	42.0	578.0	1572.0	2554.0	0	0	0	0
c	0	0	2700.0	2986.0	1368.0	10911.0	47.0	230.0	10657.0	68.0	161.0	1775.0	3146.0	3258.0	0	0	0	0
g	0	0	3258.0	3145.0	1774.0	161.0	69.0	10658.0	230.0	47.0	10912.0	1368.0	2985.0	2701.0	0	0	0	0
t	0	0	2554.0	1572.0	578.0	43.0	129.0	222.0	100.0	10966.0	95.0	7489.0	3507.0	2697.0	0	0	0	0
MA0521.1_shift3 (Tcf12) 
; dyads_m2 versus MA0521.1 (Tcf12); m=6/21; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.546617; ---rRCAGCTGswg----
; cor=; Ncor=
a	0	0	0	6170.0	8820.0	0.0	12895.0	8.0	184.0	0.0	0.0	1875.0	3912.0	2863.0	0	0	0	0
c	0	0	0	1585.0	124.0	12895.0	0.0	0.0	10822.0	0.0	0.0	5527.0	2416.0	3005.0	0	0	0	0
g	0	0	0	5123.0	3951.0	0.0	0.0	12887.0	1889.0	0.0	12895.0	3811.0	2925.0	4836.0	0	0	0	0
t	0	0	0	17.0	0.0	0.0	0.0	0.0	0.0	12895.0	0.0	1682.0	3642.0	2191.0	0	0	0	0
MA1619.1_shift2 (Ptf1a(var.2)) 
; dyads_m2 versus MA1619.1 (Ptf1a(var.2)); m=7/21; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.546502; --rmaCAGCTGtky----
; cor=; Ncor=
a	0	0	1869.0	1978.0	4346.0	49.0	7119.0	34.0	224.0	26.0	27.0	535.0	1221.0	1602.0	0	0	0	0
c	0	0	1803.0	2430.0	1070.0	7149.0	41.0	307.0	6697.0	66.0	27.0	1312.0	1632.0	1977.0	0	0	0	0
g	0	0	1974.0	1629.0	1308.0	28.0	65.0	6689.0	299.0	40.0	7150.0	1065.0	2426.0	1803.0	0	0	0	0
t	0	0	1607.0	1216.0	529.0	27.0	28.0	223.0	33.0	7121.0	49.0	4341.0	1974.0	1871.0	0	0	0	0
MA1618.1_shift2 (Ptf1a) 
; dyads_m2 versus MA1618.1 (Ptf1a); m=8/21; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.514266; --dmaCAGATGttkh---
; cor=; Ncor=
a	0	0	4092.0	4476.0	8554.0	133.0	14064.0	250.0	12132.0	126.0	241.0	965.0	1511.0	3491.0	3754.0	0	0	0
c	0	0	2989.0	3662.0	2747.0	14006.0	118.0	466.0	1724.0	224.0	122.0	2058.0	2341.0	3601.0	3689.0	0	0	0
g	0	0	3661.0	3568.0	2414.0	130.0	153.0	13072.0	437.0	118.0	13868.0	2854.0	2295.0	3664.0	3376.0	0	0	0
t	0	0	3699.0	2735.0	726.0	172.0	106.0	653.0	148.0	13973.0	210.0	8564.0	8294.0	3685.0	3622.0	0	0	0
MA0816.1_shift3 (Ascl2) 
; dyads_m2 versus MA0816.1 (Ascl2); m=9/21; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.50962; ---arCAGCTGyy-----
; cor=; Ncor=
a	0	0	0	237.0	128.0	3.0	300.0	7.0	3.0	4.0	0.0	6.0	34.0	0	0	0	0	0
c	0	0	0	36.0	41.0	300.0	0.0	23.0	300.0	0.0	1.0	206.0	101.0	0	0	0	0	0
g	0	0	0	63.0	172.0	0.0	0.0	300.0	2.0	0.0	300.0	15.0	28.0	0	0	0	0	0
t	0	0	0	16.0	1.0	1.0	15.0	18.0	1.0	300.0	2.0	94.0	199.0	0	0	0	0	0
MA1467.1_rc_shift3 (ATOH1(var.2)_rc) 
; dyads_m2 versus MA1467.1_rc (ATOH1(var.2)_rc); m=10/21; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.507872; ---RACAGCTGTT-----
; cor=; Ncor=
a	0	0	0	426.0	944.0	0.0	1368.0	0.0	181.0	76.0	0.0	0.0	0.0	0	0	0	0	0
c	0	0	0	0.0	35.0	1368.0	0.0	0.0	1368.0	0.0	0.0	182.0	466.0	0	0	0	0	0
g	0	0	0	943.0	296.0	0.0	0.0	1368.0	0.0	0.0	1368.0	179.0	171.0	0	0	0	0	0
t	0	0	0	0.0	93.0	0.0	0.0	204.0	0.0	1368.0	0.0	1008.0	1368.0	0	0	0	0	0
MA1472.1_rc_shift3 (BHLHA15(var.2)_rc) 
; dyads_m2 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/21; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.497386; ---rrCAGCTGbt-----
; cor=; Ncor=
a	0	0	0	577.0	1015.0	0.0	1504.0	11.0	467.0	137.0	33.0	81.0	170.0	0	0	0	0	0
c	0	0	0	316.0	489.0	1504.0	0.0	72.0	1504.0	33.0	6.0	591.0	357.0	0	0	0	0	0
g	0	0	0	410.0	610.0	0.0	4.0	1504.0	30.0	33.0	1504.0	607.0	281.0	0	0	0	0	0
t	0	0	0	202.0	54.0	0.0	54.0	445.0	11.0	1504.0	47.0	897.0	697.0	0	0	0	0	0
MA0665.1_shift3 (MSC) 
; dyads_m2 versus MA0665.1 (MSC); m=12/21; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.49356; ---AACAGCTGTT-----
; cor=; Ncor=
a	0	0	0	69.0	69.0	0.0	69.0	0.0	0.0	0.0	0.0	3.0	0.0	0	0	0	0	0
c	0	0	0	0.0	12.0	69.0	0.0	12.0	69.0	0.0	0.0	10.0	9.0	0	0	0	0	0
g	0	0	0	18.0	3.0	3.0	0.0	69.0	3.0	0.0	69.0	4.0	4.0	0	0	0	0	0
t	0	0	0	7.0	0.0	1.0	0.0	0.0	0.0	69.0	4.0	69.0	69.0	0	0	0	0	0
MA1100.2_rc_shift3 (ASCL1_rc) 
; dyads_m2 versus MA1100.2_rc (ASCL1_rc); m=13/21; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.481896; ---rgCAGCTGyy-----
; cor=; Ncor=
a	0	0	0	1194.0	1349.0	29.0	4413.0	20.0	625.0	218.0	14.0	354.0	726.0	0	0	0	0	0
c	0	0	0	889.0	814.0	4413.0	121.0	1320.0	4413.0	60.0	0.0	3079.0	1495.0	0	0	0	0	0
g	0	0	0	1487.0	3065.0	0.0	24.0	4413.0	1288.0	157.0	4413.0	521.0	926.0	0	0	0	0	0
t	0	0	0	843.0	177.0	52.0	118.0	729.0	107.0	4413.0	0.0	1334.0	1267.0	0	0	0	0	0
MA0691.1_shift3 (TFAP4) 
; dyads_m2 versus MA0691.1 (TFAP4); m=14/21; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.47889; ---AwCAGCTGwT-----
; cor=; Ncor=
a	0	0	0	3423.0	2159.0	0.0	3423.0	2.0	21.0	1.0	0.0	1810.0	299.0	0	0	0	0	0
c	0	0	0	500.0	546.0	3423.0	2.0	85.0	3423.0	1.0	1.0	114.0	682.0	0	0	0	0	0
g	0	0	0	337.0	62.0	0.0	0.0	3423.0	49.0	0.0	3423.0	333.0	433.0	0	0	0	0	0
t	0	0	0	228.0	1264.0	0.0	0.0	14.0	6.0	3423.0	0.0	1613.0	3423.0	0	0	0	0	0
MA1635.1_shift3 (BHLHE22(var.2)) 
; dyads_m2 versus MA1635.1 (BHLHE22(var.2)); m=15/21; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.472017; ---csCAGCTGsg-----
; cor=; Ncor=
a	0	0	0	3886.0	4453.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4398.0	0	0	0	0	0
c	0	0	0	5621.0	5110.0	18331.0	37.0	53.0	18288.0	52.0	15.0	7269.0	4447.0	0	0	0	0	0
g	0	0	0	4447.0	7267.0	11.0	52.0	18288.0	53.0	37.0	18327.0	5112.0	5625.0	0	0	0	0	0
t	0	0	0	4402.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4449.0	3886.0	0	0	0	0	0
MA0091.1_shift1 (TAL1::TCF3) 
; dyads_m2 versus MA0091.1 (TAL1::TCF3); m=16/21; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.471502; -mgAmCAKMTGkT-----
; cor=; Ncor=
a	0	13.0	9.0	39.0	20.0	0.0	44.0	0.0	12.0	0.0	0.0	0.0	4.0	0	0	0	0	0
c	0	14.0	10.0	0.0	24.0	43.0	0.0	1.0	32.0	0.0	0.0	3.0	4.0	0	0	0	0	0
g	0	8.0	20.0	3.0	0.0	1.0	0.0	11.0	0.0	0.0	43.0	20.0	2.0	0	0	0	0	0
t	0	9.0	5.0	2.0	0.0	0.0	0.0	32.0	0.0	44.0	1.0	21.0	34.0	0	0	0	0	0
MA1646.1_rc_shift5 (OSR2_rc) 
; dyads_m2 versus MA1646.1_rc (OSR2_rc); m=17/21; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.468817; -----ydGCTTCTGtkt-
; cor=; Ncor=
a	0	0	0	0	0	2730.0	3882.0	1192.0	240.0	279.0	1526.0	157.0	275.0	211.0	1950.0	3352.0	3484.0	0
c	0	0	0	0	0	4726.0	2266.0	841.0	13982.0	516.0	901.0	14206.0	737.0	406.0	2117.0	3006.0	3246.0	0
g	0	0	0	0	0	3304.0	4274.0	12109.0	170.0	288.0	703.0	229.0	197.0	13937.0	2221.0	4206.0	3641.0	0
t	0	0	0	0	0	4048.0	4386.0	666.0	416.0	13725.0	11678.0	216.0	13599.0	254.0	8520.0	4244.0	4437.0	0
MA0667.1_rc_shift3 (MYF6_rc) 
; dyads_m2 versus MA0667.1_rc (MYF6_rc); m=18/21; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.468764; ---RACAGyTGTT-----
; cor=; Ncor=
a	0	0	0	444.0	444.0	0.0	444.0	56.0	12.0	0.0	0.0	1.0	7.0	0	0	0	0	0
c	0	0	0	7.0	0.0	444.0	0.0	35.0	256.0	7.0	0.0	24.0	70.0	0	0	0	0	0
g	0	0	0	159.0	22.0	2.0	0.0	353.0	30.0	3.0	444.0	18.0	12.0	0	0	0	0	0
t	0	0	0	0.0	2.0	0.0	11.0	12.0	159.0	444.0	0.0	444.0	444.0	0	0	0	0	0
MA0048.2_shift3 (NHLH1) 
; dyads_m2 versus MA0048.2 (NHLH1); m=19/21; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.451339; ---cGCAGCTGCk-----
; cor=; Ncor=
a	0	0	0	788.0	461.0	3.0	2166.0	0.0	96.0	0.0	2.0	296.0	308.0	0	0	0	0	0
c	0	0	0	2166.0	179.0	2166.0	3.0	301.0	2166.0	4.0	4.0	2166.0	736.0	0	0	0	0	0
g	0	0	0	181.0	2166.0	0.0	1.0	2166.0	124.0	4.0	2166.0	102.0	2166.0	0	0	0	0	0
t	0	0	0	111.0	142.0	0.0	0.0	114.0	0.0	2166.0	1.0	350.0	1489.0	0	0	0	0	0
MA1648.1_shift3 (TCF12(var.2)) 
; dyads_m2 versus MA1648.1 (TCF12(var.2)); m=20/21; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.433419; ---ssCACCTGCys----
; cor=; Ncor=
a	0	0	0	13014.0	14835.0	955.0	52529.0	744.0	1913.0	1380.0	2819.0	1089.0	13867.0	11414.0	0	0	0	0
c	0	0	0	19393.0	17594.0	57848.0	2007.0	55598.0	55765.0	3886.0	2088.0	55061.0	17603.0	18154.0	0	0	0	0
g	0	0	0	16996.0	18560.0	1186.0	5607.0	3780.0	3536.0	2625.0	55922.0	2314.0	14293.0	20060.0	0	0	0	0
t	0	0	0	12473.0	10887.0	1887.0	1733.0	1754.0	662.0	53985.0	1047.0	3412.0	16113.0	12248.0	0	0	0	0
MA0820.1_rc_shift3 (FIGLA_rc) 
; dyads_m2 versus MA0820.1_rc (FIGLA_rc); m=21/21; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.416078; ---wmCAGGTGkw-----
; cor=; Ncor=
a	0	0	0	753.0	832.0	65.0	1780.0	0.0	0.0	14.0	29.0	237.0	449.0	0	0	0	0	0
c	0	0	0	289.0	569.0	1780.0	17.0	311.0	527.0	0.0	0.0	160.0	175.0	0	0	0	0	0
g	0	0	0	283.0	225.0	33.0	0.0	1780.0	1780.0	46.0	1780.0	693.0	270.0	0	0	0	0	0
t	0	0	0	455.0	154.0	36.0	56.0	9.0	0.0	1780.0	0.0	690.0	886.0	0	0	0	0	0